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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15615-1
Contig ID Contig-U15615-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15615-1 (Contig-U15615-1Q) /CSM_Contig/Contig-U15615-1Q.Seq.d
AATTATTATTATTAATAAAAATTATTAAACTATTAATTAATATAAAAAAA
TAATATATATATTTTTTATAAAAAAATTATAAAAAAAATAAATAAAAATG
AGAATAATTTTTTATTTAACATTATTATTATTTATTTTTAATAAAGTTAA
ATCAGATAATTGTACAATTGGTGGATTAACTGCAACATCATGTAATGAGA
CATCACAACAATATTATTTTACTCAAGATAAATTTACAAGTGAAGATATA
ATACAAATACCATTTGGTGCTAAATTATATTTTTCTGGAGATGTAGTATT
TAATTATCCAGTTAATTTCAATTGTCAACCATCACTTAAAAAGGAATTAT
CACGTTTTGTTTATGAAATTGATTGTCTTCAAGTTTTTTCCAATGGTACC
ATCACCTATAACGCAGAGGAAATCTATTGTAGTGTAGATTTCTCAACAGT
ATTTGACATTGATACAATGGTTGATAAACCAGTTGACATGGTTGAATCAT
GGAGTAGATTTATGAAACCTACCAAAGGATTTGGTGAAACCAAAATCTAT
GAACCAGTAGTTTACTCTAGAATTAAAGCTCCAAGCCGGTTATAAATGTG
ATTTTAATCCAGGTTTTAGAACTAGTCGTCGTGTACCTGATAAATATGCA
CTCCATTCAAAATGTGCTTGGGCAAAGGCTCTCTTCCCAGCCGGTGATTT
CAATATTAGAATCACTCCATGTAACCTTCAAAACAATAGTGAATCTGTTC
GTAAATTAGAAGAAATTGGTTTCGATAAAAATTTTTACATGGAAAAATTA
GATTTCACTCCAACTGATGGTTTATTCTATAATGGTAATAGAGAAAGTAT
TTATATTCGTTATTATCCAAATTTTGAAAAGAAATTTGATTTATCTTCAA
TTCAAGATATTTTTGATTCTTATCTTTATATTATTAATTATTGCGAAGAT
AATCCAAATAAATTTGAAATTTCATTTGGAATGCAAAGTGATCTTTGGGA
TCATAGAGCATTCAATTTAACTGATTTCCAATTGGGTTAAAAATGTTAAT
GGAACTTTTGAAGGTAGTGCCACTAGAAATCAAATCAGTATTATGGTTTT
AATTTTATCAGTTTTATTAGTTTTAATTTTATAAAAGAAAAAAAAAAAAA
CATTATGATAAATAATTAAAAAAAAATCAAGATAAAAAGAATACTATATT
TCAATATTAGAATCACTCCATGTAACCTTCAAAACAATAGTGAATCTGTT
CGTAAATTAGAAGAAATTGGTTTCGATAAAAATTTTTACATGGAAAAATT
AGATTTCACTCCAACTGATGGTTTATTCTATAATGGTAATAGAGAAAGTA
TTTATATTCGTTATTATCCAAATTTTGAAAAGAAATTTGATTTATCTTCA
ATTCAAGATATTTTTGATTCTTATCTTTATATTATTAATTATTGCGAAGA
TAATCCAAATAAATTTGAAATTTCATTTGGAATGCAAAGTGATCTTTGGG
ATCATAGAGCATTCAATTTAACTGATTTCCAATTGGTTAAAAATGTTAAT
GGAACTTTTGAAGGTAGTGCCACTAGAAATCAAATCAGTATTATGGTTTT
AATTTTATCAGTTTTATTAGTTTTAATTTTATAAAAGAAAAAAAAAAAAA
CATTATGATAAATAATTAAAAAAAAATCAAGATAAAAAGAATACTAT---
-------TGGNTTAAAANGNTNANGGGACCTTTTNAGGGGGGGNCCCNNN
NAANCCAANCCGGNNTNGGGGTTTTANTTTNNCCGGTTTTTTNGGTTTTA
TTTTNANAAAAAAAAAAAAAAAANCCTTATGATNAATAATTAAAAAAAAA
TCNAGGATAAAAAGAAT
Gap gap included
Contig length 1857
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 5404729
End point 5403412
Strand (PLUS/MINUS) MINUS
Number of clones 16
Number of EST 19
Link to clone list U15615
List of clone(s) 

est1=CHI601F,-26,606
est2=SFJ634F,1,606
est3=AFI484F,11,469
est4=AFH330F,56,526
est5=SSG159F,272,874
est6=SSC278Z,479,1253
est7=SSC380Z,503,1292
est8=SSK471Z,562,1254
est9=SSA466Z,647,1241
est10=AFI484H,697,1697
est11=SSJ402Z,718,1253
est12=SSE468Z,725,1253
est13=SSE685Z,735,1293
est14=SSD240Z,741,1298
est15=SSM474Z,870,1253
est16=SSG805Z,935,1302
est17=SSD574F,1006,1362
est18=SSG159Z,1077,1252
est19=AFI484Z,1698,1857
Translated Amino Acid sequence 
iiiinkny*tin*ykkiiyiffikkl*kk*ikmriifyltlllfifnkvksdnctigglt
atscnetsqqyyftqdkftsediiqipfgaklyfsgdvvfnypvnfncqpslkkelsrfv
yeidclqvfsngtitynaeeiycsvdfstvfdidtmvdkpvdmveswsrfmkptkgfget
kiyepvvysrikapsrl*m*f*srf*n*ssct**ictpfkmclgkgslpsr*fqy*nhsm
*pskq**ics*irrnwfr*kflhgkirfhsn*wfil*w**rkylysllskf*kei*fifn
sryf*flslyy*llrr*sk*i*nfiwnak*slgs*siqfn*fpiglkmlmellkvvplei
ksvlwf*fyqfy*f*fykrkkkkhydk*LKKNQDKKNTifqy*nhsm*pskq**ics*ir
rnwfr*kflhgkirfhsn*wfil*w**rkylysllskf*kei*fifnsryf*flslyy*l
lrr*sk*i*nfiwnak*slgs*siqfn*fpig*kc*wnf*r*ch*ksnqyygfnfisfis
fnfikekkkniminn*kkikikril---

---GLKXXXDLXRGGPXXXXPXXGFXFXRFFXFYFXKKKKKXLMXNN*kkixdkkn
Translated Amino Acid sequence (All Frames) 
Frame A:
nyyy**kllny*li*knniyifykkiikkinknennflfniiiiyf**s*ir*lynwwin
cnim**dittilfysr*iyk*ryntntiwc*iiffwrcsi*lss*fqlstit*kgiitfc
l*n*lsssffqwyhhl*rrgnll*crflnsi*h*yng**ts*hg*ime*iyetyqriw*n
qnl*tssll*n*sskpvinviliqvlelvvvylinmhsiqnvlgqrlssqpvisileslh
vtfktivnlfvn*kklvsikiftwkn*islqlmvysimviekvfifviiqilkrnliylq
fkiflilifilliiakiiqinlkfhleckvifgiiehsi*lisnwvknvngtfegsatrn
qisimvlilsvllvlil*kkkkktl**iikkksr*keyyisileslhvtfktivnlfvn*
kklvsikiftwkn*islqlmvysimviekvfifviiqilkrnliylqfkiflilifilli
iakiiqinlkfhleckvifgiiehsi*lisnwlkmlmellkvvpleiksvlwf*fyqfy*
f*fykrkkkkhydk*LKKNQDKKNT---

---wxkxxxgpfxggxxxxqxgxgvlxxpvfxvlfxxkkkkxpydx*lkknxg*ke

Frame B:
iiiinkny*tin*ykkiiyiffikkl*kk*ikmriifyltlllfifnkvksdnctigglt
atscnetsqqyyftqdkftsediiqipfgaklyfsgdvvfnypvnfncqpslkkelsrfv
yeidclqvfsngtitynaeeiycsvdfstvfdidtmvdkpvdmveswsrfmkptkgfget
kiyepvvysrikapsrl*m*f*srf*n*ssct**ictpfkmclgkgslpsr*fqy*nhsm
*pskq**ics*irrnwfr*kflhgkirfhsn*wfil*w**rkylysllskf*kei*fifn
sryf*flslyy*llrr*sk*i*nfiwnak*slgs*siqfn*fpiglkmlmellkvvplei
ksvlwf*fyqfy*f*fykrkkkkhydk*LKKNQDKKNTifqy*nhsm*pskq**ics*ir
rnwfr*kflhgkirfhsn*wfil*w**rkylysllskf*kei*fifnsryf*flslyy*l
lrr*sk*i*nfiwnak*slgs*siqfn*fpig*kc*wnf*r*ch*ksnqyygfnfisfis
fnfikekkkniminn*kkikikril---

---GLKXXXDLXRGGPXXXXPXXGFXFXRFFXFYFXKKKKKXLMXNN*kkixdkkn

Frame C:
llllikiikllinikk*yiyfl*knykknk*k*e*ffi*hyyylfliklnqiivqlvd*l
qhhvmrhhnniillkinlqvki*ykyhlvlnyiflem*yliiqlisivnhhlkrnyhvlf
mklivfkffpmvpspitqrksivv*isqqyltliqwlinqltwlnhgvdl*nlpkdlvkp
ksmnq*ftlelklqagykcdfnpgfrtsrrvpdkyalhskcawakalfpagdfniritpc
nlqnnsesvrkleeigfdknfymekldftptdglfyngnresiyiryypnfekkfdlssi
qdifdsylyiinycednpnkfeisfgmqsdlwdhrafnltdfqlg*kc*wnf*r*ch*ks
nqyygfnfisfisfnfikekkkniminn*kkikikrilyfniritpcnlqnnsesvrkle
eigfdknfymekldftptdglfyngnresiyiryypnfekkfdlssiqdifdsylyiiny
cednpnkfeisfgmqsdlwdhrafnltdfqlvknvngtfegsatrnqisimvlilsvllv
lil*kkkkktl**iikkksr*keyy---

---x*xxxgtfxggxpxxpxrxxgfxxxgfxgfixxkkkkkxl*xiikkksrikr
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15615-1 (Contig-U15615-1Q)
/CSM_Contig/Contig-U15615-1Q.Seq.d
         (1867 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15615-1 (Contig-U15615-1Q) /CSM_Contig/Conti...  1976  0.0
Contig-U04455-1 (Contig-U04455-1Q) /CSM_Contig/Conti...    40  0.012
Contig-U15346-1 (Contig-U15346-1Q) /CSM_Contig/Conti...    38  0.048
Contig-U11714-1 (Contig-U11714-1Q) /CSM_Contig/Conti...    38  0.048
Contig-U11710-1 (Contig-U11710-1Q) /CSM_Contig/Conti...    38  0.048
Contig-U06181-1 (Contig-U06181-1Q) /CSM_Contig/Conti...    38  0.048
Contig-U16485-1 (Contig-U16485-1Q) /CSM_Contig/Conti...    36  0.19
Contig-U14711-1 (Contig-U14711-1Q) /CSM_Contig/Conti...    36  0.19
Contig-U12414-1 (Contig-U12414-1Q) /CSM_Contig/Conti...    36  0.19
Contig-U09680-1 (Contig-U09680-1Q) /CSM_Contig/Conti...    36  0.19

>Contig-U15615-1 (Contig-U15615-1Q) /CSM_Contig/Contig-U15615-1Q.Seq.d
          Length = 1867

 Score = 1976 bits (997), Expect = 0.0
 Identities = 997/997 (100%)
 Strand = Plus / Plus

                                                                        
Query: 141  ataaagttaaatcagataattgtacaattggtggattaactgcaacatcatgtaatgaga 200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141  ataaagttaaatcagataattgtacaattggtggattaactgcaacatcatgtaatgaga 200

                                                                        
Query: 201  catcacaacaatattattttactcaagataaatttacaagtgaagatataatacaaatac 260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201  catcacaacaatattattttactcaagataaatttacaagtgaagatataatacaaatac 260

                                                                        
Query: 261  catttggtgctaaattatatttttctggagatgtagtatttaattatccagttaatttca 320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261  catttggtgctaaattatatttttctggagatgtagtatttaattatccagttaatttca 320

                                                                        
Query: 321  attgtcaaccatcacttaaaaaggaattatcacgttttgtttatgaaattgattgtcttc 380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321  attgtcaaccatcacttaaaaaggaattatcacgttttgtttatgaaattgattgtcttc 380

                                                                        
Query: 381  aagttttttccaatggtaccatcacctataacgcagaggaaatctattgtagtgtagatt 440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381  aagttttttccaatggtaccatcacctataacgcagaggaaatctattgtagtgtagatt 440

                                                                        
Query: 441  tctcaacagtatttgacattgatacaatggttgataaaccagttgacatggttgaatcat 500
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441  tctcaacagtatttgacattgatacaatggttgataaaccagttgacatggttgaatcat 500

                                                                        
Query: 501  ggagtagatttatgaaacctaccaaaggatttggtgaaaccaaaatctatgaaccagtag 560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501  ggagtagatttatgaaacctaccaaaggatttggtgaaaccaaaatctatgaaccagtag 560

                                                                        
Query: 561  tttactctagaattaaagctccaagccggttataaatgtgattttaatccaggttttaga 620
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561  tttactctagaattaaagctccaagccggttataaatgtgattttaatccaggttttaga 620

                                                                        
Query: 621  actagtcgtcgtgtacctgataaatatgcactccattcaaaatgtgcttgggcaaaggct 680
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621  actagtcgtcgtgtacctgataaatatgcactccattcaaaatgtgcttgggcaaaggct 680

                                                                        
Query: 681  ctcttcccagccggtgatttcaatattagaatcactccatgtaaccttcaaaacaatagt 740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681  ctcttcccagccggtgatttcaatattagaatcactccatgtaaccttcaaaacaatagt 740

                                                                        
Query: 741  gaatctgttcgtaaattagaagaaattggtttcgataaaaatttttacatggaaaaatta 800
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741  gaatctgttcgtaaattagaagaaattggtttcgataaaaatttttacatggaaaaatta 800

                                                                        
Query: 801  gatttcactccaactgatggtttattctataatggtaatagagaaagtatttatattcgt 860
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801  gatttcactccaactgatggtttattctataatggtaatagagaaagtatttatattcgt 860

                                                                        
Query: 861  tattatccaaattttgaaaagaaatttgatttatcttcaattcaagatatttttgattct 920
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861  tattatccaaattttgaaaagaaatttgatttatcttcaattcaagatatttttgattct 920

                                                                        
Query: 921  tatctttatattattaattattgcgaagataatccaaataaatttgaaatttcatttgga 980
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921  tatctttatattattaattattgcgaagataatccaaataaatttgaaatttcatttgga 980

                                                                        
Query: 981  atgcaaagtgatctttgggatcatagagcattcaatttaactgatttccaattgggttaa 1040
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981  atgcaaagtgatctttgggatcatagagcattcaatttaactgatttccaattgggttaa 1040

                                                                        
Query: 1041 aaatgttaatggaacttttgaaggtagtgccactagaaatcaaatcagtattatggtttt 1100
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 aaatgttaatggaacttttgaaggtagtgccactagaaatcaaatcagtattatggtttt 1100

                                                 
Query: 1101 aattttatcagttttattagttttaattttataaaag 1137
            |||||||||||||||||||||||||||||||||||||
Sbjct: 1101 aattttatcagttttattagttttaattttataaaag 1137


 Score =  914 bits (461), Expect = 0.0
 Identities = 461/461 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1177 tcaagataaaaagaatactatatttcaatattagaatcactccatgtaaccttcaaaaca 1236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1177 tcaagataaaaagaatactatatttcaatattagaatcactccatgtaaccttcaaaaca 1236

                                                                        
Query: 1237 atagtgaatctgttcgtaaattagaagaaattggtttcgataaaaatttttacatggaaa 1296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1237 atagtgaatctgttcgtaaattagaagaaattggtttcgataaaaatttttacatggaaa 1296

                                                                        
Query: 1297 aattagatttcactccaactgatggtttattctataatggtaatagagaaagtatttata 1356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1297 aattagatttcactccaactgatggtttattctataatggtaatagagaaagtatttata 1356

                                                                        
Query: 1357 ttcgttattatccaaattttgaaaagaaatttgatttatcttcaattcaagatatttttg 1416
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1357 ttcgttattatccaaattttgaaaagaaatttgatttatcttcaattcaagatatttttg 1416

                                                                        
Query: 1417 attcttatctttatattattaattattgcgaagataatccaaataaatttgaaatttcat 1476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1417 attcttatctttatattattaattattgcgaagataatccaaataaatttgaaatttcat 1476

                                                                        
Query: 1477 ttggaatgcaaagtgatctttgggatcatagagcattcaatttaactgatttccaattgg 1536
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1477 ttggaatgcaaagtgatctttgggatcatagagcattcaatttaactgatttccaattgg 1536

                                                                        
Query: 1537 ttaaaaatgttaatggaacttttgaaggtagtgccactagaaatcaaatcagtattatgg 1596
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1537 ttaaaaatgttaatggaacttttgaaggtagtgccactagaaatcaaatcagtattatgg 1596

                                                     
Query: 1597 ttttaattttatcagttttattagttttaattttataaaag 1637
            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1597 ttttaattttatcagttttattagttttaattttataaaag 1637


 Score =  858 bits (433), Expect = 0.0
 Identities = 440/441 (99%), Gaps = 1/441 (0%)
 Strand = Plus / Plus

                                                                        
Query: 697  atttcaatattagaatcactccatgtaaccttcaaaacaatagtgaatctgttcgtaaat 756
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1198 atttcaatattagaatcactccatgtaaccttcaaaacaatagtgaatctgttcgtaaat 1257

                                                                        
Query: 757  tagaagaaattggtttcgataaaaatttttacatggaaaaattagatttcactccaactg 816
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1258 tagaagaaattggtttcgataaaaatttttacatggaaaaattagatttcactccaactg 1317

                                                                        
Query: 817  atggtttattctataatggtaatagagaaagtatttatattcgttattatccaaattttg 876
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1318 atggtttattctataatggtaatagagaaagtatttatattcgttattatccaaattttg 1377

                                                                        
Query: 877  aaaagaaatttgatttatcttcaattcaagatatttttgattcttatctttatattatta 936
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1378 aaaagaaatttgatttatcttcaattcaagatatttttgattcttatctttatattatta 1437

                                                                        
Query: 937  attattgcgaagataatccaaataaatttgaaatttcatttggaatgcaaagtgatcttt 996
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1438 attattgcgaagataatccaaataaatttgaaatttcatttggaatgcaaagtgatcttt 1497

                                                                        
Query: 997  gggatcatagagcattcaatttaactgatttccaattgggttaaaaatgttaatggaact 1056
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1498 gggatcatagagcattcaatttaactgatttccaatt-ggttaaaaatgttaatggaact 1556

                                                                        
Query: 1057 tttgaaggtagtgccactagaaatcaaatcagtattatggttttaattttatcagtttta 1116
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1557 tttgaaggtagtgccactagaaatcaaatcagtattatggttttaattttatcagtttta 1616

                                 
Query: 1117 ttagttttaattttataaaag 1137
            |||||||||||||||||||||
Sbjct: 1617 ttagttttaattttataaaag 1637


 Score =  858 bits (433), Expect = 0.0
 Identities = 440/441 (99%), Gaps = 1/441 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1198 atttcaatattagaatcactccatgtaaccttcaaaacaatagtgaatctgttcgtaaat 1257
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697  atttcaatattagaatcactccatgtaaccttcaaaacaatagtgaatctgttcgtaaat 756

                                                                        
Query: 1258 tagaagaaattggtttcgataaaaatttttacatggaaaaattagatttcactccaactg 1317
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757  tagaagaaattggtttcgataaaaatttttacatggaaaaattagatttcactccaactg 816

                                                                        
Query: 1318 atggtttattctataatggtaatagagaaagtatttatattcgttattatccaaattttg 1377
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817  atggtttattctataatggtaatagagaaagtatttatattcgttattatccaaattttg 876

                                                                        
Query: 1378 aaaagaaatttgatttatcttcaattcaagatatttttgattcttatctttatattatta 1437
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877  aaaagaaatttgatttatcttcaattcaagatatttttgattcttatctttatattatta 936

                                                                        
Query: 1438 attattgcgaagataatccaaataaatttgaaatttcatttggaatgcaaagtgatcttt 1497
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937  attattgcgaagataatccaaataaatttgaaatttcatttggaatgcaaagtgatcttt 996

                                                                        
Query: 1498 gggatcatagagcattcaatttaactgatttccaatt-ggttaaaaatgttaatggaact 1556
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 997  gggatcatagagcattcaatttaactgatttccaattgggttaaaaatgttaatggaact 1056

                                                                        
Query: 1557 tttgaaggtagtgccactagaaatcaaatcagtattatggttttaattttatcagtttta 1616
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 tttgaaggtagtgccactagaaatcaaatcagtattatggttttaattttatcagtttta 1116

                                 
Query: 1617 ttagttttaattttataaaag 1637
            |||||||||||||||||||||
Sbjct: 1117 ttagttttaattttataaaag 1137


 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                              
Query: 1755 ccaanccggnntnggggttttantttnnccggttttttnggttttatttt 1804
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1755 ccaanccggnntnggggttttantttnnccggttttttnggttttatttt 1804


 Score = 42.1 bits (21), Expect = 0.003
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1677 tcaagataaaaagaatactat 1697
            |||||||||||||||||||||
Sbjct: 1177 tcaagataaaaagaatactat 1197


 Score = 42.1 bits (21), Expect = 0.003
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1177 tcaagataaaaagaatactat 1197
            |||||||||||||||||||||
Sbjct: 1677 tcaagataaaaagaatactat 1697


 Score = 42.1 bits (21), Expect = 0.003
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1677 tcaagataaaaagaatactat 1697
            |||||||||||||||||||||
Sbjct: 1677 tcaagataaaaagaatactat 1697


>Contig-U04455-1 (Contig-U04455-1Q) /CSM_Contig/Contig-U04455-1Q.Seq.d
          Length = 776

 Score = 40.1 bits (20), Expect = 0.012
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 1614 ttattagttttaattttataaaag 1637
            |||||| |||||||||||||||||
Sbjct: 619  ttattatttttaattttataaaag 596


 Score = 40.1 bits (20), Expect = 0.012
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 1114 ttattagttttaattttataaaag 1137
            |||||| |||||||||||||||||
Sbjct: 619  ttattatttttaattttataaaag 596


>Contig-U15346-1 (Contig-U15346-1Q) /CSM_Contig/Contig-U15346-1Q.Seq.d
          Length = 1484

 Score = 38.2 bits (19), Expect = 0.048
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 1403 tcaagatatttttgattct 1421
            |||||||||||||||||||
Sbjct: 518  tcaagatatttttgattct 536


 Score = 38.2 bits (19), Expect = 0.048
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 902 tcaagatatttttgattct 920
           |||||||||||||||||||
Sbjct: 518 tcaagatatttttgattct 536


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 42,626
Number of Sequences: 8402
Number of extensions: 42626
Number of successful extensions: 4728
Number of sequences better than 10.0: 119
length of query: 1867
length of database: 8,075,542
effective HSP length: 17
effective length of query: 1850
effective length of database: 7,932,708
effective search space: 14675509800
effective search space used: 14675509800
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 2. 2
Homology vs DNA 
Query= Contig-U15615-1 (Contig-U15615-1Q) /CSM_Contig/Contig-U15615-1Q.Seq.d
         (1867 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C91931) Dictyostelium discoideum slug cDNA, clone SSC278.       1007   0.0    4
(C91580) Dictyostelium discoideum slug cDNA, clone SSK471.        900   0.0    2
(C83876) Dictyostelium discoideum slug cDNA, clone SSA466.        862   0.0    2
(BJ389843) Dictyostelium discoideum cDNA clone:dds20c10, 5' ...   870   0.0    2
(BJ366438) Dictyostelium discoideum cDNA clone:ddc39a02, 5' ...   862   0.0    2
(AU051911) Dictyostelium discoideum slug cDNA, clone SSC380.      726   0.0    3
(C91034) Dictyostelium discoideum slug cDNA, clone SSJ402.        805   0.0    1
(AU037933) Dictyostelium discoideum slug cDNA, clone SSE468.      795   0.0    1
(C92559) Dictyostelium discoideum slug cDNA, clone SSE685.        785   0.0    1
(BJ326140) Dictyostelium discoideum cDNA clone:dda15l07, 5' ...   757   0.0    1
(C92212) Dictyostelium discoideum slug cDNA, clone SSD240.        698   0.0    1
(BJ326739) Dictyostelium discoideum cDNA clone:dda17h22, 5' ...   652   0.0    1
(AU039173) Dictyostelium discoideum slug cDNA, clone SSM474.      519   e-142  1
(AU073109) Dictyostelium discoideum slug cDNA, clone SSG159.      476   e-129  1
(AU073051) Dictyostelium discoideum slug cDNA, clone SSF802.      470   e-128  1
(C89985) Dictyostelium discoideum slug cDNA, clone SSG805.        315   3e-81  1
(AU072168) Dictyostelium discoideum slug cDNA, clone SSD574.      252   4e-62  1
(AU072423) Dictyostelium discoideum slug cDNA, clone SSE468.      137   2e-27  1
(C89700) Dictyostelium discoideum slug cDNA, clone SSG159.         88   1e-12  1
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    38   9e-05  21
(AC174365) Medicago truncatula chromosome 8 clone mth2-45k17...    42   7e-04  8
(AC150206) Medicago truncatula chromosome 8 clone mth2-78h5,...    42   0.005  6
(ER361094) 1092403996878 Global-Ocean-Sampling_GS-34-01-01-1...    42   0.010  2
(AZ674253) ENTKK08TR Entamoeba histolytica Sheared DNA Entam...    46   0.011  2
(AF494278) Chaetosphaeridium globosum chloroplast, complete ...    44   0.035  8
(CU695288) Brassica rapa subsp. pekinensis clone KBrH010J23,...    42   0.040  8
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)...    36   0.040  21
(AZ537835) ENTEE38TR Entamoeba histolytica Sheared DNA Entam...    36   0.048  3
(CG401842) ZMMBBb0243I07.r ZMMBBb Zea mays subsp. mays genom...    42   0.059  2
(ED202933) AUAC-aap53d09.b1 Ascaris suum whole genome shotgu...    38   0.12   2
(ED449000) AUAC-aab23c12.g1 Ascaris suum whole genome shotgu...    38   0.13   2
(BZ433884) BONJB48TR BO_1.6_2_KB_tot Brassica oleracea genom...    38   0.14   2
(BZ038206) ljl70h06.b1 B.oleracea002 Brassica oleracea genom...    38   0.14   2
(AC206968) Zea mays chromosome 2 clone CH201-350H16; ZMMBBc0...    42   0.18   3
(ER996563) ZMMBHo0002L02.f ZMMBHo Zea mays genomic clone ZMM...    42   0.18   2
(AC095957) Rattus norvegicus clone CH230-20L10, WORKING DRAF...    36   0.22   9
(AC178954) Strongylocentrotus purpuratus clone R3-3121I14, W...    36   0.25   8
(EI386766) POTC402TR Solanum tuberosum RHPOTKEY BAC ends Sol...    34   0.27   4
(AE017308) Mycoplasma mobile 163K complete genome.                 34   0.28   20
(AX348515) Sequence 23 from Patent WO0202809.                      38   0.29   4
(AX345520) Sequence 591 from Patent WO0200928.                     38   0.29   4
(EK132460) 1093010301066 Global-Ocean-Sampling_GS-31-01-01-1...    50   0.30   1
(AC153125) Medicago truncatula clone mth2-74f16, complete se...    34   0.42   11
(AE017332) Mycoplasma hyopneumoniae 232, complete genome.          40   0.42   17
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)...    34   0.43   22
(BK006340) TPA_exp: Drosophila virilis mitochondrion, comple...    34   0.47   7
(AC100343) Mus musculus clone RP23-127F11, LOW-PASS SEQUENCE...    40   0.53   2
(AM461944) Vitis vinifera contig VV78X085418.7, whole genome...    38   0.60   5
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    36   0.65   19
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    32   0.72   15
(DN566211) 90902659 Sea Urchin primary mesenchyme cell cDNA ...    36   0.84   2
(AC138012) Medicago truncatula clone mth2-9b15, complete seq...    40   0.85   2
(AA257765) MBAFCZ3H9T3 Brugia malayi adult female cDNA (SAW9...    36   0.91   2
(AX347076) Sequence 2147 from Patent WO0200928.                    34   0.99   12
(AC184309) Strongylocentrotus purpuratus clone R3-4012G22, W...    40   1.1    2
(AP009703) Lotus japonicus genomic DNA, chromosome 5, clone:...    42   1.2    4
(CR391910) Zebrafish DNA sequence from clone DKEY-108F8 in l...    36   1.2    9
(AL807755) Mouse DNA sequence from clone RP23-394N20 on chro...    48   1.2    1
(AC104547) Mus musculus clone RP23-227N21, LOW-PASS SEQUENCE...    48   1.2    1
(EK376951) 1095469444889 Global-Ocean-Sampling_GS-31-01-01-1...    48   1.2    1
(EK299842) 1095462360386 Global-Ocean-Sampling_GS-31-01-01-1...    48   1.2    1
(CV289492) aof01-3ms4-e04 Aof01 Asparagus officinalis cDNA c...    48   1.2    1
(CV287969) aof01-3ms3-a01 Aof01 Asparagus officinalis cDNA c...    48   1.2    1
(AC232691) Solanum tuberosum chromosome 6 clone RHPOTKEY034J...    46   1.3    4
(AC124019) Rattus norvegicus clone CH230-128F22, *** SEQUENC...    42   1.3    4
(CP000361) Arcobacter butzleri RM4018, complete genome.            34   1.4    19
(CU968958) Brassica napus GSS, clone JBnB175A22, end read, p...    40   1.4    2
(BH923008) odh07h03.b1 B.oleracea002 Brassica oleracea genom...    36   1.7    2
(BH995152) oek41e07.g1 B.oleracea002 Brassica oleracea genom...    36   1.7    2
(FH903341) CHO_ONF015xk02f1.ab1 CHO_ONF Nicotiana tabacum ge...    40   1.7    2
(FH216130) CHO_OF3265xh08r1.ab1 CHO_OF3 Nicotiana tabacum ge...    36   1.8    3
(FH011880) CHO_OF409xd24f2.ab1 CHO_OF Nicotiana tabacum geno...    40   1.8    2
(BH535527) BOHOK70TR BOHO Brassica oleracea genomic clone BO...    36   1.9    2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    30   1.9    20
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    36   2.0    21
(EJ399801) 1093012028679 Global-Ocean-Sampling_GS-28-01-01-1...    46   2.0    2
(AM481340) Vitis vinifera, whole genome shotgun sequence, co...    38   2.1    2
(DJ386694) Diagnosis of Diseases Associated with Metastasis.       42   2.2    4
(AX348844) Sequence 302 from Patent WO0202807.                     42   2.2    4
(AX281490) Sequence 154 from Patent WO0177376.                     42   2.2    4
(AC160252) Bos taurus clone CH240-90B19, WORKING DRAFT SEQUE...    36   2.4    2
(AC093817) Homo sapiens BAC clone RP11-364P22 from 4, comple...    32   2.4    7
(CV861438) gonad_EST08914 Embryonic gonad cDNA Library Gallu...    36   2.4    2
(BD452794) Diagnosis of Diseases Associated with tumor suppr...    36   2.5    5
(AX251273) Sequence 241 from Patent WO0168912.                     36   2.5    5
(AF114904) Saccharomyces pastorianus CBS1513 small subunit r...    36   3.0    3
(AF114918) Saccharomyces pastorianus CBS1503 small subunit r...    36   3.1    3
(BU766940) SJEALF05 SJE Schistosoma japonicum cDNA, mRNA seq...    34   3.2    2
(AF114927) Saccharomyces pastorianus CBS1538 small subunit r...    36   3.3    3
(CU695283) Brassica rapa subsp. pekinensis clone KBrH003E03,...    38   3.4    7
(AX346165) Sequence 1236 from Patent WO0200928.                    32   3.6    5
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         34   3.7    19
(AY904837) Gonioctena olivacea haplotype 80 control region, ...    36   4.0    2
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    34   4.0    9
(EU286785) Manduca sexta mitochondrion, complete genome.           38   4.0    6
(CS468864) Sequence 55 from Patent EP1748080.                      36   4.7    13
(CS419341) Sequence 55 from Patent WO2006094836.                   36   4.7    13
(AC157816) Mus musculus chromosome 3, clone RP24-255I19, com...    46   4.8    1
(AC134251) Mus musculus BAC clone RP23-430D14 from chromosom...    46   4.8    1
(AC102253) Mus musculus chromosome 3, clone RP24-175A24, com...    46   4.8    1
(AP008214) Oryza sativa (japonica cultivar-group) genomic DN...    46   4.8    1
(AP004459) Oryza sativa Japonica Group genomic DNA, chromoso...    46   4.8    1
(AM439399) Vitis vinifera, whole genome shotgun sequence, co...    46   4.8    1
(CQ870484) Sequence 905 from Patent WO2004074320.                  46   4.8    1
(AL590681) Human DNA sequence from clone RP11-163N15 on chro...    46   4.8    1
(AC116002) Homo sapiens chromosome 18, clone RP11-182L8, com...    46   4.8    1
(AC093761) Homo sapiens BAC clone RP11-89I4 from 4, complete...    46   4.8    1
(AC007277) Homo sapiens BAC clone RP11-244E6 from 2, complet...    46   4.8    1
(AC112376) Rattus norvegicus clone CH230-238F5, *** SEQUENCI...    46   4.8    1
(AC096810) Rattus norvegicus clone CH230-29L11, *** SEQUENCI...    46   4.8    1
(AC091687) Oryza sativa chromosome 9 clone BAC0091I24, *** S...    46   4.8    1
(CU302271) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   4.8    1
(AP001334) Homo sapiens genomic DNA, chromosome 18q21 clone:...    46   4.8    1
(AC210054) Zea mays chromosome 3 clone ZMMBBb-223G20; ZMMBBb...    46   4.8    1
(AC167986) Bos taurus clone CH240-218F12, WORKING DRAFT SEQU...    46   4.8    1
(BH154567) ENTSV89TR Entamoeba histolytica Sheared DNA Entam...    46   4.8    1
(AZ686543) ENTFN65TR Entamoeba histolytica Sheared DNA Entam...    46   4.8    1
(AQ546806) CITBI-E1-2629J6.TR CITBI-E1 Homo sapiens genomic ...    46   4.8    1
(ET207125) MUGQ_CH252P406K03T7_CP774_006 CHORI-252 Vervet Mo...    46   4.8    1
(ET087319) QM0AAA10DG07FM1 CCL1 Citrus clementina genomic cl...    46   4.8    1
(AQ147026) HS_2269_A1_C08_MF CIT Approved Human Genomic Sper...    46   4.8    1
(EJ341429) 1092963518655 Global-Ocean-Sampling_GS-28-01-01-1...    46   4.8    1
(EI805761) MUGQ_CH252P252M04T7_CN513_004 CHORI-252 Vervet Mo...    46   4.8    1
(CW015297) ZMMBLc0007H16.f ZMMBLc Zea mays genomic clone ZMM...    46   4.8    1
(CG195463) PUIDN28TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    46   4.8    1
(CC499429) CH240_336L6.TARBAC13P2 CHORI-240 Bos taurus genom...    46   4.8    1
(CC225380) CH261-174L15_Sp6.1 CH261 Gallus gallus genomic cl...    46   4.8    1
(EB803078) 3472_B05 Botrytis cinerea expressed sequence tags...    46   4.8    1
(BY418047) Mus musculus 13 days embryo liver cDNA, RIKEN ful...    46   4.8    1
(FD383464) Nad03b_97_D11_C005.g1 Nuphar advena flower bud li...    46   4.8    1
(FC842298) CBHN1922.fwd CBHN Metridium senile tentacle Metri...    46   4.8    1
(CP000975) Methylacidiphilum infernorum V4, complete genome.       46   4.8    1
(CS468863) Sequence 54 from Patent EP1748080.                      36   4.8    14
(CS419340) Sequence 54 from Patent WO2006094836.                   36   4.8    14
(AY654900) Kluyveromyces lactis mitochondrion, complete genome.    34   4.9    5
(AM648889) Entamoeba moshkovskii FIC GSS, clone mosh063b08.q1k.    34   4.9    3
(CD076259) MA3-0001U-M336-G03-U.G MA3-0001 Schistosoma manso...    36   5.1    2
(AC025454) Homo sapiens chromosome 5 clone CTD-2187E10, WORK...    34   5.5    8
(CX530973) s13dNF20A10MJ070_248087 Methyl Jasmonate-Elicited...    38   5.7    2
(CF662902) CcLX06a21p04f1 Carp mixed tissue library 3 Cyprin...    32   5.7    3
(AM651059) Entamoeba moshkovskii FIC GSS, clone mosh086d11.p1k.    34   6.0    3
(AM658500) Entamoeba moshkovskii FIC GSS, clone mosh080f08.q1k.    34   6.0    3
(AX458577) Sequence 123 from Patent WO0246454.                     38   6.1    8
(ES832814) UFL_372_20 Cotton fiber 0-10 day post anthesis Go...    38   6.3    2
(AC233119) Macaca mulatta chromosome Y clone CH250-385E12, W...    40   6.5    2
(EK519100) 1095515511630 Global-Ocean-Sampling_GS-32-01-01-1...    42   6.6    2
(EJ644370) 1093012202127 Global-Ocean-Sampling_GS-29-01-01-1...    44   6.6    2
(EY363448) CAWZ8780.rev CAWZ Helobdella robusta Primary Late...    36   6.7    2
(AL365200) Human DNA sequence *** SEQUENCING CANCELLED *** f...    40   6.7    4
(EK036492) 1092959464347 Global-Ocean-Sampling_GS-31-01-01-1...    38   6.9    2
(AX345776) Sequence 847 from Patent WO0200928.                     36   6.9    4
(BH157565) ENTRR63TF Entamoeba histolytica Sheared DNA Entam...    36   7.1    3
(CU639483) Zebrafish DNA sequence from clone CH1073-384O24 i...    40   7.3    5
(AP008177) Lotus japonicus genomic DNA, chromosome 5, clone:...    36   7.4    5
(EJ066282) 1095458042649 Global-Ocean-Sampling_GS-26-01-01-1...    44   7.4    2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    32   7.6    16
(AM473797) Vitis vinifera contig VV78X229517.4, whole genome...    38   7.7    3
(AC167742) Bos taurus clone CH240-201F20, WORKING DRAFT SEQU...    38   7.8    5
(FB571325) Sequence 192 from Patent EP1865317.                     32   8.1    14
(BX321875) Zebrafish DNA sequence from clone CH211-254C8 in ...    38   8.5    4
(AC124032) Rattus norvegicus clone CH230-243H23, *** SEQUENC...    34   8.7    2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    30   8.8    18
(AC151500) Dasypus novemcinctus clone VMRC5-182I5, WORKING D...    32   8.8    2
(AC171776) Dasypus novemcinctus clone VMRC5-375L20, WORKING ...    32   8.9    2
(CZ962571) 160446 Tomato MboI BAC Library Solanum lycopersic...    42   8.9    2
(AX323793) Sequence 281 from Patent WO0192565.                     34   9.0    4
(AX344552) Sequence 3 from Patent WO0200932.                       32   9.3    14
(AC223407) Macaca mulatta chromosome Y clone CH250-319I17, W...    38   9.5    2
(AX458543) Sequence 89 from Patent WO0246454.                      34   9.8    6
(EU493994) Drosophila fraburu voucher 109373 NADH dehydrogen...    38   9.9    3

>(C91931) Dictyostelium discoideum slug cDNA, clone SSC278.
          Length = 771

 Score = 1007 bits (508), Expect(4) = 0.0
 Identities = 517/520 (99%)
 Strand = Plus / Plus


Query: 516  aacctaccaaaggatttggtgaaaccaaaatctatgaaccagtagtttactctagaatta 575
            ||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||
Sbjct: 35   aacctaccaaaggatttggtgaacccaaagtctatgacccagtagtttactctagaatta 94


Query: 576  aagctccaagccggttataaatgtgattttaatccaggttttagaactagtcgtcgtgta 635
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95   aagctccaagccggttataaatgtgattttaatccaggttttagaactagtcgtcgtgta 154


Query: 636  cctgataaatatgcactccattcaaaatgtgcttgggcaaaggctctcttcccagccggt 695
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155  cctgataaatatgcactccattcaaaatgtgcttgggcaaaggctctcttcccagccggt 214


Query: 696  gatttcaatattagaatcactccatgtaaccttcaaaacaatagtgaatctgttcgtaaa 755
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215  gatttcaatattagaatcactccatgtaaccttcaaaacaatagtgaatctgttcgtaaa 274


Query: 756  ttagaagaaattggtttcgataaaaatttttacatggaaaaattagatttcactccaact 815
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275  ttagaagaaattggtttcgataaaaatttttacatggaaaaattagatttcactccaact 334


Query: 816  gatggtttattctataatggtaatagagaaagtatttatattcgttattatccaaatttt 875
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335  gatggtttattctataatggtaatagagaaagtatttatattcgttattatccaaatttt 394


Query: 876  gaaaagaaatttgatttatcttcaattcaagatatttttgattcttatctttatattatt 935
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395  gaaaagaaatttgatttatcttcaattcaagatatttttgattcttatctttatattatt 454


Query: 936  aattattgcgaagataatccaaataaatttgaaatttcatttggaatgcaaagtgatctt 995
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455  aattattgcgaagataatccaaataaatttgaaatttcatttggaatgcaaagtgatctt 514


Query: 996  tgggatcatagagcattcaatttaactgatttccaattgg 1035
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 515  tgggatcatagagcattcaatttaactgatttccaattgg 554

 Score =  194 bits (98), Expect(4) = 0.0
 Identities = 98/98 (100%)
 Strand = Plus / Plus


Query: 1035 ggttaaaaatgttaatggaacttttgaaggtagtgccactagaaatcaaatcagtattat 1094
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553  ggttaaaaatgttaatggaacttttgaaggtagtgccactagaaatcaaatcagtattat 612


Query: 1095 ggttttaattttatcagttttattagttttaattttat 1132
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 613  ggttttaattttatcagttttattagttttaattttat 650

 Score = 38.2 bits (19), Expect(4) = 0.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus


Query: 498 catggagtagatttatgaa 516
           |||||||||||||||||||
Sbjct: 18  catggagtagatttatgaa 36

 Score = 28.2 bits (14), Expect(4) = 0.0
 Identities = 14/14 (100%)
 Strand = Plus / Plus


Query: 479 ccagttgacatggt 492
           ||||||||||||||
Sbjct: 1   ccagttgacatggt 14

 Score =  862 bits (435), Expect = 0.0
 Identities = 435/435 (100%)
 Strand = Plus / Plus


Query: 1198 atttcaatattagaatcactccatgtaaccttcaaaacaatagtgaatctgttcgtaaat 1257
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216  atttcaatattagaatcactccatgtaaccttcaaaacaatagtgaatctgttcgtaaat 275


Query: 1258 tagaagaaattggtttcgataaaaatttttacatggaaaaattagatttcactccaactg 1317
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276  tagaagaaattggtttcgataaaaatttttacatggaaaaattagatttcactccaactg 335


Query: 1318 atggtttattctataatggtaatagagaaagtatttatattcgttattatccaaattttg 1377
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336  atggtttattctataatggtaatagagaaagtatttatattcgttattatccaaattttg 395


Query: 1378 aaaagaaatttgatttatcttcaattcaagatatttttgattcttatctttatattatta 1437
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396  aaaagaaatttgatttatcttcaattcaagatatttttgattcttatctttatattatta 455


Query: 1438 attattgcgaagataatccaaataaatttgaaatttcatttggaatgcaaagtgatcttt 1497
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456  attattgcgaagataatccaaataaatttgaaatttcatttggaatgcaaagtgatcttt 515


Query: 1498 gggatcatagagcattcaatttaactgatttccaattggttaaaaatgttaatggaactt 1557
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516  gggatcatagagcattcaatttaactgatttccaattggttaaaaatgttaatggaactt 575


Query: 1558 ttgaaggtagtgccactagaaatcaaatcagtattatggttttaattttatcagttttat 1617
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576  ttgaaggtagtgccactagaaatcaaatcagtattatggttttaattttatcagttttat 635


Query: 1618 tagttttaattttat 1632
            |||||||||||||||
Sbjct: 636  tagttttaattttat 650

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 2,083,307,792
Number of extensions: 131123205
Number of successful extensions: 10813117
Number of sequences better than 10.0: 172
Length of query: 1867
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1843
Effective length of database: 96,409,374,237
Effective search space: 177682476718791
Effective search space used: 177682476718791
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.17
Homology vs Protein 
Query= Contig-U15615-1 (Contig-U15615-1Q) /CSM_Contig/Contig-U15615-1Q.Seq.d
         (1867 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014186_159(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    35   7.2
AJ786640_1(AJ786640|pid:none) Nucula nucleus mRNA for hemocyanin...    35   9.4

>AE014186_159(AE014186|pid:none) Plasmodium falciparum 3D7
           chromosome 11, complete sequence.
           &AE014838_40(AE014838|pid:none)
          Length = 1739

 Score = 35.4 bits (80), Expect = 7.2
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
 Frame = +3

Query: 711 ITPCNLQNNSESVRKLEEIGFDKNFYMEKLDFTPTDGLFYNGNRESIYIRYYPNFE---- 878
           I   N QNN  ++ +L ++  DK + ++KL F  +  L YN  + SI   Y PNF
Sbjct: 131 INDVNDQNNLYNLNELYKV--DKLYNIDKLHFITSHYLAYNKMQNSILQFYIPNFNMNKI 188

Query: 879 KKFDLSSIQDIFDSYLYIINY 941
            KFD   I+ +  +Y + I+Y
Sbjct: 189 SKFD-KHIKGLNKTYHHSIHY 208

 Score = 35.4 bits (80), Expect = 7.2
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
 Frame = +3

Query: 1212 ITPCNLQNNSESVRKLEEIGFDKNFYMEKLDFTPTDGLFYNGNRESIYIRYYPNFE---- 1379
            I   N QNN  ++ +L ++  DK + ++KL F  +  L YN  + SI   Y PNF
Sbjct: 131  INDVNDQNNLYNLNELYKV--DKLYNIDKLHFITSHYLAYNKMQNSILQFYIPNFNMNKI 188

Query: 1380 KKFDLSSIQDIFDSYLYIINY 1442
             KFD   I+ +  +Y + I+Y
Sbjct: 189  SKFD-KHIKGLNKTYHHSIHY 208

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,288,824,553
Number of extensions: 45665227
Number of successful extensions: 105973
Number of sequences better than 10.0: 2
Number of HSP's gapped: 105561
Number of HSP's successfully gapped: 4
Length of query: 622
Length of database: 1,051,180,864
Length adjustment: 135
Effective length of query: 487
Effective length of database: 614,245,399
Effective search space: 299137509313
Effective search space used: 299137509313
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.67  gvh: 0.42  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.20  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U15615-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 2
SL (DIR, L) 0
SS (DIR, S) 12
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0