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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15592-1
Contig ID Contig-U15592-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15592-1 (Contig-U15592-1Q) /CSM_Contig/Contig-U15592-1Q.Seq.d
AAAAATCATTTCATTTTGTGCTTCATAACCTTGTAAAATTTTTTCTTTAT
GTGATAATGATGGATTTGAAATGATTTCACCAGCATGATAAGTTGAAGCC
CAAAGTATAGGTGATTCTTGTCTACTAATGAATTTTCTTAGTAATTGTCT
AATGTTATCAGTAGAGATAACAGCAGTGAAACCGATTCTTGAGGCTAATA
AAGCAGTGAGTGTTGATTTACCACAACCAGATGTACCACCCAATAAAATG
GTAAAAGAATGTTTTTTATCTTGAACTTCACATGATACAGGGAAATCAAT
TATATATTGTGGCTTTGAATATTGATAACATGATAGTATGTGACCAATGA
TATAATAGAAAATATTTCTTTGAATTGATACACAATAAATTGGTGGTTGT
GTTGTTGTTGTTGCAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGT
AGTAGTAGTAGTAGTAGTAGTACGGTAATAGTAAATTGTAATTCCAATCG
TTGCTTTCTGTTCCCGAACGTTGGCTATCGATTATCTCTCCACTGGTNAA
GGTATATTCAGAAAAATTCCAGATTTTTCTCTATTCAAACCCTCACACCA
CAAGGTATTACTAGTTTGGCTTTTGTCCATCAACTACCCTTTCTGCATCA
CCAGGTGTTGTTAATAAAATATTTTCATCAAATAATGATAATAATATAAA
TTGCAAATTTTAAAAAGATAGCATTAGTATTTTCACATATTTTACAATAT
ATGGGAGAAAGAAAGAAAGAAAGAAAGAAACCACATTTAAATCATCCAGA
GTTACGTGATGAGATCTATTATCAAATCATTAAACAATTGACAGGTCATC
CAGGTAAAAGAGAGAGAATAAAGCTAGGTTGGGAATTGTTATCACTTTGC
ACCTGATATAAAGATTTTCAAAGTATGTTTCAACTATTTACACTCTTTTA
AACAAAGTAGAGGTGGTGAAGTATTATCTCTATGCAATCACTCAATTGGG
TTCACGTTCATTAACACACCTGTGTAGATATGAGATCGAAGCATTTGGCA
AAAAGTACCATTAAAAGTTCAATTCCTTTTCCCTGACGACGTGGCAGAGC
GGTGTTGATATCGATAGTGCCACAACTAGTGGTGAAATTACCAATAGACT
AACCAAATTGGCAGGTTTAAAATCGGATCAAATAATGATAATAATATAAA
TTGCAAATTTTAAAAAGATAGCATTAGTATTTTCACATATTTTACAATAT
ATGGGAGAAAGAAAGAAAGAAAGAAAGAAACCACATTTAAATCATCCAGA
GTTACGTGATGAGATCTATTATCAAATCATTAAACAATTGACAGGTCATC
CAGGTAAAAGAGAGAGAATAAAGCTAGGTTGGGAATTGTTATCACTTTGC
ACCTGATATAAAGATTTTCAAAGTATGTTTCAACTATTTACACTCTTTTA
AACAAAGTAGAGGTGGTGAAGTATTATCTCTATGCAATCACTCAATTGGG
TTCACGTTCATTAACACACCTGTGTAGATATGAGATCGAAGCATTTGGCA
AAAAGTACCATTAAAAGTTCAATTCCTTTTCCCTGACGACGTGGCAGAGC
GGTGTTGATATCGATAGTGCCACAACTAGTGGTGAAATTACCAATAGACT
AACCAAATTGGCAGGTTTAAAATCGGAT----------TTGNCAGGTTTA
AAATCGGGATGCTTTTGTTTTTGTCAGTTTTTGAAGTTTTAAAGAATAAA
GAGAGATCCATATCCAATAGTGAATTCATTTTAGATATCTAGTTAGTAAA
TGGGAGAATTCATTACTTTAATTTGAATCATTATAATCTTCATGTGTAAC
AACAACAGAACGAATTCTATTGGAACCTTTTCAATTCTATTTCAAGATTC
AATTATTCTTAAAACCAGAGAGACCGCCTCGTGAGTTTCAAGTTGGTTTC
TATTTCCATCAATTATTAAGATCCGTTTCAAAAGATCATTTACCAATTAG
TCGTAAAATTATCAGCTCTACGTCTTCAATTCAATATACAGCAACAGTAG
CATCAACAACAAGTTTATCAAGTTTAAATTCTGTTGATGGAAATAGTATT
GATTGTGGTATAAGAAGAGAAAATAGTAGTTTAGGTGGTAGAGACAGGTC
ATATTTTAGGAAATTTTCAAATTCAATGACATTGTATTAGTCGTTAGTGT
TAATGCAGCATCAGTGATTGGTAAAAATCAAGATTTTCACTCTTTTAATA
ATACATCAACAATACAATAAACTCAAACATCACAACAACAAACAAACATA
TCCAACAACATAATCACGTTCACAACTACGATTAACCAAATCACTTCAGA
CCTTTTTTTCAATTTTAAAGATAAAA
Gap gap included
Contig length 2366
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 10
Number of EST 13
Link to clone list U15592
List of clone(s) 

est1=SFI139Z,1,419
est2=SFH539Z,73,455
est3=VHC242F,211,507
est4=AFG127F,279,543
est5=FC-AI01E,287,593
est6=SFL494F,287,867
est7=CHE538F,360,1026
est8=CHJ409F,398,1023
est9=VHB626F,424,535
est10=AFG127H,679,1678
est11=CHF465Z,934,1049
est12=AFG127Z,1679,2366
est13=SFL494Z,1702,2359
Translated Amino Acid sequence 
ksfhfvlhnlvkfflyvimmdlk*fhqhdklkpkv*vilvy**iflviv*cyq*r*qq*n
rflrlikq*vliyhnqmyhpikw*knvfylelhmiqgnqlyivalnidnmivcdq*ynrk
yffelihnklvvvllllq******************ygnskl*fqsllsvperwlsiisp
lvkvysekfqiflysnphttryy*fgfcpsttlsaspgvvnkifssnndnninckf*kds
isiftyftiygrkkerkkettfkssrvt**dllsnh*tidrssr*krenkarlgivitlh
li*rfskyvstiytllnkvevvkyylyaitqlgsrslthlcryeieafgkkyh*KFNSFS
LTTWQSGVDIDSATTSGEITNRLTKLAGLKSDqimiii*ianfkkialvfshilqymger
kkerkkphlnhpelrdeiyyqiikqltghpgkreriklgwellslct*ykdfqsmfqlft
lf*tk*rw*siismqslnwvhvh*htcvdmrskhlakstikssipfp*rrgravlisivp
qlvvklpid*pnwqv*nr---

---XRFKIGMLLFLSVFEVLKNKERSISNSEFILDI*lvngrihyfnlnhynlhv*qqqn
efywnlfnsisrfnys*nqrdrlvsfklvsisiny*dpfqkiiyqlvvklsalrlqfniq
qq*hqqqvyqv*illmeivlivv*eekivv*vvetghilgnfqiq*hcisr*c*csisdw
*ksrfslf**yinntinsnitttnkhiqqhnhvhnyd*pnhfrpffqf*r*
Translated Amino Acid sequence (All Frames) 
Frame A:
knhfilcfitl*nfffm***wi*ndftsmis*spkyr*flstnefs**lsnvisrdnsse
tds*g**ssec*ftttrcttq*ngkrmffilnft*yreinyilwl*ilit**yvtndiie
nisln*ytinwwlcccccssssssssssssssssssstvivncnsnrcflfpnvgyrlsl
hwxryiqknsrffsiqtltpqgitslafvhqlpflhhqvllikyfhqimiii*ianfkki
alvfshilqymgerkkerkkphlnhpelrdeiyyqiikqltghpgkreriklgwellslc
t*ykdfqsmfqlftlf*tk*rw*siismqslnwvhvh*htcvdmrskhlakstikssipf
p*rrgravlisivpqlvvklpid*pnwqv*nrik****yklqilkr*h*yfhifyniwek
erkkernhi*iiqsyvmrsiikslnn*qviqvkere*s*vgncyhfapdikifkvcfnyl
hsfkqsrggevlslcnhsigftfintpv*i*drsiwqkvplkvqflfpddvaerc*yr*c
hn*w*nyq*tnqigrfkig---

---lxglksgcfcfcqflkf*rikrdpypivnsf*iss**mgefitli*iiiifmcnnnr
tnsigtfsilfqdsiilktretas*vsswflfpsiikirfkrsftn*s*nyqlyvfnsiy
snssinnkfikfkfc*wk*y*lwykkrk**frw*rqvif*eifkfndivlvvsvnaasvi
gknqdfhsfnntstiq*tqtsqqqtnisnniitftttinqitsdlffnfkdk

Frame B:
kiisfcas*pckifslcdndgfemispa**veaqsigdscllmnflsnclmlsveitavk
pileankavsvdlpqpdvppnkmvkecfls*tshdtgksiiycgfey**hdsm*pmi**k
ifl*idtq*iggcvvvvavvvvvvvvvvvvvvvvvvvr***ivipivafcsrtlaidyls
tgxgifrkipdfslfkpshhkvllvwllsinypfcitrcc**nifik****yklqilkr*
h*yfhifyniwekerkkernhi*iiqsyvmrsiikslnn*qviqvkere*s*vgncyhfa
pdikifkvcfnylhsfkqsrggevlslcnhsigftfintpv*i*drsiwqkvplkvqflf
pddvaerc*yr*chn*w*nyq*tnqigrfkigsnndnninckf*kdsisiftyftiygrk
kerkkettfkssrvt**dllsnh*tidrssr*krenkarlgivitlhli*rfskyvstiy
tllnkvevvkyylyaitqlgsrslthlcryeieafgkkyh*KFNSFSLTTWQSGVDIDSA
TTSGEITNRLTKLAGLKSD---

---xqv*nrdafvfvsf*sfke*reihiq**ihfrylvskwensll*fesl*sscvttte
rillepfqfyfkiqlflkperpprefqvgfyfhqllrsvskdhlpisrkiisstssiqyt
atvasttslsslnsvdgnsidcgirrensslggrdrsyfrkfsnsmtly*slvlmqhq*l
vkikiftlliihqqynklkhhnnkqtyptt*srsqlrltkslqtffsilkik

Frame C:
ksfhfvlhnlvkfflyvimmdlk*fhqhdklkpkv*vilvy**iflviv*cyq*r*qq*n
rflrlikq*vliyhnqmyhpikw*knvfylelhmiqgnqlyivalnidnmivcdq*ynrk
yffelihnklvvvllllq******************ygnskl*fqsllsvperwlsiisp
lvkvysekfqiflysnphttryy*fgfcpsttlsaspgvvnkifssnndnninckf*kds
isiftyftiygrkkerkkettfkssrvt**dllsnh*tidrssr*krenkarlgivitlh
li*rfskyvstiytllnkvevvkyylyaitqlgsrslthlcryeieafgkkyh*KFNSFS
LTTWQSGVDIDSATTSGEITNRLTKLAGLKSDqimiii*ianfkkialvfshilqymger
kkerkkphlnhpelrdeiyyqiikqltghpgkreriklgwellslct*ykdfqsmfqlft
lf*tk*rw*siismqslnwvhvh*htcvdmrskhlakstikssipfp*rrgravlisivp
qlvvklpid*pnwqv*nr---

---XRFKIGMLLFLSVFEVLKNKERSISNSEFILDI*lvngrihyfnlnhynlhv*qqqn
efywnlfnsisrfnys*nqrdrlvsfklvsisiny*dpfqkiiyqlvvklsalrlqfniq
qq*hqqqvyqv*illmeivlivv*eekivv*vvetghilgnfqiq*hcisr*c*csisdw
*ksrfslf**yinntinsnitttnkhiqqhnhvhnyd*pnhfrpffqf*r*
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15592-1 (Contig-U15592-1Q)
/CSM_Contig/Contig-U15592-1Q.Seq.d
         (2376 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15592-1 (Contig-U15592-1Q) /CSM_Contig/Conti...  1037  0.0
Contig-U15988-1 (Contig-U15988-1Q) /CSM_Contig/Conti...    58  7e-08
Contig-U08124-1 (Contig-U08124-1Q) /CSM_Contig/Conti...    46  3e-04
Contig-U15758-1 (Contig-U15758-1Q) /CSM_Contig/Conti...    42  0.004
Contig-U09342-1 (Contig-U09342-1Q) /CSM_Contig/Conti...    42  0.004
Contig-U14739-1 (Contig-U14739-1Q) /CSM_Contig/Conti...    40  0.015
Contig-U13551-1 (Contig-U13551-1Q) /CSM_Contig/Conti...    40  0.015
Contig-U13453-1 (Contig-U13453-1Q) /CSM_Contig/Conti...    40  0.015
Contig-U04524-1 (Contig-U04524-1Q) /CSM_Contig/Conti...    40  0.015
Contig-U01680-1 (Contig-U01680-1Q) /CSM_Contig/Conti...    40  0.015

>Contig-U15592-1 (Contig-U15592-1Q) /CSM_Contig/Contig-U15592-1Q.Seq.d
          Length = 2376

 Score = 1037 bits (523), Expect = 0.0
 Identities = 523/523 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1741 aaagaataaagagagatccatatccaatagtgaattcattttagatatctagttagtaaa 1800
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1741 aaagaataaagagagatccatatccaatagtgaattcattttagatatctagttagtaaa 1800

                                                                        
Query: 1801 tgggagaattcattactttaatttgaatcattataatcttcatgtgtaacaacaacagaa 1860
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1801 tgggagaattcattactttaatttgaatcattataatcttcatgtgtaacaacaacagaa 1860

                                                                        
Query: 1861 cgaattctattggaaccttttcaattctatttcaagattcaattattcttaaaaccagag 1920
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1861 cgaattctattggaaccttttcaattctatttcaagattcaattattcttaaaaccagag 1920

                                                                        
Query: 1921 agaccgcctcgtgagtttcaagttggtttctatttccatcaattattaagatccgtttca 1980
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1921 agaccgcctcgtgagtttcaagttggtttctatttccatcaattattaagatccgtttca 1980

                                                                        
Query: 1981 aaagatcatttaccaattagtcgtaaaattatcagctctacgtcttcaattcaatataca 2040
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1981 aaagatcatttaccaattagtcgtaaaattatcagctctacgtcttcaattcaatataca 2040

                                                                        
Query: 2041 gcaacagtagcatcaacaacaagtttatcaagtttaaattctgttgatggaaatagtatt 2100
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2041 gcaacagtagcatcaacaacaagtttatcaagtttaaattctgttgatggaaatagtatt 2100

                                                                        
Query: 2101 gattgtggtataagaagagaaaatagtagtttaggtggtagagacaggtcatattttagg 2160
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2101 gattgtggtataagaagagaaaatagtagtttaggtggtagagacaggtcatattttagg 2160

                                                                        
Query: 2161 aaattttcaaattcaatgacattgtattagtcgttagtgttaatgcagcatcagtgattg 2220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2161 aaattttcaaattcaatgacattgtattagtcgttagtgttaatgcagcatcagtgattg 2220

                                                       
Query: 2221 gtaaaaatcaagattttcactcttttaataatacatcaacaat 2263
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2221 gtaaaaatcaagattttcactcttttaataatacatcaacaat 2263


 Score =  942 bits (475), Expect = 0.0
 Identities = 475/475 (100%)
 Strand = Plus / Plus

                                                                        
Query: 781  ccacatttaaatcatccagagttacgtgatgagatctattatcaaatcattaaacaattg 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  ccacatttaaatcatccagagttacgtgatgagatctattatcaaatcattaaacaattg 840

                                                                        
Query: 841  acaggtcatccaggtaaaagagagagaataaagctaggttgggaattgttatcactttgc 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  acaggtcatccaggtaaaagagagagaataaagctaggttgggaattgttatcactttgc 900

                                                                        
Query: 901  acctgatataaagattttcaaagtatgtttcaactatttacactcttttaaacaaagtag 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  acctgatataaagattttcaaagtatgtttcaactatttacactcttttaaacaaagtag 960

                                                                        
Query: 961  aggtggtgaagtattatctctatgcaatcactcaattgggttcacgttcattaacacacc 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  aggtggtgaagtattatctctatgcaatcactcaattgggttcacgttcattaacacacc 1020

                                                                        
Query: 1021 tgtgtagatatgagatcgaagcatttggcaaaaagtaccattaaaagttcaattcctttt 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 tgtgtagatatgagatcgaagcatttggcaaaaagtaccattaaaagttcaattcctttt 1080

                                                                        
Query: 1081 ccctgacgacgtggcagagcggtgttgatatcgatagtgccacaactagtggtgaaatta 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 ccctgacgacgtggcagagcggtgttgatatcgatagtgccacaactagtggtgaaatta 1140

                                                                        
Query: 1141 ccaatagactaaccaaattggcaggtttaaaatcggatcaaataatgataataatataaa 1200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 ccaatagactaaccaaattggcaggtttaaaatcggatcaaataatgataataatataaa 1200

                                                                   
Query: 1201 ttgcaaattttaaaaagatagcattagtattttcacatattttacaatatatggg 1255
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 ttgcaaattttaaaaagatagcattagtattttcacatattttacaatatatggg 1255


 Score =  821 bits (414), Expect = 0.0
 Identities = 414/414 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaatcatttcattttgtgcttcataaccttgtaaaattttttctttatgtgataatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaaaatcatttcattttgtgcttcataaccttgtaaaattttttctttatgtgataatga 60

                                                                       
Query: 61  tggatttgaaatgatttcaccagcatgataagttgaagcccaaagtataggtgattcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tggatttgaaatgatttcaccagcatgataagttgaagcccaaagtataggtgattcttg 120

                                                                       
Query: 121 tctactaatgaattttcttagtaattgtctaatgttatcagtagagataacagcagtgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tctactaatgaattttcttagtaattgtctaatgttatcagtagagataacagcagtgaa 180

                                                                       
Query: 181 accgattcttgaggctaataaagcagtgagtgttgatttaccacaaccagatgtaccacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 accgattcttgaggctaataaagcagtgagtgttgatttaccacaaccagatgtaccacc 240

                                                                       
Query: 241 caataaaatggtaaaagaatgttttttatcttgaacttcacatgatacagggaaatcaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caataaaatggtaaaagaatgttttttatcttgaacttcacatgatacagggaaatcaat 300

                                                                       
Query: 301 tatatattgtggctttgaatattgataacatgatagtatgtgaccaatgatataatagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tatatattgtggctttgaatattgataacatgatagtatgtgaccaatgatataatagaa 360

                                                                 
Query: 361 aatatttctttgaattgatacacaataaattggtggttgtgttgttgttgttgc 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aatatttctttgaattgatacacaataaattggtggttgtgttgttgttgttgc 414


 Score =  791 bits (399), Expect = 0.0
 Identities = 432/432 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1281 ccacatttaaatcatccagagttacgtgatgagatctattatcaaatcattaaacaattg 1340
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1281 ccacatttaaatcatccagagttacgtgatgagatctattatcaaatcattaaacaattg 1340

                                                                        
Query: 1341 acaggtcatccaggtaaaagagagagaataaagctaggttgggaattgttatcactttgc 1400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1341 acaggtcatccaggtaaaagagagagaataaagctaggttgggaattgttatcactttgc 1400

                                                                        
Query: 1401 acctgatataaagattttcaaagtatgtttcaactatttacactcttttaaacaaagtag 1460
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1401 acctgatataaagattttcaaagtatgtttcaactatttacactcttttaaacaaagtag 1460

                                                                        
Query: 1461 aggtggtgaagtattatctctatgcaatcactcaattgggttcacgttcattaacacacc 1520
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1461 aggtggtgaagtattatctctatgcaatcactcaattgggttcacgttcattaacacacc 1520

                                                                        
Query: 1521 tgtgtagatatgagatcgaagcatttggcaaaaagtaccattaaaagttcaattcctttt 1580
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1521 tgtgtagatatgagatcgaagcatttggcaaaaagtaccattaaaagttcaattcctttt 1580

                                                                        
Query: 1581 ccctgacgacgtggcagagcggtgttgatatcgatagtgccacaactagtggtgaaatta 1640
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1581 ccctgacgacgtggcagagcggtgttgatatcgatagtgccacaactagtggtgaaatta 1640

                                                                        
Query: 1641 ccaatagactaaccaaattggcaggtttaaaatcggatnnnnnnnnnnttgncaggttta 1700
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1641 ccaatagactaaccaaattggcaggtttaaaatcggatnnnnnnnnnnttgncaggttta 1700

                        
Query: 1701 aaatcgggatgc 1712
            ||||||||||||
Sbjct: 1701 aaatcgggatgc 1712


 Score =  789 bits (398), Expect = 0.0
 Identities = 398/398 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1281 ccacatttaaatcatccagagttacgtgatgagatctattatcaaatcattaaacaattg 1340
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  ccacatttaaatcatccagagttacgtgatgagatctattatcaaatcattaaacaattg 840

                                                                        
Query: 1341 acaggtcatccaggtaaaagagagagaataaagctaggttgggaattgttatcactttgc 1400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  acaggtcatccaggtaaaagagagagaataaagctaggttgggaattgttatcactttgc 900

                                                                        
Query: 1401 acctgatataaagattttcaaagtatgtttcaactatttacactcttttaaacaaagtag 1460
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  acctgatataaagattttcaaagtatgtttcaactatttacactcttttaaacaaagtag 960

                                                                        
Query: 1461 aggtggtgaagtattatctctatgcaatcactcaattgggttcacgttcattaacacacc 1520
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  aggtggtgaagtattatctctatgcaatcactcaattgggttcacgttcattaacacacc 1020

                                                                        
Query: 1521 tgtgtagatatgagatcgaagcatttggcaaaaagtaccattaaaagttcaattcctttt 1580
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 tgtgtagatatgagatcgaagcatttggcaaaaagtaccattaaaagttcaattcctttt 1080

                                                                        
Query: 1581 ccctgacgacgtggcagagcggtgttgatatcgatagtgccacaactagtggtgaaatta 1640
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 ccctgacgacgtggcagagcggtgttgatatcgatagtgccacaactagtggtgaaatta 1140

                                                  
Query: 1641 ccaatagactaaccaaattggcaggtttaaaatcggat 1678
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 ccaatagactaaccaaattggcaggtttaaaatcggat 1178


 Score =  789 bits (398), Expect = 0.0
 Identities = 398/398 (100%)
 Strand = Plus / Plus

                                                                        
Query: 781  ccacatttaaatcatccagagttacgtgatgagatctattatcaaatcattaaacaattg 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1281 ccacatttaaatcatccagagttacgtgatgagatctattatcaaatcattaaacaattg 1340

                                                                        
Query: 841  acaggtcatccaggtaaaagagagagaataaagctaggttgggaattgttatcactttgc 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1341 acaggtcatccaggtaaaagagagagaataaagctaggttgggaattgttatcactttgc 1400

                                                                        
Query: 901  acctgatataaagattttcaaagtatgtttcaactatttacactcttttaaacaaagtag 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1401 acctgatataaagattttcaaagtatgtttcaactatttacactcttttaaacaaagtag 1460

                                                                        
Query: 961  aggtggtgaagtattatctctatgcaatcactcaattgggttcacgttcattaacacacc 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1461 aggtggtgaagtattatctctatgcaatcactcaattgggttcacgttcattaacacacc 1520

                                                                        
Query: 1021 tgtgtagatatgagatcgaagcatttggcaaaaagtaccattaaaagttcaattcctttt 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1521 tgtgtagatatgagatcgaagcatttggcaaaaagtaccattaaaagttcaattcctttt 1580

                                                                        
Query: 1081 ccctgacgacgtggcagagcggtgttgatatcgatagtgccacaactagtggtgaaatta 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1581 ccctgacgacgtggcagagcggtgttgatatcgatagtgccacaactagtggtgaaatta 1640

                                                  
Query: 1141 ccaatagactaaccaaattggcaggtttaaaatcggat 1178
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 1641 ccaatagactaaccaaattggcaggtttaaaatcggat 1678


 Score =  555 bits (280), Expect = e-157
 Identities = 283/283 (100%)
 Strand = Plus / Plus

                                                                       
Query: 473 cggtaatagtaaattgtaattccaatcgttgctttctgttcccgaacgttggctatcgat 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cggtaatagtaaattgtaattccaatcgttgctttctgttcccgaacgttggctatcgat 532

                                                                       
Query: 533 tatctctccactggtnaaggtatattcagaaaaattccagatttttctctattcaaaccc 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tatctctccactggtnaaggtatattcagaaaaattccagatttttctctattcaaaccc 592

                                                                       
Query: 593 tcacaccacaaggtattactagtttggcttttgtccatcaactaccctttctgcatcacc 652
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tcacaccacaaggtattactagtttggcttttgtccatcaactaccctttctgcatcacc 652

                                                                       
Query: 653 aggtgttgttaataaaatattttcatcaaataatgataataatataaattgcaaatttta 712
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aggtgttgttaataaaatattttcatcaaataatgataataatataaattgcaaatttta 712

                                                      
Query: 713 aaaagatagcattagtattttcacatattttacaatatatggg 755
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 aaaagatagcattagtattttcacatattttacaatatatggg 755


 Score =  157 bits (79), Expect = 1e-37
 Identities = 79/79 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1177 atcaaataatgataataatataaattgcaaattttaaaaagatagcattagtattttcac 1236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677  atcaaataatgataataatataaattgcaaattttaaaaagatagcattagtattttcac 736

                               
Query: 1237 atattttacaatatatggg 1255
            |||||||||||||||||||
Sbjct: 737  atattttacaatatatggg 755


 Score =  157 bits (79), Expect = 1e-37
 Identities = 79/79 (100%)
 Strand = Plus / Plus

                                                                        
Query: 677  atcaaataatgataataatataaattgcaaattttaaaaagatagcattagtattttcac 736
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1177 atcaaataatgataataatataaattgcaaattttaaaaagatagcattagtattttcac 1236

                               
Query: 737  atattttacaatatatggg 755
            |||||||||||||||||||
Sbjct: 1237 atattttacaatatatggg 1255


 Score = 89.7 bits (45), Expect = 2e-17
 Identities = 59/66 (89%)
 Strand = Plus / Plus

                                                                        
Query: 2311 taatcacgttcacaactacgattaaccaaatcacttcagaccnnnnnnncaattttaaag 2370
            ||||||||||||||||||||||||||||||||||||||||||       |||||||||||
Sbjct: 2311 taatcacgttcacaactacgattaaccaaatcacttcagacctttttttcaattttaaag 2370

                  
Query: 2371 ataaaa 2376
            ||||||
Sbjct: 2371 ataaaa 2376


 Score = 32.2 bits (16), Expect = 3.8
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                               
Query: 1689 ttgncaggtttaaaatcgg 1707
            ||| |||||||||||||||
Sbjct: 1158 ttggcaggtttaaaatcgg 1176


>Contig-U15988-1 (Contig-U15988-1Q) /CSM_Contig/Contig-U15988-1Q.Seq.d
          Length = 428

 Score = 58.0 bits (29), Expect = 7e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                             
Query: 2049 agcatcaacaacaagtttatcaagtttaaattc 2081
            |||| ||||||||||||||||||||||||||||
Sbjct: 74   agcaacaacaacaagtttatcaagtttaaattc 106


>Contig-U08124-1 (Contig-U08124-1Q) /CSM_Contig/Contig-U08124-1Q.Seq.d
          Length = 1289

 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 589 accctcacaccacaaggtattactagtttggcttt 623
           ||||||||||||||| |||||| |||| |||||||
Sbjct: 682 accctcacaccacaatgtattattagtatggcttt 716


 Score = 38.2 bits (19), Expect = 0.061
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 588 aaccctcacaccacaaggt 606
           |||||||||||||||||||
Sbjct: 737 aaccctcacaccacaaggt 755


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 54,778
Number of Sequences: 8402
Number of extensions: 54778
Number of successful extensions: 12151
Number of sequences better than 10.0: 316
length of query: 2376
length of database: 8,075,542
effective HSP length: 17
effective length of query: 2359
effective length of database: 7,932,708
effective search space: 18713258172
effective search space used: 18713258172
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 2. 1
Homology vs DNA 
Query= Contig-U15592-1 (Contig-U15592-1Q) /CSM_Contig/Contig-U15592-1Q.Seq.d
         (2376 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ342288) Dictyostelium discoideum cDNA clone:dda13e07, 3' ...  1003   0.0    4
(BJ401634) Dictyostelium discoideum cDNA clone:dds23l24, 3' ...  1003   0.0    2
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...   743   0.0    7
(BJ402587) Dictyostelium discoideum cDNA clone:dds17m09, 3' ...   749   0.0    1
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595...   196   0.0    22
(BJ402341) Dictyostelium discoideum cDNA clone:dds16m09, 3' ...   638   e-178  1
(BJ390841) Dictyostelium discoideum cDNA clone:dds23l24, 5' ...   369   e-169  3
(BJ325211) Dictyostelium discoideum cDNA clone:dda13e07, 5' ...   107   2e-18  1
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    74   3e-08  1
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...    66   5e-06  6
(BJ364345) Dictyostelium discoideum cDNA clone:ddc31k09, 5' ...    64   3e-05  1
(AY159038) Dictyostelium discoideum LvsB (lvsB) gene, comple...    42   3e-04  4
(M27588) Dictyostelium discoideum CsbA (csbA) and CsbB (csbB...    56   0.001  3
(C24389) Dictyostelium discoideum gamete cDNA, clone FC-AT02.      58   0.002  1
(BJ366715) Dictyostelium discoideum cDNA clone:ddc40b04, 5' ...    58   0.002  1
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    52   0.003  9
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    56   0.005  11
(CK753676) eca01-12cs3-d05 Eca01 Eschscholzia californica cD...    56   0.006  1
(FD054641) CBPO3210.g1 CBPO: Normalized channel catfish cDNA...    34   0.12   3
(FD054640) CBPO3210.b1 CBPO: Normalized channel catfish cDNA...    34   0.12   3
(AC140759) Rattus norvegicus clone CH230-48I18, *** SEQUENCI...    50   0.39   1
(AC118402) Rattus norvegicus clone CH230-142D15, WORKING DRA...    50   0.39   1
(AC103297) Rattus norvegicus clone CH230-21N14, WORKING DRAF...    50   0.39   1
(CJ405895) Molgula tectiformis cDNA, gonad clone:mtgd024j21,...    50   0.39   1
(EG965105) AU_Ich_025A_H07 Whole organism normalized cDNA li...    34   0.44   3
(FD070928) CBFH13455.b1 CBFH: Normalized blue catfish cDNA l...    34   0.57   3
(FD070929) CBFH13455.g1 CBFH: Normalized blue catfish cDNA l...    34   0.62   3
(AC180682) Strongylocentrotus purpuratus clone R3-3088A11, W...    34   0.83   2
(AC177112) Strongylocentrotus purpuratus clone R3-4014C3, WO...    34   0.83   2
(EK043884) 1092959539282 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.99   2
(DH330105) Oryzias latipes Fosmid clone:GOLWFno694_k07, reve...    34   1.1    2
(AC220411) Bos taurus clone CH240-359H21, WORKING DRAFT SEQU...    38   1.4    6
(AC173479) Mus musculus BAC clone RP23-428F8 from chromosome...    48   1.5    1
(AC164435) Mus musculus BAC clone RP23-151F4 from chromosome...    48   1.5    1
(L26287) Schistosoma mansoni SMDR2 gene, complete cds.             48   1.5    1
(AC190052) Brassica rapa subsp. pekinensis clone KBrB041F23,...    48   1.5    1
(CU625552) Theobroma cacao, mRNA sequence (KZ0ABE5YI05FM1).        48   1.5    1
(EY324203) CAWX9809.fwd CAWX Helobdella robusta Primary Earl...    48   1.5    1
(EY304554) CAWX17777.fwd CAWX Helobdella robusta Primary Ear...    48   1.5    1
(AC099718) Mus musculus clone RP23-368E4, WORKING DRAFT SEQU...    36   1.7    7
(AC106392) Rattus norvegicus clone CH230-140C8, WORKING DRAF...    36   2.3    8
(AM454646) Vitis vinifera contig VV78X142721.7, whole genome...    40   2.5    2
(EI840803) POTGJ55TR Solanum tuberosum RHPOTKEY BAC ends Sol...    46   2.5    2
(EJ956973) 1093018976560 Global-Ocean-Sampling_GS-30-02-01-1...    36   3.2    2
(AC179177) Strongylocentrotus purpuratus clone R3-1107H1, WO...    40   4.0    5
(AC177739) Strongylocentrotus purpuratus clone R3-1008H3, WO...    46   4.3    6
(AP003530) Homo sapiens genomic DNA, chromosome 11 clone:RP1...    42   5.0    8
(DB399356) Asterina pectinifera cDNA clone:ape2m03, 3' end.        36   5.0    3
(AC115605) Dictyostelium discoideum chromosome 2 map 5817431...    32   5.2    7
(AC109603) Mus musculus strain 129/Sv clone ct7-534h6 map 5,...    44   5.3    3
(AC181112) Strongylocentrotus purpuratus clone R3-3043G09, W...    40   5.6    7
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   5.8    9
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084...    32   6.0    9
(BV014108) S212P6734FF11.T0 CZECHII/Ei Mus musculus STS geno...    46   6.1    1
(CT009760) Mouse DNA sequence from clone RP23-92K14 on chrom...    46   6.1    1
(AC166989) Mus musculus BAC clone RP24-345J5 from chromosome...    46   6.1    1
(AC154775) Mus musculus BAC clone RP23-100F7 from chromosome...    46   6.1    1
(BX842641) Neurospora crassa DNA linkage group I BAC contig ...    46   6.1    1
(AB005241) Arabidopsis thaliana genomic DNA, chromosome 5, P...    46   6.1    1
(AE014296) Drosophila melanogaster chromosome 3L, complete s...    46   6.1    1
(AE001426) Plasmodium falciparum 3D7 chromosome 2 section 63...    46   6.1    1
(AC091127) Drosophila melanogaster 3L BAC RP98-27E18 (Roswel...    46   6.1    1
(AC010711) Drosophila melanogaster 3L BAC RP98-22D12 (Roswel...    46   6.1    1
(AC079948) Homo sapiens 12 BAC RP11-316O1 (Roswell Park Canc...    46   6.1    1
(AC012597) Homo sapiens 12 BAC RP11-47G13 (Roswell Park Canc...    46   6.1    1
(AC136676) Rattus norvegicus clone CH230-141C19, *** SEQUENC...    46   6.1    1
(AC117153) Rattus norvegicus clone CH230-64A17, WORKING DRAF...    46   6.1    1
(CU915574) Brassica rapa subsp. pekinensis clone KBrB090F01,...    46   6.1    1
(AL844506) Plasmodium falciparum chromosome  7.                    46   6.1    1
(AC201040) Strongylocentrotus purpuratus clone R3-12L16, WOR...    46   6.1    1
(AC180096) Strongylocentrotus purpuratus clone R3-4007O21, W...    46   6.1    1
(AC178867) Strongylocentrotus purpuratus clone R3-26P12, WOR...    46   6.1    1
(AC177476) Strongylocentrotus purpuratus clone R3-61G21, WOR...    46   6.1    1
(AC168824) Strongylocentrotus purpuratus clone R3-13E23, WOR...    46   6.1    1
(AC168792) Strongylocentrotus purpuratus clone R3-13J7, WORK...    46   6.1    1
(AC014118) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    46   6.1    1
(AZ681274) ENTMP85TR Entamoeba histolytica Sheared DNA Entam...    46   6.1    1
(FH545354) CHO_OF4362xb19f1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   6.1    1
(FH027771) CHO_OF3152xj17r1.ab1 CHO_OF3 Nicotiana tabacum ge...    46   6.1    1
(ER408041) 1095366044967 Global-Ocean-Sampling_GS-34-01-01-1...    46   6.1    1
(EK504702) 1095506156292 Global-Ocean-Sampling_GS-32-01-01-1...    46   6.1    1
(EK502811) 1095505927581 Global-Ocean-Sampling_GS-32-01-01-1...    46   6.1    1
(AQ105875) HS_3057_A2_C12_MF CIT Approved Human Genomic Sper...    46   6.1    1
(AM602401) Entamoeba invadens IP1 GSS, clone inv017b05.q1k.        46   6.1    1
(EJ692237) 1092956006897 Global-Ocean-Sampling_GS-30-02-01-1...    46   6.1    1
(EJ671858) 1092955062167 Global-Ocean-Sampling_GS-30-02-01-1...    46   6.1    1
(EJ662525) 1092955029635 Global-Ocean-Sampling_GS-30-02-01-1...    46   6.1    1
(EJ662264) 1092955028387 Global-Ocean-Sampling_GS-30-02-01-1...    46   6.1    1
(EJ297877) 1095388058795 Global-Ocean-Sampling_GS-27-01-01-1...    46   6.1    1
(EJ238611) 1095326013181 Global-Ocean-Sampling_GS-27-01-01-1...    46   6.1    1
(ED529274) KBrB119J16F KBrB, Brassica rapa BamHI BAC library...    46   6.1    1
(AL266574) Tetraodon nigroviridis genome survey sequence T7 ...    46   6.1    1
(AL147216) Anopheles gambiae GSS SP6 end of clone 13O06 of N...    46   6.1    1
(CW957706) TcB53.2_D04_SP6 Tribolium BAC library Tribolium c...    46   6.1    1
(CW955952) TcB46.2_C03_SP6 Tribolium BAC library Tribolium c...    46   6.1    1
(CW948603) TcB32.4_H12_T7 Tribolium BAC library Tribolium ca...    46   6.1    1
(EH575430) FDR202-P00050-DEPE-R_K04 FDR202 Danio rerio cDNA ...    46   6.1    1
(EH554317) FDR202-P00050-DEPE-F_K04 FDR202 Danio rerio cDNA ...    46   6.1    1
(EG550082) MM05L13_XP Sugar Beet germination cDNA library Be...    46   6.1    1
(DC616260) Lethenteron japonicum cDNA, clone: Lamprey_liver_...    46   6.1    1
(BY976409) Physcomitrella patens subsp. patens cDNA clone: P...    46   6.1    1
(BQ836536) rf47b06.y1 Meloidogyne hapla J2 pAMP1 v1 Meloidog...    46   6.1    1
(BQ751599) EST632162 DSCT Colletotrichum trifolii cDNA clone...    46   6.1    1
(BJ341750) Dictyostelium discoideum cDNA clone:dda8d04, 3' e...    46   6.1    1
(GH083814) G992P11RP5.T0 Neurospora crassa cDNA - 1 hour Hea...    46   6.1    1
(GH041400) G906P135RD3.T0 Neurospora crassa cDNA - 7 hours V...    46   6.1    1
(AA390237) CpEST.225 pSKIIminusCpIOWAsporoLib2 Cryptosporidi...    46   6.1    1
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    46   6.1    1
(CP000790) Vibrio harveyi ATCC BAA-1116 chromosome II, compl...    46   6.1    1
(AY363171) Xenorhabdus nematophila putative UDP-glucose dehy...    46   6.1    1
(AM999887) Wolbachia endosymbiont of Culex quinquefasciatus ...    46   6.1    1
(AE017196) Wolbachia endosymbiont of Drosophila melanogaster...    46   6.1    1
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    36   7.1    8
(AC146723) Medicago truncatula chromosome 8 clone mth2-34n4,...    38   7.1    8
(DB385557) Asterina pectinifera cDNA clone:ape2m03, 5' end.        36   7.2    3
(CG187053) PUIDW20TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    42   7.3    2
(AC168470) Strongylocentrotus purpuratus clone R3-35B15, WOR...    36   9.3    7
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    36   9.4    5

>(BJ342288) Dictyostelium discoideum cDNA clone:dda13e07, 3' end,
            single read.
          Length = 688

 Score = 1003 bits (506), Expect(4) = 0.0
 Identities = 506/506 (100%)
 Strand = Plus / Minus


Query: 1741 aaagaataaagagagatccatatccaatagtgaattcattttagatatctagttagtaaa 1800
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636  aaagaataaagagagatccatatccaatagtgaattcattttagatatctagttagtaaa 577


Query: 1801 tgggagaattcattactttaatttgaatcattataatcttcatgtgtaacaacaacagaa 1860
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576  tgggagaattcattactttaatttgaatcattataatcttcatgtgtaacaacaacagaa 517


Query: 1861 cgaattctattggaaccttttcaattctatttcaagattcaattattcttaaaaccagag 1920
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516  cgaattctattggaaccttttcaattctatttcaagattcaattattcttaaaaccagag 457


Query: 1921 agaccgcctcgtgagtttcaagttggtttctatttccatcaattattaagatccgtttca 1980
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456  agaccgcctcgtgagtttcaagttggtttctatttccatcaattattaagatccgtttca 397


Query: 1981 aaagatcatttaccaattagtcgtaaaattatcagctctacgtcttcaattcaatataca 2040
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396  aaagatcatttaccaattagtcgtaaaattatcagctctacgtcttcaattcaatataca 337


Query: 2041 gcaacagtagcatcaacaacaagtttatcaagtttaaattctgttgatggaaatagtatt 2100
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336  gcaacagtagcatcaacaacaagtttatcaagtttaaattctgttgatggaaatagtatt 277


Query: 2101 gattgtggtataagaagagaaaatagtagtttaggtggtagagacaggtcatattttagg 2160
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276  gattgtggtataagaagagaaaatagtagtttaggtggtagagacaggtcatattttagg 217


Query: 2161 aaattttcaaattcaatgacattgtattagtcgttagtgttaatgcagcatcagtgattg 2220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216  aaattttcaaattcaatgacattgtattagtcgttagtgttaatgcagcatcagtgattg 157


Query: 2221 gtaaaaatcaagattttcactctttt 2246
            ||||||||||||||||||||||||||
Sbjct: 156  gtaaaaatcaagattttcactctttt 131

 Score = 44.1 bits (22), Expect(4) = 0.0
 Identities = 22/22 (100%)
 Strand = Plus / Minus


Query: 2331 attaaccaaatcacttcagacc 2352
            ||||||||||||||||||||||
Sbjct: 46   attaaccaaatcacttcagacc 25

 Score = 42.1 bits (21), Expect(4) = 0.0
 Identities = 24/24 (100%)
 Strand = Plus / Minus


Query: 1689 ttgncaggtttaaaatcgggatgc 1712
            ||||||||||||||||||||||||
Sbjct: 688  ttgncaggtttaaaatcgggatgc 665

 Score = 34.2 bits (17), Expect(4) = 0.0
 Identities = 17/17 (100%)
 Strand = Plus / Minus


Query: 2360 caattttaaagataaaa 2376
            |||||||||||||||||
Sbjct: 17   caattttaaagataaaa 1

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 2,535,186,652
Number of extensions: 154203250
Number of successful extensions: 13828335
Number of sequences better than 10.0: 118
Length of query: 2376
Length of database: 98,766,808,389
Length adjustment: 25
Effective length of query: 2351
Effective length of database: 96,311,147,814
Effective search space: 226427508510714
Effective search space used: 226427508510714
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
protein update 2009. 7.17
Homology vs Protein 
Query= Contig-U15592-1 (Contig-U15592-1Q) /CSM_Contig/Contig-U15592-1Q.Seq.d
         (2376 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8T1P1) RecName: Full=Uncharacterized protein DDB_G0273453/DDB_...   271   6e-71
AY056298_1(AY056298|pid:none) Arabidopsis thaliana unknown prote...   115   7e-24
AB015472_1(AB015472|pid:none) Arabidopsis thaliana genomic DNA, ...   112   6e-23
EU366951_1(EU366951|pid:none) Oryza sativa Japonica Group mutant...   109   5e-22
BT060460_1(BT060460|pid:none) Zea mays full-length cDNA clone ZM...   108   9e-22
(A6UQ76) RecName: Full=2-phosphoglycerate kinase;          Short...    70   4e-10
AM494946_73(AM494946|pid:none) Leishmania braziliensis chromosom...    69   8e-10
CP000359_1751(CP000359|pid:none) Deinococcus geothermalis DSM 11...    67   2e-09
(Q58877) RecName: Full=2-phosphoglycerate kinase;          Short...    67   2e-09
CP000867_1229(CP000867|pid:none) Methanococcus maripaludis C6, c...    67   3e-09
CT005248_78(CT005248|pid:none) Leishmania major strain Friedlin,...    65   1e-08
AE000513_1487(AE000513|pid:none) Deinococcus radiodurans R1 chro...    63   6e-08
CP000855_747(CP000855|pid:none) Thermococcus onnurineus NA1, com...    61   2e-07
(O27911) RecName: Full=2-phosphoglycerate kinase;          Short...    60   3e-07
(Q9V2C6) RecName: Full=2-phosphoglycerate kinase;          Short...    59   1e-06
(O57882) RecName: Full=2-phosphoglycerate kinase;          Short...    57   2e-06
AL844509_84(AL844509|pid:none) Plasmodium falciparum 3D7 chromos...    57   2e-06
AP008208_2956(AP008208|pid:none) Oryza sativa (japonica cultivar...    54   2e-05
AE009439_33(AE009439|pid:none) Methanopyrus kandleri AV19, compl...    54   3e-05
AE017221_121(AE017221|pid:none) Thermus thermophilus HB27, compl...    53   6e-05
BC051090_1(BC051090|pid:none) Mus musculus myosin XVB, mRNA (cDN...    52   8e-05
AL645647_6(AL645647|pid:none) Mouse DNA sequence from clone RP23...    52   8e-05
AP008226_495(AP008226|pid:none) Thermus thermophilus HB8 genomic...    52   8e-05
AK074183_1(AK074183|pid:none) Homo sapiens mRNA for FLJ00256 pro...    50   3e-04
AB290182_1(AB290182|pid:none) Homo sapiens mRNA for MYO7B varian...    50   3e-04
BC035615_1(BC035615|pid:none) Homo sapiens myosin VIIB, mRNA (cD...    50   3e-04
BC027875_1(BC027875|pid:none) Homo sapiens myosin XVB pseudogene...    50   5e-04
A59233(A59233) myosin VII-like protein - fruit fly (Drosophila m...    50   5e-04
AE014134_1365(AE014134|pid:none) Drosophila melanogaster chromos...    50   5e-04
AK026339_1(AK026339|pid:none) Homo sapiens cDNA: FLJ22686 fis, c...    50   5e-04
AL713730_1(AL713730|pid:none) Homo sapiens mRNA; cDNA DKFZp667C0...    50   5e-04
CP000386_764(CP000386|pid:none) Rubrobacter xylanophilus DSM 994...    49   6e-04
DQ499010_1(DQ499010|pid:none) Chlamydomonas reinhardtii kinesin ...    48   0.002
BC105355_1(BC105355|pid:none) Bos taurus hypothetical LOC508470,...    48   0.002
BA000011_866(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA,...    47   0.004
(P47808) RecName: Full=High molecular weight form of myosin-1; A...    45   0.009
A23662(A23662)myosin I, high molecular weight - Acanthamoeba sp.       45   0.009
(Q622K8) RecName: Full=Unconventional myosin heavy chain 6;            42   0.078
AE014297_3038(AE014297|pid:none) Drosophila melanogaster chromos...    42   0.078
BT003438_1(BT003438|pid:none) Drosophila melanogaster SD01504 fu...    42   0.078
AY069438_1(AY069438|pid:none) Drosophila melanogaster LD14917 fu...    42   0.10
BT011332_1(BT011332|pid:none) Drosophila melanogaster SD18415 fu...    42   0.10
(Q9V3Z6) RecName: Full=Myosin-VIIa;          Short=DmVIIa; AltNa...    42   0.10
T21266(T21266) hypothetical protein F22E10.1 - Caenorhabditis el...    42   0.13
AY216263_1(AY216263|pid:none) Gossypium hirsutum kinesin-like ca...    41   0.17
CR628365_11(CR628365|pid:none) Zebrafish DNA sequence from clone...    41   0.17
(P91443) RecName: Full=Unconventional myosin heavy chain 6;  &T2...    41   0.17
BC172349_1(BC172349|pid:none) Synthetic construct Homo sapiens c...    41   0.23
BC156494_1(BC156494|pid:none) Synthetic construct Mus musculus c...    41   0.23
AB290181_1(AB290181|pid:none) Homo sapiens mRNA for MYO7A varian...    41   0.23
AB091825_1(AB091825|pid:none) Rattus norvegicus mRNA for myosin ...    41   0.23
AK052692_1(AK052692|pid:none) Mus musculus 0 day neonate kidney ...    41   0.23
AY821854_1(AY821854|pid:none) Mus musculus myosin VIIa isoform 2...    41   0.23
AY821853_1(AY821853|pid:none) Mus musculus myosin VIIa isoform 1...    41   0.23
AE017261_479(AE017261|pid:none) Picrophilus torridus DSM 9790, c...    40   0.30
AE016830_673(AE016830|pid:none) Enterococcus faecalis V583, comp...    40   0.30
EF087382_1(EF087382|pid:none) Picea sitchensis clone WS02750_F21...    40   0.30
AB209629_1(AB209629|pid:none) Homo sapiens mRNA for myosin VIIA ...    40   0.39
AJ404002_1(AJ404002|pid:none) Danio rerio mRNA for myosin VIIA (...    40   0.39
AJ404001_1(AJ404001|pid:none) Danio rerio mRNA for myosin VIIA (...    40   0.39
BC163570_1(BC163570|pid:none) Danio rerio myosin VIIa, mRNA (cDN...    40   0.39
EU480938_1(EU480938|pid:none) Caenorhabditis remanei strain PB24...    40   0.39
AK295896_1(AK295896|pid:none) Homo sapiens cDNA FLJ56902 complet...    40   0.51
EU480941_1(EU480941|pid:none) Caenorhabditis remanei strain PB27...    40   0.51
T03792(T03792) kinesin-related protein tck1 - common tobacco  &U...    39   0.66
EU480934_1(EU480934|pid:none) Caenorhabditis remanei strain PB24...    39   0.66
EU480929_1(EU480929|pid:none) Caenorhabditis remanei strain PB21...    39   0.66
L40358_1(L40358|pid:none) Arabidopsis thaliana calmodulin-bindin...    39   0.87
L46702_1(L46702|pid:none) Solanum tuberosum kinesin heavy chain-...    39   0.87
AF002678_1(AF002678|pid:none) Arabidopsis thaliana kinesin-like ...    39   0.87
AY063811_1(AY063811|pid:none) Arabidopsis thaliana putative kine...    39   0.87
AB018108_10(AB018108|pid:none) Arabidopsis thaliana genomic DNA,...    39   0.87
T21269(T21269)hypothetical protein F22E10.4 - Caenorhabditis ele...    39   0.87
BC060637_1(BC060637|pid:none) Mus musculus DNA segment, Chr 15, ...    39   1.1
BC060065_1(BC060065|pid:none) Mus musculus DNA segment, Chr 15, ...    39   1.1
AK035479_1(AK035479|pid:none) Mus musculus adult male urinary bl...    39   1.1
EU480932_1(EU480932|pid:none) Caenorhabditis remanei strain PB21...    39   1.1
AF128532_1(AF128532|pid:none) Onchocerca volvulus P-glycoprotein...    39   1.1
EU480928_1(EU480928|pid:none) Caenorhabditis remanei strain PB20...    39   1.1
EU480930_1(EU480930|pid:none) Caenorhabditis remanei strain PB21...    39   1.1
EU480943_1(EU480943|pid:none) Caenorhabditis remanei strain SB14...    39   1.1
AE007869_992(AE007869|pid:none) Agrobacterium tumefaciens str. C...    39   1.1
BT066408_1(BT066408|pid:none) Zea mays full-length cDNA clone ZM...    38   1.5
AY519858_1(AY519858|pid:none) Caenorhabditis elegans P-glycoprot...    38   1.5
BC138338_1(BC138338|pid:none) Mus musculus myosin VIIB, mRNA (cD...    38   1.9
(Q99MZ6) RecName: Full=Myosin-VIIb;                                    38   1.9
AF242411_1(AF242411|pid:none) Mus musculus myosin-VIIb mRNA, com...    38   1.9
AK220152_1(AK220152|pid:none) Mus musculus mRNA for mFLJ00256 pr...    38   1.9
(Q00IB7) RecName: Full=Pleckstrin homology domain-containing fam...    38   1.9
BC026416_1(BC026416|pid:none) Mus musculus myosin VIIB, mRNA (cD...    38   1.9
(Q9C0H5) RecName: Full=Uncharacterized protein KIAA1688;  &AB384...    37   2.5
AK296353_1(AK296353|pid:none) Homo sapiens cDNA FLJ61300 complet...    37   2.5
AM162625_1(AM162625|pid:none) Leptospira biflexa serovar Patoc L...    37   2.5
CP000487_1681(CP000487|pid:none) Campylobacter fetus subsp. fetu...    37   3.3
BX571857_866(BX571857|pid:none) Staphylococcus aureus strain MSS...    37   3.3
BA000033_875(BA000033|pid:none) Staphylococcus aureus subsp. aur...    37   3.3
AB022222_6(AB022222|pid:none) Arabidopsis thaliana genomic DNA, ...    37   3.3
AP009324_989(AP009324|pid:none) Staphylococcus aureus subsp. aur...    37   3.3
BT023452_1(BT023452|pid:none) Arabidopsis thaliana At5g40090 gen...    37   3.3
CP000236_806(CP000236|pid:none) Ehrlichia chaffeensis str. Arkan...    37   3.3
M88598_1(M88598|pid:none) Entamoeba histolytica P-glycoprotein-2...    37   3.3
BT001154_1(BT001154|pid:none) Arabidopsis thaliana Unknown prote...    37   4.3
AK121721_1(AK121721|pid:none) Oryza sativa Japonica Group cDNA c...    36   5.6
AP008209_20(AP008209|pid:none) Oryza sativa (japonica cultivar-g...    36   5.6
AP009179_2362(AP009179|pid:none) Sulfurovum sp. NBC37-1 genomic ...    36   5.6
X02893_1(X02893|pid:none) Candida glabrata mitochondrial gene fo...    36   7.3
AF223412_1(AF223412|pid:none) Zea mays kinesin-like calmodulin b...    36   7.3
AK173337_1(AK173337|pid:none) Mus musculus premature mRNA for mK...    36   7.3
S04682(S04682)ribosomal protein var1 - yeast (Candida glabrata) ...    36   7.3
AK029252_1(AK029252|pid:none) Mus musculus 0 day neonate head cD...    36   7.3
BC125583_1(BC125583|pid:none) Mus musculus pleckstrin homology d...    36   7.3
AM180355_3070(AM180355|pid:none) Clostridium difficile 630 compl...    36   7.3
AK294036_1(AK294036|pid:none) Homo sapiens cDNA FLJ59674 complet...    35   9.6
AK297179_1(AK297179|pid:none) Homo sapiens cDNA FLJ55985 complet...    35   9.6
AP008210_2195(AP008210|pid:none) Oryza sativa (japonica cultivar...    35   9.6
AL606646_20(AL606646|pid:none) Oryza sativa genomic DNA, chromos...    35   9.6
AY331133_1(AY331133|pid:none) Mus musculus myosin XVA isoform 2a...    35   9.6
AL596090_18(AL596090|pid:none) Mouse DNA sequence from clone RP2...    35   9.6
AL713794_1(AL713794|pid:none) Homo sapiens mRNA; cDNA DKFZp434O1...    35   9.6
AL596090_16(AL596090|pid:none) Mouse DNA sequence from clone RP2...    35   9.6
CR855038_22(CR855038|pid:none) Oryza sativa genomic DNA, chromos...    35   9.6
A59295(A59295) unconventional myosin-15 - mouse  &AF144095_1(AF1...    35   9.6
AM420293_4302(AM420293|pid:none) Saccharopolyspora erythraea NRR...    35   9.6
AP009493_197(AP009493|pid:none) Streptomyces griseus subsp. gris...    35   9.6
AE000520_338(AE000520|pid:none) Treponema pallidum subsp. pallid...    35   9.6
AE015450_518(AE015450|pid:none) Mycoplasma gallisepticum strain ...    35   9.6
AJ851392_1(AJ851392|pid:none) Gallus gallus mRNA for hypothetica...    35   9.6
CP001037_1526(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    35   9.6
CP001390_2338(CP001390|pid:none) Geobacter sp. FRC-32, complete ...    35   9.6

>(Q8T1P1) RecName: Full=Uncharacterized protein
           DDB_G0273453/DDB_G0273565;
           &AC116330_6(AC116330|pid:none)
          Length = 839

 Score =  271 bits (694), Expect = 6e-71
 Identities = 133/133 (100%), Positives = 133/133 (100%)
 Frame = -1

Query: 399 QPPIYCVSIQRNIFYYIIGHILSCYQYSKPQYIIDFPVSCEVQDKKHSFTILLGGTSGCG 220
           QPPIYCVSIQRNIFYYIIGHILSCYQYSKPQYIIDFPVSCEVQDKKHSFTILLGGTSGCG
Sbjct: 207 QPPIYCVSIQRNIFYYIIGHILSCYQYSKPQYIIDFPVSCEVQDKKHSFTILLGGTSGCG 266

Query: 219 KSTLTALLASRIGFTAVISTDNIRQLLRKFISRQESPILWASTYHAGEIISNPSLSHKEK 40
           KSTLTALLASRIGFTAVISTDNIRQLLRKFISRQESPILWASTYHAGEIISNPSLSHKEK
Sbjct: 267 KSTLTALLASRIGFTAVISTDNIRQLLRKFISRQESPILWASTYHAGEIISNPSLSHKEK 326

Query: 39  ILQGYEAQNEMIF 1
           ILQGYEAQNEMIF
Sbjct: 327 ILQGYEAQNEMIF 339

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 3,555,312,224
Number of extensions: 66898593
Number of successful extensions: 159325
Number of sequences better than 10.0: 129
Number of HSP's gapped: 159181
Number of HSP's successfully gapped: 229
Length of query: 792
Length of database: 1,051,180,864
Length adjustment: 137
Effective length of query: 655
Effective length of database: 607,772,281
Effective search space: 398090844055
Effective search space used: 398090844055
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.85  gvh: 0.45  alm: 0.37  top: 0.27  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U15592-1 is cyt
VS (DIR, S) 0
VH (FL, L) 2
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 3
CH (FL, L) 3
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0