Contig-U15581-1 |
Contig ID |
Contig-U15581-1 |
Contig update |
2004. 6.11 |
Contig sequence |
|
Gap |
gap included |
Contig length |
2652 |
Chromosome number (1..6, M) |
1 |
Chromosome length |
4919822 |
Start point |
3516320 |
End point |
3518090 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
49 |
Number of EST |
88 |
Link to clone list |
U15581 |
List of clone(s) |
est1=AFG817F,1,592 est2=AFB204F,228,774 est3=SFE438F,228,485 est4=SFI150F,229,682 est5=VFL377F,229,958 est6=AFH114F,232,731 est7=AFF134F,246,868 est8=AFF257F,246,847 est9=AFF620F,246,771 est10=AFK625F,246,836 est11=CFB176F,246,725 est12=SFI708F,246,838 est13=VFA711F,246,756 est14=VFB162F,246,775 est15=VFD341F,246,921 est16=VFF214F,246,815 est17=VFI321F,246,837 est18=VFK465F,246,772 est19=AFE733F,247,850 est20=CFC487F,247,847 est21=VFB683F,247,808 est22=AFB230F,249,919 est23=AFO711F,249,881 est24=AHJ757F,249,870 est25=CFE610F,249,656 est26=CHC828F,249,833 est27=SFE514F,249,902 est28=VFE372F,249,835 est29=VFJ139F,249,774 est30=VFJ817F,249,861 est31=VFN365F,249,902 est32=AFA828F,252,897 est33=AFJ504F,252,920 est34=CFC678F,252,922 est35=AFD752F,256,758 est36=VFA239F,256,810 est37=VFJ717F,256,848 est38=AFB815F,257,921 est39=VFA678F,257,737 est40=VFJ270F,257,900 est41=CFJ145F,268,770 est42=AFG157F,278,921 est43=CHC776F,309,654 est44=SFL105F,390,659 est45=AFF359F,753,1347 est46=VFA540F,755,1371 est47=VFA239Z,1280,2027 est48=AFO711Z,1281,1974 est49=VFI321Z,1281,2019 est50=VFA711Z,1282,1977 est51=VFJ817Z,1282,1987 est52=AFE733Z,1283,1984 est53=AFG817Z,1283,2024 est54=AFK625Z,1283,1974 est55=AFF620Z,1284,1954 est56=VFK465Z,1292,1986 est57=AFB815Z,1305,1984 est58=AFF257Z,1309,2015 est59=SLA394F,1309,1525 est60=CHC828Z,1310,2015 est61=SFI150Z,1310,1975 est62=AFG157Z,1312,2016 est63=VFJ139Z,1312,1953 est64=VFN365Z,1313,2019 est65=SFI708Z,1336,2018 est66=VFE372Z,1338,2005 est67=CFE610Z,1341,1975 est68=AFF134Z,1351,1920 est69=VFB162Z,1356,1900 est70=SFE438Z,1364,1986 est71=VFL377Z,1365,1987 est72=VFF214Z,1367,2019 est73=VFJ717Z,1368,2027 est74=VFA678Z,1371,2027 est75=AFH114Z,1390,1983 est76=AFA828Z,1392,2016 est77=AHJ757Z,1400,1777 est78=CFC487Z,1443,2016 est79=AFE833Z,1494,1973 est80=AFF359H,1519,2518 est81=SLA394Z,1522,2029 est82=AFD752Z,1529,1974 est83=VFB683Z,1645,1839 est84=VFA540Z,1654,1927 est85=SFL105Z,1667,1776 est86=AFF359Z,2519,2652 est87=SFA220Z,2519,2599 est88=SFE514Z,2523,2652
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
|
dna update |
2009. 2. 1 |
Homology vs DNA |
Query= Contig-U15581-1 (Contig-U15581-1Q) /CSM_Contig/Contig-U15581-1Q.Seq.d (2662 letters)
Database: ddbj_B 98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ346691) Dictyostelium discoideum cDNA clone:dda24p14, 3' ... 1411 0.0 1 (BJ431947) Dictyostelium discoideum cDNA clone:ddv17j05, 3' ... 1402 0.0 2 (BJ342324) Dictyostelium discoideum cDNA clone:dda13a15, 3' ... 1378 0.0 1 (BJ378116) Dictyostelium discoideum cDNA clone:ddc27h08, 3' ... 1368 0.0 1 (BJ346165) Dictyostelium discoideum cDNA clone:dda30f03, 3' ... 1368 0.0 1 (BJ340063) Dictyostelium discoideum cDNA clone:dda11a16, 3' ... 1344 0.0 2 (BJ339749) Dictyostelium discoideum cDNA clone:dda10b09, 3' ... 1336 0.0 2 (BJ343166) Dictyostelium discoideum cDNA clone:dda22a08, 3' ... 1324 0.0 2 (BJ403072) Dictyostelium discoideum cDNA clone:dds18p01, 3' ... 1302 0.0 1 (BJ435556) Dictyostelium discoideum cDNA clone:ddv27b17, 3' ... 1279 0.0 2 (BJ428213) Dictyostelium discoideum cDNA clone:ddv11k04, 3' ... 1273 0.0 1 (BJ340864) Dictyostelium discoideum cDNA clone:dda4n04, 3' e... 1273 0.0 2 (BJ402616) Dictyostelium discoideum cDNA clone:dds17c13, 3' ... 1265 0.0 2 (BJ433341) Dictyostelium discoideum cDNA clone:ddv21b18, 3' ... 1263 0.0 3 (BJ432679) Dictyostelium discoideum cDNA clone:ddv19m09, 3' ... 1261 0.0 1 (BJ432837) Dictyostelium discoideum cDNA clone:ddv20b06, 3' ... 1239 0.0 4 (BJ429009) Dictyostelium discoideum cDNA clone:ddv2f03, 3' e... 1239 0.0 4 (BJ342442) Dictyostelium discoideum cDNA clone:dda14b06, 3' ... 1223 0.0 2 (BJ371856) Dictyostelium discoideum cDNA clone:ddc10c04, 3' ... 1221 0.0 2 (BJ340489) Dictyostelium discoideum cDNA clone:dda2h08, 3' e... 1219 0.0 1 (BJ431054) Dictyostelium discoideum cDNA clone:ddv9p17, 3' e... 1207 0.0 3 (BJ340199) Dictyostelium discoideum cDNA clone:dda12g06, 3' ... 1189 0.0 3 (BJ410947) Dictyostelium discoideum cDNA clone:ddv2o09, 5' e... 1174 0.0 2 (BJ323647) Dictyostelium discoideum cDNA clone:dda11f15, 5' ... 1172 0.0 1 (BJ400243) Dictyostelium discoideum cDNA clone:dds9l10, 3' e... 1164 0.0 2 (BJ434092) Dictyostelium discoideum cDNA clone:ddv23j19, 3' ... 1160 0.0 2 (BJ428834) Dictyostelium discoideum cDNA clone:ddv1m10, 3' e... 1156 0.0 3 (BJ374029) Dictyostelium discoideum cDNA clone:ddc5n22, 3' e... 1118 0.0 1 (BJ340004) Dictyostelium discoideum cDNA clone:dda11c09, 3' ... 1118 0.0 1 (BJ429265) Dictyostelium discoideum cDNA clone:ddv2k20, 3' e... 1106 0.0 2 (BJ429479) Dictyostelium discoideum cDNA clone:ddv3k15, 3' e... 1078 0.0 1 (BJ432836) Dictyostelium discoideum cDNA clone:ddv20b05, 3' ... 1061 0.0 3 (BJ342853) Dictyostelium discoideum cDNA clone:dda15k03, 3' ... 1023 0.0 3 (BJ325248) Dictyostelium discoideum cDNA clone:dda13a15, 5' ... 779 0.0 3 (BJ416842) Dictyostelium discoideum cDNA clone:ddv27b17, 5' ... 460 0.0 4 (BJ415825) Dictyostelium discoideum cDNA clone:ddv23j19, 5' ... 460 0.0 3 (BJ414567) Dictyostelium discoideum cDNA clone:ddv19k18, 5' ... 460 0.0 4 (BJ412182) Dictyostelium discoideum cDNA clone:ddv7b11, 5' e... 460 0.0 4 (BJ360592) Dictyostelium discoideum cDNA clone:ddc6k20, 5' e... 460 0.0 4 (BJ327336) Dictyostelium discoideum cDNA clone:dda20g01, 5' ... 460 0.0 4 (BJ326008) Dictyostelium discoideum cDNA clone:dda3k08, 5' e... 460 0.0 4 (BJ325799) Dictyostelium discoideum cDNA clone:dda2h08, 5' e... 460 0.0 4 (BJ323979) Dictyostelium discoideum cDNA clone:dda4n04, 5' e... 460 0.0 4 (BJ386694) Dictyostelium discoideum cDNA clone:dds10k03, 5' ... 452 0.0 4 (BJ328911) Dictyostelium discoideum cDNA clone:dda30f03, 5' ... 460 0.0 4 (BJ325353) Dictyostelium discoideum cDNA clone:dda14b06, 5' ... 624 0.0 2 (BJ323581) Dictyostelium discoideum cDNA clone:dda11c09, 5' ... 452 0.0 4 (BJ335507) Dictyostelium discoideum cDNA clone:dda50b15, 5' ... 460 0.0 4 (BJ414655) Dictyostelium discoideum cDNA clone:ddv20b06, 5' ... 460 0.0 4 (BJ323633) Dictyostelium discoideum cDNA clone:dda11a16, 5' ... 460 0.0 4 (BJ360405) Dictyostelium discoideum cDNA clone:ddc5n22, 5' e... 460 0.0 4 (BJ323365) Dictyostelium discoideum cDNA clone:dda10b09, 5' ... 460 0.0 4 (BJ413836) Dictyostelium discoideum cDNA clone:ddv17j05, 5' ... 460 0.0 4 (BJ327918) Dictyostelium discoideum cDNA clone:dda22a08, 5' ... 460 0.0 4 (BJ412745) Dictyostelium discoideum cDNA clone:ddv9p17, 5' e... 460 0.0 4 (BJ363569) Dictyostelium discoideum cDNA clone:ddc27h08, 5' ... 460 0.0 4 (BJ389285) Dictyostelium discoideum cDNA clone:dds18p01, 5' ... 460 0.0 4 (BJ414654) Dictyostelium discoideum cDNA clone:ddv20b05, 5' ... 460 0.0 4 (BJ410081) Dictyostelium discoideum cDNA clone:ddv11k04, 5' ... 460 0.0 4 (BJ411532) Dictyostelium discoideum cDNA clone:ddv4e22, 5' e... 460 0.0 4 (BJ410667) Dictyostelium discoideum cDNA clone:ddv1m10, 5' e... 460 0.0 4 (BJ329702) Dictyostelium discoideum cDNA clone:dda26a01, 5' ... 460 0.0 4 (BJ339750) Dictyostelium discoideum cDNA clone:dda10b10, 3' ... 886 0.0 2 (BJ329363) Dictyostelium discoideum cDNA clone:dda24p14, 5' ... 460 0.0 4 (BJ414510) Dictyostelium discoideum cDNA clone:ddv19m09, 5' ... 460 0.0 4 (BJ415125) Dictyostelium discoideum cDNA clone:ddv21b18, 5' ... 460 0.0 4 (BJ323751) Dictyostelium discoideum cDNA clone:dda12g06, 5' ... 460 0.0 4 (BJ411256) Dictyostelium discoideum cDNA clone:ddv3k15, 5' e... 460 0.0 4 (BJ325936) Dictyostelium discoideum cDNA clone:dda3g02, 5' e... 452 0.0 4 (AU040092) Dictyostelium discoideum slug cDNA, clone SLA394. 817 0.0 3 (BJ410839) Dictyostelium discoideum cDNA clone:ddv2f03, 5' e... 771 0.0 2 (BJ324894) Dictyostelium discoideum cDNA clone:dda8h13, 5' e... 460 0.0 3 (BJ341886) Dictyostelium discoideum cDNA clone:dda8h13, 3' e... 779 0.0 3 (BJ361923) Dictyostelium discoideum cDNA clone:ddc19i11, 5' ... 454 0.0 4 (BJ326274) Dictyostelium discoideum cDNA clone:dda15k03, 5' ... 460 0.0 4 (BJ360018) Dictyostelium discoideum cDNA clone:ddc3g19, 5' e... 460 0.0 4 (BJ411072) Dictyostelium discoideum cDNA clone:ddv2k20, 5' e... 381 0.0 5 (BJ353520) Dictyostelium discoideum cDNA clone:dda50b15, 3' ... 692 0.0 1 (BJ358532) Dictyostelium discoideum cDNA clone:ddc10c04, 5' ... 452 0.0 3 (BJ389098) Dictyostelium discoideum cDNA clone:dds17c13, 5' ... 325 0.0 5 (BJ429129) Dictyostelium discoideum cDNA clone:ddv2o09, 3' e... 537 e-148 1 (BJ363670) Dictyostelium discoideum cDNA clone:ddc27h19, 5' ... 430 e-147 2 (BJ365960) Dictyostelium discoideum cDNA clone:ddc37o04, 5' ... 498 e-136 1 (BJ327787) Dictyostelium discoideum cDNA clone:dda21c22, 5' ... 498 e-136 1 (BJ396357) Dictyostelium discoideum cDNA clone:dds42k18, 5' ... 496 e-135 1 (BJ416614) Dictyostelium discoideum cDNA clone:ddv26p24, 5' ... 494 e-135 1 (BJ415706) Dictyostelium discoideum cDNA clone:ddv23o10, 5' ... 492 e-134 1 (BJ413129) Dictyostelium discoideum cDNA clone:ddv14d12, 5' ... 492 e-134 1 (BJ412437) Dictyostelium discoideum cDNA clone:ddv8p09, 5' e... 488 e-133 1 (BJ424476) Dictyostelium discoideum cDNA clone:ddv52f14, 5' ... 454 e-123 1 (BJ426476) Dictyostelium discoideum cDNA clone:ddv59k05, 5' ... 446 e-120 1 (BJ414068) Dictyostelium discoideum cDNA clone:ddv17p22, 5' ... 446 e-120 1 (BJ390619) Dictyostelium discoideum cDNA clone:dds23i01, 5' ... 349 e-116 2 (AU060135) Dictyostelium discoideum slug cDNA, clone SLA394. 430 e-115 1 (BJ388407) Dictyostelium discoideum cDNA clone:dds9l10, 5' e... 232 1e-88 2 (BJ425973) Dictyostelium discoideum cDNA clone:ddv57o13, 5' ... 309 3e-79 1 (BJ431471) Dictyostelium discoideum cDNA clone:ddv14d12, 3' ... 214 1e-50 1 (BJ429764) Dictyostelium discoideum cDNA clone:ddv4e22, 3' e... 186 6e-49 2 (BJ397911) Dictyostelium discoideum cDNA clone:dds10k03, 3' ... 178 7e-40 1 (BJ340082) Dictyostelium discoideum cDNA clone:dda11f15, 3' ... 178 7e-40 1 (BJ401393) Dictyostelium discoideum cDNA clone:dds23i01, 3' ... 157 3e-33 1 (BJ398586) Dictyostelium discoideum cDNA clone:dds1g06, 3' e... 74 3e-08 1 (AU037574) Dictyostelium discoideum slug cDNA, clone SSD806. 54 3e-06 2 (AZ534715) ENTCD30TF Entamoeba histolytica Sheared DNA Entam... 38 3e-06 4 (DD380311) A polynucleotide for detecting heavy metal respon... 66 7e-06 1 (AL132876) Caenorhabditis elegans YAC Y105E8A. 66 7e-06 1 (AL022594) Caenorhabditis elegans DNA *** SEQUENCING IN PROG... 66 7e-06 1 (FC638310) CAXU3126.fwd CAXU Lottia gigantea from female gon... 42 1e-04 2 (FC689851) CAXX20911.fwd CAXX Lottia gigantea from male gona... 42 1e-04 2 (FC815680) Sr_pAMT7_03n12_T7 S. ratti mixed stage pAMP Stron... 48 2e-04 3 (FC815780) Sr_pAMT7_04c05_T7 S. ratti mixed stage pAMP Stron... 48 0.002 2 (BI323882) kt46b09.y3 Strongyloides ratti L1 pAMP1 v3 Chiape... 48 0.002 2 (EC649497) BHE00008048 Blastocystis hominis Regular, non-nor... 34 0.003 5 (CO649843) ccp07_F01_11 Chondrus crispus protoplasts Zap Exp... 36 0.006 4 (BM879655) kt98c03.y1 Strongyloides ratti PA female naive pA... 34 0.021 4 (CQ343439) Sequence 17533 from Patent WO0157275. 28 0.021 6 (CQ306317) Sequence 17422 from Patent WO0186003. 28 0.021 6 (CQ269292) Sequence 17553 from Patent WO0157277. 28 0.021 6 (CQ231122) Sequence 17961 from Patent WO0157273. 28 0.021 6 (CQ207658) Sequence 9935 from Patent WO0157271. 28 0.021 6 (CQ183234) Sequence 14630 from Patent WO0157274. 28 0.021 6 (CQ147885) Sequence 17907 from Patent WO0157276. 28 0.021 6 (CQ109248) Sequence 18107 from Patent WO0157272. 28 0.021 6 (CQ078258) Sequence 14058 from Patent WO0157278. 28 0.021 6 (CQ058870) Sequence 9690 from Patent WO0157270. 28 0.021 6 (EE283195) SAAH-aab25a07.g1 Agen 0058 Schmidtea mediterranea... 46 0.054 2 (EC617105) SAAH-aaa32f06.g1 Agen 0058 Schmidtea mediterranea... 46 0.061 2 (EG354126) SAAH-aac74e09.g1 Agen 0058 Schmidtea mediterranea... 46 0.064 2 (EG354241) SAAH-aac75f09.g1 Agen 0058 Schmidtea mediterranea... 46 0.065 2 (EC616493) SAAH-aaa18d07.g1 Agen 0058 Schmidtea mediterranea... 46 0.065 2 (EE668230) SAAH-aac03c02.g1 Agen 0058 Schmidtea mediterranea... 46 0.067 2 (DU406164) 1098472001705 CHORI-243 Ovis aries genomic clone ... 44 0.069 2 (EE673252) SAAH-aab83c05.g1 Agen 0058 Schmidtea mediterranea... 46 0.070 2 (EE672548) SAAH-aab76b06.g1 Agen 0058 Schmidtea mediterranea... 46 0.070 2 (AC220230) Bos taurus clone CH240-366P4, WORKING DRAFT SEQUE... 48 0.072 4 (BJ438194) Dictyostelium discoideum cDNA clone:ddv36l17, 3' ... 38 0.082 3 (BJ442485) Dictyostelium discoideum cDNA clone:ddv50c06, 3' ... 46 0.089 3 (BJ383771) Dictyostelium discoideum cDNA clone:ddc47m06, 3' ... 38 0.092 3 (EA117032) Sequence 1216 from patent US 7205146. 38 0.15 2 (EY357959) CAWZ5530.fwd CAWZ Helobdella robusta Primary Late... 34 0.24 4 (DU273528) 1098421215040 CHORI-243 Ovis aries genomic clone ... 42 0.25 2 (EL370742) CCES7756.b1_G19.ab1 CCE(LMS) endive Cichorium end... 38 0.26 2 (AM531843) Paracentrotus lividus EST, clone MPMGp1171E04100Q... 42 0.28 2 (AM598578) Paracentrotus lividus EST, clone MPMGp1174C2267Q,... 42 0.28 2 (DU206535) 1098574186844 CHORI-243 Ovis aries genomic clone ... 42 0.29 2 (AL008970) Plasmodium falciparum MAL3P4. 34 0.43 11 (ED814649) ML__Ba0094P20r ML__Ba Mimulus lewisii genomic, ge... 38 0.43 2 (FH338252) CHO_OF4601xm08f1.ab1 CHO_OF4 Nicotiana tabacum ge... 50 0.44 1 (ER583938) 1093015856482 Global-Ocean-Sampling_GS-36-01-01-2... 32 0.55 4 (CQ330708) Sequence 4802 from Patent WO0157275. 28 0.61 6 (CQ293806) Sequence 4911 from Patent WO0186003. 28 0.61 6 (CQ256718) Sequence 4979 from Patent WO0157277. 28 0.61 6 (CQ218124) Sequence 4963 from Patent WO0157273. 28 0.61 6 (CQ202546) Sequence 4823 from Patent WO0157271. 28 0.61 6 (CQ173349) Sequence 4745 from Patent WO0157274. 28 0.61 6 (CQ134868) Sequence 4890 from Patent WO0157276. 28 0.61 6 (CQ096119) Sequence 4978 from Patent WO0157272. 28 0.61 6 (CQ069070) Sequence 4870 from Patent WO0157278. 28 0.61 6 (CQ053885) Sequence 4705 from Patent WO0157270. 28 0.61 6 (EY313085) CAWX24758.fwd CAWX Helobdella robusta Primary Ear... 34 0.74 4 (CU492823) Theobroma cacao, mRNA sequence (KZ0AAD10YN10FM1). 42 0.75 2 (CU478728) Theobroma cacao, mRNA sequence (KZ0AAL11YG02FM1). 42 0.75 2 (CR382126) Kluyveromyces lactis strain NRRL Y-1140 chromosom... 36 0.77 2 (AC160143) Pan troglodytes BAC clone CH251-565M18 from chrom... 38 0.90 2 (AC010536) Homo sapiens chromosome 16 clone RP11-278A23, com... 38 0.90 2 (AP001933) Homo sapiens genomic DNA, chromosome 18q23 clone:... 36 0.91 2 (AC096709) Homo sapiens chromosome 18, clone RP11-707P24, co... 36 0.91 2 (AL139384) Human DNA sequence from clone RP11-88E10 on chrom... 38 0.91 2 (AC100863) Homo sapiens chromosome 18, clone RP11-751H17, co... 36 0.91 2 (AC092720) Homo sapiens chromosome 16 clone RP11-482M8, comp... 38 0.92 2 (AF429315) Homo sapiens junctophilin 3 (JPH3) gene, partial ... 38 0.93 2 (AY875213) Homalodisca coagulata mitochondrion, complete gen... 36 0.98 5 (CS789487) Sequence 743 from Patent WO2005031001. 36 0.99 2 (CL097420) ISB1-29M14_Sp6.1 ISB1 Xenopus (Silurana) tropical... 32 1.0 4 (ER927060) MUGQ_CH252P287L18Sp6_CP423_069 CHORI-252 Vervet M... 42 1.0 2 (CZ533033) SRAA-aac82h05.g1 Strongyloides ratti whole genome... 38 1.0 2 (CZ534188) SRAA-aac89g06.b1 Strongyloides ratti whole genome... 38 1.1 2 (EV160153) 0084015 Brassica napus Bud library Brassica napus... 42 1.1 3 (EA341960) Sequence 14452 from patent US 7306913. 32 1.1 3 (CX961502) JGI_CAAO11439.rev NIH_XGC_tropTe5 Xenopus (Silura... 32 1.1 3 (AL425040) clone BA0AB002H10 of library BA0AB from strain CL... 36 1.2 2 (AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 38 1.2 14 (CN932396) 000429AFBC008101HT (AFBC) Royal Gala pre-opened f... 46 1.3 2 (AC185811) Bos taurus clone RP42-202N17, WORKING DRAFT SEQUE... 36 1.4 4 (AC152151) Dasypus novemcinctus clone VMRC5-422B14, WORKING ... 38 1.5 5 (AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont... 30 1.7 15 (AC120383) Mus musculus chromosome 12, clone RP24-273A7, com... 48 1.7 1 (AC102771) Mus musculus chromosome 1, clone RP23-175K23, com... 48 1.7 1 (AC148366) Callithrix jacchus clone CH259-276C6, WORKING DRA... 48 1.7 1 (AC132000) Mus musculus clone RP24-262C22, LOW-PASS SEQUENCE... 48 1.7 1 (AC220205) Bos taurus clone CH240-366C17, WORKING DRAFT SEQU... 48 1.7 1 (CC470465) CH240_144K14.TJ CHORI-240 Bos taurus genomic clon... 48 1.7 1 (DN846443) KECB28-285.g-T7 NVH bovine early embryo cDNA libr... 48 1.7 1 (CN893337) 010614AAXA007561HT (AAXA) Royal Gala 126 DAFB fru... 46 1.7 2 (AC173151) Bos taurus clone CH240-528B1, WORKING DRAFT SEQUE... 36 1.8 10 (AP008120) Lotus japonicus genomic DNA, chromosome 5, clone:... 38 1.9 9 (AC169428) Bos taurus clone CH240-208F5, WORKING DRAFT SEQUE... 40 2.0 8 (FD989772) RR4H347TF RR4(PB) Raphanus raphanistrum subsp. la... 36 2.0 4 (EJ295010) 1095388030531 Global-Ocean-Sampling_GS-27-01-01-1... 32 2.1 4 (BB939390) Trifolium pratense cDNA clone:RCC12802. 32 2.3 3 (CN891069) 010513AAXA002245HT (AAXA) Royal Gala 126 DAFB fru... 46 2.4 2 (AC232863) Solanum lycopersicum chromosome 6 clone C06SLm000... 36 2.4 9 (CN940960) 010914AVBC012044PG (AVBC) Royal Gala young shoot ... 46 2.4 2 (CN870561) 001204AAOA007827HT (AAOA) Royal Gala phloem Malus... 46 2.4 2 (AM457473) Vitis vinifera contig VV78X112028.14, whole genom... 38 2.5 6 (CN892212) 010603AAXA004838HT (AAXA) Royal Gala 126 DAFB fru... 46 2.7 2 (CZ420173) 1015876 RP42 Bos taurus genomic clone RP42-54J04,... 34 2.8 3 (CN892342) 010603AAXA005216HT (AAXA) Royal Gala 126 DAFB fru... 46 2.8 2 (CN941508) 010918AVBC036087PG (AVBC) Royal Gala young shoot ... 46 2.9 2 (AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 34 3.0 16 (AC159990) Bos taurus clone CH240-80L23, WORKING DRAFT SEQUE... 36 3.0 5 (AC221474) Bos taurus clone CH240-410D14, WORKING DRAFT SEQU... 38 3.1 9 (CN892338) 010603AAXA005211HT (AAXA) Royal Gala 126 DAFB fru... 46 3.2 2 (CN891806) 010602AAXA003610HT (AAXA) Royal Gala 126 DAFB fru... 46 3.2 2 (FF485170) G708P5103RE6.T0 Acorn worm normalized gastrula pE... 36 3.2 2 (BM166146) EST568669 PyBS Plasmodium yoelii yoelii cDNA clon... 36 3.2 3 (FF478727) G613P6203RH11.T0 Acorn worm blastula/gastrula pCM... 36 3.3 2 (AC114547) Mus musculus chromosome 8, clone RP24-68M15, comp... 36 3.3 2 (AC178376) Strongylocentrotus purpuratus clone R3-3107E2, WO... 36 3.3 2 (AC211791) Macaca mulatta BAC CH250-482K9 (Children's Hospi... 32 3.3 2 (FF468655) G613P6021RG6.T0 Acorn worm blastula/gastrula pCMV... 36 3.4 2 (AC179746) Strongylocentrotus purpuratus clone R3-1018F16, W... 36 3.4 2 (FF468668) G613P6021RH9.T0 Acorn worm blastula/gastrula pCMV... 36 3.4 2 (AC178567) Strongylocentrotus purpuratus clone R3-3025P13, W... 36 3.4 2 (CZ405678) 1001381 RP42 Bos taurus genomic clone RP42-163O02... 34 3.5 3 (AC180573) Strongylocentrotus purpuratus clone R3-3095M18, W... 36 3.5 2 (FE755426) CAYF4362.g3 CAYF Petrolisthes cinctipes heart, wh... 32 3.5 3 (FE755425) CAYF4362.b3 CAYF Petrolisthes cinctipes heart, wh... 32 3.5 3 (FE755324) CAYF4291.g3 CAYF Petrolisthes cinctipes heart, wh... 32 3.5 3 (FE755323) CAYF4291.b3 CAYF Petrolisthes cinctipes heart, wh... 32 3.5 3 (CC574725) CH240_452M23.T7 CHORI-240 Bos taurus genomic clon... 34 3.6 3 (EK273218) 1095462266450 Global-Ocean-Sampling_GS-31-01-01-1... 32 3.6 4 (CZ422703) 1018406 RP42 Bos taurus genomic clone RP42-43K17,... 34 3.7 3 (CL124442) ISB1-85H2_Sp6.1 ISB1 Xenopus (Silurana) tropicali... 32 3.7 4 (DU219176) 1098553709230 CHORI-243 Ovis aries genomic clone ... 38 3.7 2 (FC764470) CBBN14585.fwd CBBN Lottia gigantea 3,4,5,6.5d Lar... 32 3.9 3 (AC173000) Bos taurus clone CH240-525N10, WORKING DRAFT SEQU... 36 3.9 5 (EK369692) 1095469411698 Global-Ocean-Sampling_GS-31-01-01-1... 32 3.9 4 (FC760050) CBBN11832.fwd CBBN Lottia gigantea 3,4,5,6.5d Lar... 32 4.2 3 (DU371299) 1098268233743 CHORI-243 Ovis aries genomic clone ... 34 4.2 3 (DU376099) 1098312079652 CHORI-243 Ovis aries genomic clone ... 34 4.4 3 (CR570427) Xenopus tropicalis EST, clone THdA020p16 5'. 32 4.4 3 (EY388516) CAXA7344.fwd CAXA Helobdella robusta Subtracted L... 34 4.4 2 (FF741758) XABT53230.fwd Gateway compatible cien cDNA librar... 32 4.5 2 (FF724866) XABT40618.fwd Gateway compatible cien cDNA librar... 32 4.5 2 (FF800523) XABT93086.fwd Gateway compatible cien cDNA librar... 32 4.5 2 (EY388515) CAXA7344.rev CAXA Helobdella robusta Subtracted L... 34 4.5 2 (FK175810) XABT195938.b1 Gateway compatible cien cDNA librar... 32 4.5 2 (FF730087) XABT44947.fwd Gateway compatible cien cDNA librar... 32 4.5 2 (BY755938) Mus musculus 1 cell embryo 1 cell cDNA, RIKEN ful... 36 4.5 2 (FK043455) XABT97052.b1 Gateway compatible cien cDNA library... 32 4.5 2 (CL140870) ISB1-118B8_Sp6.1 ISB1 Xenopus (Silurana) tropical... 32 4.5 3 (DU381697) 1098313043345 CHORI-243 Ovis aries genomic clone ... 34 4.5 3 (CU513253) Theobroma cacao, mRNA sequence (KZ0ABF10YG14FM1). 42 4.6 2 (CL636519) CH243-5L19.SP6 CHORI-243 Ovis aries genomic clone... 36 4.7 3 (ER858021) PPTGH30TR Solanum tuberosum RHPOTKEY BAC ends Sol... 36 4.7 2 (AC171825) Bos taurus clone CH240-528L19, WORKING DRAFT SEQU... 36 5.2 7 (BB938190) Trifolium pratense cDNA clone:RCC11414. 32 5.3 3 (DU495889) 1098415953144 CHORI-243 Ovis aries genomic clone ... 36 5.6 2 (AC164016) Bos taurus clone CH240-143M5, *** SEQUENCING IN P... 36 5.7 9 (CG754841) P050-2-F05.za Ppa EcoRI BAC Library Pristionchus ... 36 5.7 2 (CL112588) ISB1-57F21_T7.1 ISB1 Xenopus (Silurana) tropicali... 32 6.2 3 (EV157083) 0080945 Brassica napus Bud library Brassica napus... 30 6.6 4 (CU468016) S.lycopersicum DNA sequence from clone LE_HBa-187... 46 6.8 1 (CR382135) Debaryomyces hansenii strain CBS767 chromosome C ... 46 6.8 1 (BX322613) Human DNA sequence from clone RP11-745D9 on chrom... 46 6.8 1 (AL357124) Human DNA sequence from clone RP11-472A16 on chro... 46 6.8 1 (AC026131) Homo sapiens chromosome 11, clone RP11-458M15, co... 46 6.8 1 (AC073925) Homo sapiens chromosome 3 clone RP11-303B19 map 3... 46 6.8 1 (AC069355) Homo sapiens chromosome 3 clone RP11-745D9 map 3,... 46 6.8 1 (CU466420) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 6.8 1 (CT737373) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 6.8 1 (AC024975) Homo sapiens chromosome 13 clone RP11-542E15 map ... 46 6.8 1 (EK234988) 1095460196390 Global-Ocean-Sampling_GS-31-01-01-1... 46 6.8 1 (CZ945340) 310915 Tomato EcoRI BAC Library Solanum lycopersi... 46 6.8 1 (CL527106) 80l06rp42.r1 RPCI-42 Bos taurus genomic clone 80l... 46 6.8 1 (CG697121) MUGQ_CH252P002Q4T7_H70_CD314_090 CHORI-252 Vervet... 46 6.8 1 (BH924343) odi55b12.b1 B.oleracea002 Brassica oleracea genom... 46 6.8 1 (EG353656) SAAH-aaa69g04.g1 Agen 0058 Schmidtea mediterranea... 46 6.8 1 (DB336342) Homo sapiens cDNA clone TESTI2005957, 3' end, mRN... 46 6.8 1 (BB981591) Plasmodium berghei str. ANKA cDNA clone: OK011875... 46 6.8 1 (BB981292) Plasmodium berghei str. ANKA cDNA clone: OK011545... 46 6.8 1 (BB974909) Plasmodium berghei str. ANKA cDNA clone: OK004726... 46 6.8 1 (CR954246) Pseudoalteromonas haloplanktis str. TAC125 chromo... 46 6.8 1 (AE001437) Clostridium acetobutylicum ATCC 824, complete gen... 46 6.8 1 (AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2... 40 7.1 14 (EV156994) 0080856 Brassica napus Bud library Brassica napus... 30 7.2 4 (BB933987) Trifolium pratense cDNA clone:RCC06550. 32 7.6 3 (AC187865) Populus trichocarpa clone Pop1-4F12, complete seq... 38 8.0 6 (BZ426126) BONLE84TF BO_1.6_2_KB_tot Brassica oleracea genom... 30 8.0 4 (AC191856) Rhesus Macaque BAC CH250-176F21 () complete sequ... 36 8.4 4 (FM170376) Oryzias latipes EST, clone M066--H8_050. 28 8.7 4 (AC184301) Strongylocentrotus purpuratus clone R3-3038N16, W... 42 9.5 4 (AW659002) 95905 MARC 1BOV Bos taurus cDNA 5', mRNA sequence. 36 9.8 2
>(BJ346691) Dictyostelium discoideum cDNA clone:dda24p14, 3' end, single read. Length = 726
Score = 1411 bits (712), Expect = 0.0 Identities = 715/716 (99%) Strand = Plus / Minus
Query: 1291 cgaattacatttgttagaaggtaatcatgaaattcgtcatgataaagttcatctcctcga 1350 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 726 cgaattacatttgttagaaggtaatcatgaaattcgtcatgataaagttcatctcctcga 667
Query: 1351 agaacgtggtattagagatggtgtcgttgtaaacttaaatcaaaatccaacctcaaatga 1410 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 666 agaacgtggtattagagatggtgtcgttgtaaacttaaatcaaaatccaacctcaaatga 607
Query: 1411 actcccactcgaattgattccattctatcgtatctatgccctcagtgaacaagaaactcg 1470 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 606 actcccactcgaattgattccattctatcgtatctatgccctcagtgaacaagaaactcg 547
Query: 1471 tgcaatcgcaccaccacaagtacctggtgaacataatcatcatcatggccatcaactcga 1530 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 546 tgcaatcgcaccaccacaagtacctggtgaacataatcatcatcatggccatcaactcga 487
Query: 1531 acttaaaccattggctttcaaaattatcactcaagagaatgaagagaaagcttattcaaa 1590 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 486 acttaaaccattggctttcaaaattatcactcaagagaatgaagagaaagcttattcaaa 427
Query: 1591 tttggttcaagcactcaaaggtaaacttgcttcttatccaaccactttagaagaggatga 1650 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 426 tttggttcaagcactcaaaggtaaacttgcttcttatccaaccactttagaagaggatga 367
Query: 1651 acaagaattgaaaaagaatccacctgcaaatcaaagattcattttatacactaaaatcaa 1710 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 366 acaagaattgaaaaagactccacctgcaaatcaaagattcattttatacactaaaatcaa 307
Query: 1711 tgaaaagaaaattttagatagaaatatcaaatatcttgaatctttaattaaaaaaggtgt 1770 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 306 tgaaaagaaaattttagatagaaatatcaaatatcttgaatctttaattaaaaaaggtgt 247
Query: 1771 tatgaatgttaccttcaaattaccagaattagttgaacatactgaacatgctaatcatga 1830 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 246 tatgaatgttaccttcaaattaccagaattagttgaacatactgaacatgctaatcatga 187
Query: 1831 tcatgaacatggtgataattgtaatcatgaagatcatggtagtcatggtcattctcatgg 1890 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 186 tcatgaacatggtgataattgtaatcatgaagatcatggtagtcatggtcattctcatgg 127
Query: 1891 tggtgatgatagtcatggtcactctcatggtggtaatgataatcataatcattcacatgg 1950 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126 tggtgatgatagtcatggtcactctcatggtggtaatgataatcataatcattcacatgg 67
Query: 1951 tggtcatggtcattcacatcaacatggtgcaaattgtaaccattaaataaacaatc 2006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 66 tggtcatggtcattcacatcaacatggtgcaaattgtaaccattaaataaacaatc 11
Score = 959 bits (484), Expect = 0.0 Identities = 487/488 (99%) Strand = Plus / Minus
Query: 2019 ccatcaactcgaacttaaaccattggctttcaaaattatcactcaagagaatgaagagaa 2078 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 498 ccatcaactcgaacttaaaccattggctttcaaaattatcactcaagagaatgaagagaa 439
Query: 2079 agcttattcaaatttggttcaagcactcaaaggtaaacttgcttcttatccaaccacttt 2138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 438 agcttattcaaatttggttcaagcactcaaaggtaaacttgcttcttatccaaccacttt 379
Query: 2139 agaagaggatgaacaagaattgaaaaagaatccacctgcaaatcaaagattcattttata 2198 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 378 agaagaggatgaacaagaattgaaaaagactccacctgcaaatcaaagattcattttata 319
Query: 2199 cactaaaatcaatgaaaagaaaattttagatagaaatatcaaatatcttgaatctttaat 2258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 318 cactaaaatcaatgaaaagaaaattttagatagaaatatcaaatatcttgaatctttaat 259
Query: 2259 taaaaaaggtgttatgaatgttaccttcaaattaccagaattagttgaacatactgaaca 2318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 258 taaaaaaggtgttatgaatgttaccttcaaattaccagaattagttgaacatactgaaca 199
Query: 2319 tgctaatcatgatcatgaacatggtgataattgtaatcatgaagatcatggtagtcatgg 2378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 198 tgctaatcatgatcatgaacatggtgataattgtaatcatgaagatcatggtagtcatgg 139
Query: 2379 tcattctcatggtggtgatgatagtcatggtcactctcatggtggtaatgataatcataa 2438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138 tcattctcatggtggtgatgatagtcatggtcactctcatggtggtaatgataatcataa 79
Query: 2439 tcattcacatggtggtcatggtcattcacatcaacatggtgcaaattgtaaccattaaat 2498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78 tcattcacatggtggtcatggtcattcacatcaacatggtgcaaattgtaaccattaaat 19
Query: 2499 aaacaatc 2506 |||||||| Sbjct: 18 aaacaatc 11
Score = 54.0 bits (27), Expect(2) = 3e-04 Identities = 48/55 (87%) Strand = Plus / Minus
Query: 2370 tagtcatggtcattctcatggtggtgatgatagtcatggtcactctcatggtggt 2424 |||||||||||| |||||||||||| |||||| |||| ||| || ||||||||| Sbjct: 117 tagtcatggtcactctcatggtggtaatgataatcataatcattcacatggtggt 63
Score = 54.0 bits (27), Expect(2) = 3e-04 Identities = 48/55 (87%) Strand = Plus / Minus
Query: 1900 tagtcatggtcactctcatggtggtaatgataatcataatcattcacatggtggt 1954 |||||||||||| |||||||||||| |||||| |||| ||| || ||||||||| Sbjct: 147 tagtcatggtcattctcatggtggtgatgatagtcatggtcactctcatggtggt 93
Score = 32.2 bits (16), Expect(2) = 3e-04 Identities = 19/20 (95%) Strand = Plus / Minus
Query: 2365 catggtagtcatggtcattc 2384 |||||| ||||||||||||| Sbjct: 71 catggtggtcatggtcattc 52
Score = 32.2 bits (16), Expect(2) = 3e-04 Identities = 19/20 (95%) Strand = Plus / Minus
Query: 1946 catggtggtcatggtcattc 1965 |||||| ||||||||||||| Sbjct: 152 catggtagtcatggtcattc 133
Score = 54.0 bits (27), Expect = 0.028 Identities = 48/55 (87%) Strand = Plus / Minus
Query: 1870 tagtcatggtcattctcatggtggtgatgatagtcatggtcactctcatggtggt 1924 |||||||||||| |||||||||||| |||||| |||| ||| || ||||||||| Sbjct: 117 tagtcatggtcactctcatggtggtaatgataatcataatcattcacatggtggt 63
Score = 54.0 bits (27), Expect = 0.028 Identities = 48/55 (87%) Strand = Plus / Minus
Query: 2400 tagtcatggtcactctcatggtggtaatgataatcataatcattcacatggtggt 2454 |||||||||||| |||||||||||| |||||| |||| ||| || ||||||||| Sbjct: 147 tagtcatggtcattctcatggtggtgatgatagtcatggtcactctcatggtggt 93
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 98226423 Number of Hits to DB: 3,075,952,543 Number of extensions: 184214715 Number of successful extensions: 15551310 Number of sequences better than 10.0: 295 Length of query: 2662 Length of database: 98,766,808,389 Length adjustment: 25 Effective length of query: 2637 Effective length of database: 96,311,147,814 Effective search space: 253972496785518 Effective search space used: 253972496785518 X1: 11 (21.8 bits) S2: 23 (46.1 bits)
|
protein update |
2009. 7.17 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
17 |
AH (FL, L) |
1 |
AF (FL, S) |
17 |
SL (DIR, L) |
1 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
6 |
CH (FL, L) |
2 |
CF (FL, S) |
5 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |