>Contig-U15566-1 (Contig-U15566-1Q) /CSM_Contig/Contig-U15566-1Q.Seq.d
ATTTTTTTATAAACTAATTGTACAACAATAATAACAACAATCAATAATAA
TATAATGATGGAAGATGAAATTGATATAGATTTTTCAAATGAAATCTCAA
GACAAGATGTATTACAATTAAGAGAATATTATGATAAATTATTTCCATTT
GATTTATTATATGATTGGTTAACAATAAATAGTATAAATGAAAAAGAAGA
AGATAAAAAGAGAGCATTTGAAGGAAGAGAATTTTCAGTAAGGATCAATA
AAGTATCTTCATCATTTGTTATTCGTAATAAATCATTCAATAGAGTTGAA
GATTTAAAAGAATTTTTAAAAGGTAGACAAAATATTGATGGTGTATATGA
AGTACCAGAGAGATTAGATATTGGACCCATCTGTAGTTGGGAACCATCTA
AAAAGGCAACAGTTTCAGATTACCAACCAGTGTCAAAGGAATTGGTATTC
GATATTGATGTTGATGATTATAATCCAATTCGTGTTTGTTGTTCATCAAC
ATCACTATGTGAAAAGTGTTGGGGATTTTTAGCAGTTTCAGCAGAGTTTA
TAGATAATTATCTTAGGGAATGTTTTGGTT----------TAGGGAATGT
TTTGGTTTCCAACAGATAATGTACGTTTTTAGTGGTCGTCGTGGTTTACA
CATTTGGGTGTCGGATAGAGCCGCACAACATCTAACAAGAGAGAATCGTG
CTTCAATTTTAAATCATATCAGAGTTGAGTTATCTCAAAATCAAATCCCA
ATTCTTAAACGTTCATTCGACCAAATTCTATTACCACACTTTGAAAAATG
CATTATAGAGGAACAACAAATTTTCACCAATGAAAAACAACGTAAAAACT
TTTTATCATTATTACCAATCTCTTACAAGAGACAAGATAGAAAAATCACT
TTAACGCCATCTGAAGATATTGAAAAGAAATTAAAAGAAATTCAAGATGA
AAATTTATCAAACTCTGAAATTTGGTTCGCTGTTAAATCTTATCTCGAAG
ATAATAATTTAAAGGAACATCTCTACAATTTAGTTTTCCATTATACAATG
CCAAGAATTGATGAACCAGTAACGATTGGTCTTGATCATCTAGGGAATGT
TTTGGTTTCCAACAGATAATGTACGTTTTTAGTGGTCGTCGTGGTTTACA
CATTTGGGTGTCGGATAGAGCCGCACAACATCTAACAAGAGAGAATCGTG
CTTCAATTTTAAATCATATCAGAGTTGAGTTATCTCAAAATCAAATCCCA
ATTCTTAAACGTTCATTCGACCAAATTCTATTACCACACTTTGAAAAATG
CATTATAGAGGAACAACAAATTTTCACCAATGAAAAACAACGTAAAAACT
TTTTATCATTATTACCAATCTCTTACAAGAGACAAGATAGAAAAATCCCT
TTAACGCCATCTGAAGATATTGAAAAGAAATTAAAAGAAATTCAAGATGA
AAATTTATCAAACTCTGAAATTTGGTTCGCTGTTAAATCTTATCTCGAAG
ATAATAATTTAAAGGAACATCTCTACAATTTAGTTTTCCATTATACAATG
CCAAGAATTGATGAACCAGTAACGATTGGTCTTGATCATCTTTTGAAATC
TCCATTCTGTATACACCCTGATACAAAGAAACTTTGTGTTCCTTTGGATA
TTAATGAAATTTATAAATTTAATCCAAATCAAGTTCCAACAGTTGATCAA
TTAATTAATGATCCAAAATTATTTAACAAATTTAAAAAAATATTTAAAAA
TCATGTAAATCAAATGAAATTAAAATATAATTTAACAATTCAAGATCCAA
TGGAATTTTAATAATAAATAAGAATAATAAAAAAAAAAAA

est1=AFD446F,1,481
est2=VFC123F,5,580
est3=SFE189F,11,547
est4=AFD446H,581,1580
est5=AFD446Z,1178,1811
est6=VFC123Z,1188,1801
est7=SFH468Z,1219,1826
est8=SFE189Z,1248,1830

ifl*TNCTTIITTINNNIMMEDEIDIDFSNEISRQDVLQLREYYDKLFPFDLLYDWLTIN
SINEKEEDKKRAFEGREFSVRINKVSSSFVIRNKSFNRVEDLKEFLKGRQNIDGVYEVPE
RLDIGPICSWEPSKKATVSDYQPVSKELVFDIDVDDYNPIRVCCSSTSLCEKCWGFLAVS
AEFIDNYLRECFG---

---RECFGFQQIMYVFSGRRGLHIWVSDRAAQHLTRENRASILNHIRVELSQNQIPILKR
SFDQILLPHFEKCIIEEQQIFTNEKQRKNFLSLLPISYKRQDRKITLTPSEDIEKKLKEI
QDENLSNSEIWFAVKSYLEDNNLKEHLYNLVFHYTMPRIDEPVTIGLDHLGNVLVSNR*c
tflvvvvvytfgcriephni*qerivlqf*iiselsylkiksqflnvhstkfyyhtlkna
l*rnnkfspmknnvktfyhyyqsltrdkieksl*rhlkilkrn*kkfkmkiyqtlkfgsl
lnliskiii*rnisti*fsiiqcqelmnq*rlvliif*nlhsvytliqrnfvflwilmkf
inliqikfqqlin*lmiqnyltnlkkylkim*ik*n*nii*qfkiqwnfnnk*e**kkk

Frame A:
ifl*TNCTTIITTINNNIMMEDEIDIDFSNEISRQDVLQLREYYDKLFPFDLLYDWLTIN
SINEKEEDKKRAFEGREFSVRINKVSSSFVIRNKSFNRVEDLKEFLKGRQNIDGVYEVPE
RLDIGPICSWEPSKKATVSDYQPVSKELVFDIDVDDYNPIRVCCSSTSLCEKCWGFLAVS
AEFIDNYLRECFG---

---*gmfwfptdnvrf*wsswfthlgvg*srttsnkrescfnfksyqs*visksnpns*t
firpnsittl*kmhyrgttnfhq*ktt*klfiiitnllqetr*knhfnai*ry*keikrn
sr*kfikl*nlvrc*ilsrr**fkgtslqfsfplynakn**tsndws*ssrecfgfqqim
yvfsgrrglhiwvsdraaqhltrenrasilnhirvelsqnqipilkrsfdqillphfekc
iieeqqiftnekqrknflsllpisykrqdrkipltpsediekklkeiqdenlsnseiwfa
vksylednnlkehlynlvfhytmpridepvtigldhllkspfcihpdtkklcvpldinei
ykfnpnqvptvdqlindpklfnkfkkifknhvnqmklkynltiqdpmef***iriikkk

Frame B:
ffyklivqq**qqsiii**wkmkli*ifqmksqdkmyyn*eniminyfhliyymig*q*i
v*mkkkkikrehlkeenfq*gsikylhhllfvinhsielki*knf*kvdkilmvymkyqr
d*ildpsvvgnhlkrqqfqitnqcqrnwysilmlmiiiqfvfvvhqhhyvksvgdf*qfq
qsl*iiilgnvlv---

---RECFGFQQIMYVFSGRRGLHIWVSDRAAQHLTRENRASILNHIRVELSQNQIPILKR
SFDQILLPHFEKCIIEEQQIFTNEKQRKNFLSLLPISYKRQDRKITLTPSEDIEKKLKEI
QDENLSNSEIWFAVKSYLEDNNLKEHLYNLVFHYTMPRIDEPVTIGLDHLGNVLVSNR*c
tflvvvvvytfgcriephni*qerivlqf*iiselsylkiksqflnvhstkfyyhtlkna
l*rnnkfspmknnvktfyhyyqsltrdkieksl*rhlkilkrn*kkfkmkiyqtlkfgsl
lnliskiii*rnisti*fsiiqcqelmnq*rlvliif*nlhsvytliqrnfvflwilmkf
inliqikfqqlin*lmiqnyltnlkkylkim*ik*n*nii*qfkiqwnfnnk*e**kkk

Frame C:
ffin*lynnnnnnq**yndgr*n*yrffk*nlktrcitikril**iisi*fii*lvnnk*
yk*krrr*kesi*rkrifskdq*sifiicys**iiq*s*rfkrifkr*tky*wci*stre
irywthl*lgti*kgnsfrlptsvkgigiry*c**l*snscllfinitm*kvlgifssfs
rvyr*ls*gmfw---

---gnvlvsnr*ctflvvvvvytfgcriephni*qerivlqf*iiselsylkiksqflnv
hstkfyyhtlknal*rnnkfspmknnvktfyhyyqsltrdkieksl*rhlkilkrn*kkf
kmkiyqtlkfgsllnliskiii*rnisti*fsiiqcqelmnq*rlvlii*gmfwfptdnv
rf*wsswfthlgvg*srttsnkrescfnfksyqs*visksnpns*tfirpnsittl*kmh
yrgttnfhq*ktt*klfiiitnllqetr*knpfnai*ry*keikrnsr*kfikl*nlvrc
*ilsrr**fkgtslqfsfplynakn**tsndws*ssfeisilytp*yketlcsfgy**nl
*i*sksssns*sin**skii*qi*kni*kscksneiki*fnnsrsngiliinknnkkkk

Query= Contig-U15566-1 (Contig-U15566-1Q)
/CSM_Contig/Contig-U15566-1Q.Seq.d
         (1840 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15566-1 (Contig-U15566-1Q) /CSM_Contig/Conti...  3360  0.0
Contig-U16519-1 (Contig-U16519-1Q) /CSM_Contig/Conti...    48  5e-05
Contig-U16518-1 (Contig-U16518-1Q) /CSM_Contig/Conti...    48  5e-05
Contig-U01876-1 (Contig-U01876-1Q) /CSM_Contig/Conti...    48  5e-05
Contig-U15984-1 (Contig-U15984-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U09342-1 (Contig-U09342-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U15883-1 (Contig-U15883-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U09286-1 (Contig-U09286-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U06560-1 (Contig-U06560-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U05782-1 (Contig-U05782-1Q) /CSM_Contig/Conti...    36  0.19

>Contig-U15566-1 (Contig-U15566-1Q) /CSM_Contig/Contig-U15566-1Q.Seq.d
          Length = 1840

 Score = 3360 bits (1695), Expect = 0.0
 Identities = 1725/1725 (100%)
 Strand = Plus / Plus

                                                                        
Query: 9    ataaactaattgtacaacaataataacaacaatcaataataatataatgatggaagatga 68
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9    ataaactaattgtacaacaataataacaacaatcaataataatataatgatggaagatga 68

                                                                        
Query: 69   aattgatatagatttttcaaatgaaatctcaagacaagatgtattacaattaagagaata 128
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69   aattgatatagatttttcaaatgaaatctcaagacaagatgtattacaattaagagaata 128

                                                                        
Query: 129  ttatgataaattatttccatttgatttattatatgattggttaacaataaatagtataaa 188
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129  ttatgataaattatttccatttgatttattatatgattggttaacaataaatagtataaa 188

                                                                        
Query: 189  tgaaaaagaagaagataaaaagagagcatttgaaggaagagaattttcagtaaggatcaa 248
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189  tgaaaaagaagaagataaaaagagagcatttgaaggaagagaattttcagtaaggatcaa 248

                                                                        
Query: 249  taaagtatcttcatcatttgttattcgtaataaatcattcaatagagttgaagatttaaa 308
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249  taaagtatcttcatcatttgttattcgtaataaatcattcaatagagttgaagatttaaa 308

                                                                        
Query: 309  agaatttttaaaaggtagacaaaatattgatggtgtatatgaagtaccagagagattaga 368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309  agaatttttaaaaggtagacaaaatattgatggtgtatatgaagtaccagagagattaga 368

                                                                        
Query: 369  tattggacccatctgtagttgggaaccatctaaaaaggcaacagtttcagattaccaacc 428
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369  tattggacccatctgtagttgggaaccatctaaaaaggcaacagtttcagattaccaacc 428

                                                                        
Query: 429  agtgtcaaaggaattggtattcgatattgatgttgatgattataatccaattcgtgtttg 488
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429  agtgtcaaaggaattggtattcgatattgatgttgatgattataatccaattcgtgtttg 488

                                                                        
Query: 489  ttgttcatcaacatcactatgtgaaaagtgttggggatttttagcagtttcagcagagtt 548
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489  ttgttcatcaacatcactatgtgaaaagtgttggggatttttagcagtttcagcagagtt 548

                                                                        
Query: 549  tatagataattatcttagggaatgttttggttnnnnnnnnnntagggaatgttttggttt 608
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549  tatagataattatcttagggaatgttttggttnnnnnnnnnntagggaatgttttggttt 608

                                                                        
Query: 609  ccaacagataatgtacgtttttagtggtcgtcgtggtttacacatttgggtgtcggatag 668
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609  ccaacagataatgtacgtttttagtggtcgtcgtggtttacacatttgggtgtcggatag 668

                                                                        
Query: 669  agccgcacaacatctaacaagagagaatcgtgcttcaattttaaatcatatcagagttga 728
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669  agccgcacaacatctaacaagagagaatcgtgcttcaattttaaatcatatcagagttga 728

                                                                        
Query: 729  gttatctcaaaatcaaatcccaattcttaaacgttcattcgaccaaattctattaccaca 788
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729  gttatctcaaaatcaaatcccaattcttaaacgttcattcgaccaaattctattaccaca 788

                                                                        
Query: 789  ctttgaaaaatgcattatagaggaacaacaaattttcaccaatgaaaaacaacgtaaaaa 848
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789  ctttgaaaaatgcattatagaggaacaacaaattttcaccaatgaaaaacaacgtaaaaa 848

                                                                        
Query: 849  ctttttatcattattaccaatctcttacaagagacaagatagaaaaatcactttaacgcc 908
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849  ctttttatcattattaccaatctcttacaagagacaagatagaaaaatcactttaacgcc 908

                                                                        
Query: 909  atctgaagatattgaaaagaaattaaaagaaattcaagatgaaaatttatcaaactctga 968
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909  atctgaagatattgaaaagaaattaaaagaaattcaagatgaaaatttatcaaactctga 968

                                                                        
Query: 969  aatttggttcgctgttaaatcttatctcgaagataataatttaaaggaacatctctacaa 1028
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969  aatttggttcgctgttaaatcttatctcgaagataataatttaaaggaacatctctacaa 1028

                                                                        
Query: 1029 tttagttttccattatacaatgccaagaattgatgaaccagtaacgattggtcttgatca 1088
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 tttagttttccattatacaatgccaagaattgatgaaccagtaacgattggtcttgatca 1088

                                                                        
Query: 1089 tctagggaatgttttggtttccaacagataatgtacgtttttagtggtcgtcgtggttta 1148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1089 tctagggaatgttttggtttccaacagataatgtacgtttttagtggtcgtcgtggttta 1148

                                                                        
Query: 1149 cacatttgggtgtcggatagagccgcacaacatctaacaagagagaatcgtgcttcaatt 1208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1149 cacatttgggtgtcggatagagccgcacaacatctaacaagagagaatcgtgcttcaatt 1208

                                                                        
Query: 1209 ttaaatcatatcagagttgagttatctcaaaatcaaatcccaattcttaaacgttcattc 1268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1209 ttaaatcatatcagagttgagttatctcaaaatcaaatcccaattcttaaacgttcattc 1268

                                                                        
Query: 1269 gaccaaattctattaccacactttgaaaaatgcattatagaggaacaacaaattttcacc 1328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1269 gaccaaattctattaccacactttgaaaaatgcattatagaggaacaacaaattttcacc 1328

                                                                        
Query: 1329 aatgaaaaacaacgtaaaaactttttatcattattaccaatctcttacaagagacaagat 1388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1329 aatgaaaaacaacgtaaaaactttttatcattattaccaatctcttacaagagacaagat 1388

                                                                        
Query: 1389 agaaaaatccctttaacgccatctgaagatattgaaaagaaattaaaagaaattcaagat 1448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1389 agaaaaatccctttaacgccatctgaagatattgaaaagaaattaaaagaaattcaagat 1448

                                                                        
Query: 1449 gaaaatttatcaaactctgaaatttggttcgctgttaaatcttatctcgaagataataat 1508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1449 gaaaatttatcaaactctgaaatttggttcgctgttaaatcttatctcgaagataataat 1508

                                                                        
Query: 1509 ttaaaggaacatctctacaatttagttttccattatacaatgccaagaattgatgaacca 1568
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1509 ttaaaggaacatctctacaatttagttttccattatacaatgccaagaattgatgaacca 1568

                                                                        
Query: 1569 gtaacgattggtcttgatcatcttttgaaatctccattctgtatacaccctgatacaaag 1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1569 gtaacgattggtcttgatcatcttttgaaatctccattctgtatacaccctgatacaaag 1628

                                                                        
Query: 1629 aaactttgtgttcctttggatattaatgaaatttataaatttaatccaaatcaagttcca 1688
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1629 aaactttgtgttcctttggatattaatgaaatttataaatttaatccaaatcaagttcca 1688

                                                         
Query: 1689 acagttgatcaattaattaatgatccaaaattatttaacaaattt 1733
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1689 acagttgatcaattaattaatgatccaaaattatttaacaaattt 1733


>Contig-U16519-1 (Contig-U16519-1Q) /CSM_Contig/Contig-U16519-1Q.Seq.d
          Length = 856

 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 31/32 (96%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                          
Query: 21 tacaacaataataacaacaatcaataataata 52
          ||||||||||||||||||||| ||||||||||
Sbjct: 13 tacaacaataataacaacaat-aataataata 43


>Contig-U16518-1 (Contig-U16518-1Q) /CSM_Contig/Contig-U16518-1Q.Seq.d
          Length = 3854

 Score = 48.1 bits (24), Expect = 5e-05
 Identities = 31/32 (96%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                            
Query: 21   tacaacaataataacaacaatcaataataata 52
            ||||||||||||||||||||| ||||||||||
Sbjct: 2516 tacaacaataataacaacaat-aataataata 2546


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 47,751
Number of Sequences: 8402
Number of extensions: 47751
Number of successful extensions: 6214
Number of sequences better than 10.0: 281
length of query: 1840
length of database: 8,075,542
effective HSP length: 17
effective length of query: 1823
effective length of database: 7,932,708
effective search space: 14461326684
effective search space used: 14461326684
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)

Query= Contig-U15566-1 (Contig-U15566-1Q) /CSM_Contig/Contig-U15566-1Q.Seq.d
         (1840 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ411628) Dictyostelium discoideum cDNA clone:ddv5m05, 5' e...  1031   0.0    1
(BJ341608) Dictyostelium discoideum cDNA clone:dda7l12, 3' e...  1011   0.0    1
(BJ388476) Dictyostelium discoideum cDNA clone:dds9a23, 5' e...   965   0.0    1
(BJ429871) Dictyostelium discoideum cDNA clone:ddv5m05, 3' e...   920   0.0    1
(BJ400960) Dictyostelium discoideum cDNA clone:dds15h18, 3' ...   882   0.0    1
(BJ324666) Dictyostelium discoideum cDNA clone:dda7l12, 5' e...   842   0.0    1
(BJ400320) Dictyostelium discoideum cDNA clone:dds9a23, 3' e...   819   0.0    1
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    34   5e-05  19
(AM535697) Paracentrotus lividus EST, clone MPMGp1171L24211Q...    44   6e-04  2
(CP000939) Clostridium botulinum B1 str. Okra, complete genome.    42   0.001  19
(AM663699) Entamoeba moshkovskii FIC GSS, clone mosh022e06.q1k.    40   0.001  3
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    36   0.002  21
(AM673004) Entamoeba terrapinae GSS, clone terra248a07.q1k.        42   0.002  2
(AM657848) Entamoeba moshkovskii FIC GSS, clone mosh071e06.p1k.    40   0.003  2
(CP000246) Clostridium perfringens ATCC 13124, complete genome.    42   0.003  16
(AM664158) Entamoeba moshkovskii FIC GSS, clone mosh045b06.p1k.    40   0.003  2
(AM516895) Paracentrotus lividus EST, clone MPMGp1171P0335Q,...    40   0.006  2
(AM422018) Candidatus Phytoplasma australiense complete genome.    40   0.007  17
(AM646953) Entamoeba moshkovskii FIC GSS, clone mosh044h10.q1k.    40   0.008  2
(AM665833) Entamoeba terrapinae GSS, clone terra015e11.q1k.        40   0.010  2
(AM627559) Entamoeba dispar GSS, clone dispar23d06.q1k.            40   0.010  2
(AM628923) Entamoeba dispar GSS, clone dispar31c04.p1k.            40   0.011  2
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    38   0.020  20
(CD659658) EtESTef53f08.y1 Eimeria tenella M5-6 Excised cDNA...    40   0.025  2
(AM647766) Entamoeba moshkovskii FIC GSS, clone mosh053d12.p1k.    40   0.026  2
(AM660544) Entamoeba moshkovskii FIC GSS, clone mosh100b08.q1k.    40   0.034  2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   0.038  21
(AM633483) Entamoeba dispar GSS, clone dispar101f08.p1k.           40   0.039  2
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    34   0.059  20
(AE017244) Mycoplasma hyopneumoniae 7448, complete genome.         32   0.062  21
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    42   0.080  20
(AL844509) Plasmodium falciparum chromosome 13.                    36   0.10   17
(CP000312) Clostridium perfringens SM101, complete genome.         42   0.11   18
(CR382322) Zebrafish DNA sequence from clone DKEY-29D11 in l...    34   0.12   9
(CP000728) Clostridium botulinum F str. Langeland, complete ...    42   0.16   19
(CP000361) Arcobacter butzleri RM4018, complete genome.            34   0.19   22
(FF391168) MOOBW69TF MOO Vigna unguiculata cDNA 5', mRNA seq...    50   0.30   1
(AL049184) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    34   0.40   18
(AM687728) Entamoeba terrapinae GSS, clone terra237e12.p1k.        36   0.41   2
(AM550658) Paracentrotus lividus EST, clone MPMGp1172A09103Q...    40   0.48   2
(AM652728) Entamoeba moshkovskii FIC GSS, clone mosh120g08.q1k.    40   0.48   2
(AM536973) Paracentrotus lividus EST, clone MPMGp1171F1998Q,...    40   0.48   2
(AE014843) Plasmodium falciparum 3D7 chromosome 11 section 8...    30   0.59   17
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         40   0.62   18
(AM458329) Vitis vinifera contig VV78X275455.3, whole genome...    44   0.64   2
(BK006346) TPA_exp: Apis mellifera sex determination locus, ...    34   0.75   5
(CU959979) Brassica napus GSS, clone JBnB150A22, end read, p...    36   0.85   2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    34   0.91   15
(CP000047) Bacillus thuringiensis serovar konkukian str. 97-...    40   1.1    7
(CR753821) Zebrafish DNA sequence from clone CH211-176F1 in ...    48   1.2    1
(CR394523) Zebrafish DNA sequence from clone DKEY-56E24 in l...    48   1.2    1
(CR388030) Zebrafish DNA sequence from clone DKEY-39A2 in li...    48   1.2    1
(BX323829) Zebrafish DNA sequence from clone RP71-14B1 in li...    48   1.2    1
(AL935140) Zebrafish DNA sequence from clone DKEYP-122E7 in ...    48   1.2    1
(EF555519) Marmota himalayana clone W41 microsatellite seque...    48   1.2    1
(AM446059) Vitis vinifera contig VV78X074073.3, whole genome...    48   1.2    1
(CU062486) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   1.2    1
(AC216324) Pteropus vampyrus clone CH279-367G23, WORKING DRA...    48   1.2    1
(AC163591) Bos taurus clone CH240-130B15, WORKING DRAFT SEQU...    48   1.2    1
(AC013316) Homo sapiens chromosome 2 clone RP11-355M5 map 2,...    48   1.2    1
(EJ784205) 1093017302716 Global-Ocean-Sampling_GS-30-02-01-1...    48   1.2    1
(EJ563549) 1092959684602 Global-Ocean-Sampling_GS-29-01-01-1...    48   1.2    1
(EJ528548) 1092955204371 Global-Ocean-Sampling_GS-29-01-01-1...    48   1.2    1
(CT488613) A BAC library has been constructed from cultivar ...    48   1.2    1
(CC593150) CH240_394K24.T7 CHORI-240 Bos taurus genomic clon...    48   1.2    1
(BX153179) Danio rerio genomic clone DKEY-113O23, genomic su...    48   1.2    1
(AG377031) Mus musculus molossinus DNA, clone:MSMg01-184N24....    48   1.2    1
(DT769391) EST1203241 Aquilegia cDNA library Aquilegia formo...    48   1.2    1
(DT767224) EST1201073 Aquilegia cDNA library Aquilegia formo...    48   1.2    1
(BJ410341) Dictyostelium discoideum cDNA clone:ddv12l06, 5' ...    48   1.2    1
(EV742965) LB03454.C21_E14 GC_BGC-34 Bos taurus cDNA clone I...    48   1.2    1
(CD525396) kw15c04.y1 Strongyloides ratti PA female naive pA...    36   1.3    2
(AL476320) T. brucei sheared genomic DNA clone 187f02, rever...    36   1.3    2
(AL031745) Plasmodium falciparum DNA from MAL1P2.                  36   1.3    18
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    42   1.4    11
(AJ831594) Somabrachys aegrota mitochondrial tRNA-Leu (CUN) ...    40   1.4    3
(CW108404) 104_480_11097510_148_34498_029 Sorghum methylatio...    36   1.4    2
(BV425946) S237P6367RD10.T0 PortugueseWaterDog Canis familia...    44   1.5    2
(CW108403) 104_480_11097510_116_34494_029 Sorghum methylatio...    36   1.5    2
(AM604883) Entamoeba invadens IP1 GSS, clone inv042d06.p1k.        36   1.5    2
(AM477023) Vitis vinifera contig VV78X083699.3, whole genome...    44   1.5    2
(CW319717) 104_812_11474634_116_35889_073 Sorghum methylatio...    36   1.6    2
(AC128652) Homo sapiens 3 BAC RP11-20C6 (Roswell Park Cancer...    34   1.7    6
(AC114258) Dictyostelium discoideum chromosome 2 map complem...    32   1.7    6
(AE017243) Mycoplasma hyopneumoniae J, complete genome.            32   1.7    21
(EK014800) 1092955225678 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.8    2
(AM635896) Entamoeba dispar GSS, clone dispar21f05.p1k.            38   1.8    2
(AM670974) Entamoeba terrapinae GSS, clone terra179e01.q1k.        36   1.8    2
(AM544853) Paracentrotus lividus EST, clone MPMGp1171H03202Q...    36   1.8    2
(AM604474) Entamoeba invadens IP1 GSS, clone inv039g09.p1k.        36   1.8    2
(FC820229) Sr_pAMT7_017b13_T7 S. ratti mixed stage pAMP Stro...    36   1.8    2
(DX030440) KBrB026P07F KBrB, Brassica rapa BamHI BAC library...    36   1.8    2
(EK082796) 1092961117601 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.9    2
(EK503080) 1095505998710 Global-Ocean-Sampling_GS-32-01-01-1...    42   2.0    2
(AC216596) Populus trichocarpa clone POP019-I06, complete se...    38   2.1    5
(AC005505) Plasmodium falciparum chromosome 12 clone PFYAC18...    36   2.1    8
(EK462591) 1095469398425 Global-Ocean-Sampling_GS-32-01-01-1...    42   2.2    2
(ED517676) KBrB103D19F KBrB, Brassica rapa BamHI BAC library...    36   2.2    2
(CU013546) Zebrafish DNA sequence from clone CH211-163P9 in ...    32   2.4    2
(AM446296) Vitis vinifera contig VV78X118912.8, whole genome...    34   2.6    2
(AC004688) Plasmodium falciparum chromosome 12 clone PFYAC69...    34   2.7    11
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    34   2.7    21
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    34   2.9    16
(AC169179) Medicago truncatula chromosome 2 BAC clone mth2-3...    38   2.9    8
(AG278290) Mus musculus molossinus DNA, clone:MSMg01-048I20....    36   3.0    2
(BX233046) Danio rerio genomic clone DKEY-260N14, genomic su...    32   3.1    2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    36   3.2    12
(AL035476) Plasmodium falciparum MAL4P3.                           34   3.6    15
(BZ590937) 3590_1_80_1_G10.1EL_y_1 3590 - RescueMu Grid M Ze...    32   3.6    3
(AB084781) Mycoplasma mobile genes for P123, Gli349, Gli521,...    32   3.8    7
(CU896641) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   3.9    3
(EX836494) CBNB6423.rev CBNB Phycomyces blakesleeanus NRRL15...    34   4.3    3
(EC819172) SME00003687 esmbsro2 Sawyeria marylandensis cDNA,...    38   4.4    3
(CT737408) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   4.5    9
(AM647232) Entamoeba moshkovskii FIC GSS, clone mosh047g11.q1k.    42   4.5    2
(CP000743) Methanococcus aeolicus Nankai-3, complete genome.       36   4.6    23
(CR735130) Zebrafish DNA sequence from clone DKEY-206F21 in ...    46   4.7    1
(BX510941) Zebrafish DNA sequence from clone DKEY-155D18 in ...    46   4.7    1
(BC065317) Danio rerio pin2/trf1-interacting protein 1, mRNA...    46   4.7    1
(AY576808) Danio rerio hepatocellular carcinoma-related puta...    46   4.7    1
(AC160999) Mus musculus BAC clone RP23-58I16 from chromosome...    46   4.7    1
(AM435066) Vitis vinifera contig VV78X123389.7, whole genome...    46   4.7    1
(AC216413) Populus trichocarpa clone POP035-J17, complete se...    46   4.7    1
(EU432548) Philodina roseola guanylyl cyclase gene, complete...    46   4.7    1
(EU432547) Philodina roseola TAR protein gene, partial cds; ...    46   4.7    1
(AF071210) Spodoptera frugiperda casein kinase II alpha subu...    46   4.7    1
(AL591519) Human DNA sequence from clone RP11-160E20 on chro...    46   4.7    1
(AL390957) Human DNA sequence from clone RP11-417A21 on chro...    46   4.7    1
(AC113146) Homo sapiens chromosome 15, clone RP11-265N7, com...    46   4.7    1
(AC087878) Homo sapiens chromosome 15, clone RP11-62C7, comp...    46   4.7    1
(AC010884) Homo sapiens BAC clone RP11-350B7 from 2, complet...    46   4.7    1
(AC115129) Rattus norvegicus clone CH230-50F24, WORKING DRAF...    46   4.7    1
(CU993815) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   4.7    1
(AC062005) Homo sapiens chromosome 2 clone RP11-617O1 map 2,...    46   4.7    1
(CU463968) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   4.7    1
(CU207397) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   4.7    1
(AC205651) Ixodes scapularis chromosome unknown clone ISG1-5...    46   4.7    1
(AC182329) Myotis lucifugus clone CH235-338I14, WORKING DRAF...    46   4.7    1
(AC182328) Myotis lucifugus clone CH235-327E1, WORKING DRAFT...    46   4.7    1
(AC021568) Homo sapiens chromosome 8 clone RP11-796G1 map 8,...    46   4.7    1
(AQ628412) CITBI-E1-2656E14.TR CITBI-E1 Homo sapiens genomic...    46   4.7    1
(FH626995) CHO_OF4551xk19r1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   4.7    1
(FH626926) CHO_OF4551xk19f1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   4.7    1
(ER975332) MUGQ_CH252P295F21Sp6_CP460_091 CHORI-252 Vervet M...    46   4.7    1
(ER975254) MUGQ_CH252P295B21Sp6_CP460_095 CHORI-252 Vervet M...    46   4.7    1
(EK414656) 1095506145727 Global-Ocean-Sampling_GS-31-01-01-1...    46   4.7    1
(EK331235) 1095467024514 Global-Ocean-Sampling_GS-31-01-01-1...    46   4.7    1
(EK246223) 1095460258258 Global-Ocean-Sampling_GS-31-01-01-1...    46   4.7    1
(EJ172612) 1092344088487 Global-Ocean-Sampling_GS-27-01-01-1...    46   4.7    1
(ED205109) AUAC-aap06a09.b1 Ascaris suum whole genome shotgu...    46   4.7    1
(EH610024) FDR306-P00039-DEPE-R_B21 FDR306 Danio rerio cDNA ...    46   4.7    1
(EH481396) FDR103-P00067-DEPE-R_D04 FDR103 Danio rerio cDNA ...    46   4.7    1
(DY901507) SF9L09535 Spodoptera frugiperda cDNA Cell Line Li...    46   4.7    1
(CR851314) Normalized and Subtracted bovine endometrium tiss...    46   4.7    1
(CO815524) AGENCOURT_30337290 NIH_ZGC_8 Danio rerio cDNA clo...    46   4.7    1
(CO351645) DR_AOV_NRM04_F08 adult ovary normalized (TLL) Dan...    46   4.7    1
(CN772833) tae04a03.x1 Hydra EST Darmstadt I Hydra magnipapi...    46   4.7    1
(CB417279) STR00756 gastrula stage cDNA library Danio rerio ...    46   4.7    1
(FG226938) Aats04208 Antheraea assama fifth instar larval te...    46   4.7    1
(EX157677) DR_UNI_FL64_F07_R 5-week-old gonad (TLL) Danio re...    46   4.7    1
(EX156553) DR_UNI_FL39_G09_R adult ovary normalized (TLL) Da...    46   4.7    1
(EX838369) CBNB7412.rev CBNB Phycomyces blakesleeanus NRRL15...    34   5.0    3
(EX861065) CBNF5790.rev CBNF Phycomyces blakesleeanus NRRL15...    34   5.1    3
(BZ318963) hx51c02.g1 WGS-ZmaysF (JM107 adapted methyl filte...    32   5.1    3
(CP000768) Campylobacter jejuni subsp. doylei 269.97, comple...    36   5.1    21
(AM446392) Vitis vinifera contig VV78X176906.6, whole genome...    44   5.4    3
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    32   5.5    15
(AC180124) Strongylocentrotus purpuratus clone R3-4005K06, W...    34   6.0    7
(ER466445) 1092963925838 Global-Ocean-Sampling_GS-35-01-01-1...    36   6.1    3
(CU856617) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   6.4    4
(AF003086) Plasmodium falciparum transcription factor homolo...    36   6.6    4
(EJ446299) 1093015334934 Global-Ocean-Sampling_GS-28-01-01-1...    38   6.7    3
(AF267201) Candidatus Carsonella ruddii natural-host Bacteri...    34   6.7    3
(EH080536) PMECK31TR Perkinsus marinus large insert cDNA lib...    36   6.7    2
(BZ085709) llg01h06.b1 B.oleracea002 Brassica oleracea genom...    36   6.7    2
(AM628904) Entamoeba dispar GSS, clone dispar31b06.p1k.            36   6.7    2
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    34   6.8    18
(CP000727) Clostridium botulinum A str. Hall, complete genome.     42   7.0    19
(ED510563) KBrB093H13R KBrB, Brassica rapa BamHI BAC library...    36   7.3    2
(EJ215270) 1092351073328 Global-Ocean-Sampling_GS-27-01-01-1...    44   7.4    2
(AZ538602) ENTGE42TR Entamoeba histolytica Sheared DNA Entam...    36   7.4    2
(CX087122) EHACU85TR E. histolytica Normalized cDNA library ...    36   7.4    2
(EY687504) CS00-C2-003-046-F08-CT.F Sweet orange bark, green...    42   7.4    2
(CP000742) Methanococcus vannielii SB, complete genome.            38   7.4    19
(AZ534361) ENTBY02TR Entamoeba histolytica Sheared DNA Entam...    36   7.6    2
(AM643121) Entamoeba dispar GSS, clone dispar104b02.p1k.           36   7.6    2
(AM630066) Entamoeba dispar GSS, clone dispar4e06.q1k.             36   7.8    2
(EI933783) VUH2-78C1TR VUUBBa (VUH2) Vigna unguiculata genom...    36   7.8    2
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    32   8.0    16
(AI151078) qb48a06.x1 NCI_CGAP_Brn23 Homo sapiens cDNA clone...    28   8.0    4
(AC222535) Procavia capensis clone CH280-306F6, WORKING DRAF...    34   8.5    2
(AC213093) Zea mays chromosome 3 clone CH201-54D21; ZMMBBc00...    32   8.5    2
(AC182654) Populus trichocarpa clone Pop1-121D13, complete s...    32   8.8    2
(AM431127) Vitis vinifera contig VV78X089476.28, whole genom...    38   9.2    3
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    34   9.2    19
(Z68338) Caenorhabditis elegans Cosmid T24B8.                      34   9.4    2
(CT955973) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   9.7    8
(AC201035) Strongylocentrotus purpuratus clone R3-12K21, WOR...    34   9.7    4
(BH782381) fzmb011f008d02k0 fzmb filtered library Zea mays g...    32   9.8    3

>(BJ411628) Dictyostelium discoideum cDNA clone:ddv5m05, 5' end,
           single read.
          Length = 576

 Score = 1031 bits (520), Expect = 0.0
 Identities = 523/524 (99%)
 Strand = Plus / Plus


Query: 57  gatggaagatgaaattgatatagatttttcaaatgaaatctcaagacaagatgtattaca 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53  gatggaagatgaaattgatatagatttttcaaatgaaatctcaagacaagatgtattaca 112


Query: 117 attaagagaatattatgataaattatttccatttgatttattatatgattggttaacaat 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 attaagagaatattatgataaattatttccatttgatttattatatgattggttaacaat 172


Query: 177 aaatagtataaatgaaaaagaagaagataaaaagagagcatttgaaggaagagaattttc 236
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 173 aaatagtataaatgaaaaagaagaagataaaaagagagcatttgaaagaagagaattttc 232


Query: 237 agtaaggatcaataaagtatcttcatcatttgttattcgtaataaatcattcaatagagt 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 agtaaggatcaataaagtatcttcatcatttgttattcgtaataaatcattcaatagagt 292


Query: 297 tgaagatttaaaagaatttttaaaaggtagacaaaatattgatggtgtatatgaagtacc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tgaagatttaaaagaatttttaaaaggtagacaaaatattgatggtgtatatgaagtacc 352


Query: 357 agagagattagatattggacccatctgtagttgggaaccatctaaaaaggcaacagtttc 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 agagagattagatattggacccatctgtagttgggaaccatctaaaaaggcaacagtttc 412


Query: 417 agattaccaaccagtgtcaaaggaattggtattcgatattgatgttgatgattataatcc 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 agattaccaaccagtgtcaaaggaattggtattcgatattgatgttgatgattataatcc 472


Query: 477 aattcgtgtttgttgttcatcaacatcactatgtgaaaagtgttggggatttttagcagt 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aattcgtgtttgttgttcatcaacatcactatgtgaaaagtgttggggatttttagcagt 532


Query: 537 ttcagcagagtttatagataattatcttagggaatgttttggtt 580
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ttcagcagagtttatagataattatcttagggaatgttttggtt 576

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 2,259,829,516
Number of extensions: 141619706
Number of successful extensions: 12187386
Number of sequences better than 10.0: 201
Length of query: 1840
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1816
Effective length of database: 96,409,374,237
Effective search space: 175079423614392
Effective search space used: 175079423614392
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U15566-1 (Contig-U15566-1Q) /CSM_Contig/Contig-U15566-1Q.Seq.d
         (1840 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF403474_1(AF403474|pid:none) Euplotes crassus DNA primase catal...   164   8e-39
CR382128_437(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...   155   5e-36
AB072454_1(AB072454|pid:none) Coprinopsis cinerea mRNA for DNA p...   151   7e-35
AE017345_174(AE017345|pid:none) Cryptococcus neoformans var. neo...   151   7e-35
AM920435_407(AM920435|pid:none) Penicillium chrysogenum Wisconsi...   149   3e-34
AK223391_1(AK223391|pid:none) Homo sapiens mRNA for DNA primase ...   149   3e-34
CP000593_190(CP000593|pid:none) Ostreococcus lucimarinus CCE9901...   149   3e-34
(P49642) RecName: Full=DNA primase small subunit;          EC=2....   149   3e-34
BC153661_1(BC153661|pid:none) Danio rerio primase polypeptide 1,...   146   2e-33
AY900582_1(AY900582|pid:none) Monascus pilosus non-LTR retrotran...   145   4e-33
AM270361_2(AM270361|pid:none) Aspergillus niger contig An16c0090...   145   5e-33
CP000496_1023(CP000496|pid:none) Pichia stipitis CBS 6054 chromo...   145   6e-33
AK314866_1(AK314866|pid:none) Homo sapiens cDNA, FLJ95767, highl...   144   8e-33
BC049395_1(BC049395|pid:none) Xenopus laevis primase, polypeptid...   143   2e-32
AK133878_1(AK133878|pid:none) Mus musculus 8 days embryo whole b...   140   2e-31
(P20664) RecName: Full=DNA primase small subunit;          EC=2....   140   2e-31
CR382136_597(CR382136|pid:none) Debaryomyces hansenii strain CBS...   140   2e-31
A33269(A33269;D46642) DNA primase (EC 2.7.7.-) 46K chain - mouse...   140   2e-31
CU633865_191(CU633865|pid:none) Podospora anserina genomic DNA c...   138   8e-31
CR380958_408(CR380958|pid:none) Candida glabrata strain CBS138 c...   137   1e-30
(P10363) RecName: Full=DNA primase small subunit;          EC=2....   135   5e-30
Y00458_1(Y00458|pid:none) Yeast PRI1 gene for DNA primase.            133   2e-29
AM910994_676(AM910994|pid:none) Plasmodium knowlesi strain H chr...   133   2e-29
CU928176_644(CU928176|pid:none) Zygosaccharomyces rouxii strain ...   127   1e-27
CU928170_568(CU928170|pid:none) Kluyveromyces thermotolerans str...   127   1e-27
CR940348_116(CR940348|pid:none) Theileria annulata strain Ankara...   125   5e-27
(P34471) RecName: Full=DNA primase small subunit;          EC=2....   121   1e-25
AK341925_1(AK341925|pid:none) Acyrthosiphon pisum ACYPI008656 mR...   119   4e-25
AF100306_5(AF100306|pid:none) Caenorhabditis elegans cosmid T24C...   119   5e-25
AM502240_38(AM502240|pid:none) Leishmania infantum chromosome 22.     112   6e-23
CT005261_39(CT005261|pid:none) Leishmania major strain Friedlin,...   111   8e-23
AC159413_16(AC159413|pid:none) Trypanosoma brucei chromosome 7 c...   110   2e-22
AC104272_11(AC104272|pid:none) Oryza sativa (japonica cultivar-g...    72   7e-11
U89689_1(U89689|pid:none) Human DNA primase 1 (PRIM1) gene, part...    57   2e-06
(Q5V554) RecName: Full=Probable DNA primase small subunit;      ...    57   3e-06
(Q6L0W5) RecName: Full=Probable DNA primase small subunit;      ...    50   2e-04
(Q2NI23) RecName: Full=Probable DNA primase small subunit;      ...    46   0.005
(Q18GR9) RecName: Full=Probable DNA primase small subunit;      ...    45   0.012
AE004437_1130(AE004437|pid:none) Halobacterium sp. NRC-1, comple...    44   0.026
(B0R5P1) RecName: Full=Probable DNA primase small subunit;      ...    44   0.026
CP001140_1417(CP001140|pid:none) Desulfurococcus kamchatkensis 1...    41   0.13
(A4WLS1) RecName: Full=Probable DNA primase small subunit;      ...    41   0.17
(Q5JJ72) RecName: Full=Probable DNA primase small subunit;      ...    41   0.17
(B1YAF6) RecName: Full=Probable DNA primase small subunit;      ...    40   0.38
CP000923_199(CP000923|pid:none) Thermoanaerobacter sp. X514, com...    39   0.49
CP000924_1961(CP000924|pid:none) Thermoanaerobacter pseudethanol...    39   0.49
(B6YV39) RecName: Full=Probable DNA primase small subunit;      ...    39   0.64
(Q9V292) RecName: Full=DNA primase small subunit;          EC=2....    39   0.84
AL844506_234(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.84
CP000505_616(CP000505|pid:none) Thermofilum pendens Hrk 5, compl...    38   1.1
AE014188_440(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    38   1.4
(O29516) RecName: Full=Probable DNA primase small subunit;      ...    37   1.9
AE000782_730(AE000782|pid:none) Archaeoglobus fulgidus DSM 4304,...    37   1.9
(A3MUU9) RecName: Full=Probable DNA primase small subunit;      ...    37   2.4
(O57934) RecName: Full=DNA primase small subunit;          EC=2....    37   2.4
EU780426_16(EU780426|pid:none) Spodoptera litura nucleopolyhedro...    37   3.2
AL844505_89(AL844505|pid:none) Plasmodium falciparum 3D7 chromos...    37   3.2
CP000728_440(CP000728|pid:none) Clostridium botulinum F str. Lan...    36   4.1
CP000562_2038(CP000562|pid:none) Methanoculleus marisnigri JR1, ...    36   4.1
CP001338_909(CP001338|pid:none) Candidatus Methanosphaerula palu...    36   4.1
(Q3IP66) RecName: Full=Probable DNA primase small subunit;      ...    36   4.1
(O27986) RecName: Full=Uncharacterized DNA primase small subunit...    36   5.4
CP000383_2898(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334...    35   7.1
CP000743_871(CP000743|pid:none) Methanococcus aeolicus Nankai-3,...    35   7.1
CP000609_236(CP000609|pid:none) Methanococcus maripaludis C5, co...    35   9.2
CP000013_70(CP000013|pid:none) Borrelia garinii PBi, complete ge...    35   9.2

>AF403474_1(AF403474|pid:none) Euplotes crassus DNA primase catalytic
            subunit p48 mRNA, complete cds.
          Length = 441

 Score =  164 bits (416), Expect = 8e-39
 Identities = 109/361 (30%), Positives = 179/361 (49%), Gaps = 16/361 (4%)
 Frame = +1

Query: 58   MEDEIDIDFSNEISRQDVLQLREYYDKLFPFDLLYDWLTINSINEKEED---KKRAFEGR 228
            ME+E+ ID   EI     L L++Y++ LFP   +YDWLT      K+ +   K   F  R
Sbjct: 1    MEEEMAIDTHGEIEFSIEL-LKKYFELLFPSKGMYDWLTYYQPEMKDTEGKPKSDYFYRR 59

Query: 229  EFSVRINKVSSSFVIRNKSFNRVEDLKEFLKGRQNIDGVYEVPERLDIGPICSWEPSKKA 408
            EFS  +        +R   F   E+ K+ L        + + PE++DIG + +  P   +
Sbjct: 60   EFSFTLE---DGIYVRYNCFKNEEEFKQTL--------IEKSPEKIDIGAVFNMPPKNHS 108

Query: 409  TVSD--YQPVSKELVFDIDVDDYNPIRVCCSSTSLCEKCWGFLAVSAEFIDNYLRECFGX 582
            +V    + P  KELVFDID+ DY+ +R CC   ++C KCW F++++ + ID  +
Sbjct: 109  SVESRAFIPQEKELVFDIDMTDYDDVRTCCEGANVCLKCWRFMSIATKIIDKAM------ 162

Query: 583  XXXRECFGFQQIMYVFSGRRGLHIWVSDRAAQHLTRENRASILNHIRVELSQNQ------ 744
               RE FG++ +++VFSGRRG+H WV D + + LT E R++I N++ V +
Sbjct: 163  ---REDFGYKHLLWVFSGRRGVHCWVCDPSTRKLTNEARSAIANYLTVHVGNEMGSTTAK 219

Query: 745  -----IPILKRSFDQILLPHFEKCIIEEQQIFTNEKQRKNFLSLLPISYKRQDRKITLTP 909
                  P + R+ D I+   F   ++  Q I + E+QRK  + +LP    R   K
Sbjct: 220  IDFVAHPAISRAKD-IIKEEFTDIMMRGQNILSKEEQRKKLIEMLPEEEVRNHLKTNWDR 278

Query: 910  SEDIEKKLKEIQDENLSNSEIWFAVKSYLEDNNLKEHLYNLVFHYTMPRIDEPVTIGLDH 1089
              D E +   ++  N+  +EI       L  +   +++ + +  +  PRID  V+ G++H
Sbjct: 279  YTDYEDQENSVKLWNIF-TEIAGDKGGKLRKSYRTDYVTSAMITFLYPRIDANVSKGINH 337

Query: 1090 L 1092
            L
Sbjct: 338  L 338

 Score =  120 bits (302), Expect = 1e-25
 Identities = 70/218 (32%), Positives = 117/218 (53%), Gaps = 11/218 (5%)
 Frame = +3

Query: 1092 RECFGFQQIMYVFSGRRGLHIWVSDRAAQHLTRENRASILNHIRVELSQNQ--------- 1244
            RE FG++ +++VFSGRRG+H WV D + + LT E R++I N++ V +
Sbjct: 163  REDFGYKHLLWVFSGRRGVHCWVCDPSTRKLTNEARSAIANYLTVHVGNEMGSTTAKIDF 222

Query: 1245 --IPILKRSFDQILLPHFEKCIIEEQQIFTNEKQRKNFLSLLPISYKRQDRKIPLTPSED 1418
               P + R+ D I+   F   ++  Q I + E+QRK  + +LP    R   K       D
Sbjct: 223  VAHPAISRAKD-IIKEEFTDIMMRGQNILSKEEQRKKLIEMLPEEEVRNHLKTNWDRYTD 281

Query: 1419 IEKKLKEIQDENLSNSEIWFAVKSYLEDNNLKEHLYNLVFHYTMPRIDEPVTIGLDHLLK 1598
             E +   ++  N+  +EI       L  +   +++ + +  +  PRID  V+ G++HLLK
Sbjct: 282  YEDQENSVKLWNIF-TEIAGDKGGKLRKSYRTDYVTSAMITFLYPRIDANVSKGINHLLK 340

Query: 1599 SPFCIHPDTKKLCVPLDINEIYKFNPNQVPTVDQLIND 1712
            SPFC+HP T K+CVP D +++ +F+P   PT+   +N+
Sbjct: 341  SPFCVHPKTGKICVPFDPSKVDEFDPCNCPTLLNAMNE 378

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,630,898,276
Number of extensions: 51703881
Number of successful extensions: 139394
Number of sequences better than 10.0: 66
Number of HSP's gapped: 139153
Number of HSP's successfully gapped: 116
Length of query: 613
Length of database: 1,051,180,864
Length adjustment: 135
Effective length of query: 478
Effective length of database: 614,245,399
Effective search space: 293609300722
Effective search space used: 293609300722
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

 psg: 0.92  gvh: 0.37  alm: 0.45  top: 0.13  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.13  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U15566-1 is nuc