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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15568-1
Contig ID Contig-U15568-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15568-1 (Contig-U15568-1Q) /CSM_Contig/Contig-U15568-1Q.Seq.d
CACTGTTGGCCTACTGGTGGACAACAACAAGCAGCTCAAGTTTTAGTACA
ACAACAACAATCAAAAGAACAACAACAAAAAGAACAGCAAATGAGGGCAC
AACAACAGCAACAACAGCAACAACAACAGGCAATTCAACAACAGCAATTA
AAAGAACAGCAATTAAGAGAACAGCAGCAACAACAGCAACAACAACAATT
AAGAGAACAGCAATTAAGAGAACAACAATTAAGAGAGCAACAATTTAGGG
AGCAACAATTTAGGGAACAACAACAATTTCAACAACAAAATCGTCACAAT
TATCAAAATGAACAAGATAATTCGCAACAACAACAACAACAACAATATCA
ACCTTTACAACCACCACCAGTCATACCCCAAAACTATCAACAACCATCAC
TTCAAACTCTACAAGCTGCACAAGCTATTCAATCGATGCAATCAATGCAC
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACACCCACAACTCTNCATTCAGCAACAAGCATTATTACAGC
AACAACAACTACAACAACAACAACAACAACAGCAACAACAACAACAACAT
CAACAACAACAGCAACAACAACATCAACAACAACAAACACAGCAAGCTAT
TACTTCACCATTATTGAATGCAAGTCCACCAATGACTGGAAAGAGAAAAA
AAGATGACCAAGAATCTCTAGCATCTCAAAAGAAAAAAGAAAAACAAGAG
AAAAAAGATCAAAAGGAACGTGAAAAGGAAAGAGAGAAACAAGATAAAGA
AAGAGAAAAACAAGAAAAAAAAGATCAAAAGGAACGTGAAAAGAGAGAAA
AGAAAGAACAAAAAGAAAAAGAGAAAAAAGAAAAGAAGTCGAGTCAAAGA
GCAAATAAAAAAGCAAAAACTGGTGATTCTGATAATGCTGGTAGTGGTGA
TTCTCCTTTAATGTCATCACCAACAATTCCATCACATGATTTGAGTGGTT
TATCAACCTTAATGAATATTGTAGACAGTCAACAAGGTGGTAACTCCAAT
AATCAACACTACAACAACAACAACAACAACAGCAACAACAACAACAACAT
CAACAACAACAGCAACAACAACATCAACAACAACAAACACAGCAAGCTAT
TACTTCACCATTATTGAATGCAAGTCCACCAATGACTGGAAAGAGAAAAA
AAGATGACCAAGAATCTCTAGCATCTCAAAAGAAAAAAGAAAAACAAGAG
AAAAAAGATCAAAAGGAACGTGAAAAGGAAAGAGAGAAACAAGATAAAGA
AAGAGAAAAACAAGAAAAAAAAGATCAAAAGGAACGTGAAAAGAGAGAAA
AGAAAGAACAAAAAGAAAAAGAGAAAAAAGAAAAGAAGTCGAGTCAAAGA
GCAAATAAAAAAGCAAAAACTGGTGATTCTGATAATGCTGGTAGTGGTGA
TTCTCCTTTAATGTCATCACCAACAATTCCATCACATGATTTGAGTGGTT
TATCAACCTTAATGAATATTGTAGACAGTCAACAAGGTGGTAACTCCAAT
AATCAACA----------AACCACAAATTCACCAACAAATTCAACAACAA
TTCCAACAACATCAACATCATCATCAGCACCAACAACACCAACACCAACA
GCAACAACAGCAACAACAACAATATCAACAACATAATCAAAACCAACAAC
ATAATCAAAACCAACAACATAATCAAAGCCAACATAATCAAAACCAACAA
AATCAGTCATATCCATTCGATCCACAGTATTATTTACAAAGATCAACCCA
ACAACAAACACAATCACCTCCTGCACATTTAAATTACCAGTCACCACAGT
ATTATAATCAACAAAAACAGGAGGGTTTAGGTATTATTGAACAACAAAGA
AGGATAATTGAACAATCAGGCCAACCATATTTTGAAACTATAACAATAAT
AAATAAAAATAAACCAGATTATTTTGGTTTAAACATA
Gap gap included
Contig length 1977
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 10
Number of EST 14
Link to clone list U15568
List of clone(s) 

est1=AFJ756F,1,488
est2=AFO308F,99,683
est3=AFE350F,122,456
est4=AFD511F,128,315
est5=AFD511H,559,1558
est6=AFJ756Z,1559,1722
est7=SFE162Z,1559,1960
est8=AFE350Z,1567,1938
est9=SFC816Z,1570,1930
est10=AFJ660Z,1591,1954
est11=CFB820Z,1606,1917
est12=AFD511Z,1622,1936
est13=VFE854Z,1635,1975
est14=SLD862Z,1764,1978
Translated Amino Acid sequence 
llaywwtttssssfsttttikrtttkrtanegtttattatttgnsttaikrtaikrtaat
tatttikrtaikrttikrati*gati*gtttisttkssqlsk*tr*fattttttistftt
ttshtpklsttitsnstsctsysidainapttttttttttttttttttttpttlhsatsi
itattttttttttatttttstttatttstttntasyyftiieckstndwkekkr*priss
iskekrktrekrskgt*kgkretr*rkrktrkkrskgt*kerkertkrkrekrkevesks
k*ksknw*f**cw*w*fsfnvitnnsit*fewfinlneycrqstrw*lq*STLQQQQQQQ
QQQQQHQQQQQQQHQQQQTQQAITSPLLNASPPMTGKRKKDDQESLASQKKKEKQEKKDQ
KEREKEREKQDKEREKQEKKDQKEREKREKKEQKEKEKKEKKSSQRANKKAKTGDSDNAG
SGDSPLMSSPTIPSHDLSGLSTLMNIVDSQQGGNSNNQ---

---PQIHQQIQQQFQQHQHHHQHQQHQHQQQQQQQQQYQQHNQNQQHNQNQQHNQSQHNQ
NQQNQSYPFDPQYYLQRSTQQQTQSPPAHLNYQSPQYYNQQKQEGLGIIEQQRRIIEQSG
QPYFETITIINKNKPDYFGLNI
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptggqqqaaqvlvqqqqskeqqqkeqqmraqqqqqqqqqqaiqqqqlkeqqlreqqq
qqqqqqlreqqlreqqlreqqfreqqfreqqqfqqqnrhnyqneqdnsqqqqqqqyqplq
pppvipqnyqqpslqtlqaaqaiqsmqsmhqqqqqqqqqqqqqqqqqqqqhpqlxiqqqa
llqqqqlqqqqqqqqqqqqhqqqqqqqhqqqqtqqaitspllnasppmtgkrkkddqesl
asqkkkekqekkdqkerekerekqdkerekqekkdqkerekrekkeqkekekkekkssqr
ankkaktgdsdnagsgdsplmssptipshdlsglstlmnivdsqqggnsnnqhynnnnnn
snnnnninnnsnnninnnkhsklllhhy*mqvhq*lerekkmtknl*hlkrkkknkrkki
krnvkrkernkikkeknkkkkikrnvkrekrknkkkkrkkkrsrvkeqikkqklviliml
vvvill*chhqqfhhmi*vvyqp**il*tvnkvvtpiin---

---nhkftnkfnnnsnniniiistnntntnsnnsnnnninniiktnniiktnniikanii
ktnkishihsihsiiykdqpnnkhnhllhi*itshhsiiinknrrv*vllnnkeg*lnnq
anhilkl*q**ikinqiilv*t

Frame B:
tvgllvdnnkqlkf*ynnnnqknnnkknsk*ghnnsnnsnnnrqfnnsn*knsn*enssn
nsnnnn*ensn*ennn*esnnlgsnnlgnnnnfnnkivtiikmnkiirnnnnnnninlyn
hhqsypktinnhhfklyklhklfnrcnqctnnnnnnnnnnnnnnnnnnnnthnsxfsnkh
yysnnnynnnnnnsnnnnninnnsnnninnnkhsklllhhy*mqvhq*lerekkmtknl*
hlkrkkknkrkkikrnvkrkernkikkeknkkkkikrnvkrekrknkkkkrkkkrsrvke
qikkqklvilimlvvvill*chhqqfhhmi*vvyqp**il*tvnkvvtpiintttttttt
atttttstttatttstttntasyyftiieckstndwkekkr*prissiskekrktrekrs
kgt*kgkretr*rkrktrkkrskgt*kerkertkrkrekrkevesksk*ksknw*f**cw
*w*fsfnvitnnsit*fewfinlneycrqstrw*lq*st---

---ttnsptnsttipttstsssapttptptattatttistt*skptt*skptt*skpt*s
kptksvisirstvlftkinpttntitsctfklpvttvl*stktggfryy*ttkkdn*tir
ptif*nynnnk*k*trlfwfkh

Frame C:
llaywwtttssssfsttttikrtttkrtanegtttattatttgnsttaikrtaikrtaat
tatttikrtaikrttikrati*gati*gtttisttkssqlsk*tr*fattttttistftt
ttshtpklsttitsnstsctsysidainapttttttttttttttttttttpttlhsatsi
itattttttttttatttttstttatttstttntasyyftiieckstndwkekkr*priss
iskekrktrekrskgt*kgkretr*rkrktrkkrskgt*kerkertkrkrekrkevesks
k*ksknw*f**cw*w*fsfnvitnnsit*fewfinlneycrqstrw*lq*STLQQQQQQQ
QQQQQHQQQQQQQHQQQQTQQAITSPLLNASPPMTGKRKKDDQESLASQKKKEKQEKKDQ
KEREKEREKQDKEREKQEKKDQKEREKREKKEQKEKEKKEKKSSQRANKKAKTGDSDNAG
SGDSPLMSSPTIPSHDLSGLSTLMNIVDSQQGGNSNNQ---

---PQIHQQIQQQFQQHQHHHQHQQHQHQQQQQQQQQYQQHNQNQQHNQNQQHNQSQHNQ
NQQNQSYPFDPQYYLQRSTQQQTQSPPAHLNYQSPQYYNQQKQEGLGIIEQQRRIIEQSG
QPYFETITIINKNKPDYFGLNI
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15568-1 (Contig-U15568-1Q)
/CSM_Contig/Contig-U15568-1Q.Seq.d
         (1987 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15568-1 (Contig-U15568-1Q) /CSM_Contig/Conti...   502  e-141
Contig-U15856-1 (Contig-U15856-1Q) /CSM_Contig/Conti...   208  2e-53
Contig-U05005-1 (Contig-U05005-1Q) /CSM_Contig/Conti...    40  0.013
Contig-U16350-1 (Contig-U16350-1Q) /CSM_Contig/Conti...    38  0.051
Contig-U12810-1 (Contig-U12810-1Q) /CSM_Contig/Conti...    38  0.051
Contig-U12295-1 (Contig-U12295-1Q) /CSM_Contig/Conti...    38  0.051
Contig-U12075-1 (Contig-U12075-1Q) /CSM_Contig/Conti...    38  0.051
Contig-U11054-1 (Contig-U11054-1Q) /CSM_Contig/Conti...    38  0.051
Contig-U07951-1 (Contig-U07951-1Q) /CSM_Contig/Conti...    38  0.051
Contig-U05308-1 (Contig-U05308-1Q) /CSM_Contig/Conti...    38  0.051

>Contig-U15568-1 (Contig-U15568-1Q) /CSM_Contig/Contig-U15568-1Q.Seq.d
          Length = 1987

 Score =  502 bits (253), Expect = e-141
 Identities = 253/253 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1735 taatcaaaaccaacaaaatcagtcatatccattcgatccacagtattatttacaaagatc 1794
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1735 taatcaaaaccaacaaaatcagtcatatccattcgatccacagtattatttacaaagatc 1794

                                                                        
Query: 1795 aacccaacaacaaacacaatcacctcctgcacatttaaattaccagtcaccacagtatta 1854
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1795 aacccaacaacaaacacaatcacctcctgcacatttaaattaccagtcaccacagtatta 1854

                                                                        
Query: 1855 taatcaacaaaaacaggagggtttaggtattattgaacaacaaagaaggataattgaaca 1914
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1855 taatcaacaaaaacaggagggtttaggtattattgaacaacaaagaaggataattgaaca 1914

                                                                        
Query: 1915 atcaggccaaccatattttgaaactataacaataataaataaaaataaaccagattattt 1974
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1915 atcaggccaaccatattttgaaactataacaataataaataaaaataaaccagattattt 1974

                         
Query: 1975 tggtttaaacata 1987
            |||||||||||||
Sbjct: 1975 tggtttaaacata 1987


 Score =  276 bits (139), Expect = 1e-73
 Identities = 139/139 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1420 ctggtgattctgataatgctggtagtggtgattctcctttaatgtcatcaccaacaattc 1479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920  ctggtgattctgataatgctggtagtggtgattctcctttaatgtcatcaccaacaattc 979

                                                                        
Query: 1480 catcacatgatttgagtggtttatcaaccttaatgaatattgtagacagtcaacaaggtg 1539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980  catcacatgatttgagtggtttatcaaccttaatgaatattgtagacagtcaacaaggtg 1039

                               
Query: 1540 gtaactccaataatcaaca 1558
            |||||||||||||||||||
Sbjct: 1040 gtaactccaataatcaaca 1058


 Score =  276 bits (139), Expect = 1e-73
 Identities = 139/139 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1420 ctggtgattctgataatgctggtagtggtgattctcctttaatgtcatcaccaacaattc 1479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1420 ctggtgattctgataatgctggtagtggtgattctcctttaatgtcatcaccaacaattc 1479

                                                                        
Query: 1480 catcacatgatttgagtggtttatcaaccttaatgaatattgtagacagtcaacaaggtg 1539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1480 catcacatgatttgagtggtttatcaaccttaatgaatattgtagacagtcaacaaggtg 1539

                               
Query: 1540 gtaactccaataatcaaca 1558
            |||||||||||||||||||
Sbjct: 1540 gtaactccaataatcaaca 1558


 Score =  266 bits (134), Expect = 1e-70
 Identities = 134/134 (100%)
 Strand = Plus / Plus

                                                                        
Query: 920  ctggtgattctgataatgctggtagtggtgattctcctttaatgtcatcaccaacaattc 979
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920  ctggtgattctgataatgctggtagtggtgattctcctttaatgtcatcaccaacaattc 979

                                                                        
Query: 980  catcacatgatttgagtggtttatcaaccttaatgaatattgtagacagtcaacaaggtg 1039
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980  catcacatgatttgagtggtttatcaaccttaatgaatattgtagacagtcaacaaggtg 1039

                          
Query: 1040 gtaactccaataat 1053
            ||||||||||||||
Sbjct: 1040 gtaactccaataat 1053


 Score =  266 bits (134), Expect = 1e-70
 Identities = 134/134 (100%)
 Strand = Plus / Plus

                                                                        
Query: 920  ctggtgattctgataatgctggtagtggtgattctcctttaatgtcatcaccaacaattc 979
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1420 ctggtgattctgataatgctggtagtggtgattctcctttaatgtcatcaccaacaattc 1479

                                                                        
Query: 980  catcacatgatttgagtggtttatcaaccttaatgaatattgtagacagtcaacaaggtg 1039
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1480 catcacatgatttgagtggtttatcaaccttaatgaatattgtagacagtcaacaaggtg 1539

                          
Query: 1040 gtaactccaataat 1053
            ||||||||||||||
Sbjct: 1540 gtaactccaataat 1553


 Score =  208 bits (105), Expect = 2e-53
 Identities = 105/105 (100%)
 Strand = Plus / Plus

                                                                       
Query: 346 tatcaacctttacaaccaccaccagtcataccccaaaactatcaacaaccatcacttcaa 405
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tatcaacctttacaaccaccaccagtcataccccaaaactatcaacaaccatcacttcaa 405

                                                        
Query: 406 actctacaagctgcacaagctattcaatcgatgcaatcaatgcac 450
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 actctacaagctgcacaagctattcaatcgatgcaatcaatgcac 450


 Score =  131 bits (66), Expect = 5e-30
 Identities = 80/87 (91%)
 Strand = Plus / Plus

                                                                        
Query: 1140 cagcaagctattacttcaccattattgaatgcaagtccaccaatgactggaaagagnnnn 1199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 640  cagcaagctattacttcaccattattgaatgcaagtccaccaatgactggaaagagaaaa 699

                                       
Query: 1200 nnngatgaccaagaatctctagcatct 1226
               ||||||||||||||||||||||||
Sbjct: 700  aaagatgaccaagaatctctagcatct 726


 Score =  131 bits (66), Expect = 5e-30
 Identities = 80/87 (91%)
 Strand = Plus / Plus

                                                                        
Query: 1140 cagcaagctattacttcaccattattgaatgcaagtccaccaatgactggaaagagnnnn 1199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 1140 cagcaagctattacttcaccattattgaatgcaagtccaccaatgactggaaagagaaaa 1199

                                       
Query: 1200 nnngatgaccaagaatctctagcatct 1226
               ||||||||||||||||||||||||
Sbjct: 1200 aaagatgaccaagaatctctagcatct 1226


 Score =  129 bits (65), Expect = 2e-29
 Identities = 79/86 (91%)
 Strand = Plus / Plus

                                                                        
Query: 642  gcaagctattacttcaccattattgaatgcaagtccaccaatgactggaaagagnnnnnn 701
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 1142 gcaagctattacttcaccattattgaatgcaagtccaccaatgactggaaagagaaaaaa 1201

                                      
Query: 702  ngatgaccaagaatctctagcatctc 727
             |||||||||||||||||||||||||
Sbjct: 1202 agatgaccaagaatctctagcatctc 1227


 Score =  129 bits (65), Expect = 2e-29
 Identities = 79/86 (91%)
 Strand = Plus / Plus

                                                                       
Query: 642 gcaagctattacttcaccattattgaatgcaagtccaccaatgactggaaagagnnnnnn 701
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 642 gcaagctattacttcaccattattgaatgcaagtccaccaatgactggaaagagaaaaaa 701

                                     
Query: 702 ngatgaccaagaatctctagcatctc 727
            |||||||||||||||||||||||||
Sbjct: 702 agatgaccaagaatctctagcatctc 727


 Score = 93.7 bits (47), Expect = 1e-18
 Identities = 47/47 (100%)
 Strand = Plus / Plus

                                                         
Query: 1  cactgttggcctactggtggacaacaacaagcagctcaagttttagt 47
          |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  cactgttggcctactggtggacaacaacaagcagctcaagttttagt 47


 Score = 71.9 bits (36), Expect = 4e-12
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 289 aatcgtcacaattatcaaaatgaacaagataattcg 324
           ||||||||||||||||||||||||||||||||||||
Sbjct: 289 aatcgtcacaattatcaaaatgaacaagataattcg 324


 Score = 32.2 bits (16), Expect = 3.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 1735 taatcaaaaccaacaa 1750
            ||||||||||||||||
Sbjct: 1702 taatcaaaaccaacaa 1717


 Score = 32.2 bits (16), Expect = 3.1
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 1735 taatcaaaaccaacaa 1750
            ||||||||||||||||
Sbjct: 1684 taatcaaaaccaacaa 1699


>Contig-U15856-1 (Contig-U15856-1Q) /CSM_Contig/Contig-U15856-1Q.Seq.d
          Length = 1642

 Score =  208 bits (105), Expect = 2e-53
 Identities = 105/105 (100%)
 Strand = Plus / Plus

                                                                       
Query: 346 tatcaacctttacaaccaccaccagtcataccccaaaactatcaacaaccatcacttcaa 405
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tatcaacctttacaaccaccaccagtcataccccaaaactatcaacaaccatcacttcaa 489

                                                        
Query: 406 actctacaagctgcacaagctattcaatcgatgcaatcaatgcac 450
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 actctacaagctgcacaagctattcaatcgatgcaatcaatgcac 534


 Score =  131 bits (66), Expect = 5e-30
 Identities = 80/87 (91%)
 Strand = Plus / Plus

                                                                        
Query: 1140 cagcaagctattacttcaccattattgaatgcaagtccaccaatgactggaaagagnnnn 1199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 724  cagcaagctattacttcaccattattgaatgcaagtccaccaatgactggaaagagaaaa 783

                                       
Query: 1200 nnngatgaccaagaatctctagcatct 1226
               ||||||||||||||||||||||||
Sbjct: 784  aaagatgaccaagaatctctagcatct 810


 Score =  129 bits (65), Expect = 2e-29
 Identities = 79/86 (91%)
 Strand = Plus / Plus

                                                                       
Query: 642 gcaagctattacttcaccattattgaatgcaagtccaccaatgactggaaagagnnnnnn 701
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 726 gcaagctattacttcaccattattgaatgcaagtccaccaatgactggaaagagaaaaaa 785

                                     
Query: 702 ngatgaccaagaatctctagcatctc 727
            |||||||||||||||||||||||||
Sbjct: 786 agatgaccaagaatctctagcatctc 811


 Score = 71.9 bits (36), Expect = 4e-12
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 289 aatcgtcacaattatcaaaatgaacaagataattcg 324
           ||||||||||||||||||||||||||||||||||||
Sbjct: 373 aatcgtcacaattatcaaaatgaacaagataattcg 408


 Score = 54.0 bits (27), Expect = 9e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 21  acaacaacaagcagctcaagttttagt 47
           |||||||||||||||||||||||||||
Sbjct: 105 acaacaacaagcagctcaagttttagt 131


>Contig-U05005-1 (Contig-U05005-1Q) /CSM_Contig/Contig-U05005-1Q.Seq.d
          Length = 596

 Score = 40.1 bits (20), Expect = 0.013
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1799 caacaacaaacacaatcacc 1818
            ||||||||||||||||||||
Sbjct: 330  caacaacaaacacaatcacc 311


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,515
Number of Sequences: 8402
Number of extensions: 21515
Number of successful extensions: 4746
Number of sequences better than 10.0: 721
length of query: 1987
length of database: 8,075,542
effective HSP length: 17
effective length of query: 1970
effective length of database: 7,932,708
effective search space: 15627434760
effective search space used: 15627434760
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 2. 1
Homology vs DNA 
Query= Contig-U15568-1 (Contig-U15568-1Q) /CSM_Contig/Contig-U15568-1Q.Seq.d
         (1987 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU052738) Dictyostelium discoideum slug cDNA, clone SLD862.      319   e-108  2
(BJ428069) Dictyostelium discoideum cDNA clone:ddv10l14, 3' ...   264   e-103  2
(BJ400296) Dictyostelium discoideum cDNA clone:dds9k15, 3' e...   262   e-102  3
(BJ342103) Dictyostelium discoideum cDNA clone:dda9d13, 3' e...   375   4e-99  1
(BJ344813) Dictyostelium discoideum cDNA clone:dda20g16, 3' ...   262   6e-95  3
(BJ341754) Dictyostelium discoideum cDNA clone:dda8e03, 3' e...   264   8e-88  3
(BJ399490) Dictyostelium discoideum cDNA clone:dds6p04, 3' e...   264   1e-76  3
(BJ371247) Dictyostelium discoideum cDNA clone:ddc57a08, 5' ...   276   2e-75  2
(BJ373811) Dictyostelium discoideum cDNA clone:ddc4h06, 3' e...   262   1e-73  3
(BJ328723) Dictyostelium discoideum cDNA clone:dda29p01, 5' ...   208   2e-63  2
(BJ327509) Dictyostelium discoideum cDNA clone:dda20p13, 5' ...   208   6e-53  2
(BJ388569) Dictyostelium discoideum cDNA clone:dds6p04, 5' e...   208   6e-49  1
(BJ325069) Dictyostelium discoideum cDNA clone:dda9d13, 5' e...   208   6e-49  1
(AU265854) Dictyostelium discoideum vegetative cDNA clone:VS...   107   1e-37  2
(AU265855) Dictyostelium discoideum vegetative cDNA clone:VS...    94   2e-14  1
(AU052948) Dictyostelium discoideum slug cDNA, clone SLF367.       94   2e-14  1
(BJ409946) Dictyostelium discoideum cDNA clone:ddv10l14, 5' ...    94   2e-14  1
(BJ386124) Dictyostelium discoideum cDNA clone:ddc57a08, 3' ...    82   9e-11  1
(AM451377) Vitis vinifera contig VV78X005767.11, whole genom...    52   0.082  1
(AM435998) Vitis vinifera, whole genome shotgun sequence, co...    52   0.082  1
(CR405711) Zebrafish DNA sequence from clone DKEY-166C18 in ...    44   0.11   2
(AC133099) Mus musculus BAC clone RP23-90K8 from chromosome ...    50   0.32   1
(AY101841) Reticulitermes lucifugus 16S ribosomal RNA gene, ...    50   0.32   1
(AY101840) Reticulitermes lucifugus 16S ribosomal RNA gene, ...    50   0.32   1
(AY101838) Reticulitermes speratus 16S ribosomal RNA gene, p...    50   0.32   1
(AY101837) Reticulitermes balkanensis 16S ribosomal RNA gene...    50   0.32   1
(AC134916) Mus musculus chromosome UNK clone RP23-14L7, WORK...    50   0.32   1
(AC232965) Tupaia belangeri clone CH275-504A23, WORKING DRAF...    50   0.32   1
(AC231243) Tupaia belangeri clone CH275-45H23, WORKING DRAFT...    50   0.32   1
(AC158233) Mus musculus BAC clone RP23-240E15 from chromosom...    48   1.3    1
(AC137525) Mus musculus BAC clone RP23-68H24 from chromosome...    48   1.3    1
(EU375352) Glycine max transcription factor (WRKY22) mRNA, c...    48   1.3    1
(DQ350736) Ajellomyces capsulatus nitrosative stress induced...    48   1.3    1
(AP008215) Oryza sativa (japonica cultivar-group) genomic DN...    48   1.3    1
(AP005313) Oryza sativa Japonica Group genomic DNA, chromoso...    48   1.3    1
(AM460226) Vitis vinifera, whole genome shotgun sequence, co...    48   1.3    1
(EA683711) Sequence 62590 from patent US 7365185.                  48   1.3    1
(EA646554) Sequence 25433 from patent US 7365185.                  48   1.3    1
(CU929483) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   1.3    1
(AC079639) Mus musculus clone RP23-377C20, WORKING DRAFT SEQ...    48   1.3    1
(AC173398) Bos taurus clone CH240-306A16, WORKING DRAFT SEQU...    48   1.3    1
(AK244154) Glycine max cDNA, clone: GMFL01-02-D20.                 48   1.3    1
(AZ716653) RPCI-24-123G11.TJ RPCI-24 Mus musculus genomic cl...    48   1.3    1
(CR865921) Sus scrofa BES.                                         48   1.3    1
(CC259591) CH261-88C16_RM1.1 CH261 Gallus gallus genomic clo...    48   1.3    1
(CV612051) zcm31f08.y2 F_HC7CDNA Ajellomyces capsulatus cDNA...    48   1.3    1
(CV612030) zcm31f08.x2 F_HC7CDNA Ajellomyces capsulatus cDNA...    48   1.3    1
(CV611265) zcn22e05.y2 F_HC7CDNA Ajellomyces capsulatus cDNA...    48   1.3    1
(CV596992) zcm32a11.y2 F_HC7CDNA Ajellomyces capsulatus cDNA...    48   1.3    1
(CV596956) zcm32a11.x2 F_HC7CDNA Ajellomyces capsulatus cDNA...    48   1.3    1
(CV587570) mdu25e12.b2 Hc7B_M Ajellomyces capsulatus cDNA 3'...    48   1.3    1
(AI973570) sc88e12.y1 Gm-c1019 Glycine max cDNA clone GENOME...    48   1.3    1
(BM094322) saj14a08.y1 Gm-c1066 Glycine max cDNA clone GENOM...    48   1.3    1
(BG046482) saa54g06.y1 Gm-c1060 Glycine soja cDNA clone GENO...    48   1.3    1
(GE117011) 454GmaGlobSeed859659 Soybean Seeds Containing Glo...    48   1.3    1
(GD941365) 454GmaGlobSeed684014 Soybean Seeds Containing Glo...    48   1.3    1
(GD877875) 454GmaGlobSeed620524 Soybean Seeds Containing Glo...    48   1.3    1
(FK599269) 454GmaGlobSeed333901 Soybean Seeds Containing Glo...    48   1.3    1
(FK597786) 454GmaGlobSeed332418 Soybean Seeds Containing Glo...    48   1.3    1
(FK341710) 454GmaGlobSeed76342 Soybean Seeds Containing Glob...    48   1.3    1
(FK321631) 454GmaGlobSeed56263 Soybean Seeds Containing Glob...    48   1.3    1
(FK314177) 454GmaGlobSeed48809 Soybean Seeds Containing Glob...    48   1.3    1
(EV843511) TT1EU89TV Tetrahymena thermophila SB210 cDNA libr...    48   1.3    1
(EV842861) TT1EI76TV Tetrahymena thermophila SB210 cDNA libr...    48   1.3    1
(EV829239) FMMA873TFB Tetrahymena thermophila SB210 cDNA lib...    48   1.3    1
(EV828366) FMMA873TF Tetrahymena thermophila SB210 cDNA libr...    48   1.3    1
(EY362761) CAWZ8419.rev CAWZ Helobdella robusta Primary Late...    46   1.9    2
(EY355706) CAWZ3961.rev CAWZ Helobdella robusta Primary Late...    46   2.1    2
(BJ326439) Dictyostelium discoideum cDNA clone:dda16b14, 5' ...    36   2.4    2
(AC157883) Rhinolophus ferrumequinum clone VMRC7-198P5, WORK...    34   2.5    2
(AC164756) Bos taurus clone CH240-155L2, *** SEQUENCING IN P...    40   3.7    3
(AC007948) Genomic sequence of Homo sapiens clone R417F14A f...    40   4.5    3
(BJ411539) Dictyostelium discoideum cDNA clone:ddv4g22, 5' e...    36   5.0    2
(EA754397) Sequence 1 from patent US 7371811.                      46   5.1    1
(DL113001) Diagnosis of existing illnesses or that praedispo...    46   5.1    1
(DL113000) Diagnosis of existing illnesses or that praedispo...    46   5.1    1
(DL036366) Diagnosis of existing illnesses or that praedispo...    46   5.1    1
(DL036365) Diagnosis of existing illnesses or that praedispo...    46   5.1    1
(BD265782) Schizophrenia associated genes, proteins and bial...    46   5.1    1
(AX150825) Sequence 1 from Patent WO0140493.                       46   5.1    1
(AR894456) Sequence 1 from patent US 7067627.                      46   5.1    1
(AR308342) Sequence 1 from patent US 6555316.                      46   5.1    1
(AR244312) Sequence 1 from patent US 6476208.                      46   5.1    1
(AY101839) Reticulitermes clypeatus 16S ribosomal RNA gene, ...    46   5.1    1
(AL138954) Human DNA sequence from clone RP11-100K21 on chro...    46   5.1    1
(AE014312) Homo sapiens chromosome 13q34 schizophrenia regio...    46   5.1    1
(AC096735) Homo sapiens BAC clone RP11-135M12 from 4, comple...    46   5.1    1
(CU633953) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   5.1    1
(AC094178) Rattus norvegicus clone CH230-2P20, WORKING DRAFT...    46   5.1    1
(AC093613) Schistosoma mansoni chromosome 3 clone Sm1-56D5, ...    46   5.1    1
(CR938723) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   5.1    1
(AC225316) Nomascus leucogenys chromosome UNK clone CH271-77...    46   5.1    1
(AZ543512) ENTET33TF Entamoeba histolytica Sheared DNA Entam...    46   5.1    1
(FI032232) CHO_OF6947xa05r1.ab1 CHO_OF6 Nicotiana tabacum ge...    46   5.1    1
(FH999609) CHO_OF6887xj18f1.ab1 CHO_OF6 Nicotiana tabacum ge...    46   5.1    1
(ET963071) CHO_OF595xn16r1.ab1 CHO_OF Nicotiana tabacum geno...    46   5.1    1
(ET963032) CHO_OF595xn16f1.ab1 CHO_OF Nicotiana tabacum geno...    46   5.1    1
(AM619374) Entamoeba invadens IP1 GSS, clone inv120a08.p1k.        46   5.1    1
(AG172359) Pan troglodytes DNA, clone: RP43-041P22.T7.             46   5.1    1
(BQ995387) QGF9N19.yg.ab1 QG_EFGHJ lettuce serriola Lactuca ...    46   5.1    1
(AB003069) Trypanosoma cruzi clone TcCE5-9-4 mRNA.                 46   5.1    1
(CT573497) Zebrafish DNA sequence from clone DKEY-8E10 in li...    40   5.8    2
(BJ327264) Dictyostelium discoideum cDNA clone:dda19f21, 5' ...    36   6.2    2
(DE919772) Macropus eugenii DNA, BAC clone: MEB1-106G15_R, 3...    42   8.0    2
(AF228826) Strongylocentrotus purpuratus clone SpSRCR20 scav...    36   8.2    2

>(AU052738) Dictyostelium discoideum slug cDNA, clone SLD862.
          Length = 215

 Score =  319 bits (161), Expect(2) = e-108
 Identities = 161/161 (100%)
 Strand = Plus / Plus


Query: 1774 acagtattatttacaaagatcaacccaacaacaaacacaatcacctcctgcacatttaaa 1833
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    acagtattatttacaaagatcaacccaacaacaaacacaatcacctcctgcacatttaaa 60


Query: 1834 ttaccagtcaccacagtattataatcaacaaaaacaggagggtttaggtattattgaaca 1893
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   ttaccagtcaccacagtattataatcaacaaaaacaggagggtttaggtattattgaaca 120


Query: 1894 acaaagaaggataattgaacaatcaggccaaccatattttg 1934
            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  acaaagaaggataattgaacaatcaggccaaccatattttg 161

 Score =  107 bits (54), Expect(2) = e-108
 Identities = 54/54 (100%)
 Strand = Plus / Plus


Query: 1934 gaaactataacaataataaataaaaataaaccagattattttggtttaaacata 1987
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162  gaaactataacaataataaataaaaataaaccagattattttggtttaaacata 215

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 837,031,326
Number of extensions: 53243940
Number of successful extensions: 5210623
Number of sequences better than 10.0: 105
Length of query: 1987
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1963
Effective length of database: 96,409,374,237
Effective search space: 189251601627231
Effective search space used: 189251601627231
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
protein update 2009. 7.17
Homology vs Protein 
Query= Contig-U15568-1 (Contig-U15568-1Q) /CSM_Contig/Contig-U15568-1Q.Seq.d
         (1987 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,140,766,248
Number of extensions: 12280669
Number of successful extensions: 33497
Number of sequences better than 10.0: 0
Number of HSP's gapped: 33486
Number of HSP's successfully gapped: 0
Length of query: 662
Length of database: 1,051,180,864
Length adjustment: 135
Effective length of query: 527
Effective length of database: 614,245,399
Effective search space: 323707325273
Effective search space used: 323707325273
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.59  gvh: 0.41  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.09
 nuc: 0.41  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  8.0 %: cytoplasmic
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U15568-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 5
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 2
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0