Contig-U03094-1
Contig ID Contig-U03094-1
Contig update 2001. 8.29
Contig sequence
>Contig-U03094-1 (Contig-U03094-1Q) /CSM_Contig/Contig-U03094-1Q.Seq.d
CTAAAAATTATTATTCTTGGACTCATAGATGGTGGATTTTACAACATTTA
TCAGTTGATATTATTTTAAAAGATTTAGAAACTATGGAAGATTGGGTTAA
AAGAAATATTTCAGATTATTGTGGATATCATCATAGATATTTAATATTGA
CACATTTATTTAATAAATGTTATAATAGTAATGATGATAATAATAATAAT
GAAAGTAAAAGTGAAGAGAATTCAAACGAAATGAAAATTCATAAGTTATG
GGAAGACGAATTTAATTTTATTCATAAAATAATTAATTTATATCCAGGTC
ATGAATCATCTTGGTCATATAAGAGAGTTTTAACATTATTTTGGTTACAA
ATTGCACAACCAATAGTTTTTCAACGTAACATTTCAACAACTGTACCAAT
TACATCATTACAACAAGAATCTCAATTTGTTGATTCAATTTTAGAAGATA
TCGACTCATCATATTATGAACAACAAAAATCTTTTGCTCAAAGATATTTA
CTTTCAATTTATGAATTAAAATTTAAAGATAGTGCAGATTTTTCAATTGA
TATTGATCAAGTAAAAAATAATTATAGTATAATTATAAATGACTTAAAAA
TTTCTTTCCCAAACCAATTAAAGGTTGGGAAGTATAATTGACACCAATTC
G

Gap no gap
Contig length 651
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 5280316
End point 5280967
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U03094
List of clone(s)

est1=CFB203Z,1,652
Translated Amino Acid sequence
KNYYSWTHRWWILQHLSVDIILKDLETMEDWVKRNISDYCGYHHRYLILTHLFNKCYNSN
DDNNNNESKSEENSNEMKIHKLWEDEFNFIHKIINLYPGHESSWSYKRVLTLFWLQIAQP
IVFQRNISTTVPITSLQQESQFVDSILEDIDSSYYEQQKSFAQRYLLSIYELKFKDSADF
SIDIDQVKNNYSIIINDLKISFPNQLKVGKYN*hqf


Translated Amino Acid sequence (All Frames)
Frame A:
lkiiilglidggfyniyqlilf*ki*klwkiglkeifqiivdiiidi*y*hiylinviiv
mmiiiimkvkvkriqtk*kfisygktnlilfik*liyiqvmnhlghiref*hyfgyklhn
q*ffnvtfqqlyqlhhynknlnlliqf*kisthhimnnknlllkdiyfqfmn*nlkivqi
fqlilik*kiiiv*l*mt*kflsqtn*rlgsiidtns


Frame B:
*kllflds*mvdfttfis*yyfkrfrnygrlg*kkyfrllwiss*ifnidtfi**ml***
*******k*k*refkrnens*vmgrri*fys*nn*fisrs*iilvi*esfniilvtnctt
nsfst*hfnnctnyiittrisic*fnfrryrliil*ttkifcskiftfnl*iki*r*crf
fn*y*sskk*l*ynyk*lknffpkpikgwev*ltpi


Frame C:
KNYYSWTHRWWILQHLSVDIILKDLETMEDWVKRNISDYCGYHHRYLILTHLFNKCYNSN
DDNNNNESKSEENSNEMKIHKLWEDEFNFIHKIINLYPGHESSWSYKRVLTLFWLQIAQP
IVFQRNISTTVPITSLQQESQFVDSILEDIDSSYYEQQKSFAQRYLLSIYELKFKDSADF
SIDIDQVKNNYSIIINDLKISFPNQLKVGKYN*hqf


own update 2004. 6. 9
Homology vs CSM-cDNA
Query= Contig-U03094-1 (Contig-U03094-1Q)
/CSM_Contig/Contig-U03094-1Q.Seq.d
(651 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U03094-1 (Contig-U03094-1Q) /CSM_Contig/Conti... 894 0.0
Contig-U09244-1 (Contig-U09244-1Q) /CSM_Contig/Conti... 44 2e-04
Contig-U09009-1 (Contig-U09009-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U13209-1 (Contig-U13209-1Q) /CSM_Contig/Conti... 38 0.012
Contig-U11446-1 (Contig-U11446-1Q) /CSM_Contig/Conti... 38 0.012
Contig-U10033-1 (Contig-U10033-1Q) /CSM_Contig/Conti... 38 0.012
Contig-U05703-1 (Contig-U05703-1Q) /CSM_Contig/Conti... 38 0.012
Contig-U14182-1 (Contig-U14182-1Q) /CSM_Contig/Conti... 36 0.046
Contig-U11234-1 (Contig-U11234-1Q) /CSM_Contig/Conti... 36 0.046
Contig-U08861-1 (Contig-U08861-1Q) /CSM_Contig/Conti... 36 0.046

>Contig-U03094-1 (Contig-U03094-1Q) /CSM_Contig/Contig-U03094-1Q.Seq.d
Length = 651

Score = 894 bits (451), Expect = 0.0
Identities = 451/451 (100%)
Strand = Plus / Plus


Query: 201 gaaagtaaaagtgaagagaattcaaacgaaatgaaaattcataagttatgggaagacgaa 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaagtaaaagtgaagagaattcaaacgaaatgaaaattcataagttatgggaagacgaa 260


Query: 261 tttaattttattcataaaataattaatttatatccaggtcatgaatcatcttggtcatat 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaattttattcataaaataattaatttatatccaggtcatgaatcatcttggtcatat 320


Query: 321 aagagagttttaacattattttggttacaaattgcacaaccaatagtttttcaacgtaac 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagagagttttaacattattttggttacaaattgcacaaccaatagtttttcaacgtaac 380


Query: 381 atttcaacaactgtaccaattacatcattacaacaagaatctcaatttgttgattcaatt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttcaacaactgtaccaattacatcattacaacaagaatctcaatttgttgattcaatt 440


Query: 441 ttagaagatatcgactcatcatattatgaacaacaaaaatcttttgctcaaagatattta 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttagaagatatcgactcatcatattatgaacaacaaaaatcttttgctcaaagatattta 500


Query: 501 ctttcaatttatgaattaaaatttaaagatagtgcagatttttcaattgatattgatcaa 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttcaatttatgaattaaaatttaaagatagtgcagatttttcaattgatattgatcaa 560


Query: 561 gtaaaaaataattatagtataattataaatgacttaaaaatttctttcccaaaccaatta 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaaaaaataattatagtataattataaatgacttaaaaatttctttcccaaaccaatta 620


Query: 621 aaggttgggaagtataattgacaccaattcg 651
|||||||||||||||||||||||||||||||
Sbjct: 621 aaggttgggaagtataattgacaccaattcg 651


Score = 317 bits (160), Expect = 8e-87
Identities = 160/160 (100%)
Strand = Plus / Plus


Query: 1 ctaaaaattattattcttggactcatagatggtggattttacaacatttatcagttgata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctaaaaattattattcttggactcatagatggtggattttacaacatttatcagttgata 60


Query: 61 ttattttaaaagatttagaaactatggaagattgggttaaaagaaatatttcagattatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttattttaaaagatttagaaactatggaagattgggttaaaagaaatatttcagattatt 120


Query: 121 gtggatatcatcatagatatttaatattgacacatttatt 160
||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtggatatcatcatagatatttaatattgacacatttatt 160


>Contig-U09244-1 (Contig-U09244-1Q) /CSM_Contig/Contig-U09244-1Q.Seq.d
Length = 795

Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus


Query: 266 ttttattcataaaataattaatttat 291
|||||||||||||||||||| |||||
Sbjct: 8 ttttattcataaaataattattttat 33


Score = 32.2 bits (16), Expect = 0.71
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 274 ataaaataattaattt 289
||||||||||||||||
Sbjct: 765 ataaaataattaattt 780


Score = 30.2 bits (15), Expect = 2.8
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 265 attttattcataaaataat 283
|||||||||||| ||||||
Sbjct: 422 attttattcatataataat 440


>Contig-U09009-1 (Contig-U09009-1Q) /CSM_Contig/Contig-U09009-1Q.Seq.d
Length = 1199

Score = 40.1 bits (20), Expect = 0.003
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 62 tattttaaaagatttagaaa 81
||||||||||||||||||||
Sbjct: 871 tattttaaaagatttagaaa 890


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,956
Number of Sequences: 6905
Number of extensions: 14956
Number of successful extensions: 1717
Number of sequences better than 10.0: 170
length of query: 651
length of database: 5,674,871
effective HSP length: 16
effective length of query: 635
effective length of database: 5,564,391
effective search space: 3533388285
effective search space used: 3533388285
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.25
Homology vs DNA
Query= Contig-U03094-1 (Contig-U03094-1Q) /CSM_Contig/Contig-U03094-1Q.Seq.d
(651 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ373421) Dictyostelium discoideum cDNA clone:ddc3e02, 3' e... 892 0.0 2
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 34 4e-04 10
(DW268020) UI-S-GN1-aby-n-09-0-UI.s1 UI-S-GN1 Euprymna scolo... 56 0.002 1
(AE017308) Mycoplasma mobile 163K complete genome. 34 0.005 15
(DB773702) Apis mellifera head cDNA, RIKEN full-length enric... 54 0.007 1
(AP008038) Lotus japonicus genomic DNA, chromosome 1, clone:... 40 0.008 6
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 36 0.014 15
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 36 0.023 15
(EJ126796) 1092343397601 Global-Ocean-Sampling_GS-27-01-01-1... 40 0.028 3
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3... 40 0.032 8
(CP000736) Staphylococcus aureus subsp. aureus JH1, complete... 36 0.048 20
(CP000703) Staphylococcus aureus subsp. aureus JH9, complete... 36 0.048 20
(BD061520) Genome DNA of symbiotic bacteria of aphid. 34 0.051 14
(AR409405) Sequence 1 from patent US 6632935. 34 0.051 14
(BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum... 34 0.051 14
(CP001161) Buchnera aphidicola str. 5A (Acyrthosiphon pisum)... 34 0.052 14
(AR595774) Sequence 3 from patent US 6818429. 50 0.064 2
(AR232184) Sequence 3 from patent US 6455294. 50 0.064 2
(AY714780) Homo sapiens carboxypeptidase B2 (plasma, carboxy... 50 0.064 2
(CQ926635) Sequence 1668 from Patent WO2004083403. 50 0.067 2
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 36 0.072 16
(CQ926643) Sequence 1676 from Patent WO2004083403. 50 0.073 2
(BH022511) GH_MBb0003C14f Gossypium hirsutum L. Gossypium hi... 40 0.083 2
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3... 32 0.087 10
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 34 0.088 11
(AL157758) Human DNA sequence from clone RP11-106H11 on chro... 50 0.11 1
(EI438351) PV_GBa0033C12.f PV_GBa Phaseolus vulgaris genomic... 50 0.11 1
(ED745265) GM_WBb0109B21.r GM_WBb Glycine max genomic clone ... 50 0.11 1
(AM285320) Spiroplasma citri GII3-3X chromosome, contig Cont... 34 0.12 7
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 36 0.14 10
(CP001158) Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisu... 34 0.15 13
(AP009351) Staphylococcus aureus subsp. aureus str. Newman D... 36 0.16 17
(AM436912) Vitis vinifera contig VV78X041966.2, whole genome... 34 0.19 3
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 36 0.20 9
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 42 0.22 16
(AM443144) Vitis vinifera contig VV78X037185.10, whole genom... 38 0.22 3
(CP000742) Methanococcus vannielii SB, complete genome. 36 0.23 18
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s... 34 0.24 9
(AJ938182) Staphylococcus aureus RF122 complete genome. 36 0.25 19
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 32 0.29 11
(AL034559) Plasmodium falciparum MAL3P7. 38 0.30 8
(DX556239) GH_MBb0034F16r GH_MBb Gossypium hirsutum genomic ... 38 0.31 2
(DX522282) GH_MBb0043F13f GH_MBb Gossypium hirsutum genomic ... 38 0.31 2
(EK374514) 1095469432651 Global-Ocean-Sampling_GS-31-01-01-1... 38 0.33 3
(AF211133) Carsonella ruddii natural-host Ctenarytaina eucal... 40 0.35 3
(AE001432) Plasmodium falciparum 3D7 chromosome 2 section 69... 34 0.39 4
(FP020031) Brassica napus GSS, clone JBnB044M02, end read, p... 34 0.41 3
(AY962232) Hevea brasiliensis clone hmac21 microsatellite se... 48 0.42 1
(AY962220) Hevea brasiliensis clone hmct50 microsatellite se... 48 0.42 1
(AY962218) Hevea brasiliensis clone hmac19 microsatellite se... 48 0.42 1
(AC215944) Populus trichocarpa clone POP073-M17, complete se... 48 0.42 1
(AC212611) Solanum lycopersicum chromosome 7 clone C07HBa003... 48 0.42 1
(AC210370) Solanum lycopersicum chromosome 7 clone C07SLm004... 48 0.42 1
(BH001582) BMBAC01E16T7_PSU Brugia malayi Genomic Bac Librar... 48 0.42 1
(BH001581) BMBAC01E16SP6_PSU Brugia malayi Genomic Bac Libra... 48 0.42 1
(DB724060) Solanum lycopersicum cDNA, clone: LEFL2045H10, 5'... 48 0.42 1
(CP001185) Thermosipho africanus TCF52B, complete genome. 48 0.42 1
(AE017263) Mesoplasma florum L1 complete genome. 34 0.50 11
(EJ312886) 1095403240904 Global-Ocean-Sampling_GS-27-01-01-1... 28 0.57 4
(AP009631) Lotus japonicus genomic DNA, clone: LjB12P21, BM1... 44 0.63 5
(AL356128) Human DNA sequence from clone RP11-366I13 on chro... 40 0.67 3
(CR382400) Plasmodium falciparum chromosome 6, complete sequ... 34 0.71 10
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)... 32 0.75 13
(AC109289) Mus musculus clone RP24-220O7, WORKING DRAFT SEQU... 40 0.76 6
(BV540789) G591P5110RA3.T0 Clint Pan troglodytes verus STS g... 32 0.79 3
(AG147729) Pan troglodytes DNA, clone: RP43-009L13.T7. 38 0.79 2
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 36 0.81 14
(AC213017) Populus trichocarpa clone POP051-F14, complete se... 36 0.82 8
(CU179680) Mycoplasma agalactiae PG2 chromosome, complete se... 34 0.83 14
(FM992689) Candida dubliniensis CD36 chromosome 2, complete ... 38 0.90 16
(AC005140) Plasmodium falciparum chromosome 12 clone PFYACB8... 32 0.95 10
(CP000576) Prochlorococcus marinus str. MIT 9301, complete g... 38 1.0 15
(BV505220) qqk25h08.b1 Clint Pan troglodytes verus STS genom... 32 1.0 3
(DX401683) GH__Sa0052A04.b1 Gossypium herbaceum WGS library ... 38 1.1 3
(ER627244) 1093018283981 Global-Ocean-Sampling_GS-36-01-01-2... 36 1.2 2
(EK118512) 1092963284182 Global-Ocean-Sampling_GS-31-01-01-1... 36 1.2 2
(EK102008) 1092963022448 Global-Ocean-Sampling_GS-31-01-01-1... 36 1.2 2
(EK582434) 1095521748078 Global-Ocean-Sampling_GS-32-01-01-1... 36 1.2 2
(EK214390) 1095460111742 Global-Ocean-Sampling_GS-31-01-01-1... 36 1.2 2
(AL954740) Zebrafish DNA sequence from clone DKEY-120P15 in ... 42 1.2 5
(U13979) Bacillus subtilis minor teichoic acid synthesis gen... 36 1.2 4
(BV526542) G591P609660FH3.T0 Clint Pan troglodytes verus STS... 32 1.3 3
(AC167312) Sorex araneus clone SA_Ba-250H2, WORKING DRAFT SE... 36 1.3 5
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 36 1.4 16
(GM049601) Sequence 2 from Patent WO2008065682. 40 1.4 3
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 30 1.4 11
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 32 1.4 13
(AM431564) Vitis vinifera contig VV78X057757.3, whole genome... 34 1.5 5
(CU914457) Zebrafish DNA sequence from clone CH1073-376E10 i... 46 1.7 1
(CU651673) Zebrafish DNA sequence from clone CH1073-416M20 i... 46 1.7 1
(CR762395) Zebrafish DNA sequence from clone CH211-170P16 in... 46 1.7 1
(AM464839) Vitis vinifera contig VV78X198911.7, whole genome... 46 1.7 1
(AC104260) Homo sapiens chromosome 15, clone CTD-2536I1, com... 46 1.7 1
(AC027547) Homo sapiens chromosome 15, clone RP11-18P13, com... 46 1.7 1
(FP102071) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.7 1
(CU896665) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.7 1
(AC194316) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 46 1.7 1
(BH500426) BOGPU51TR BOGP Brassica oleracea genomic clone BO... 46 1.7 1
(FH835894) OSB_1256002xf18r1.ab1 OSB_1256 Nicotiana tabacum ... 46 1.7 1
(FH835541) OSB_1256002xe02f1.ab1 OSB_1256 Nicotiana tabacum ... 46 1.7 1
(FH835229) OSB_1256003xn05f1.ab1 OSB_1256 Nicotiana tabacum ... 46 1.7 1
(FH834822) OSB_1256004xd04f1.ab1 OSB_1256 Nicotiana tabacum ... 46 1.7 1
(FH834819) OSB_1256004xb18f1.ab1 OSB_1256 Nicotiana tabacum ... 46 1.7 1
(FH834722) OSB_1256004xl19f1.ab1 OSB_1256 Nicotiana tabacum ... 46 1.7 1
(FH834696) OSB_1256004xd21f1.ab1 OSB_1256 Nicotiana tabacum ... 46 1.7 1
(FH834524) OSB_1256004xc01r1.ab1 OSB_1256 Nicotiana tabacum ... 46 1.7 1
(FH834396) OSB_1256001xb10r1.ab1 OSB_1256 Nicotiana tabacum ... 46 1.7 1
(FH834143) OSB_1256001xe12r1.ab1 OSB_1256 Nicotiana tabacum ... 46 1.7 1
(FH833987) OSB_1256001xc09r1.ab1 OSB_1256 Nicotiana tabacum ... 46 1.7 1
(FH833913) OSB_1256001xc15f1.ab1 OSB_1256 Nicotiana tabacum ... 46 1.7 1
(ET846914) CHO_OF390xk09r1.ab1 CHO_OF Nicotiana tabacum geno... 46 1.7 1
(ET846865) CHO_OF390xk09f1.ab1 CHO_OF Nicotiana tabacum geno... 46 1.7 1
(ER926391) MUGQ_CH252P286L14T7_CP421_053 CHORI-252 Vervet Mo... 46 1.7 1
(DX284709) OR_ABa0185N19.f OR_ABa Oryza ridleyi genomic clon... 46 1.7 1
(CZ948337) 260106 Tomato EcoRI BAC Library Solanum lycopersi... 46 1.7 1
(CZ880699) OC__Ba0283C18.r OC__Ba Oryza coarctata genomic cl... 46 1.7 1
(EG613970) REPROTRACTF088211C18 POSSUM_01-POSSUM-C-REPROTRAC... 46 1.7 1
(AU277351) Bos taurus cDNA clone:fetus32E05, 3' end, express... 46 1.7 1
(CK653138) AGENCOURT_17673371 NIH_MGC_237 Rattus norvegicus ... 46 1.7 1
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 46 1.7 1
(CP000109) Thiomicrospira crunogena XCL-2, complete genome. 46 1.7 1
(BX548244) Zebrafish DNA sequence from clone CH211-220I15 in... 32 1.8 7
(AC208298) Glycine tomentella clone gtt1-204p21, WORKING DRA... 38 1.8 7
(AC078817) Homo sapiens 12 BAC RP11-244J10 (Roswell Park Can... 44 1.9 3
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co... 30 2.0 15
(BX571857) Staphylococcus aureus strain MSSA476, complete ge... 36 2.0 19
(DR565904) WS0265.B21_I17 WS-PP-N-A-12 Picea glauca cDNA clo... 38 2.0 2
(CR626866) Zebrafish DNA sequence from clone DKEY-147F20 in ... 36 2.0 4
(CP000046) Staphylococcus aureus subsp. aureus COL, complete... 36 2.1 19
(DQ855265) Glycine max clone BAC GM-WBb0040I14, *** SEQUENCI... 32 2.1 9
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 32 2.1 21
(AL772343) Mouse DNA sequence from clone RP23-196N14 on chro... 40 2.2 2
(AC002485) Human PAC clone CTA-212D3, complete sequence. 34 2.2 6
(AL035477) Plasmodium falciparum MAL4P4. 34 2.3 11
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ... 32 2.3 9
(DV998234) GQ02788.B3_G01 GQ099: Mixed spruce tissues Picea ... 38 2.4 2
(CK440701) GQ0024.BR_F12 GQ002: Female cones developmental s... 38 2.4 2
(GE472260) GQ0024.B3.r_F12 GQ002: Female cones developmental... 38 2.4 2
(EU401918) Bombus hypocrita sapporoensis mitochondrion, part... 36 2.4 4
(FI254463) CccaBb058-E11JR CccABb Cajanus cajan genomic clon... 42 2.4 2
(CR855137) Zebrafish DNA sequence from clone CH211-37E10 in ... 34 2.5 5
(CC943983) BOIEO02TR BO_1.4_1.6_KB_nuc Brassica oleracea gen... 40 2.6 2
(AC202361) Medicago truncatula clone mth2-57i21, WORKING DRA... 32 2.7 6
(AM428833) Vitis vinifera contig VV78X040611.4, whole genome... 40 2.8 2
(AC172989) Mus musculus BAC clone RP24-556J6 from chromosome... 38 2.8 4
(BX322572) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***... 34 2.9 6
(CT990466) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 3.0 7
(EA102635) Sequence 18 from patent US 7195870. 40 3.0 3
(AX323538) Sequence 26 from Patent WO0192565. 40 3.0 3
(AX277855) Sequence 18 from Patent WO0177375. 40 3.0 3
(GM995886) Sequence 26 from Patent EP2014776. 40 3.0 3
(AL844507) Plasmodium falciparum chromosome 8. 36 3.1 17
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen... 38 3.2 17
(AC186986) Canis familiaris chromosome 6, clone XX-302M17, c... 32 3.2 2
(AP001808) Homo sapiens genomic DNA, chromosome 18q12 clone:... 42 3.2 7
(BH679077) BOHUM71TF BO_2_3_KB Brassica oleracea genomic clo... 40 3.3 2
(BA000018) Staphylococcus aureus subsp. aureus N315 DNA, com... 36 3.3 18
(X57314) C.biennis entomopoxvirus gene for DNA polymerase. 38 3.3 2
(CO250396) WS00810.B21.1_K17 WS-X-N-A-9 Picea glauca cDNA cl... 38 3.3 2
(CP000253) Staphylococcus aureus subsp. aureus NCTC 8325, co... 36 3.4 18
(AC136974) Medicago truncatula clone mth2-22e9, complete seq... 44 3.5 4
(CT485608) Mouse DNA sequence from clone RP23-427F9 on chrom... 36 3.5 6
(AC115581) Dictyostelium discoideum chromosome 2 map complem... 38 3.5 3
(AM426423) Vitis vinifera contig VV78X023618.5, whole genome... 34 3.5 2
(AC187042) Trichinella spiralis chromosome UNK clone TS195-2... 34 3.5 6
(EX380143) GQ03301.SP6_B12 GQ033 - Terminal leader (Normaliz... 38 3.5 2
(AM464377) Vitis vinifera, whole genome shotgun sequence, co... 34 3.6 2
(ER436349) 1092963797746 Global-Ocean-Sampling_GS-35-01-01-1... 36 3.6 2
(DR571424) WS00729.B21.1_B11 WS-PS-N-A-8 Picea glauca cDNA c... 38 3.6 2
(AC164012) Bos taurus clone CH240-147H7, *** SEQUENCING IN P... 36 3.6 4
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 34 3.6 14
(CT030037) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 30 3.7 10
(AC098861) Homo sapiens BAC clone RP11-297J2 from 4, complet... 40 3.7 6
(DC234501) Plasmodium berghei strain ANKA cDNA clone:SG03052... 32 3.8 3
(ED550438) WCBE607TRB WCBAC Trifolium repens genomic clone 2... 42 3.9 2
(AP009881) Lotus japonicus genomic DNA, chromosome 2, clone:... 40 3.9 6
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 36 3.9 8
(AM452586) Vitis vinifera contig VV78X258473.1, whole genome... 34 4.0 2
(AM474779) Vitis vinifera contig VV78X001222.2, whole genome... 34 4.0 2
(BZ450626) BONDZ39TR BO_1.6_2_KB_tot Brassica oleracea genom... 40 4.1 2
(CP000255) Staphylococcus aureus subsp. aureus USA300_FPR375... 36 4.1 18
(CP000730) Staphylococcus aureus subsp. aureus USA300_TCH151... 36 4.1 18
(BZ155285) CH230-407F9.TV CHORI-230 Segment 2 Rattus norvegi... 42 4.2 2
(AC018911) Homo sapiens chromosome 17 clone RP11-494I8 map 1... 32 4.2 6
(AM285310) Spiroplasma citri GII3-3X chromosome, contig Cont... 38 4.2 5
(EK217944) 1095460125535 Global-Ocean-Sampling_GS-31-01-01-1... 32 4.3 3
(EJ793517) 1093017388414 Global-Ocean-Sampling_GS-30-02-01-1... 34 4.3 2
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 30 4.3 8
(DX440341) BE1082_E05_R IASMA L1 HindIII BAC library Vitis v... 34 4.3 2
(CT500250) A BAC library has been constructed from cultivar ... 34 4.3 2
(DT148986) JGI_ANNO28756.rev ANNO Pimephales promelas Whole ... 34 4.4 2
(CU788468) A BAC library has been constructed from PN40024 g... 34 4.4 2
(BX571856) Staphylococcus aureus subsp. aureus strain MRSA25... 36 4.4 20
(CU741612) A BAC library has been constructed from PN40024 g... 34 4.5 2
(CR382399) Plasmodium falciparum chromosome 6, complete sequ... 32 4.5 8
(AP007961) Lotus japonicus genomic DNA, chromosome 5, clone:... 40 4.6 3
(AC229838) Monodelphis domestica clone VMRC18-869K8, WORKING... 32 4.7 7
(U87145) Toxoplasma gondii chloroplast, complete genome. 34 4.8 6
(AL766847) Streptococcus agalactiae NEM316 complete genome, ... 34 5.0 5
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 32 5.1 9
(CD501719) CDA52-D06.y1d-s SHGC-CDA Gasterosteus aculeatus c... 36 5.1 2
(AP009680) Lotus japonicus genomic DNA, clone: LjT23J20, TM0... 40 5.3 4
(AF165818) Guillardia theta nucleomorph chromosome 1, comple... 32 5.6 8
(AC006278) Plasmodium falciparum chromosome 12 clone PFYAC34... 38 5.6 7
(AP005470) Oryza sativa Japonica Group genomic DNA, chromoso... 42 5.6 3
(EU677193) Oedogonium cardiacum strain SAG 575-1b chloroplas... 34 5.8 7
(EJ068547) 1095458062534 Global-Ocean-Sampling_GS-26-01-01-1... 28 6.0 4
(AE017245) Mycoplasma synoviae 53, complete genome. 32 6.0 13
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ... 38 6.0 7
(AC202611) Rhesus Macaque BAC CH250-317J7 () complete seque... 40 6.2 5
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ... 32 6.3 9
(BU775833) SJEBQF03 SJE Schistosoma japonicum cDNA, mRNA seq... 30 6.5 3
(AL935030) Zebrafish DNA sequence from clone CH211-57O7. 38 6.5 3
(AC079227) Homo sapiens BAC clone RP11-80B23 from 4, complet... 44 6.5 5
(AX346201) Sequence 1272 from Patent WO0200928. 28 6.6 6
(CU137651) Zebrafish DNA sequence from clone DKEY-269H2 in l... 44 6.6 1
(AF147694) Tamias senex 16S ribosomal RNA gene, partial sequ... 44 6.6 1
(AC153849) Mus musculus BAC RP23-97L11 (Roswell Park Cancer... 44 6.6 1
(AC188586) Callithrix jacchus BAC clone CH259-4H12 from chro... 44 6.6 1
(CU228438) Populus EST from severe drought-stressed leaves. 44 6.6 1
(AP009659) Lotus japonicus genomic DNA, chromosome 3, clone:... 44 6.6 1
(AP008211) Oryza sativa (japonica cultivar-group) genomic DN... 44 6.6 1
(AP008209) Oryza sativa (japonica cultivar-group) genomic DN... 44 6.6 1
(AP006696) Lotus japonicus genomic DNA, chromosome 3, clone:... 44 6.6 1
(AP006396) Lotus japonicus genomic DNA, chromosome 3, clone:... 44 6.6 1
(AK288995) Oryza sativa Japonica Group cDNA, clone: J090088A... 44 6.6 1
(AC216917) Populus trichocarpa clone POP066-L06, complete se... 44 6.6 1
(AC216450) Populus trichocarpa clone POP008-B21, complete se... 44 6.6 1
(AC213131) Oryza glaberrima clone OG_BBa0031E23, complete se... 44 6.6 1
(AC183429) Populus trichocarpa clone Pop1-49O2, complete seq... 44 6.6 1
(AC147014) Medicago truncatula clone mth2-164l15, complete s... 44 6.6 1
(AC135598) Oryza sativa chromosome 3 BAC OSJNBb0021K20 genom... 44 6.6 1
(AC129718) Oryza sativa Japonica Group chromosome 5 clone OS... 44 6.6 1
(EA702292) Sequence 81171 from patent US 7365185. 44 6.6 1
(Z95118) Human DNA sequence from clone RP3-354J5 on chromoso... 44 6.6 1
(AC021193) Homo sapiens BAC clone RP11-774G5 from 4, complet... 44 6.6 1
(AC159493) Bos taurus clone CH240-74J19, WORKING DRAFT SEQUE... 44 6.6 1
(AC151020) Callithrix jacchus clone CH259-263L9, WORKING DRA... 44 6.6 1
(AC140971) Canis lupus familiaris clone RP81-380G4, WORKING ... 44 6.6 1
(AC108505) Oryza sativa Japonica Group chromosome 5 clone OJ... 44 6.6 1
(FP102392) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.6 1
(FP102204) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.6 1
(FP074899) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.6 1
(CU929201) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.6 1
(CU928817) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.6 1
(CU856424) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.6 1
(CU618311) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.6 1
(AC079084) Homo sapiens chromosome 4 clone RP11-164M13 map 4... 44 6.6 1
(AP007381) Lotus japonicus genomic DNA, chromosome 3, clone:... 44 6.6 1
(AP001325) Homo sapiens genomic DNA, chromosome 11q23 clone:... 44 6.6 1
(AC234427) Homo sapiens chromosome 6 clone ABC10-44492500C22... 44 6.6 1
(AC221424) Bos taurus clone CH240-406N2, WORKING DRAFT SEQUE... 44 6.6 1
(AC214246) Pongo abelii chromosome UNKNOWN clone CH276-107P1... 44 6.6 1
(AC212271) Oryza glaberrima clone OG_BBa0095J22, *** SEQUENC... 44 6.6 1
(AC181591) Bos taurus clone CH240-398B4, WORKING DRAFT SEQUE... 44 6.6 1
(AC180470) Strongylocentrotus purpuratus clone R3-3011H11, W... 44 6.6 1
(ET998502) CHO_OF005xj13f1.ab1 CHO_OF Nicotiana tabacum geno... 44 6.6 1
(ET868065) CHO_OF232xi09r1.ab1 CHO_OF Nicotiana tabacum geno... 44 6.6 1
(ER511803) 1093015453731 Global-Ocean-Sampling_GS-35-01-01-1... 44 6.6 1
(ER493946) 1093015339570 Global-Ocean-Sampling_GS-35-01-01-1... 44 6.6 1
(ER382732) 1094338841003 Global-Ocean-Sampling_GS-34-01-01-1... 44 6.6 1
(ER351973) 1092347004555 Global-Ocean-Sampling_GS-34-01-01-1... 44 6.6 1
(ER300909) 1092343682007 Global-Ocean-Sampling_GS-34-01-01-1... 44 6.6 1
(EK333939) 1095467033967 Global-Ocean-Sampling_GS-31-01-01-1... 44 6.6 1
(EK327347) 1095467011311 Global-Ocean-Sampling_GS-31-01-01-1... 44 6.6 1
(EJ911290) 1093018539559 Global-Ocean-Sampling_GS-30-02-01-1... 44 6.6 1
(EJ903984) 1093018504231 Global-Ocean-Sampling_GS-30-02-01-1... 44 6.6 1
(EI895053) VUH1-77E14TR VUUBBa (VUH1) Vigna unguiculata geno... 44 6.6 1
(ED292839) AUAC-aam37h03.b1 Ascaris suum whole genome shotgu... 44 6.6 1
(ED090099) AUAC-aas34c10.g1 Ascaris suum whole genome shotgu... 44 6.6 1
(DX534741) GH_MBb0059A02r GH_MBb Gossypium hirsutum genomic ... 44 6.6 1
(DU520631) 1098609848570 CHORI-243 Ovis aries genomic clone ... 44 6.6 1
(DE098158) Oryzias latipes DNA, clone: ola1-128L07.F, genomi... 44 6.6 1
(CR485020) mth2-152H10FM1 BAC end, cultivar Jemalong A17 of ... 44 6.6 1
(BX222118) Danio rerio genomic clone DKEY-268D5, genomic sur... 44 6.6 1
(EL866400) CBXT20431.b1 NICHD_XGC_trop_25 Xenopus (Silurana)... 44 6.6 1
(EG968943) TH24-336 Tamarix hispida roots Tamarix hispida cD... 44 6.6 1
(EE992410) Le_emtis_407D10_M13R29 Little skate (Leucoraja er... 44 6.6 1
(EE991146) Le_emtis_304F08_M13R29 Little skate (Leucoraja er... 44 6.6 1
(EE989946) Le_emtis_202G01_M13R29 Little skate (Leucoraja er... 44 6.6 1
(DN571332) 92222671 Sea Urchin primary mesenchyme cell cDNA ... 44 6.6 1
(AU073327) Dictyostelium discoideum slug cDNA, clone SSG682. 44 6.6 1
(CR582293) Xenopus tropicalis EST, clone THdA036j16 5'. 44 6.6 1
(CO848463) LM_GM5_006053 Locusta migratoria gregarious phase... 44 6.6 1
(AM097187) Lutzomyia longipalpis EST clone SFM-03c09, sequen... 44 6.6 1
(AM097186) Lutzomyia longipalpis EST clone SFM-03c10, sequen... 44 6.6 1
(AM097185) Lutzomyia longipalpis EST clone SFM-03c09, sequen... 44 6.6 1
(CO343761) EP18004.3prime Exelixis FlyTag CK02 pCDNA-SK+ Dro... 44 6.6 1
(CJ917927) Triticum aestivum cDNA clone:whthkles3n01, 3' end. 44 6.6 1
(CJ910190) Triticum aestivum cDNA clone:whthkles16d24, 3' end. 44 6.6 1
(CI752986) Oryza sativa Japonica Group cDNA, clone: J09B0088... 44 6.6 1
(CI739699) Oryza sativa Japonica Group cDNA, clone: J09B0021... 44 6.6 1
(FG773404) G1147P330FG21.T0 Anolis carolinensis pooled norma... 44 6.6 1
(FG772439) G1147P356FM19.T0 Anolis carolinensis pooled norma... 44 6.6 1
(FG767908) G1147P341RL22.T0 Anolis carolinensis pooled norma... 44 6.6 1
(FG767860) G1147P341FL22.T0 Anolis carolinensis pooled norma... 44 6.6 1
(FG727456) G1145P337RI17.T0 Anolis carolinensis pooled norma... 44 6.6 1
(FG727408) G1145P337FI17.T0 Anolis carolinensis pooled norma... 44 6.6 1
(FG726128) G1145P37FM4.T0 Anolis carolinensis pooled normali... 44 6.6 1
(FG717680) G1144P312RA4.T0 Anolis carolinensis pooled normal... 44 6.6 1
(FG717632) G1144P312FA4.T0 Anolis carolinensis pooled normal... 44 6.6 1
(FG679317) G1143P330FH4.T0 Anolis carolinensis pooled normal... 44 6.6 1
(FG679269) G1143P330RH4.T0 Anolis carolinensis pooled normal... 44 6.6 1
(FG219798) Aaov02971 Antheraea assama fifth instar larval ov... 44 6.6 1
(FF318163) 280395990 Pea aphid whole body normalized full le... 44 6.6 1
(FF302228) 279351306 Pea aphid whole body normalized full le... 44 6.6 1
(FF097839) CPAD-aac21g08.b1 PB2801_EST_CPAD1 Caenorhabditis ... 44 6.6 1
(EY367035) CAXA11044.fwd CAXA Helobdella robusta Subtracted ... 44 6.6 1
(EW990948) LJGFIS33_A09 Adult female Lutzomyia longipalpis m... 44 6.6 1
(CP001133) Vibrio fischeri MJ11 chromosome II, complete sequ... 44 6.6 1
(AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1... 40 6.7 8
(AC155977) Xenopus (Silurana) tropicalis clone CH216-60E17, ... 42 6.8 3
(AF270939) Heterodoxus macropus mitochondrion, complete genome. 30 6.9 5
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 28 6.9 14
(AC206931) Solanum tuberosum chromosome 6 clone RHPOTKEY060H... 32 6.9 6
(AC006280) Plasmodium falciparum chromosome 12 clone PFYAC72... 38 6.9 6
(CP000107) Ehrlichia canis str. Jake, complete genome. 32 7.1 13
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7... 34 7.2 8
(BX927144) Zebrafish DNA sequence from clone CH211-216K22 in... 42 7.2 4
(AC068138) Homo sapiens BAC clone RP11-813K12 from 2, comple... 40 7.2 4
(CP000743) Methanococcus aeolicus Nankai-3, complete genome. 32 7.4 14
(AC150978) Medicago truncatula clone mth2-66m17, complete se... 32 7.5 6
(AP004515) Lotus japonicus genomic DNA, chromosome 4, clone:... 40 8.1 5
(EU626442) Gossypium raimondii clone BAC 031J10, complete se... 36 8.3 5
(BA000033) Staphylococcus aureus subsp. aureus MW2 DNA, comp... 36 8.3 18
(EI286478) GM_WBc0006E21.r GM_WBc Glycine max genomic clone ... 32 8.6 3
(CU469504) Zebrafish DNA sequence from clone DKEY-285C2 in l... 38 8.6 5
(CU469494) Zebrafish DNA sequence from clone CH1073-231I1 in... 34 8.9 3
(AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 32 8.9 10
(CR352228) Zebrafish DNA sequence from clone CH211-104F13 in... 34 9.0 6
(CZ873141) OC__Ba0272G19.r OC__Ba Oryza coarctata genomic cl... 40 9.0 2
(AL845483) Mouse DNA sequence from clone RP23-256M16 on chro... 40 9.1 4
(AP007881) Lotus japonicus genomic DNA, chromosome 4, clone:... 40 9.2 3
(AC234257) Cucumis sativus chromosome 1 BAC clone ccbaa, com... 36 9.2 5
(AC110988) Rattus norvegicus clone CH230-172O2, *** SEQUENCI... 38 9.2 3
(EJ925790) 1093018781181 Global-Ocean-Sampling_GS-30-02-01-1... 40 9.3 2
(AL935269) Zebrafish DNA sequence from clone DKEY-46J18. 32 9.5 6
(CU138533) Zebrafish DNA sequence from clone CH211-25B15 in ... 36 9.5 4
(AX346447) Sequence 1518 from Patent WO0200928. 32 9.7 4

>(BJ373421) Dictyostelium discoideum cDNA clone:ddc3e02, 3' end,
single read.
Length = 652

Score = 892 bits (450), Expect(2) = 0.0
Identities = 450/450 (100%)
Strand = Plus / Minus


Query: 202 aaagtaaaagtgaagagaattcaaacgaaatgaaaattcataagttatgggaagacgaat 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aaagtaaaagtgaagagaattcaaacgaaatgaaaattcataagttatgggaagacgaat 392


Query: 262 ttaattttattcataaaataattaatttatatccaggtcatgaatcatcttggtcatata 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ttaattttattcataaaataattaatttatatccaggtcatgaatcatcttggtcatata 332


Query: 322 agagagttttaacattattttggttacaaattgcacaaccaatagtttttcaacgtaaca 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 agagagttttaacattattttggttacaaattgcacaaccaatagtttttcaacgtaaca 272


Query: 382 tttcaacaactgtaccaattacatcattacaacaagaatctcaatttgttgattcaattt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tttcaacaactgtaccaattacatcattacaacaagaatctcaatttgttgattcaattt 212


Query: 442 tagaagatatcgactcatcatattatgaacaacaaaaatcttttgctcaaagatatttac 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tagaagatatcgactcatcatattatgaacaacaaaaatcttttgctcaaagatatttac 152


Query: 502 tttcaatttatgaattaaaatttaaagatagtgcagatttttcaattgatattgatcaag 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 tttcaatttatgaattaaaatttaaagatagtgcagatttttcaattgatattgatcaag 92


Query: 562 taaaaaataattatagtataattataaatgacttaaaaatttctttcccaaaccaattaa 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 taaaaaataattatagtataattataaatgacttaaaaatttctttcccaaaccaattaa 32


Query: 622 aggttgggaagtataattgacaccaattcg 651
||||||||||||||||||||||||||||||
Sbjct: 31 aggttgggaagtataattgacaccaattcg 2

Score = 270 bits (136), Expect(2) = 0.0
Identities = 136/136 (100%)
Strand = Plus / Minus


Query: 1 ctaaaaattattattcttggactcatagatggtggattttacaacatttatcagttgata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ctaaaaattattattcttggactcatagatggtggattttacaacatttatcagttgata 593


Query: 61 ttattttaaaagatttagaaactatggaagattgggttaaaagaaatatttcagattatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ttattttaaaagatttagaaactatggaagattgggttaaaagaaatatttcagattatt 533


Query: 121 gtggatatcatcatag 136
||||||||||||||||
Sbjct: 532 gtggatatcatcatag 517

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 957,358,324
Number of extensions: 63585168
Number of successful extensions: 5750917
Number of sequences better than 10.0: 343
Length of query: 651
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 627
Effective length of database: 99,340,224,878
Effective search space: 62286320998506
Effective search space used: 62286320998506
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.22
Homology vs Protein
Query= Contig-U03094-1 (Contig-U03094-1Q) /CSM_Contig/Contig-U03094-1Q.Seq.d
(651 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AK106529_1(AK106529|pid:none) Oryza sativa Japonica Group cDNA c... 72 1e-11
AL162412_1(AL162412|pid:none) Human DNA sequence from clone RP11... 67 5e-10
(Q7Z6K3) RecName: Full=Protein prenyltransferase alpha subunit r... 67 5e-10
BC053622_1(BC053622|pid:none) Homo sapiens protein prenyltransfe... 67 5e-10
AC004122_12(AC004122|pid:none) Arabidopsis thaliana chromosome I... 64 3e-09
DQ459166_1(DQ459166|pid:none) Arabidopsis thaliana protein preny... 64 3e-09
AY735507_1(AY735507|pid:none) Arabidopsis thaliana chromosome 1 ... 64 3e-09
(A1L3L1) RecName: Full=Protein prenyltransferase alpha subunit r... 64 5e-09
AL162412_2(AL162412|pid:none) Human DNA sequence from clone RP11... 59 1e-07
BC124321_1(BC124321|pid:none) Danio rerio hypothetical LOC561820... 56 1e-06
(A3KPW7) RecName: Full=Protein prenyltransferase alpha subunit r... 56 1e-06
CR954201_68(CR954201|pid:none) Ostreococcus tauri strain OTTH059... 49 1e-04
EZ000097_1(EZ000097|pid:none) TSA: Schistosoma japonicum SJCHGC0... 49 2e-04
AY223247_1(AY223247|pid:none) Schistosoma japonicum clone ZZD403... 49 2e-04
AK073525_1(AK073525|pid:none) Oryza sativa Japonica Group cDNA c... 48 3e-04
AE014298_385(AE014298|pid:none) Drosophila melanogaster chromoso... 47 6e-04
AB161972_1(AB161972|pid:none) Entamoeba histolytica EhGGTIIa gen... 44 0.005
AM443513_5(AM443513|pid:none) Vitis vinifera contig VV78X057535.... 42 0.012
(O24304) RecName: Full=Protein farnesyltransferase/geranylgerany... 42 0.020
AY735509_1(AY735509|pid:none) Arabidopsis thaliana chromosome 1 ... 40 0.046
AY815227_1(AY815227|pid:none) Schistosoma japonicum SJCHGC05785 ... 40 0.059
AY735508_1(AY735508|pid:none) Arabidopsis thaliana chromosome 1 ... 40 0.059
DQ440467_1(DQ440467|pid:none) Aedes aegypti clone AET-6725 Rab-p... 40 0.078
(Q55DQ4) RecName: Full=Geranylgeranyl transferase type-2 subunit... 40 0.078
AF525030_1(AF525030|pid:none) Catharanthus roseus farnesyltransf... 39 0.10
AL035356_31(AL035356|pid:none) Arabidopsis thaliana DNA chromoso... 39 0.13
AY072209_1(AY072209|pid:none) Arabidopsis thaliana putative Rab ... 39 0.13
FN357308_14(FN357308|pid:none) Schistosoma mansoni genome sequen... 39 0.13
FN392319_194(FN392319|pid:none) Pichia pastoris GS115 chromosome... 39 0.17
AP008971_837(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA,... 38 0.23
(Q9LX33) RecName: Full=Protein farnesyltransferase/geranylgerany... 38 0.23
A41013(A41013)protein farnesyltransferase (EC 2.5.1.-) alpha cha... 38 0.23
BC157425_1(BC157425|pid:none) Xenopus laevis hypothetical protei... 38 0.29
AK123002_1(AK123002|pid:none) Homo sapiens cDNA FLJ16794 fis, cl... 38 0.29
(P49354) RecName: Full=Protein farnesyltransferase/geranylgerany... 38 0.29
AM439248_6(AM439248|pid:none) Vitis vinifera contig VV79X007207.... 37 0.39
BT036588_1(BT036588|pid:none) Zea mays full-length cDNA clone ZM... 37 0.50
BC129222_1(BC129222|pid:none) Danio rerio zgc:158397, mRNA (cDNA... 37 0.50
BT035588_1(BT035588|pid:none) Zea mays full-length cDNA clone ZM... 37 0.50
CR380956_40(CR380956|pid:none) Candida glabrata strain CBS138 ch... 37 0.50
AM465666_3(AM465666|pid:none) Vitis vinifera contig VV78X057834.... 36 0.86
(Q61239) RecName: Full=Protein farnesyltransferase/geranylgerany... 35 1.5
(Q04631) RecName: Full=Protein farnesyltransferase/geranylgerany... 35 1.5
AL844506_75(AL844506|pid:none) Plasmodium falciparum 3D7 chromos... 35 1.5
BC085758_1(BC085758|pid:none) Rattus norvegicus farnesyltransfer... 35 1.5
S48301(S48301;A39655;S56803;S19037) geranylgeranyl transferase (... 35 1.9
AP007157_702(AP007157|pid:none) Aspergillus oryzae RIB40 genomic... 35 1.9
FM992688_882(FM992688|pid:none) Candida dubliniensis CD36 chromo... 35 1.9
CU640366_993(CU640366|pid:none) Podospora anserina genomic DNA c... 35 1.9
BC037295_1(BC037295|pid:none) Homo sapiens farnesyltransferase, ... 35 2.5
BC112662_1(BC112662|pid:none) Bos taurus farnesyltransferase, CA... 35 2.5
(Q9Y765) RecName: Full=Protein farnesyltransferase/geranylgerany... 35 2.5
AK060892_1(AK060892|pid:none) Oryza sativa Japonica Group cDNA c... 35 2.5
AF513631_1(AF513631|pid:none) Talaromyces emersonii geranylgeran... 34 4.3
EU970986_1(EU970986|pid:none) Zea mays clone 355312 rab geranylg... 34 4.3
CP000806_1804(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 33 5.6
AB083372_1(AB083372|pid:none) Entamoeba histolytica EhFTalpha ge... 33 5.6
DQ863313_1(DQ863313|pid:none) Penicillium marneffei RAM2-like pr... 33 7.3
AB201555_1(AB201555|pid:none) Bombyx mori FNTA mRNA for farnesyl... 33 7.3
AM910996_591(AM910996|pid:none) Plasmodium knowlesi strain H chr... 33 7.3
CU928173_453(CU928173|pid:none) Zygosaccharomyces rouxii strain ... 33 7.3
CR382123_126(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 33 9.5
CP000813_253(CP000813|pid:none) Bacillus pumilus SAFR-032, compl... 33 9.5
DQ834250_31(DQ834250|pid:none) Staphylococcus phage PH15, comple... 33 9.5

>AK106529_1(AK106529|pid:none) Oryza sativa Japonica Group cDNA
clone:002-107-H01, full insert sequence.
&AP003347_12(AP003347|pid:none)
&AP003452_4(AP003452|pid:none)
&AP008207_2159(AP008207|pid:none)
Length = 408

Score = 72.0 bits (175), Expect = 1e-11
Identities = 30/115 (26%), Positives = 61/115 (53%)
Frame = +3

Query: 6 NYYSWTHRWWILQHLSVDIILKDLETMEDWVKRNISDYCGYHHRYLILTHLFNKCYXXXX 185
NY +W HR W++ +++ + +L +L+ W + +++D C +H+R +L L + C+
Sbjct: 205 NYRAWRHRCWLIPYMTREQVLNELKKSTRWNELHVADNCCFHYRRSLLLALLDSCH---- 260

Query: 186 XXXXXXXXXXXXXXXMKIHKLWEDEFNFIHKIINLYPGHESSWSYKRVLTLFWLQ 350
++H LW++E + K+I Y G ES W ++R L+ +W++
Sbjct: 261 ----VEDTEDSLDRKSEVHLLWKEELTWNEKLIRRYQGRESLWIHRRFLSQWWMK 311

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 832,125,899
Number of extensions: 15264099
Number of successful extensions: 34315
Number of sequences better than 10.0: 64
Number of HSP's gapped: 34257
Number of HSP's successfully gapped: 88
Length of query: 217
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 94
Effective length of database: 653,084,107
Effective search space: 61389906058
Effective search space used: 61389906058
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.82 gvh: 0.35 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.34 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
28.0 %: nuclear
24.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: peroxisomal

>> prediction for Contig-U03094-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0