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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U03080-1
Contig ID Contig-U03080-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U03080-1 (Contig-U03080-1Q) /CSM_Contig/Contig-U03080-1Q.Seq.d
AGTTGGTACTAATTTAATTTTTACACAAAGAATTCAAAATTGGTGATCAA
TCAATTATTGGATTTTATATTACAGTGGCAAATTGTAGTAATTGTAGTAC
TCCATCACCAATGTTTTCAGTAACTGATCCAGCAGTTTATAGTCTTGCAG
CTGATAAAAATTATTTCTATTATTCAACTCGTAATGGTTTATTTAGAGTA
CCAATGAATGGTGATGTTAGTAAAAGAATGAAATTATCTGATAATCCAAA
TATTAAAGGTATCTTAAGAGATCAAACTTCCAGTGGAATTTATTATGCTA
GTAGTTTTGGTAATGGTTCTTCAATTATTAGAATTGATGCTATAGATTTT
AGAATTCAAACTCTCTATGACTATACTGGTGCTAGTAATCCTTCAACTTC
AACTGGTACCTGCCAATGTCTTTCTGCATTCACTGGTGATAATTGTTCAA
ATTGCAATGGTACTGTAAATTGGGAATCTAATCCANTTACAAATTCAAAT
TATCCAGTTTGTCATCCATTCTTACCGGATGGTTCAGTTTCATATTGTAA
TCAAGATTGGCAAT
Gap no gap
Contig length 564
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U03080
List of clone(s) 

est1=CFA634Z,1,565
Translated Amino Acid sequence 
lvli*FLHKEFKIGDQSIIGFYITVANCSNCSTPSPMFSVTDPAVYSLAADKNYFYYSTR
NGLFRVPMNGDVSKRMKLSDNPNIKGILRDQTSSGIYYASSFGNGSSIIRIDAIDFRIQT
LYDYTGASNPSTSTGTCQCLSAFTGDNCSNCNGTVNWESNPXTNSNYPVCHPFLPDGSVS
YCNQDWQ
Translated Amino Acid sequence (All Frames) 
Frame A:
swy*fnfytknsklvinqlldfilqwqivvivvlhhqcfq*liqqfivlqlikiisiiql
vmvyleyq*mvmlvke*nyliiqilkvs*eiklpvefimlvvlvmvlqllelml*ilefk
lsmtilvlvilqlqlvpanvflhslviivqiamvl*ignlixlqiqiiqfvihsyrmvqf
hivikign


Frame B:
vgtnliftqriqnw*sinywilyysgkl**l*ysitnvfsn*sssl*scs**klfllfns
*wfi*stnew*c**kneii**sky*rylkrsnfqwnllc**fw*wffny*n*cyrf*nsn
sl*lywc**sfnfnwylpmsfcihw**lfklqwycklgi*sxykfklsslssiltgwfsf
il*srla


Frame C:
lvli*FLHKEFKIGDQSIIGFYITVANCSNCSTPSPMFSVTDPAVYSLAADKNYFYYSTR
NGLFRVPMNGDVSKRMKLSDNPNIKGILRDQTSSGIYYASSFGNGSSIIRIDAIDFRIQT
LYDYTGASNPSTSTGTCQCLSAFTGDNCSNCNGTVNWESNPXTNSNYPVCHPFLPDGSVS
YCNQDWQ
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U03080-1 (Contig-U03080-1Q)
/CSM_Contig/Contig-U03080-1Q.Seq.d
         (564 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U03080-1 (Contig-U03080-1Q) /CSM_Contig/Conti...  1112  0.0
Contig-U01918-1 (Contig-U01918-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U12180-1 (Contig-U12180-1Q) /CSM_Contig/Conti...    36  0.039
Contig-U14238-1 (Contig-U14238-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U12851-1 (Contig-U12851-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U11368-1 (Contig-U11368-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U10414-1 (Contig-U10414-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U10335-1 (Contig-U10335-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U05274-1 (Contig-U05274-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U04995-1 (Contig-U04995-1Q) /CSM_Contig/Conti...    34  0.16

>Contig-U03080-1 (Contig-U03080-1Q) /CSM_Contig/Contig-U03080-1Q.Seq.d
          Length = 564

 Score = 1112 bits (561), Expect = 0.0
 Identities = 564/564 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttggtactaatttaatttttacacaaagaattcaaaattggtgatcaatcaattattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agttggtactaatttaatttttacacaaagaattcaaaattggtgatcaatcaattattg 60

                                                                       
Query: 61  gattttatattacagtggcaaattgtagtaattgtagtactccatcaccaatgttttcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gattttatattacagtggcaaattgtagtaattgtagtactccatcaccaatgttttcag 120

                                                                       
Query: 121 taactgatccagcagtttatagtcttgcagctgataaaaattatttctattattcaactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taactgatccagcagtttatagtcttgcagctgataaaaattatttctattattcaactc 180

                                                                       
Query: 181 gtaatggtttatttagagtaccaatgaatggtgatgttagtaaaagaatgaaattatctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtaatggtttatttagagtaccaatgaatggtgatgttagtaaaagaatgaaattatctg 240

                                                                       
Query: 241 ataatccaaatattaaaggtatcttaagagatcaaacttccagtggaatttattatgcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ataatccaaatattaaaggtatcttaagagatcaaacttccagtggaatttattatgcta 300

                                                                       
Query: 301 gtagttttggtaatggttcttcaattattagaattgatgctatagattttagaattcaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtagttttggtaatggttcttcaattattagaattgatgctatagattttagaattcaaa 360

                                                                       
Query: 361 ctctctatgactatactggtgctagtaatccttcaacttcaactggtacctgccaatgtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctctctatgactatactggtgctagtaatccttcaacttcaactggtacctgccaatgtc 420

                                                                       
Query: 421 tttctgcattcactggtgataattgttcaaattgcaatggtactgtaaattgggaatcta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tttctgcattcactggtgataattgttcaaattgcaatggtactgtaaattgggaatcta 480

                                                                       
Query: 481 atccanttacaaattcaaattatccagtttgtcatccattcttaccggatggttcagttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atccanttacaaattcaaattatccagtttgtcatccattcttaccggatggttcagttt 540

                                   
Query: 541 catattgtaatcaagattggcaat 564
           ||||||||||||||||||||||||
Sbjct: 541 catattgtaatcaagattggcaat 564


>Contig-U01918-1 (Contig-U01918-1Q) /CSM_Contig/Contig-U01918-1Q.Seq.d
          Length = 1761

 Score = 38.2 bits (19), Expect = 0.010
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 38   aattggtgatcaatcaatt 56
            |||||||||||||||||||
Sbjct: 1069 aattggtgatcaatcaatt 1087


>Contig-U12180-1 (Contig-U12180-1Q) /CSM_Contig/Contig-U12180-1Q.Seq.d
          Length = 793

 Score = 36.2 bits (18), Expect = 0.039
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 160 attatttctattattcaa 177
           ||||||||||||||||||
Sbjct: 726 attatttctattattcaa 709


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9030
Number of Sequences: 6905
Number of extensions: 9030
Number of successful extensions: 914
Number of sequences better than 10.0: 284
length of query: 564
length of database: 5,674,871
effective HSP length: 16
effective length of query: 548
effective length of database: 5,564,391
effective search space: 3049286268
effective search space used: 3049286268
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 5.25
Homology vs DNA 
Query= Contig-U03080-1 (Contig-U03080-1Q) /CSM_Contig/Contig-U03080-1Q.Seq.d
         (564 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ373228) Dictyostelium discoideum cDNA clone:ddc2c10, 3' e...  1112   0.0    1
(CU615575) Theobroma cacao, mRNA sequence (KZ0AAN4YB23FM1).        42   0.001  2
(FM177140) Lactobacillus casei BL23 complete genome, strain ...    50   0.092  1
(CP000423) Lactobacillus casei ATCC 334, complete genome.          50   0.092  1
(AL669966) Mouse DNA sequence from clone RP23-174K9 on chrom...    48   0.36   1
(CR547130) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***...    48   0.36   1
(AC024706) Homo sapiens BAC clone RP11-119J20 from 4, comple...    40   0.42   4
(AC167682) Daphnia pulex clone JGIAZSN-5C17, WORKING DRAFT S...    34   0.48   5
(FH607241) CHO_OF4931xc04f1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   1.4    1
(DU565269) OO__Ba0048N07.f OO__Ba Oryza officinalis genomic ...    46   1.4    1
(CZ118714) OA_BBa0004N23.f OA_BBa Oryza alta genomic clone O...    46   1.4    1
(AC172594) Bos taurus clone CH240-252I20, WORKING DRAFT SEQU...    38   1.8    4
(AG229007) Lotus japonicus DNA, clone:LjB17e21_r.                  38   1.9    2
(CU474871) Theobroma cacao, mRNA sequence (KZ0AAC3YA21FM1).        42   2.0    2
(DX107344) 644_2_14141685_5489_43320_041.ab1 Sugar beet unfi...    34   2.4    2
(EK034770) 1092959422061 Global-Ocean-Sampling_GS-31-01-01-1...    36   2.6    2
(AC099241) Rattus norvegicus clone CH230-216N20, WORKING DRA...    32   2.8    2
(AC116255) Rattus norvegicus clone CH230-113O4, WORKING DRAF...    32   2.8    2
(EK036629) 1092959464589 Global-Ocean-Sampling_GS-31-01-01-1...    36   2.9    2
(GO005448) LJGAP74TF JCVI-LJ1 Lotus japonicus cDNA 5', mRNA ...    32   3.8    2
(GO015406) LJGAP74TO JCVI-LJ1 Lotus japonicus cDNA 3', mRNA ...    32   3.8    2
(GO027793) LJMAF75TO JCVI-LJ2 Lotus japonicus cDNA 3', mRNA ...    32   3.8    2
(GO021534) LJMAF75TF JCVI-LJ2 Lotus japonicus cDNA 5', mRNA ...    32   3.8    2
(GO022766) LJMAS83TF JCVI-LJ2 Lotus japonicus cDNA 5', mRNA ...    32   3.8    2
(AY352277) Apis mellifera complementary sex determiner (csd)...    38   4.1    4
(CU856229) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   4.2    5
(AC116327) Mus musculus BAC clone RP24-68L14 from 7, complet...    38   4.4    5
(AC164974) Pan troglodytes BAC clone CH251-565G22 from chrom...    44   5.7    1
(AC110101) Rattus norvegicus clone CH230-211K5, *** SEQUENCI...    44   5.7    1
(AC095475) Rattus norvegicus clone CH230-7I5, *** SEQUENCING...    44   5.7    1
(AC229634) Monodelphis domestica clone VMRC18-366J16, WORKIN...    44   5.7    1
(AC222048) Bos taurus clone CH240-373M5, WORKING DRAFT SEQUE...    44   5.7    1
(AC220898) Bos taurus clone CH240-342B22, WORKING DRAFT SEQU...    44   5.7    1
(AC219252) Bos taurus clone CH240-334E2, WORKING DRAFT SEQUE...    44   5.7    1
(ER761438) SB_BBc138-P01.F SB_BBc Sorghum bicolor genomic 5'...    44   5.7    1
(DU946928) 401611 Tomato EcoRI BAC Library Solanum lycopersi...    44   5.7    1
(DU544396) OO__Ba0018H09.f OO__Ba Oryza officinalis genomic ...    44   5.7    1
(CZ673403) OM__Ba0229L16.r OM__Ba Oryza minuta genomic clone...    44   5.7    1
(CZ431739) OA_BBa0092O13.f OA_BBa Oryza alta genomic clone O...    44   5.7    1
(CZ134163) OA_BBa0027I20.r OA_BBa Oryza alta genomic clone O...    44   5.7    1
(CZ003346) OA_BBa0051K12.r OA_BBa Oryza alta genomic clone O...    44   5.7    1
(CW996502) OA_BBa0077G20.r OA_BBa Oryza alta genomic clone O...    44   5.7    1
(GE892546) 1112934511641 BABEVCEREB-C-01-1-7KB Papio anubis ...    44   5.7    1
(EY863587) CM30-C1-401-064-E08-CT.F Sweet lime leaf, infecte...    44   5.7    1
(AC129552) Mus musculus chromosome 5, clone RP24-122N24, com...    40   5.9    2
(AC223467) Bos taurus clone CH240-469A21, WORKING DRAFT SEQU...    34   6.2    4
(AC161377) Mus musculus BAC clone RP23-224D3 from chromosome...    40   6.7    4
(CU914736) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   6.8    2
(AC169688) Bos taurus clone CH240-215B4, WORKING DRAFT SEQUE...    34   7.2    3
(AC096083) Rattus norvegicus clone CH230-16F18, WORKING DRAF...    38   7.9    3

>(BJ373228) Dictyostelium discoideum cDNA clone:ddc2c10, 3' end,
           single read.
          Length = 565

 Score = 1112 bits (561), Expect = 0.0
 Identities = 564/564 (100%)
 Strand = Plus / Minus


Query: 1   agttggtactaatttaatttttacacaaagaattcaaaattggtgatcaatcaattattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agttggtactaatttaatttttacacaaagaattcaaaattggtgatcaatcaattattg 506


Query: 61  gattttatattacagtggcaaattgtagtaattgtagtactccatcaccaatgttttcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gattttatattacagtggcaaattgtagtaattgtagtactccatcaccaatgttttcag 446


Query: 121 taactgatccagcagtttatagtcttgcagctgataaaaattatttctattattcaactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taactgatccagcagtttatagtcttgcagctgataaaaattatttctattattcaactc 386


Query: 181 gtaatggtttatttagagtaccaatgaatggtgatgttagtaaaagaatgaaattatctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtaatggtttatttagagtaccaatgaatggtgatgttagtaaaagaatgaaattatctg 326


Query: 241 ataatccaaatattaaaggtatcttaagagatcaaacttccagtggaatttattatgcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataatccaaatattaaaggtatcttaagagatcaaacttccagtggaatttattatgcta 266


Query: 301 gtagttttggtaatggttcttcaattattagaattgatgctatagattttagaattcaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtagttttggtaatggttcttcaattattagaattgatgctatagattttagaattcaaa 206


Query: 361 ctctctatgactatactggtgctagtaatccttcaacttcaactggtacctgccaatgtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ctctctatgactatactggtgctagtaatccttcaacttcaactggtacctgccaatgtc 146


Query: 421 tttctgcattcactggtgataattgttcaaattgcaatggtactgtaaattgggaatcta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 tttctgcattcactggtgataattgttcaaattgcaatggtactgtaaattgggaatcta 86


Query: 481 atccanttacaaattcaaattatccagtttgtcatccattcttaccggatggttcagttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  atccanttacaaattcaaattatccagtttgtcatccattcttaccggatggttcagttt 26


Query: 541 catattgtaatcaagattggcaat 564
           ||||||||||||||||||||||||
Sbjct: 25  catattgtaatcaagattggcaat 2

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 706,457,685
Number of extensions: 43249008
Number of successful extensions: 3424605
Number of sequences better than 10.0: 51
Length of query: 564
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 541
Effective length of database: 99,442,330,388
Effective search space: 53798300739908
Effective search space used: 53798300739908
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.22
Homology vs Protein 
Query= Contig-U03080-1 (Contig-U03080-1Q) /CSM_Contig/Contig-U03080-1Q.Seq.d
         (564 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY392438_1(AY392438|pid:none) Dictyostelium discoideum tenascin ...    58   2e-07
AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromoso...    36   0.62
AE014296_1167(AE014296|pid:none) Drosophila melanogaster chromos...    36   0.80
L07288_1(L07288|pid:none) Drosophila melanogaster laminin A (Lam...    36   0.80
M96388_1(M96388|pid:none) Drosophila melanogaster laminin A chai...    36   0.80
BT032866_1(BT032866|pid:none) Drosophila melanogaster SD07123 fu...    36   0.80
(Q00174) RecName: Full=Laminin subunit alpha;          Short=Lam...    36   0.80
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso...    35   1.0
S00670(S00670;A26637) neurogenic repetitive locus delta protein ...    35   1.4
A31246(A31246)neurogenic protein Delta precursor - fruit fly (Dr...    35   1.4
AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso...    34   2.3
AY437163_1(AY437163|pid:none) Drosophila melanogaster isolate so...    34   2.3
AY437157_1(AY437157|pid:none) Drosophila melanogaster isolate so...    34   2.3
AY437211_1(AY437211|pid:none) Drosophila melanogaster isolate so...    34   2.3
AY437193_1(AY437193|pid:none) Drosophila melanogaster isolate so...    34   2.3
U15443_1(U15443|pid:none) Mus musculus proto-oncogene protein c-...    34   3.1
AF275723_1(AF275723|pid:none) Dictyostelium discoideum Ras guani...    34   3.1
AM910986_19(AM910986|pid:none) Plasmodium knowlesi strain H chro...    34   3.1
BC168665_1(BC168665|pid:none) Rattus norvegicus platelet endothe...    34   3.1
CP000678_1306(CP000678|pid:none) Methanobrevibacter smithii ATCC...    34   3.1
(Q78DX7) RecName: Full=Proto-oncogene tyrosine-protein kinase RO...    33   4.0
(Q60675) RecName: Full=Laminin subunit alpha-2; AltName: Full=La...    33   4.0
BC172647_1(BC172647|pid:none) Synthetic construct Mus musculus c...    33   4.0
AF003521_1(AF003521|pid:none) Homo sapiens Jagged 2 mRNA, comple...    33   5.2
AF029778_1(AF029778|pid:none) Homo sapiens Jagged2 (JAG2) mRNA, ...    33   5.2
(Q61789) RecName: Full=Laminin subunit alpha-3; AltName: Full=Ni...    33   5.2
AF029779_1(AF029779|pid:none) Homo sapiens hJAG2.del-E6 (JAG2) m...    33   5.2
U88353_1(U88353|pid:none) Mus musculus laminin alpha 3B chain (L...    33   5.2
AF020201_1(AF020201|pid:none) Homo sapiens Jagged 2 mRNA, comple...    33   5.2
Y14330_1(Y14330|pid:none) Homo sapiens partial mRNA for jagged2 ...    33   5.2
AC115598_37(AC115598|pid:none) Dictyostelium discoideum chromoso...    33   6.8
AY159040_1(AY159040|pid:none) Dictyostelium discoideum LvsD (lvs...    33   6.8
AY862413_1(AY862413|pid:none) Danio rerio laminin alpha 1 mRNA, ...    33   6.8
AC116982_52(AC116982|pid:none) Dictyostelium discoideum chromoso...    33   6.8
AY437145_1(AY437145|pid:none) Drosophila melanogaster isolate so...    33   6.8
BC122943_1(BC122943|pid:none) Xenopus tropicalis E74-like factor...    33   6.8
AY437205_1(AY437205|pid:none) Drosophila melanogaster isolate so...    33   6.8
AC116967_8(AC116967|pid:none) Dictyostelium discoideum chromosom...    33   6.8
DQ131910_1(DQ131910|pid:none) Danio rerio laminin alpha 1 mRNA, ...    33   6.8
CP001056_3255(CP001056|pid:none) Clostridium botulinum B str. Ek...    32   8.9
AY327116_1(AY327116|pid:none) Homo sapiens laminin alpha 3 splic...    32   8.9
AB001074_1(AB001074|pid:none) Caenorhabditis elegans mRNA for la...    32   8.9
AE014298_418(AE014298|pid:none) Drosophila melanogaster chromoso...    32   8.9
(Q16787) RecName: Full=Laminin subunit alpha-3; AltName: Full=Ep...    32   8.9
AE014298_423(AE014298|pid:none) Drosophila melanogaster chromoso...    32   8.9
AE001438_3(AE001438|pid:none) Clostridium acetobutylicum ATCC 82...    32   8.9
AE014298_417(AE014298|pid:none) Drosophila melanogaster chromoso...    32   8.9
AE014298_420(AE014298|pid:none) Drosophila melanogaster chromoso...    32   8.9
Z70286_4(Z70286|pid:none) Caenorhabditis elegans Cosmid K08C7, c...    32   8.9
CU928180_533(CU928180|pid:none) Kluyveromyces thermotolerans str...    32   8.9
DQ314737_1(DQ314737|pid:none) Danio rerio crumbs-like protein 2b...    32   8.9
EF444992_1(EF444992|pid:none) Homo sapiens laminin alpha-3 chain...    32   8.9
CU928178_107(CU928178|pid:none) Zygosaccharomyces rouxii strain ...    32   8.9
AL138972_3(AL138972|pid:none) Drosophila melanogaster BAC clone ...    32   8.9
AB098194_1(AB098194|pid:none) Codonosiga gracilis CgPTK-f mRNA f...    32   8.9
(Q21313) RecName: Full=Laminin-like protein epi-1; Flags: Precur...    32   8.9
AE008923_3279(AE008923|pid:none) Xanthomonas axonopodis pv. citr...    32   8.9
AE014298_419(AE014298|pid:none) Drosophila melanogaster chromoso...    32   8.9

>AY392438_1(AY392438|pid:none) Dictyostelium discoideum tenascin X
           gene, complete cds.
          Length = 426

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 47/168 (27%), Positives = 68/168 (40%), Gaps = 7/168 (4%)
 Frame = +3

Query: 81  NCSNCSTPSPMFSVTDP------AVYSLAADKNYFYYSTRNGLFRVPMNGDVSKRMKLSD 242
           NC NC+       VTD       +V   A   +Y Y+S   G+   P NGD S+  KL
Sbjct: 223 NCLNCTKDQLQLLVTDSELASATSVSGFALTSDYMYFSYSGGIKGYPKNGDASRVRKLV- 281

Query: 243 NPNIKGILRDQTSSGIYYASSFGNGSSIIRIDAIDFRIQTLYDYTGASNPSTSTGTCQCL 422
           + N+  ++       +YY +  G   S +       ++  LY          S   CQC
Sbjct: 282 SENVVAMI--SNGDFLYYQTDSGVVKS-VSTSGNHPQVNILY-------TPVSDNQCQCS 331

Query: 423 SAFTGDNCSNC-NGTVNWESNPXTNSNYPVCHPFLPDGSVSYCNQDWQ 563
             F+GD+C  C NG V W S    ++  P+C P    G    C   +Q
Sbjct: 332 VGFSGDDCRQCDNGMVLWAS----DNGIPMCSPLNSLGKPKTCYAAYQ 375

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 768,313,761
Number of extensions: 14143783
Number of successful extensions: 35600
Number of sequences better than 10.0: 58
Number of HSP's gapped: 35542
Number of HSP's successfully gapped: 60
Length of query: 188
Length of database: 1,051,180,864
Length adjustment: 121
Effective length of query: 67
Effective length of database: 659,557,225
Effective search space: 44190334075
Effective search space used: 44190334075
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.93  gvh: 0.48  alm: 0.47  top: 0.37  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  8.0 %: endoplasmic reticulum

>> prediction for Contig-U03080-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0