| Contig-U15593-1 |
| Contig ID |
Contig-U15593-1 |
| Contig update |
2004. 6.11 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
1882 |
| Chromosome number (1..6, M) |
2 |
| Chromosome length |
8467578 |
| Start point |
7620456 |
| End point |
7621533 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
7 |
| Number of EST |
9 |
| Link to clone list |
U15593 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.23 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 2. 1 |
| Homology vs DNA |
Query= Contig-U15593-1 (Contig-U15593-1Q) /CSM_Contig/Contig-U15593-1Q.Seq.d
(1892 letters)
Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 1481 0.0 1
(BJ342480) Dictyostelium discoideum cDNA clone:dda14o05, 3' ... 1443 0.0 1
(BJ442089) Dictyostelium discoideum cDNA clone:ddv48f21, 3' ... 1366 0.0 1
(BJ325390) Dictyostelium discoideum cDNA clone:dda14o05, 5' ... 1134 0.0 1
(BJ379008) Dictyostelium discoideum cDNA clone:ddc33c14, 3' ... 1116 0.0 1
(BJ376020) Dictyostelium discoideum cDNA clone:ddc20l22, 3' ... 1041 0.0 4
(BJ377884) Dictyostelium discoideum cDNA clone:ddc26d10, 3' ... 1063 0.0 1
(BJ381416) Dictyostelium discoideum cDNA clone:ddc41o11, 3' ... 894 0.0 2
(AU037102) Dictyostelium discoideum slug cDNA, clone SSB450. 523 e-149 3
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 38 0.009 12
(AM470919) Vitis vinifera contig VV78X041036.15, whole genom... 40 0.11 2
(AM451165) Vitis vinifera, whole genome shotgun sequence, co... 40 0.14 2
(AM480767) Vitis vinifera, whole genome shotgun sequence, co... 40 0.23 2
(AK262087) Gryllus bimaculatus mRNA, GBcontig08948. 50 0.31 1
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771... 38 0.33 9
(BV786526) pRRL2:Newb:20080411:155613 USMARC Pig Breed SNP D... 36 0.47 2
(CU469416) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 0.53 7
(CU457414) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 1.0 10
(CU856218) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 1.1 7
(CU914641) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 1.1 7
(CT009681) Pan troglodytes chromosome X BAC PTB-134F20. 48 1.2 1
(AL031542) Human DNA sequence from clone RP5-1147O16 on chro... 48 1.2 1
(AC012042) Homo sapiens chromosome X clone RP11-45N17, WORKI... 48 1.2 1
(ES190687) 235551_3187_2473 Arabidopsis ovule high throughpu... 48 1.2 1
(AM963274) Sparus aurata EST, clone cDN06P0006H22, 5'-end se... 48 1.2 1
(CZ887339) fbnb003e004e11f1 Brassica napus methylation filte... 36 1.4 2
(CU855870) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 1.5 5
(CX192670) 39-E024299-021-023-M09-frev ADIS-MPIZ 021 Brassic... 36 1.5 2
(ES430507) Plate_32b_E08 Hibernating 13-lined squirrel brain... 36 1.6 2
(FH368549) CHO_OF4514xe19r1.ab1 CHO_OF4 Nicotiana tabacum ge... 36 1.6 3
(FH369223) CHO_OF4512xo01r1.ab1 CHO_OF4 Nicotiana tabacum ge... 36 1.7 2
(EV154779) 0078640 Brassica napus Bud library Brassica napus... 36 1.8 2
(EV154861) 0078722 Brassica napus Bud library Brassica napus... 36 1.8 2
(EV157959) 0081821 Brassica napus Bud library Brassica napus... 36 1.8 2
(EV158929) 0082791 Brassica napus Bud library Brassica napus... 36 1.8 2
(ER863541) PPTJE46TR Solanum tuberosum RHPOTKEY BAC ends Sol... 40 1.9 2
(EV159866) 0083728 Brassica napus Bud library Brassica napus... 36 1.9 2
(EV160383) 0084245 Brassica napus Bud library Brassica napus... 36 1.9 2
(AC139683) Homo sapiens chromosome 17 clone RP11-604I11 map ... 38 2.0 3
(DN116987) 1116609 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence. 36 2.0 2
(CT388038) Sus scrofa genomic clone CH242-393B17, genomic su... 38 2.0 2
(DQ366715) Uncultured Prochlorococcus marinus clone ASNC2259... 42 2.0 4
(DN116640) 1116225 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence. 36 2.1 2
(CU463006) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 2.1 6
(CU896685) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 2.2 8
(AC198072) Lottia scutum clone JGIAZYH-9G9, complete sequence. 44 2.3 3
(AC218593) Bos taurus clone CH240-311E17, WORKING DRAFT SEQU... 38 2.5 5
(FP090896) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 2.6 8
(CU694580) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 2.9 6
(X96407) B.oleracea mRNA for pollen coat oleosin, clone bopc3. 36 3.2 2
(CU571181) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 3.3 7
(CU463960) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 3.5 7
(L33282) Brassica napus clone STA 41-2 mRNA, complete cds. 36 3.7 2
(DN488601) S014D11.3pR Populus imbibed seed cDNA library Pop... 32 3.7 3
(CU468909) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 3.9 9
(BU862343) S014D11 Populus imbibed seed cDNA library Populus... 32 4.1 3
(DN498290) S014D11.5pR Populus imbibed seed cDNA library Pop... 32 4.2 3
(CU481233) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 4.6 7
(AC138175) Mus musculus chromosome 5, clone RP23-4L6, comple... 46 4.8 1
(AC130828) Mus musculus BAC clone RP23-406H14 from chromosom... 46 4.8 1
(AC109140) Mus musculus chromosome 5, clone RP23-153N23, com... 46 4.8 1
(AL365207) Human DNA sequence from clone RP11-420O24 on chro... 46 4.8 1
(AL360085) Human DNA sequence from clone RP11-505K1 on chrom... 46 4.8 1
(AC218774) Bos taurus clone CH240-294E21, WORKING DRAFT SEQU... 46 4.8 1
(AC185934) Bos taurus clone RP42-61J10, WORKING DRAFT SEQUEN... 46 4.8 1
(AC022797) Homo sapiens chromosome 6 clone RP11-281G13 map 6... 46 4.8 1
(ED882076) OA_CBa0029K11.f OA_CBa Oryza australiensis genomi... 46 4.8 1
(DU248726) 1098580002435 CHORI-243 Ovis aries genomic clone ... 46 4.8 1
(AC222867) Bos taurus clone CH240-436D24, WORKING DRAFT SEQU... 40 5.2 9
(EV880481) rdbla0133_l15.y1 bla Sus scrofa cDNA 5', mRNA seq... 36 5.4 2
(CU074294) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 6.1 7
(CU469176) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 6.8 6
(AC104937) Homo sapiens chromosome 8 clone RP1-252K6 map 8, ... 42 7.1 3
(CU405715) Pig DNA sequence from clone CH242-232D1 on chromo... 34 7.1 9
(CU928769) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 7.3 8
(CU606860) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 7.6 5
(CU606948) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 8.6 6
(AC194579) Rhesus Macaque BAC CH250-8H22 () complete sequence. 34 8.6 2
(AC187933) Aotus nancymaae clone CH258-244M7, WORKING DRAFT ... 34 8.8 2
(CS351113) Sequence 497 from Patent WO2006013561. 34 9.0 2
(CS350770) Sequence 154 from Patent WO2006013561. 34 9.0 2
(AL031775) Human DNA sequence from clone RP1-30M3 on chromos... 34 9.0 2
(FP090912) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 9.6 9
(CU928861) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 9.7 8
>(AC116977) Dictyostelium discoideum chromosome 2 map 5515173-5817331
strain AX4, complete sequence.
Length = 302156
Score = 1481 bits (747), Expect = 0.0
Identities = 747/747 (100%)
Strand = Plus / Plus
Query: 1083 tcctgaaggtttcctaccctctacaaacgttcaagtcattaataatacaattcgtggtga 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28514 tcctgaaggtttcctaccctctacaaacgttcaagtcattaataatacaattcgtggtga 28573
Query: 1143 ttgggattattcgttaaccactgagggtggcaatcaatgtacagttagtaataatgatat 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28574 ttgggattattcgttaaccactgagggtggcaatcaatgtacagttagtaataatgatat 28633
Query: 1203 ccaaggtagttgtatttgtggtatcattgaaagaggtaccggtattaaagtttcaaataa 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28634 ccaaggtagttgtatttgtggtatcattgaaagaggtaccggtattaaagtttcaaataa 28693
Query: 1263 tacaattcatatcattggaagagagaaagaaggtcaaactgaaccaaccggaattcaatt 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28694 tacaattcatatcattggaagagagaaagaaggtcaaactgaaccaaccggaattcaatt 28753
Query: 1323 ttatggtgtagacaatggtgaaatctcaaataactccatcatgggtagtgctaaatatgc 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28754 ttatggtgtagacaatggtgaaatctcaaataactccatcatgggtagtgctaaatatgc 28813
Query: 1383 cattctaattaaaccatcacatgaaagtggaggtgcttcaaactctgtagttgagaacaa 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28814 cattctaattaaaccatcacatgaaagtggaggtgcttcaaactctgtagttgagaacaa 28873
Query: 1443 taccatcgatggcgaattctataattgtatatttatgtcaaatgcaaatcaagctaaaat 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28874 taccatcgatggcgaattctataattgtatatttatgtcaaatgcaaatcaagctaaaat 28933
Query: 1503 ccatggaaatgtagttatgggtaaaagtgatgttgactcttgtgttggtcttcaagtatg 1562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28934 ccatggaaatgtagttatgggtaaaagtgatgttgactcttgtgttggtcttcaagtatg 28993
Query: 1563 gtattccaatggtttagatattcaaggtaataatatagatttaccatcaggtacagcttg 1622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28994 gtattccaatggtttagatattcaaggtaataatatagatttaccatcaggtacagcttg 29053
Query: 1623 tatttgttcaggtgctaaaaatgtaaatgtcctctcaaatactatgatgacttcaagagc 1682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29054 tatttgttcaggtgctaaaaatgtaaatgtcctctcaaatactatgatgacttcaagagc 29113
Query: 1683 tggcttttatatttgtcaaggtagtgatgatatttgtatagaaaataatgatttaattgg 1742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29114 tggcttttatatttgtcaaggtagtgatgatatttgtatagaaaataatgatttaattgg 29173
Query: 1743 tgttactcaaactaaatttgatcaatcgtccgataataaatctgttacaactagtcaaaa 1802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29174 tgttactcaaactaaatttgatcaatcgtccgataataaatctgttacaactagtcaaaa 29233
Query: 1803 ttatggtttagattacaatccaccatc 1829
|||||||||||||||||||||||||||
Sbjct: 29234 ttatggtttagattacaatccaccatc 29260
Score = 1134 bits (572), Expect = 0.0
Identities = 572/572 (100%)
Strand = Plus / Plus
Query: 1 tattttaatacctttccaaccaatgttattaatataccacctggtaattatttaataact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27954 tattttaatacctttccaaccaatgttattaatataccacctggtaattatttaataact 28013
Query: 61 gctccattgatcattaaaaagaataatattcaattaatgggttcaccaaatgtaaagttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28014 gctccattgatcattaaaaagaataatattcaattaatgggttcaccaaatgtaaagttt 28073
Query: 121 ttaactaatttcccaatttggttaacaccaccactttccgaaggttttattaatacagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28074 ttaactaatttcccaatttggttaacaccaccactttccgaaggttttattaatacagaa 28133
Query: 181 gagtatgtattcgtattgactggtgataacattgtactggactcaattaattgttcatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28134 gagtatgtattcgtattgactggtgataacattgtactggactcaattaattgttcatgt 28193
Query: 241 ataactgctggtagtttatcatcatcatttttatatctctgtggtaacggtttcataatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28194 ataactgctggtagtttatcatcatcatttttatatctctgtggtaacggtttcataatg 28253
Query: 301 agaaattgtatcattgataatttcaatcaaggtgttgtatttggtatactaaatgattgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28254 agaaattgtatcattgataatttcaatcaaggtgttgtatttggtatactaaatgattgc 28313
Query: 361 agtggtaaaattccacctggtagtcatttcacaaatatcaaaatcacagcaaaccaaatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28314 agtggtaaaattccacctggtagtcatttcacaaatatcaaaatcacagcaaaccaaatc 28373
Query: 421 acaaatgtaatgggtattgcaggtggtagtatatgttacggcgatggtatttcctttttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28374 acaaatgtaatgggtattgcaggtggtagtatatgttacggcgatggtatttcctttttt 28433
Query: 481 ggttgttcaaatgtagtaatctcaaataatttcgtatcggcaaaggatggattcacacct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28434 ggttgttcaaatgtagtaatctcaaataatttcgtatcggcaaaggatggattcacacct 28493
Query: 541 agaaatggtataaacagtggtcctgaaggttt 572
||||||||||||||||||||||||||||||||
Sbjct: 28494 agaaatggtataaacagtggtcctgaaggttt 28525
Score = 993 bits (501), Expect = 0.0
Identities = 501/501 (100%)
Strand = Plus / Plus
Query: 583 tcctgaaggtttcctaccctctacaaacgttcaagtcattaataatacaattcgtggtga 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28514 tcctgaaggtttcctaccctctacaaacgttcaagtcattaataatacaattcgtggtga 28573
Query: 643 ttgggattattcgttaaccactgagggtggcaatcaatgtacagttagtaataatgatat 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28574 ttgggattattcgttaaccactgagggtggcaatcaatgtacagttagtaataatgatat 28633
Query: 703 ccaaggtagttgtatttgtggtatcattgaaagaggtaccggtattaaagtttcaaataa 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28634 ccaaggtagttgtatttgtggtatcattgaaagaggtaccggtattaaagtttcaaataa 28693
Query: 763 tacaattcatatcattggaagagagaaagaaggtcaaactgaaccaaccggaattcaatt 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28694 tacaattcatatcattggaagagagaaagaaggtcaaactgaaccaaccggaattcaatt 28753
Query: 823 ttatggtgtagacaatggtgaaatctcaaataactccatcatgggtagtgctaaatatgc 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28754 ttatggtgtagacaatggtgaaatctcaaataactccatcatgggtagtgctaaatatgc 28813
Query: 883 cattctaattaaaccatcacatgaaagtggaggtgcttcaaactctgtagttgagaacaa 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28814 cattctaattaaaccatcacatgaaagtggaggtgcttcaaactctgtagttgagaacaa 28873
Query: 943 taccatcgatggcgaattctataattgtatatttatgtcaaatgcaaatcaagctaaaat 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28874 taccatcgatggcgaattctataattgtatatttatgtcaaatgcaaatcaagctaaaat 28933
Query: 1003 ccatggaaatgtagttatgggtaaaagtgatgttgactcttgtgttggtcttcaagtatg 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28934 ccatggaaatgtagttatgggtaaaagtgatgttgactcttgtgttggtcttcaagtatg 28993
Query: 1063 gtattccaatggtttagatat 1083
|||||||||||||||||||||
Sbjct: 28994 gtattccaatggtttagatat 29014
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 2,122,128,128
Number of extensions: 126861671
Number of successful extensions: 11194199
Number of sequences better than 10.0: 84
Length of query: 1892
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1868
Effective length of database: 96,409,374,237
Effective search space: 180092711074716
Effective search space used: 180092711074716
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7.17 |
| Homology vs Protein |
Query= Contig-U15593-1 (Contig-U15593-1Q) /CSM_Contig/Contig-U15593-1Q.Seq.d
(1892 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE008384_66(AE008384|pid:none) Methanosarcina mazei strain Goe1,... 50 4e-08
CU459003_516(CU459003|pid:none) Magnetospirillum gryphiswaldense... 53 4e-05
AE010299_3020(AE010299|pid:none) Methanosarcina acetivorans str.... 50 2e-04
CP000678_282(CP000678|pid:none) Methanobrevibacter smithii ATCC ... 50 3e-04
AE008384_3318(AE008384|pid:none) Methanosarcina mazei strain Goe... 50 3e-04
BA000039_1036(BA000039|pid:none) Thermosynechococcus elongatus B... 34 5e-04
CP000099_2078(CP000099|pid:none) Methanosarcina barkeri str. Fus... 40 0.002
CR378677_262(CR378677|pid:none) Photobacterium profundum SS9 chr... 47 0.003
CP000742_1269(CP000742|pid:none) Methanococcus vannielii SB, com... 46 0.005
CP000300_64(CP000300|pid:none) Methanococcoides burtonii DSM 624... 45 0.007
CP000678_51(CP000678|pid:none) Methanobrevibacter smithii ATCC 3... 45 0.007
CP000745_1783(CP000745|pid:none) Methanococcus maripaludis C7, c... 37 0.007
BX950229_275(BX950229|pid:none) Methanococcus maripaludis strain... 45 0.009
CP000099_2832(CP000099|pid:none) Methanosarcina barkeri str. Fus... 38 0.012
BX572598_256(BX572598|pid:none) Rhodopseudomonas palustris CGA00... 35 0.012
(Q58791) RecName: Full=Uncharacterized protein MJ1396; &C64474(... 44 0.016
AE010299_1910(AE010299|pid:none) Methanosarcina acetivorans str.... 44 0.021
CP000745_1269(CP000745|pid:none) Methanococcus maripaludis C7, c... 44 0.027
AY714854_36(AY714854|pid:none) Uncultured archaeon GZfos32E4 clo... 36 0.044
CP000821_500(CP000821|pid:none) Shewanella sediminis HAW-EB3, co... 43 0.046
AF047429_3(AF047429|pid:none) Achromobacter cycloclastes regulat... 43 0.046
CP000102_931(CP000102|pid:none) Methanosphaera stadtmanae DSM 30... 37 0.054
AM114193_1137(AM114193|pid:none) Uncultured methanogenic archaeo... 42 0.078
S16375(S16375;S26144;S26098;S21874)surface-layer glycoprotein pr... 42 0.078
CP000360_662(CP000360|pid:none) Acidobacteria bacterium Ellin345... 42 0.078
(P27374) RecName: Full=Cell surface glycoprotein; AltName: Full=... 42 0.078
(P27373) RecName: Full=Cell surface glycoprotein; AltName: Full=... 42 0.078
CP000867_668(CP000867|pid:none) Methanococcus maripaludis C6, co... 42 0.10
CP000300_1519(CP000300|pid:none) Methanococcoides burtonii DSM 6... 42 0.10
CP000102_881(CP000102|pid:none) Methanosphaera stadtmanae DSM 30... 42 0.10
CP000477_773(CP000477|pid:none) Methanosaeta thermophila PT, com... 41 0.17
CP000477_1184(CP000477|pid:none) Methanosaeta thermophila PT, co... 41 0.17
AE010299_2898(AE010299|pid:none) Methanosarcina acetivorans str.... 41 0.17
CP000102_1351(CP000102|pid:none) Methanosphaera stadtmanae DSM 3... 40 0.23
FJ230960_101(FJ230960|pid:none) Bacillus phage SPO1, complete ge... 40 0.23
CP000510_1373(CP000510|pid:none) Psychromonas ingrahamii 37, com... 40 0.23
CP000102_139(CP000102|pid:none) Methanosphaera stadtmanae DSM 30... 40 0.30
AP009386_1606(AP009386|pid:none) Burkholderia multivorans ATCC 1... 40 0.30
(O31912) RecName: Full=SPBc2 prophage-derived uncharacterized pr... 40 0.30
CP000383_3393(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 40 0.37
CP000440_2420(CP000440|pid:none) Burkholderia ambifaria AMMD chr... 40 0.39
AB043873_1(AB043873|pid:none) Chondrostereum purpureum cppg1 gen... 40 0.39
CP000820_7132(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 40 0.39
CP000662_180(CP000662|pid:none) Rhodobacter sphaeroides ATCC 170... 40 0.39
EF554314_1(EF554314|pid:none) Helobdella sp. MS-2000 transcripti... 40 0.39
CP000477_46(CP000477|pid:none) Methanosaeta thermophila PT, comp... 40 0.39
AE010299_1468(AE010299|pid:none) Methanosarcina acetivorans str.... 40 0.39
CP000102_420(CP000102|pid:none) Methanosphaera stadtmanae DSM 30... 40 0.39
AY596297_346(AY596297|pid:none) Haloarcula marismortui ATCC 4304... 39 0.66
CP001074_2692(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 39 0.66
CU207366_1391(CU207366|pid:none) Gramella forsetii KT0803 comple... 39 0.66
CP000851_485(CP000851|pid:none) Shewanella pealeana ATCC 700345,... 39 0.66
CP000441_408(CP000441|pid:none) Burkholderia ambifaria AMMD chro... 39 0.66
CP001037_5009(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 39 0.66
CP000686_757(CP000686|pid:none) Roseiflexus sp. RS-1, complete g... 39 0.66
CP000102_1071(CP000102|pid:none) Methanosphaera stadtmanae DSM 3... 33 0.85
CP001616_1402(CP001616|pid:none) Tolumonas auensis DSM 9187, com... 39 0.87
AY714833_6(AY714833|pid:none) Uncultured archaeon GZfos1D1 clone... 39 0.87
CP000653_2100(CP000653|pid:none) Enterobacter sp. 638, complete ... 39 0.87
CP001115_191(CP001115|pid:none) Deinococcus deserti VCD115 plasm... 39 0.87
A69222(A69222) hypothetical protein MTH911 - Methanobacterium th... 38 1.1
AY714866_37(AY714866|pid:none) Uncultured archaeon GZfos36D8 clo... 38 1.1
AE000666_712(AE000666|pid:none) Methanothermobacter thermautotro... 38 1.1
AE010299_2808(AE010299|pid:none) Methanosarcina acetivorans str.... 38 1.1
F69195(F69195)cell surface glycoprotein (s-layer protein) - Meth... 38 1.1
AE008384_1840(AE008384|pid:none) Methanosarcina mazei strain Goe... 38 1.1
(P38894) RecName: Full=Flocculation protein FLO5; Short... 38 1.5
AL844509_625(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 38 1.5
AE017333_416(AE017333|pid:none) Bacillus licheniformis DSM 13, c... 38 1.5
CP000655_1089(CP000655|pid:none) Polynucleobacter necessarius su... 37 1.9
AE001437_3495(AE001437|pid:none) Clostridium acetobutylicum ATCC... 37 1.9
AJ292044_2(AJ292044|pid:none) Erwinia chrysanthemi mcp gene (par... 37 1.9
AY523976_2(AY523976|pid:none) Azospirillum brasilense plasmid 90... 37 2.5
AB029593_1(AB029593|pid:none) Feline calicivirus gene for capsid... 37 2.5
CP000150_992(CP000150|pid:none) Burkholderia sp. 383 chromosome ... 37 2.5
CP000961_4420(CP000961|pid:none) Shewanella woodyi ATCC 51908, c... 37 2.5
CP000099_2487(CP000099|pid:none) Methanosarcina barkeri str. Fus... 37 2.5
CP000685_2672(CP000685|pid:none) Flavobacterium johnsoniae UW101... 37 2.5
AE010299_1015(AE010299|pid:none) Methanosarcina acetivorans str.... 30 3.3
CP000851_509(CP000851|pid:none) Shewanella pealeana ATCC 700345,... 37 3.3
AI2256(AI2256) hypothetical protein alr3608 [imported] - Nostoc ... 37 3.3
(P39712) RecName: Full=Flocculation protein FLO9; Short... 37 3.3
CP000746_1141(CP000746|pid:none) Actinobacillus succinogenes 130... 37 3.3
CP000099_3251(CP000099|pid:none) Methanosarcina barkeri str. Fus... 37 3.3
AB003521_1(AB003521|pid:none) Saccharomyces cerevisiae gene for ... 36 4.3
DQ020251_1(DQ020251|pid:none) Fusobacterium nucleatum strain ATC... 36 4.3
AY534123_7(AY534123|pid:none) Aegilops tauschii transposons Casp... 36 4.3
CP000606_3394(CP000606|pid:none) Shewanella loihica PV-4, comple... 36 4.3
AC120991_2(AC120991|pid:none) Oryza sativa (japonica cultivar-gr... 36 5.6
CP000271_1280(CP000271|pid:none) Burkholderia xenovorans LB400 c... 36 5.6
AB491192_1(AB491192|pid:none) Athelia rolfsii EndoPG 2 mRNA for ... 36 5.6
AE017261_102(AE017261|pid:none) Picrophilus torridus DSM 9790, c... 36 5.6
AF348967_1(AF348967|pid:none) Chondrostereum purpureum endopolyg... 36 5.6
AB029594_1(AB029594|pid:none) Feline calicivirus gene for capsid... 36 5.6
AE010299_335(AE010299|pid:none) Methanosarcina acetivorans str. ... 36 5.6
CP000099_2131(CP000099|pid:none) Methanosarcina barkeri str. Fus... 29 6.8
CP000804_3634(CP000804|pid:none) Roseiflexus castenholzii DSM 13... 35 7.3
AE017344_389(AE017344|pid:none) Cryptococcus neoformans var. neo... 35 7.3
EF182714_1(EF182714|pid:none) Saccharomyces cerevisiae flocculin... 35 7.3
(P32768) RecName: Full=Flocculation protein FLO1; Short... 35 7.3
AE009951_384(AE009951|pid:none) Fusobacterium nucleatum subsp. n... 35 7.3
CP000254_916(CP000254|pid:none) Methanospirillum hungatei JF-1, ... 35 7.3
AY305378_243(AY305378|pid:none) Ralstonia eutropha H16 megaplasm... 35 7.3
CP000912_261(CP000912|pid:none) Brucella suis ATCC 23445 chromos... 35 7.3
BC142384_1(BC142384|pid:none) Bos taurus cDNA clone MGC:159455 I... 35 7.3
X78160_1(X78160|pid:none) S.cerevisiae flocculation gene FLO1. 35 7.3
CP000678_461(CP000678|pid:none) Methanobrevibacter smithii ATCC ... 35 7.3
CP000873_258(CP000873|pid:none) Brucella canis ATCC 23365 chromo... 35 7.3
AF486286_1(AF486286|pid:none) Feline calicivirus capsid protein ... 35 7.3
CP000609_593(CP000609|pid:none) Methanococcus maripaludis C5, co... 35 9.6
CP000828_3207(CP000828|pid:none) Acaryochloris marina MBIC11017,... 35 9.6
CP000792_1837(CP000792|pid:none) Campylobacter concisus 13826, c... 35 9.6
AE010299_2389(AE010299|pid:none) Methanosarcina acetivorans str.... 35 9.6
AM114193_1124(AM114193|pid:none) Uncultured methanogenic archaeo... 35 9.6
T25075(T25075) hypothetical protein T21C9.11 - Caenorhabditis el... 35 9.6
AE010299_4251(AE010299|pid:none) Methanosarcina acetivorans str.... 35 9.6
AY823627_1(AY823627|pid:none) Haemophilus influenzae Hsf gene, c... 35 9.6
AE001437_3618(AE001437|pid:none) Clostridium acetobutylicum ATCC... 35 9.6
AY078089_1(AY078089|pid:none) Haemophilus influenzae Adhesin (hi... 35 9.6
AM747721_1343(AM747721|pid:none) Burkholderia cenocepacia J2315 ... 35 9.6
>AE008384_66(AE008384|pid:none) Methanosarcina mazei strain Goe1,
complete genome.
Length = 1052
Score = 50.4 bits (119), Expect(2) = 4e-08
Identities = 65/265 (24%), Positives = 97/265 (36%), Gaps = 46/265 (17%)
Frame = +1
Query: 1081 YPEGFLPSTNVQVINNTIRGD--WDYSLTTEGGNQCTVSNNDIQGSCICGIIERGTGIKV 1254
Y + S N V+NNT + Y T N TVS N S GI+ +
Sbjct: 307 YGIAMIYSNNNNVVNNTASDNNRGIYLAYTSSAN--TVSGNKAHSSLNGGIVLQNCS--- 361
Query: 1255 SNNTIHIIGREKEGQTEPTGIQFYGVDNGEISNNSIMGSAKYAILIKPSHESGGASNSVV 1434
+NN I G + GI G N +SNN I + I I S + +
Sbjct: 362 NNNIISNEATLNTGGSTTNGIILGGASNNNVSNN-IASENRRGIYITSGSSGNKVSGNTL 420
Query: 1435 ENNTIDGEFYNC-------------------IFMSNANQAKIHGNVVMGKS--------- 1530
+NT G + I++ N+N + N+ G S
Sbjct: 421 NSNTGHGIYLENAGTDNNLSSNVASSNGVYGIYLVNSNNTALFNNIATGNSKGIYVMTSN 480
Query: 1531 --------------DVDSCVGLQVWYSNGLDIQGNN-IDLPSGTACICSGAKNVNVLSNT 1665
DVD+ G+ + S+ + GN + P G + + + N N+ SN
Sbjct: 481 GNTISENEVYNNNVDVDNSNGIMISLSSNNKVSGNKAYNNPYGIS--LNSSTNNNISSNR 538
Query: 1666 M-MTSRAGFYICQGSDDICIENNDL 1737
+ + SRAG Y+C+ S I NN L
Sbjct: 539 VYLNSRAGVYLCRQSTRNLIFNNYL 563
Score = 32.3 bits (72), Expect(2) = 4e-08
Identities = 36/175 (20%), Positives = 69/175 (39%), Gaps = 17/175 (9%)
Frame = +2
Query: 611 VQVINNTIRGDWDYSLTTEGGNQCTVSNNDIQGSCICGIIERGTGIKVSNNTIHIIGREK 790
+Q +N T G+ + N C V NN + + GI +G+ + N I +
Sbjct: 105 IQGLNITGAGNDKAGIYVYKSNNCKVENNILHNDAL-GIYLKGSDFTLVRNNI---ATKN 160
Query: 791 EGQTEPTGIQFYGVDNGEISNNSIMGSAKYAILIKPSHESGGASNSV------------- 931
I + ++ +NS++ +Y I + S + N+V
Sbjct: 161 NNPGTGRAINIEQSNYTDVLSNSVLNQ-RYGIYVSDSRANRVLENTVNLSRDNGIHVQYA 219
Query: 932 ----VENNTIDGEFYNCIFMSNANQAKIHGNVVMGKSDVDSCVGLQVWYSNGLDI 1084
VENN ++ I +SN+N+ + N V ++ ++V+ S+G +I
Sbjct: 220 TNITVENNRLNSNGMYGIILSNSNENFLRSNNVFNSTN----NSIEVYTSSGNEI 270
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 3,155,819,735
Number of extensions: 67657502
Number of successful extensions: 159360
Number of sequences better than 10.0: 120
Number of HSP's gapped: 159056
Number of HSP's successfully gapped: 224
Length of query: 630
Length of database: 1,051,180,864
Length adjustment: 135
Effective length of query: 495
Effective length of database: 614,245,399
Effective search space: 304051472505
Effective search space used: 304051472505
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
1 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
1 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
1 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
3 |
| CF (FL, S) |
1 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |