NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15584-1
Contig ID Contig-U15584-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15584-1 (Contig-U15584-1Q) /CSM_Contig/Contig-U15584-1Q.Seq.d
ATATAATCTCTTAAAAATTTTAAAGACAAATAAATAATAATTTTATATAT
TACAAACTATCATACGGTTTGTAATTTTTATTTTTTTTTTTTATTTGGGT
TTTTTTATTTTTTTTTTTAAAATTTNTNCTNGANANCAAAAAATTAAAAA
AAAATTAAAAAAAAATTAAAAAAAAAATTTTAAA----------CACTGT
TGGCCTACTGGAATGTCAACAGTAGTTTTACATGATATAAGTACATCAAA
ATCATATATACCATTTATACATTATGTATATGAAGGTGAAGAAATACCAG
ATAGTTTATATGTAGAATCTGAACCAATCAATAGTGAATCATCAAAGAAT
AATAATAATAGAGTTTGTATTGCCCCATTAGAGATTTATTTAAATAAAAA
TGGTGATATTGAAAATATAATATCATTAAGAGATGATTCAACAATTACTG
AAATTACAATAGATCATGGTAATGATTCACCCAATGGTGGTAATAATAAT
AATAGTAATAATAACAATGGATCAGTACTACATATTCATGGTATATTCCC
AAAATTAAACAATGTAGAAATAAAAGAAAATAGTTTAAGTATTAGTAATT
TTGAAATTTCAAAACCAACAATAGATTTAATACAAGAATATAATGATAGA
AACAATTTAATTAAAACTATGCTACTAGAGGTTGAAAAAGAAAATTATTT
TAGTATCTCTAAAATTAAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAGCAACAGCAACAGCAGCAACAACAACAACAACAGCAA
CAACAACAACAGCCACAACAACAACAACAAGAACAGCAACAAGAACAACA
ACAACACCAACAACAACACGAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAGCATCAAAGTCAAAAACAACC
AGTTCAACCAATTACAATTTTAACAAAAAAGAAAGCAGCATTACAAGCAC
AACAACTACAACAACAATCACAACAAAATAATTTATTATCAACTTTTAAT
GATCAATATAATAAACAAAAGAGTCAACCATCATCATATCCAATCATTCC
TGAAAGTTATATAAATACAAGATTTAATTTGGAAAAATTCAATGTTCAAG
ATTTATCTAATCATTTTAAAACTACAAGTTAATAAATAATAAATAATAAA
TAATAAATAATAAATAATAAATAATAAATAATAATAATAAAAGATTATAT
TGATAATTTTACTTATTTATTTTATTTTATTTTAAATTTTAATTATTATT
ATTGTTATTATTATTATTACATAA
Gap gap included
Contig length 1364
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 10
Number of EST 12
Link to clone list U15584
List of clone(s) 

est1=CHK389F,1,127
est2=SHH842F,1,184
est3=AFF524F,6,127
est4=VFK660F,185,770
est5=AFF524Z,199,781
est6=AHO169F,642,997
est7=VFK660Z,710,1114
est8=SLF410Z,722,1274
est9=SLJ883F,740,989
est10=AFL213Z,890,1261
est11=VSF851Z,947,1316
est12=SLA541F,1122,1364
Translated Amino Acid sequence 
iis*kf*rqinnnfiyyklsygl*flffffiwvflffflkfxlxxkklkkn*KKIKKKIL
---

---HCWPTGMSTVVLHDISTSKSYIPFIHYVYEGEEIPDSLYVESEPINSESSKNNNNRV
CIAPLEIYLNKNGDIENIISLRDDSTITEITIDHGNDSPNGGNNNNSNNNNGSVLHIHGI
FPKLNNVEIKENSLSISNFEISKPTIDLIQEYNDRNNLIKTMLLEVEKENYFSISKIKQQ
QQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQQQQQEQQQEQQQHQQQHEQQQQQQQQQQQ
QQQQQQQQQQQQQQQQQQQQQQQQQHQSQKQPVQPITILTKKKAALQAQQLQQQSQQNNL
LSTFNDQYNKQKSQPSSYPIIPESYINTRFNLEKFNVQDLSNHFKTTS**iinnk**iin
nk**iiiikdyidnftylfyfilnfnyyycyyyyyi
Translated Amino Acid sequence (All Frames) 
Frame A:
i*slknfkdk*iiilyitnyhtvcnfyffflfgffyfff*nxxxxxkn*kkikkklkkkf
*---

---HCWPTGMSTVVLHDISTSKSYIPFIHYVYEGEEIPDSLYVESEPINSESSKNNNNRV
CIAPLEIYLNKNGDIENIISLRDDSTITEITIDHGNDSPNGGNNNNSNNNNGSVLHIHGI
FPKLNNVEIKENSLSISNFEISKPTIDLIQEYNDRNNLIKTMLLEVEKENYFSISKIKQQ
QQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQQQQQEQQQEQQQHQQQHEQQQQQQQQQQQ
QQQQQQQQQQQQQQQQQQQQQQQQQHQSQKQPVQPITILTKKKAALQAQQLQQQSQQNNL
LSTFNDQYNKQKSQPSSYPIIPESYINTRFNLEKFNVQDLSNHFKTTS**iinnk**iin
nk**iiiikdyidnftylfyfilnfnyyycyyyyyi

Frame B:
ynllkilktnk**fyilqtiirfvififffylgffifffkixxxxqkikkklkkn*kknf
k---

---tvgllecqq*fymi*vhqnhiyhlyimymkvkkyqivym*nlnqsivnhqriiiief
vlph*rfi*ikmvilki*yh*emiqqllklq*imvmihpmvviiiiviitmdqyyifmvy
sqn*tm*k*kkiv*vlvilkfqnqq*i*yknimieti*lklcy*rlkkkiilvslklnnn
nnnnnnnnnnnnsnsnssnnnnnsnnnnshnnnnknsnknnnntnnntnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnsikvknnqfnqlqf*qkrkqhykhnnynnnhnkiiy
yqllminiinkrvnhhhiqsflkvi*iqdliwknsmfkiyliilklqvnk**iinnk**i
innk****kiiliilliyfilf*iliiiiviiiit*

Frame C:
iis*kf*rqinnnfiyyklsygl*flffffiwvflffflkfxlxxkklkkn*KKIKKKIL
---

---llaywnvnssft*ykyikiiytiytlci*r*rntr*ficri*tnq**iike****sl
ycpirdlfk*kw*y*kyniikr*fnny*nynrsw**ftqww********qwisttyswyi
pkikqcrnkrk*fky**f*nfktnnrfntri***kqfn*nyatrg*krklf*yl*n*ttt
ttttttttttttatataatttttattttatttttrtatrttttptttrtttttttttttt
ttttttttttttttttttttttttaskskttsstnynfnkkessitsttttttittk*fi
inf**si**tkestiiisnhs*klykyki*fgkiqcsrfi*sf*nyklinnk**iinnk*
*iinnnnkrly**fylfilfyfkf*lllllllllh
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15584-1 (Contig-U15584-1Q)
/CSM_Contig/Contig-U15584-1Q.Seq.d
         (1374 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15584-1 (Contig-U15584-1Q) /CSM_Contig/Conti...   587  e-167
Contig-U04434-1 (Contig-U04434-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U15711-1 (Contig-U15711-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U13940-1 (Contig-U13940-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U10688-1 (Contig-U10688-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U01588-1 (Contig-U01588-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U16591-1 (Contig-U16591-1Q) /CSM_Contig/Conti...    40  0.009
Contig-U16518-1 (Contig-U16518-1Q) /CSM_Contig/Conti...    40  0.009
Contig-U16140-1 (Contig-U16140-1Q) /CSM_Contig/Conti...    40  0.009
Contig-U15889-1 (Contig-U15889-1Q) /CSM_Contig/Conti...    40  0.009

>Contig-U15584-1 (Contig-U15584-1Q) /CSM_Contig/Contig-U15584-1Q.Seq.d
          Length = 1374

 Score =  587 bits (296), Expect = e-167
 Identities = 296/296 (100%)
 Strand = Plus / Plus

                                                                       
Query: 195 cactgttggcctactggaatgtcaacagtagttttacatgatataagtacatcaaaatca 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 cactgttggcctactggaatgtcaacagtagttttacatgatataagtacatcaaaatca 254

                                                                       
Query: 255 tatataccatttatacattatgtatatgaaggtgaagaaataccagatagtttatatgta 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tatataccatttatacattatgtatatgaaggtgaagaaataccagatagtttatatgta 314

                                                                       
Query: 315 gaatctgaaccaatcaatagtgaatcatcaaagaataataataatagagtttgtattgcc 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gaatctgaaccaatcaatagtgaatcatcaaagaataataataatagagtttgtattgcc 374

                                                                       
Query: 375 ccattagagatttatttaaataaaaatggtgatattgaaaatataatatcattaagagat 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ccattagagatttatttaaataaaaatggtgatattgaaaatataatatcattaagagat 434

                                                                   
Query: 435 gattcaacaattactgaaattacaatagatcatggtaatgattcacccaatggtgg 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gattcaacaattactgaaattacaatagatcatggtaatgattcacccaatggtgg 490


 Score =  402 bits (203), Expect = e-112
 Identities = 203/203 (100%)
 Strand = Plus / Plus

                                                                       
Query: 515 caatggatcagtactacatattcatggtatattcccaaaattaaacaatgtagaaataaa 574
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 caatggatcagtactacatattcatggtatattcccaaaattaaacaatgtagaaataaa 574

                                                                       
Query: 575 agaaaatagtttaagtattagtaattttgaaatttcaaaaccaacaatagatttaataca 634
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 agaaaatagtttaagtattagtaattttgaaatttcaaaaccaacaatagatttaataca 634

                                                                       
Query: 635 agaatataatgatagaaacaatttaattaaaactatgctactagaggttgaaaaagaaaa 694
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 agaatataatgatagaaacaatttaattaaaactatgctactagaggttgaaaaagaaaa 694

                                  
Query: 695 ttattttagtatctctaaaatta 717
           |||||||||||||||||||||||
Sbjct: 695 ttattttagtatctctaaaatta 717


 Score =  303 bits (153), Expect = 4e-82
 Identities = 153/153 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1077 aataatttattatcaacttttaatgatcaatataataaacaaaagagtcaaccatcatca 1136
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1077 aataatttattatcaacttttaatgatcaatataataaacaaaagagtcaaccatcatca 1136

                                                                        
Query: 1137 tatccaatcattcctgaaagttatataaatacaagatttaatttggaaaaattcaatgtt 1196
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1137 tatccaatcattcctgaaagttatataaatacaagatttaatttggaaaaattcaatgtt 1196

                                             
Query: 1197 caagatttatctaatcattttaaaactacaagt 1229
            |||||||||||||||||||||||||||||||||
Sbjct: 1197 caagatttatctaatcattttaaaactacaagt 1229


 Score =  147 bits (74), Expect = 5e-35
 Identities = 74/74 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  atataatctcttaaaaattttaaagacaaataaataataattttatatattacaaactat 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  atataatctcttaaaaattttaaagacaaataaataataattttatatattacaaactat 60

                        
Query: 61 catacggtttgtaa 74
          ||||||||||||||
Sbjct: 61 catacggtttgtaa 74


 Score =  123 bits (62), Expect = 8e-28
 Identities = 62/62 (100%)
 Strand = Plus / Plus

                                                                        
Query: 980  gcatcaaagtcaaaaacaaccagttcaaccaattacaattttaacaaaaaagaaagcagc 1039
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980  gcatcaaagtcaaaaacaaccagttcaaccaattacaattttaacaaaaaagaaagcagc 1039

              
Query: 1040 at 1041
            ||
Sbjct: 1040 at 1041


 Score = 32.2 bits (16), Expect = 2.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 599 ttttgaaatttcaaaa 614
           ||||||||||||||||
Sbjct: 614 ttttgaaatttcaaaa 599


>Contig-U04434-1 (Contig-U04434-1Q) /CSM_Contig/Contig-U04434-1Q.Seq.d
          Length = 560

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 330 aatagtgaatcatcaaagaataataataata 360
           ||||||| ||||||||| |||||||||||||
Sbjct: 121 aatagtggatcatcaaataataataataata 151


>Contig-U15711-1 (Contig-U15711-1Q) /CSM_Contig/Contig-U15711-1Q.Seq.d
          Length = 2517

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 195 cactgttggcctactggaatg 215
           |||||||||||||||||||||
Sbjct: 1   cactgttggcctactggaatg 21


 Score = 30.2 bits (15), Expect = 8.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 1191 aatgttcaagattta 1205
            |||||||||||||||
Sbjct: 887  aatgttcaagattta 901


 Score = 30.2 bits (15), Expect = 8.6
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 343 caaagaataataataatag 361
           |||| ||||||||||||||
Sbjct: 289 caaataataataataatag 307


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 47,514
Number of Sequences: 8402
Number of extensions: 47514
Number of successful extensions: 15280
Number of sequences better than 10.0: 1123
length of query: 1374
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1358
effective length of database: 7,941,110
effective search space: 10784027380
effective search space used: 10784027380
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 2. 1
Homology vs DNA 
Query= Contig-U15584-1 (Contig-U15584-1Q) /CSM_Contig/Contig-U15584-1Q.Seq.d
         (1374 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ415438) Dictyostelium discoideum cDNA clone:ddv22g16, 5' ...   587   0.0    2
(BJ329547) Dictyostelium discoideum cDNA clone:dda25m11, 5' ...   553   0.0    2
(AU265892) Dictyostelium discoideum vegetative cDNA clone:VS...   299   1e-76  1
(AU052970) Dictyostelium discoideum slug cDNA, clone SLF410.      299   1e-76  1
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...   147   1e-30  1
(BJ395550) Dictyostelium discoideum cDNA clone:dds39d12, 5' ...   147   1e-30  1
(BJ367443) Dictyostelium discoideum cDNA clone:ddc42b23, 5' ...   147   1e-30  1
(BJ323777) Dictyostelium discoideum cDNA clone:dda12o05, 5' ...   137   1e-27  1
(AL844509) Plasmodium falciparum chromosome 13.                    40   0.008  14
(AC119414) Medicago truncatula clone mth2-23d7, complete seq...    42   0.010  2
(CR931809) Medicago truncatula chromosome 5 clone mth2-35j21...    42   0.010  2
(AC005505) Plasmodium falciparum chromosome 12 clone PFYAC18...    42   0.013  8
(BD452781) Diagnosis of Diseases Associated with tumor suppr...    34   0.025  7
(AX251260) Sequence 228 from Patent WO0168912.                     34   0.025  7
(BJ416412) Dictyostelium discoideum cDNA clone:ddv26i10, 5' ...    36   0.035  4
(AE014850) Plasmodium falciparum 3D7 chromosome 12, section ...    42   0.053  8
(DU720783) pyo62f10.g1 VT847 Caenorhabditis briggsae genomic...    52   0.056  1
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    38   0.079  11
(CU550730) Zebrafish DNA sequence from clone CH1073-173B15 i...    36   0.11   5
(AC115605) Dictyostelium discoideum chromosome 2 map 5817431...    38   0.11   5
(AL929340) Zebrafish DNA sequence from clone CH211-248N16 in...    46   0.11   5
(BM882102) rb25h03.y1 Meloidogyne incognita egg pAMP1 Bird M...    40   0.17   2
(BI745125) rk96e05.y1 Meloidogyne javanica egg pAMP1 v6 Chia...    40   0.17   2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    36   0.18   12
(BM881866) rb14h09.y1 Meloidogyne incognita egg pAMP1 Bird M...    40   0.18   2
(BM880738) rb17g02.y1 Meloidogyne incognita egg pAMP1 Bird M...    40   0.19   2
(CI001090) Oryza sativa Japonica Group cDNA, clone: 003-M017...    38   0.21   2
(CU138558) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   0.22   6
(AC018889) Homo sapiens BAC clone RP11-479F13 from 2, comple...    50   0.22   1
(CC267197) CH261-1J23_RM1.1 CH261 Gallus gallus genomic clon...    50   0.22   1
(CS468878) Sequence 69 from Patent EP1748080.                      38   0.24   9
(CS468877) Sequence 68 from Patent EP1748080.                      38   0.24   9
(CS419355) Sequence 69 from Patent WO2006094836.                   38   0.24   9
(CS419354) Sequence 68 from Patent WO2006094836.                   38   0.24   9
(Z97348) Plasmodium falciparum MAL3P1.                             34   0.25   8
(ER857765) PPTF931TR Solanum tuberosum RHPOTKEY BAC ends Sol...    42   0.26   2
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   0.27   13
(AL031745) Plasmodium falciparum DNA from MAL1P2.                  36   0.27   12
(BV886288) pRRL2:Newb:20080411:265630 USMARC Pig Breed SNP D...    38   0.27   2
(CJ455044) Macaca fascicularis mRNA, clone: QflA-20812, 5' e...    40   0.28   2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    38   0.30   9
(AC005140) Plasmodium falciparum chromosome 12 clone PFYACB8...    34   0.31   11
(BJ413725) Dictyostelium discoideum cDNA clone:ddv16b24, 5' ...    32   0.35   4
(EJ427260) 1093015233707 Global-Ocean-Sampling_GS-28-01-01-1...    34   0.37   4
(BJ332653) Dictyostelium discoideum cDNA clone:dda39i23, 5' ...    38   0.41   3
(AC097036) Rattus norvegicus clone CH230-208K21, WORKING DRA...    38   0.48   2
(AC129403) Rattus norvegicus clone CH230-81J19, WORKING DRAF...    38   0.48   2
(AC109091) Rattus norvegicus clone CH230-226B10, *** SEQUENC...    38   0.48   2
(AC161941) Bos taurus clone CH240-113B1, WORKING DRAFT SEQUE...    36   0.48   2
(AC218426) Bos taurus clone CH240-283B8, WORKING DRAFT SEQUE...    36   0.48   2
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont...    34   0.52   11
(AB267275) Rhagophthalmus ohbai mitochondrial DNA, complete ...    34   0.64   5
(AC149546) Medicago truncatula chromosome 8 clone mth2-70o13...    36   0.64   7
(EY402460) pOP-CNH02036_EST_C_1_pSK_SK CNH (Oil Palm Non-Emb...    38   0.64   2
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    34   0.69   17
(AX344507) Sequence 354 from Patent WO0200926.                     36   0.75   6
(AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    36   0.76   10
(BJ330948) Dictyostelium discoideum cDNA clone:dda33g10, 5' ...    42   0.82   2
(X95275) Plasmodium falciparum complete gene map of plastid-...    36   0.85   6
(AC162018) Bos taurus clone CH240-100P1, WORKING DRAFT SEQUE...    48   0.88   1
(BJ370229) Dictyostelium discoideum cDNA clone:ddc53j09, 5' ...    36   0.88   2
(AZ282909) RPCI-23-125D9.TV RPCI-23 Mus musculus genomic clo...    44   0.96   2
(AC187168) Glycine max clone gmp1-12a14, complete sequence.        34   0.98   10
(CT737151) Zebrafish DNA sequence from clone CH211-253B1 in ...    36   1.0    9
(ED014300) MUGQ_CH252P102P03T7_CN30_050 CHORI-252 Vervet Mon...    42   1.1    2
(AY955840) Paracoccidioides brasiliensis strain Pb18 mitocho...    34   1.1    8
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   1.4    12
(BX324177) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   1.4    7
(CU326391) Medicago truncatula chromosome 5 clone mth2-182c4...    38   1.4    7
(AY894733) Campylopus savannarum AtpB (atpB) gene, partial c...    36   1.5    2
(AL844506) Plasmodium falciparum chromosome  7.                    36   1.6    14
(AF165818) Guillardia theta nucleomorph chromosome 1, comple...    32   1.6    12
(AY894732) Campylopus savannarum AtpB (atpB) gene, partial c...    36   1.7    2
(AM628161) Entamoeba dispar GSS, clone dispar27c05.q1k.            36   1.7    3
(BJ411721) Dictyostelium discoideum cDNA clone:ddv5d16, 5' e...    38   1.7    2
(AC176242) Strongylocentrotus purpuratus clone R3-3061L06, W...    36   1.7    2
(BJ336178) Dictyostelium discoideum cDNA clone:dda53c05, 5' ...    40   1.8    2
(AC184380) Strongylocentrotus purpuratus clone R3-3103F2, WO...    36   1.8    2
(AC196303) Solanum lycopersicum chromosome 5 clone C05HBa001...    38   1.8    4
(AC118680) Mus musculus chromosome 8, clone RP24-381G7, comp...    36   1.8    2
(AC179613) Strongylocentrotus purpuratus clone R3-1028K21, W...    36   1.8    2
(AC006281) Plasmodium falciparum chromosome 12 clone PFYACB8...    36   1.9    7
(DQ642846) Plasmodium falciparum HB3 apicoplast, complete ge...    36   1.9    7
(BJ387771) Dictyostelium discoideum cDNA clone:dds4g24, 5' e...    38   2.0    3
(BJ411720) Dictyostelium discoideum cDNA clone:ddv5d15, 5' e...    38   2.1    2
(AC229834) Monodelphis domestica clone VMRC18-667H7, WORKING...    40   2.1    8
(AM624110) Entamoeba dispar GSS, clone dispar106e11.p1k.           36   2.3    3
(BJ335223) Dictyostelium discoideum cDNA clone:dda49l09, 5' ...    34   2.3    3
(CJ484951) Macaca fascicularis mRNA, clone: QtsA-12516, 5' e...    34   2.3    3
(DE937095) Macropus eugenii DNA, BAC clone: MEB1-130C10_F, 5...    34   2.3    2
(AM464969) Vitis vinifera contig VV78X271917.8, whole genome...    42   2.4    3
(EU358891) Lipaphis pseudobrassicae 12S small subunit riboso...    34   2.4    3
(BX157123) Danio rerio genomic clone DKEY-125N1, genomic sur...    34   2.4    2
(AZ617326) 1M0448K04R Mouse 10kb plasmid UUGC1M library Mus ...    36   2.4    2
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    34   2.4    15
(AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6...    40   2.4    9
(AJ522317) Arabidopsis thaliana T-DNA flanking sequence, lef...    34   2.4    2
(AY159935) Campylopus asperifolius isolate C50atpB atpB-rbcL...    36   2.4    2
(CU761906) A BAC library has been constructed from PN40024 g...    40   2.4    2
(AC109465) Homo sapiens chromosome 5 clone RP11-298P6, compl...    40   2.5    8
(AP002017) Homo sapiens genomic DNA, chromosome 4q22-q24, cl...    44   2.5    5
(AY551363) Campylopus introflexus isolate C85inAU atpB-rbcL ...    36   2.6    2
(AY159908) Campylopus introflexus isolate C85atpB atpB-rbcL ...    36   2.6    2
(AY159913) Campylopus tallulensis isolate C62atpB atpB-rbcL ...    36   2.6    2
(AY551367) Campylopus introflexus isolate CinD atpB-rbcL int...    36   2.6    2
(AY551366) Campylopus introflexus isolate CinUSA atpB-rbcL i...    36   2.6    2
(AY551365) Campylopus introflexus isolate C129CiCh2 atpB-rbc...    36   2.6    2
(AY159917) Campylopus fragilis isolate C71atpB atpB-rbcL int...    36   2.6    2
(AY159916) Campylopus lonchochaete isolate 157atpB atpB-rbcL...    36   2.6    2
(AY159915) Campylopus cryptopodioides isolate C69atpB atpB-r...    36   2.6    2
(AY159914) Campylopus julicaulis isolate C22atpB atpB-rbcL i...    36   2.6    2
(AM642575) Entamoeba dispar GSS, clone dispar95h05.p1k.            36   2.6    3
(AY159925) Campylopus australis isolate C7atpB atpB-rbcL int...    36   2.6    2
(AY159924) Campylopus australis isolate C14atpB atpB-rbcL in...    36   2.6    2
(AY551361) Campylopus fragilis isolate C189frKI atpB-rbcL in...    36   2.6    2
(AY551360) Campylopus fragilis isolate C181frECU atpB-rbcL i...    36   2.6    2
(AY551359) Campylopus flexuosus isolate C177frHON atpB-rbcL ...    36   2.6    2
(AY159922) Bryohumbertia filifolia isolate Bfi2atpB atpB-rbc...    36   2.6    2
(AY159905) Pilopogon laevis isolate PlaatpB atpB-rbcL interg...    36   2.6    2
(AY576438) Campylopus pilifer isolate C130 atpB-rbcL interge...    36   2.6    2
(AY159933) Campylopus bicolor isolate C68atpB atpB-rbcL inte...    36   2.6    2
(AY159927) Campylopus pilifer var. lamellatus isolate C78atp...    36   2.6    2
(AY159926) Campylopus bicolor isolate C77atpB atpB-rbcL inte...    36   2.6    2
(AY159918) Campylopus flagelliferus isolate C70atpB atpB-rbc...    36   2.6    2
(AY159911) Campylopus hensii isolate C20atpB atpB-rbcL inter...    36   2.6    2
(AY159910) Campylopus dichrostris isolate C19atpB atpB-rbcL ...    36   2.6    2
(AY551354) Campylopus robillardei isolate C117roREU atpB-rbc...    36   2.6    2
(AY551353) Campylopus flexuosus isolate C185flRWA atpB-rbcL ...    36   2.6    2
(AY159919) Campylopus flexuosus isolate CfatpB atpB-rbcL int...    36   2.6    2
(AY159912) Campylopus robillardei isolate C21atpB atpB-rbcL ...    36   2.6    2
(AY159930) Campylopus pilifer isolate C12atpB atpB-rbcL inte...    36   2.6    2
(AY159920) Bryohumbertia flavicoma isolate BfatpB atpB-rbcL ...    36   2.6    2
(AY159909) Campylopus savannarum isolate C15atpB atpB-rbcL i...    36   2.6    2
(AY159904) Pilopogon guadalupensis isolate PgatpB atpB-rbcL ...    36   2.6    2
(AY159934) Campylopus acuminatus var. kirkii isolate C73atpB...    36   2.6    2
(AY159921) Bryohumbertia subcomosa isolate BsuatpB atpB-rbcL...    36   2.6    2
(AY551352) Pilopogon africanus isolate Pafr atpB-rbcL interg...    36   2.6    2
(AY159923) Campylopus anderssonii isolate C48atpB atpB-rbcL ...    36   2.6    2
(AY159903) Pilopogon africanus isolate PaatpB atpB-rbcL inte...    36   2.6    2
(AY159902) Microcampylopus laevigatus isolate MlatpB atpB-rb...    36   2.6    2
(AY576439) Campylopus pilifer isolate C131 atpB-rbcL interge...    36   2.6    2
(AY551371) Campylopus pilifer isolate C135piAZ atpB-rbcL int...    36   2.6    2
(AY551370) Campylopus pilifer isolate C134piI atpB-rbcL inte...    36   2.6    2
(AY551369) Campylopus pilifer isolate C131piCV atpB-rbcL int...    36   2.6    2
(AY576440) Campylopus pilifer isolate C134 atpB-rbcL interge...    36   2.6    2
(AY159932) Campylopus richardii isolate C18atpB atpB-rbcL in...    36   2.6    2
(AY159931) Campylopus aureonitens isolate C13atpB atpB-rbcL ...    36   2.6    2
(AY551368) Campylopus pilifer isolate C137piUSA atpB-rbcL in...    36   2.7    2
(CE809936) tigr-gss-dog-17000317871906 Dog Library Canis lup...    42   2.8    2
(AY925205) Campylopus introflexus isolate C217 AtpB (atpB) g...    36   2.9    2
(BV354783) S231P699RE5.T0 BedlingtonTerrier Canis familiaris...    42   2.9    2
(AY894745) Campylopus pyriformis AtpB (atpB) gene, partial c...    36   2.9    2
(AY894744) Campylopus pseudobicolor AtpB (atpB) gene, partia...    36   2.9    2
(AY894743) Campylopus fragilis subsp. zollingerianus AtpB (a...    36   2.9    2
(AY894736) Campylopus fragilis subsp. fragiliformis AtpB (at...    36   2.9    2
(CF550048) AGENCOURT_15521873 NIH_ZGC_4 Danio rerio cDNA clo...    36   2.9    2
(AY894735) Campylopus sp. Mueller R284 AtpB (atpB) gene, par...    36   2.9    2
(AY894734) Campylopus pyriformis AtpB (atpB) gene, partial c...    36   2.9    2
(AY894741) Campylopus flexuosus AtpB (atpB) gene, partial cd...    36   2.9    2
(AE014838) Plasmodium falciparum 3D7 chromosome 11 section 3...    34   2.9    14
(AY925204) Campylopus brevirameus isolate C218 AtpB (atpB) g...    36   2.9    2
(AY894742) Campylopus comosus AtpB (atpB) gene, partial cds;...    36   2.9    2
(AY894738) Campylopus flexuosus var. incacorralis AtpB (atpB...    36   2.9    2
(AY925203) Campylopus pilifer isolate C122 AtpB (atpB) gene,...    36   2.9    2
(AY925202) Campylopus pilifer isolate C120 AtpB (atpB) gene,...    36   2.9    2
(ER573872) 1093015804612 Global-Ocean-Sampling_GS-36-01-01-2...    32   2.9    4
(ET945984) CHO_OF116xb05f1.ab1 CHO_OF Nicotiana tabacum geno...    38   3.0    2
(AM428908) Vitis vinifera contig VV78X147466.3, whole genome...    46   3.0    2
(CW558983) OA_ABa0080I24.f OA_ABa Oryza australiensis genomi...    42   3.0    2
(BV233284) S234P6250FH11.T0 EnglishShepherd Canis familiaris...    42   3.1    2
(BV396314) S243P6212FA10.T0 CaliforniaCoyote Canis latrans S...    42   3.1    2
(AL360354) Plasmodium vivax telomeric YAC clone, complete fi...    32   3.2    10
(AL844507) Plasmodium falciparum chromosome 8.                     32   3.2    15
(DY894332) CeleSEQ13875 Cunninghamella elegans pBluescript (...    44   3.3    2
(AC209587) Solanum lycopersicum DNA sequence from clone LE_H...    46   3.5    1
(AC208743) Populus trichocarpa clone JGIACSB1077-L15, comple...    46   3.5    1
(EU078589) Brachypterolus pulicarius clone bp_37 microsatell...    46   3.5    1
(AF238313) Dictyostelium discoideum developmental protein DG...    46   3.5    1
(AP001725) Homo sapiens genomic DNA, chromosome 21q, section...    46   3.5    1
(AP000689) Homo sapiens genomic DNA, chromosome 21q22.2, BAC...    46   3.5    1
(AL627310) Human DNA sequence from clone RP11-199P24 on chro...    46   3.5    1
(AL353588) Human DNA sequence from clone RP11-444E17 on chro...    46   3.5    1
(AC134043) Homo sapiens chromosome 5 clone RP11-175K6, compl...    46   3.5    1
(AC011376) Homo sapiens chromosome 5 clone CTB-11I22, comple...    46   3.5    1
(AC009310) Homo sapiens BAC clone RP11-302A6 from 2, complet...    46   3.5    1
(AB003151) Homo sapiens CBR, CBR3 genes for carbonyl reducta...    46   3.5    1
(AC134299) Homo sapiens chromosome 5 clone CTC-324O1, WORKIN...    46   3.5    1
(AC093688) Homo sapiens chromosome 2 clone RP11-723G21, *** ...    46   3.5    1
(AC037440) Homo sapiens chromosome 2 clone RP11-302P24 map 2...    46   3.5    1
(CU207280) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.5    1
(CR385045) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   3.5    1
(AL645770) Human DNA sequence *** SEQUENCING CANCELLED *** f...    46   3.5    1
(BX029003) Single read from an extremity of a full-length cD...    46   3.5    1
(FI259240) CccaBb053-B13JF CccABb Cajanus cajan genomic clon...    46   3.5    1
(ER615484) 1093016377536 Global-Ocean-Sampling_GS-36-01-01-2...    46   3.5    1
(EK299949) 1095462361274 Global-Ocean-Sampling_GS-31-01-01-1...    46   3.5    1
(EJ213652) 1092351020505 Global-Ocean-Sampling_GS-27-01-01-1...    46   3.5    1
(CT972158) Equus caballus GSS, BAC clone CH241-53C19, SP6 en...    46   3.5    1
(AU076334) Dictyostelium discoideum slug cDNA, clone SSA609.       46   3.5    1
(CR740374) RZPD Homo sapiens cDNA clone IMAGp998G043120 = IM...    46   3.5    1
(CJ450266) Macaca fascicularis mRNA, clone: QflA-15818, 5' e...    46   3.5    1
(CJ449811) Macaca fascicularis mRNA, clone: QflA-15343, 5' e...    46   3.5    1
(BJ327501) Dictyostelium discoideum cDNA clone:dda20n13, 5' ...    46   3.5    1
(BJ332620) Dictyostelium discoideum cDNA clone:dda39b23, 5' ...    38   3.5    3
(BH548167) BOHBV85TR BOHB Brassica oleracea genomic clone BO...    38   3.6    2
(CW565262) OA_ABa0089K08.f OA_ABa Oryza australiensis genomi...    42   3.7    2
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    32   3.7    9
(BJ419005) Dictyostelium discoideum cDNA clone:ddv34a21, 5' ...    40   3.8    2
(AL356288) Human DNA sequence from clone RP11-6E3 on chromos...    40   3.8    7
(AC162908) Mus musculus BAC clone RP24-296A15 from chromosom...    34   3.9    6
(D31785) Pichia canadensis mitochondrial genomic DNA, comple...    32   4.0    5
(EK496502) 1095505160825 Global-Ocean-Sampling_GS-32-01-01-1...    32   4.0    4
(AY159901) Dicranodontium denudatum isolate DdatpB atpB-rbcL...    32   4.0    3
(AM483738) Vitis vinifera contig VV78X063691.4, whole genome...    34   4.1    4
(AM434636) Vitis vinifera contig VV78X022558.16, whole genom...    38   4.2    3
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   4.4    11
(CT009602) PTB-121B21, complete sequence.                          36   4.4    6
(BJ417969) Dictyostelium discoideum cDNA clone:ddv31p01, 5' ...    34   4.8    3
(AX458530) Sequence 76 from Patent WO0246454.                      36   4.9    3
(AX347142) Sequence 2213 from Patent WO0200928.                    40   5.1    4
(AC160778) Bos taurus clone CH240-96J9, WORKING DRAFT SEQUEN...    40   5.3    4
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771...    34   5.5    7
(CU151842) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   5.5    5
(BJ337066) Dictyostelium discoideum cDNA clone:dda56j05, 5' ...    38   5.7    3
(EU597124) Artogeia melete mitochondrion, complete genome.         34   5.8    5
(CU695314) Brassica rapa subsp. pekinensis clone KBrH074C10,...    40   6.0    4
(BH960640) odh64e03.b1 B.oleracea002 Brassica oleracea genom...    36   6.0    3
(CT955952) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   6.2    7
(DX998191) CHORI103-52G21.TJ.1 CHORI103 Schistosoma mansoni ...    34   6.4    3
(AC177722) Strongylocentrotus purpuratus clone R3-1011A4, WO...    36   6.4    6
(AC155715) Mus musculus 10 BAC RP24-118H2 (Roswell Park Canc...    34   6.4    2
(AC179992) Strongylocentrotus purpuratus clone R3-3036I20, W...    34   6.5    2
(AC178048) Strongylocentrotus purpuratus clone R3-1117F11, W...    34   6.5    2
(AC216424) Solanum lycopersicum chromosome 7 clone C07HBa017...    32   6.8    2
(EL495602) E11_PFLAB1-L-PLATE3B.AB1 Blood stage Plasmodium f...    32   6.8    4
(BJ413883) Dictyostelium discoideum cDNA clone:ddv17d09, 5' ...    38   7.0    2
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1...    32   7.2    13
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    36   7.4    6
(AE001421) Plasmodium falciparum 3D7 chromosome 2 section 58...    30   7.9    6
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    30   8.1    9
(AB242844) Drosophila mauritiana mitochondrial DNA, A+T-rich...    32   8.1    2
(AM437078) Vitis vinifera contig VV78X177337.5, whole genome...    32   8.2    2
(AF268053) Candidatus Carsonella ruddii natural-host Tainary...    34   8.2    2
(AP009021) Bombyx mori genomic DNA, chromosome 22, BAC clone...    42   8.2    6
(BJ389580) Dictyostelium discoideum cDNA clone:dds19d11, 5' ...    36   8.2    2
(CJ454040) Macaca fascicularis mRNA, clone: QflA-19763, 5' e...    34   8.3    3
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    36   8.4    7
(AM448902) Vitis vinifera contig VV78X060238.13, whole genom...    36   8.4    3
(AB028634) Flammulina velutipes mitochondrial gene for RNA p...    38   8.6    3
(AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1...    36   8.6    10
(CJ435998) Macaca fascicularis mRNA, clone: QccE-13069, 5' e...    32   8.7    2
(EB199460) PEG001-C-008977-301 Non-Normalized Pedal-Pleural ...    34   8.8    2
(CP000963) Clostridium botulinum A3 str. Loch Maree plasmid ...    36   9.0    9
(FH035368) CHO_OF3277xj09f1.ab1 CHO_OF3 Nicotiana tabacum ge...    36   9.0    3
(AL008970) Plasmodium falciparum MAL3P4.                           32   9.1    10
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3...    38   9.1    10
(CU915252) Brassica rapa subsp. pekinensis clone KBrH027B04,...    40   9.2    6
(AL034559) Plasmodium falciparum MAL3P7.                           42   9.3    10
(EI490682) PV_GBa0106L13.f PV_GBa Phaseolus vulgaris genomic...    40   9.4    2
(AE017243) Mycoplasma hyopneumoniae J, complete genome.            36   9.5    15
(AY551364) Campylopus introflexus isolate C142CiPARA atpB-rb...    36   9.6    2
(AY576441) Campylopus introflexus isolate C142 atpB-rbcL int...    36   9.6    2
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5...    32   9.9    13
(AC145835) Homo sapiens chromosome 19 clone RP11-155P5, WORK...    42   10.0   2

>(BJ415438) Dictyostelium discoideum cDNA clone:ddv22g16, 5' end,
           single read.
          Length = 586

 Score =  587 bits (296), Expect(2) = 0.0
 Identities = 296/296 (100%)
 Strand = Plus / Plus


Query: 195 cactgttggcctactggaatgtcaacagtagttttacatgatataagtacatcaaaatca 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cactgttggcctactggaatgtcaacagtagttttacatgatataagtacatcaaaatca 60


Query: 255 tatataccatttatacattatgtatatgaaggtgaagaaataccagatagtttatatgta 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tatataccatttatacattatgtatatgaaggtgaagaaataccagatagtttatatgta 120


Query: 315 gaatctgaaccaatcaatagtgaatcatcaaagaataataataatagagtttgtattgcc 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaatctgaaccaatcaatagtgaatcatcaaagaataataataatagagtttgtattgcc 180


Query: 375 ccattagagatttatttaaataaaaatggtgatattgaaaatataatatcattaagagat 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccattagagatttatttaaataaaaatggtgatattgaaaatataatatcattaagagat 240


Query: 435 gattcaacaattactgaaattacaatagatcatggtaatgattcacccaatggtgg 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gattcaacaattactgaaattacaatagatcatggtaatgattcacccaatggtgg 296

 Score =  402 bits (203), Expect(2) = 0.0
 Identities = 203/203 (100%)
 Strand = Plus / Plus


Query: 515 caatggatcagtactacatattcatggtatattcccaaaattaaacaatgtagaaataaa 574
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatggatcagtactacatattcatggtatattcccaaaattaaacaatgtagaaataaa 380


Query: 575 agaaaatagtttaagtattagtaattttgaaatttcaaaaccaacaatagatttaataca 634
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaaatagtttaagtattagtaattttgaaatttcaaaaccaacaatagatttaataca 440


Query: 635 agaatataatgatagaaacaatttaattaaaactatgctactagaggttgaaaaagaaaa 694
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaatataatgatagaaacaatttaattaaaactatgctactagaggttgaaaaagaaaa 500


Query: 695 ttattttagtatctctaaaatta 717
           |||||||||||||||||||||||
Sbjct: 501 ttattttagtatctctaaaatta 523

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,170,072,262
Number of extensions: 88102231
Number of successful extensions: 10968691
Number of sequences better than 10.0: 276
Length of query: 1374
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1350
Effective length of database: 96,409,374,237
Effective search space: 130152655219950
Effective search space used: 130152655219950
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.17
Homology vs Protein 
Query= Contig-U15584-1 (Contig-U15584-1Q) /CSM_Contig/Contig-U15584-1Q.Seq.d
         (1374 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ006933_17(FJ006933|pid:none) Brachyspira intermedia strain HB6...    35   4.9
AX647827_1(AX647827|pid:none) Sequence 2019 from Patent EP1270724.     35   4.9

>FJ006933_17(FJ006933|pid:none) Brachyspira intermedia strain HB60
           VSH1 region genomic sequence.
          Length = 634

 Score = 35.4 bits (80), Expect = 4.9
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = +3

Query: 213 MSTVVLHDISTSKSYIPFIHYVYEGEEIPDSLYVESEPINSESSKNNNNRVCIAPLEI-- 386
           +S  +++D    K YI FI Y+Y   E     YV       ES+KNNN+   I    I
Sbjct: 461 LSGNIINDDIFEKFYIIFIRYIYMNYENKIMDYV-------ESNKNNNSYFKILYDRINN 513

Query: 387 -YLNKNGDIENIISLRD 434
            Y+ +  DI+ I ++RD
Sbjct: 514 SYIKRKNDIKKIFNIRD 530

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 915,689,763
Number of extensions: 12966092
Number of successful extensions: 36163
Number of sequences better than 10.0: 2
Number of HSP's gapped: 35962
Number of HSP's successfully gapped: 2
Length of query: 458
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 326
Effective length of database: 623,955,076
Effective search space: 203409354776
Effective search space used: 203409354776
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.91  gvh: 0.38  alm: 0.47  top: 0.13  tms: 0.00  mit: 0.37  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: extracellular, including cell wall
	 12.0 %: vacuolar
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U15584-1 is cyt
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 1
AF (FL, S) 2
SL (DIR, L) 3
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0