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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15562-1
Contig ID Contig-U15562-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15562-1 (Contig-U15562-1Q) /CSM_Contig/Contig-U15562-1Q.Seq.d
CACTGTTGGCCTACTGGATAATACAAACACACTCACTTCCATCATTTAGG
GAATTATAATTTTTTATTTCTATAGGATTTAATAGATAATATAATAGATA
AAATAACAGATAATAGATTTAAGCAAAAAAAAAAGCAATAAAAACTAATA
TGTCAAATGATAATAGGGTAAATATTAATAATTTTTCAAGTATGAATGGN
GGTGGNGGNGGTTCAGATATTCAATTTCCTTTAAAACCATCGCAACANCA
ACAACAACAACAACAAAATTNTATAAATCAAAGTNCAATTAGAACATTAG
AGATTNCACAAGAATTAAGATATGAGATTGATTTTGACCAAAATGGTTGG
ATGAAATTAATTGAAGGTNCAGCAGAATGTTTTGGTNCGGAATTATCATT
AAATAAAGTTTATAAATTGTCAGGTACAAAGGGTGCAGTTTTTACATGGA
CAGGTTGCAAGATAGAGATAACTAATAATTGTCAACCTTATATTGGGGAG
AAAACTCCAATGCCACAATACGCAGGAGTATATCAAGAATTGGATGCATT
TAGAGTTAGCATATTGGACGAACCAAAAAAGAGTGGTCCACGTGTTATAA
TTGTCGGTCCTACCGATAGTGGGAAATCGTCACTCTCAAAGATACTTTTA
GCCTACAGTGCCCGATCAGGCTATCAACCATTATTTGTTGATTTAGACCC
TGGTCAAGGTTCAATCACCATACCAGGCACAATTTCAGCAGCACATATTC
AAAATCCATTGGATATCGAGGAGGGGTTAGCTGGTGGGATTCCATTGGCT
CATTTCTATGGTCACACTTCATTGGATGTGAATCCTGATCTCTTTAAAGC
ACTTTGTAAAAATTTAGCATCATTTATCGATAAACAATTAGACAGTTATT
AAATAAAGTTTATAAATTGTCAGGTACAAAGGGTGCAGTTTTTACATGGA
CAGGTTGCAAGATAGAGATAACTAATAATTGTCAACCTTATATTGGGGAG
AAAACTCCAATGCCACAATACGCAGGAGTATATCAAGAATTGGATGCATT
TAGAGTTAGCATATTGGACGAACCAAAAAAGAGTGGTCCACGTGTTATAA
TTGTCGGTCCTACCGATAGTGGGAAATCGTCACTCTCAAAGATACTTTTA
GCCTACAGTGCCCGATCAGGCTATCAACCATTATTTGTTGATTTAGACCC
TGGTCAAGGTTCAATCACCATACCAGGCACAATTTCAGCAGCACATATTC
AAAATCCATTGGATATCGAGGAGGGGTTAGCTGGTGGGATTCCATTGGCT
CATTTCTATGGTCACACTTCATTGGATGTGAATCCTGATCTCTTTAAAGC
ACTTTGTAAAAATTTAGCATCATTTATCGATAAACAATTAGACAGTT---
-------GACAGTTCAAACATTTCAAGAATCTCTGGTTTCATTGCAAATA
CTTGTGGTTGGATAGATGGTTTAGGTTATAAAATACTCTTACAAAATATT
GATGTCTTTAAAGCAAACTTAATCATTGTTATGGATAATGAAAAACTTTA
TAGTGATATCAGTTCTCATTATTCTCAAAAAGATAATTCAATTAAAATTA
TAAAATTACCAAAATCTGGTGGTGTATTTATAAGACCACCAGTATTTAGA
AAAAAAACAAGAATGAATAGAATAAAAGAATATTTTAATGGTATAAACGA
TAATTTATCACCACATTATATAGTATTAGATTTTAAAGATGTTAGTATTT
ATAGAACTGGTGGTGGTCCTGCTGCACCAGCTTCAGCATTACCAATTGGT
ACTTCATCTCAAATTGATCCACTTCAAATCACTGAAGTTTATCCTAGTTT
AGATATGTGTCATTCAATATTTGCAATCTCTTATGCAAAACAAGCTTCAA
ATATTTTTCATTCAAATGTTGCTGGTTTCCTTTATGTTTCTGATATCGAT
ATGGAAACAAAGAAAATTACAGTTATTTCACCAGCACCGGGGCCNCNTCC
TTCAAGATTTTTACTTTTAGGCNCATTAAAATGGGATGGAAAATTAAAAT
TAAAAAAAAAAAAATTAAATAAACAAAATAAAATAATAACAATAAGAACA
TGTATTTTAAAA
Gap gap included
Contig length 2102
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 3336736
End point 3335458
Strand (PLUS/MINUS) MINUS
Number of clones 5
Number of EST 11
Link to clone list U15562
List of clone(s) 

est1=SFE282F,1,202
est2=AFD223F,18,528
est3=SFF647F,20,199
est4=AFG268F,29,555
est5=VFH348F,35,190
est6=AFD223X,398,1397
est7=SFE282Z,1398,1934
est8=AFG268Z,1424,2100
est9=SFF647Z,1456,2101
est10=VFH348Z,1457,1984
est11=AFD223Z,1585,2067
Translated Amino Acid sequence 
tvglldntntltsii*giiifyfyri**ii**ik*qiidlskkksnkn*yvk***gky**
ffkyewxwxxfrysisfktiatxtttttkxykskxn*nirdxtriki*d*f*pkwldein
*rxsrmfwxgiiik*sl*ivrykgcsfymdrlqdrdn**lstlywgensnatirrsisri
gci*s*higrtkkewstcyncrsyr*weivtlkdtfslqcpirlstiic*frpwsrfnhh
trhnfsstysksigyrggvswwdsigsflwshfigces*sl*stl*kfsiiyr*TIRQLL
NKVYKLSGTKGAVFTWTGCKIEITNNCQPYIGEKTPMPQYAGVYQELDAFRVSILDEPKK
SGPRVIIVGPTDSGKSSLSKILLAYSARSGYQPLFVDLDPGQGSITIPGTISAAHIQNPL
DIEEGLAGGIPLAHFYGHTSLDVNPDLFKALCKNLASFIDKQLDS---

---DSSNISRISGFIANTCGWIDGLGYKILLQNIDVFKANLIIVMDNEKLYSDISSHYSQ
KDNSIKIIKLPKSGGVFIRPPVFRKKTRMNRIKEYFNGINDNLSPHYIVLDFKDVSIYRT
GGGPAAPASALPIGTSSQIDPLQITEVYPSLDMCHSIFAISYAKQASNIFHSNVAGFLYV
SDIDMETKKITVISPAPGPXPSRFLLLGXLKWDGKLKLKKKKLNKQNKIITIRTCILK
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptg*ykhthfhhlgnynflfl*dlidniidkitdnrfkqkkkq*klicqmiig*ili
ifqv*mxvxxvqifnfl*nhrnxnnnnnkix*ikvqleh*rxhkn*dmrliltkmvg*n*
lkvqqnvlvrnyh*ikfincqvqrvqflhgqvar*r*liivnlilgrklqchntqeyikn
wmhlelaywtnqkrvvhvl*lsvlpivgnrhsqryf*ptvpdqainhylli*tlvkvqsp
yqaqfqqhifkihwisrrg*lvgfhwlismvtlhwm*ilislkhfvki*hhlsinn*tvi
k*sl*ivrykgcsfymdrlqdrdn**lstlywgensnatirrsisrigci*s*higrtkk
ewstcyncrsyr*weivtlkdtfslqcpirlstiic*frpwsrfnhhtrhnfsstysksi
gyrggvswwdsigsflwshfigces*sl*stl*kfsiiyr*tirq---

---DSSNISRISGFIANTCGWIDGLGYKILLQNIDVFKANLIIVMDNEKLYSDISSHYSQ
KDNSIKIIKLPKSGGVFIRPPVFRKKTRMNRIKEYFNGINDNLSPHYIVLDFKDVSIYRT
GGGPAAPASALPIGTSSQIDPLQITEVYPSLDMCHSIFAISYAKQASNIFHSNVAGFLYV
SDIDMETKKITVISPAPGPXPSRFLLLGXLKWDGKLKLKKKKLNKQNKIITIRTCILK

Frame B:
tvglldntntltsii*giiifyfyri**ii**ik*qiidlskkksnkn*yvk***gky**
ffkyewxwxxfrysisfktiatxtttttkxykskxn*nirdxtriki*d*f*pkwldein
*rxsrmfwxgiiik*sl*ivrykgcsfymdrlqdrdn**lstlywgensnatirrsisri
gci*s*higrtkkewstcyncrsyr*weivtlkdtfslqcpirlstiic*frpwsrfnhh
trhnfsstysksigyrggvswwdsigsflwshfigces*sl*stl*kfsiiyr*TIRQLL
NKVYKLSGTKGAVFTWTGCKIEITNNCQPYIGEKTPMPQYAGVYQELDAFRVSILDEPKK
SGPRVIIVGPTDSGKSSLSKILLAYSARSGYQPLFVDLDPGQGSITIPGTISAAHIQNPL
DIEEGLAGGIPLAHFYGHTSLDVNPDLFKALCKNLASFIDKQLDS---

---tvqtfqeslvslqilvvg*mv*vikysykilmslkqt*sllwimknfivisvliilk
kiiqlkl*nyqnlvvyl*dhqylekkqe*ie*knilmv*tiiyhhii*y*ilkmlvfiel
vvvllhqlqhyqlvlhlklihfkslkfilv*icviqylqslmqnklqiffiqmllvsfmf
lisiwkqrklqlfhqhrgxxlqdfyf*ah*ngmen*n*kkkn*inkik**q*ehvf*

Frame C:
llaywiiqthslpsfrel*ffisigfnr*ynr*nnr**i*akkkaiktnmsndnrvninn
fssmngggggsdiqfplkpsqxqqqqqqnxinqsxirtleixqelryeidfdqngwmkli
egxaecfgxelslnkvyklsgtkgavftwtgckieitnncqpyigektpmpqyagvyqel
dafrvsildepkksgprviivgptdsgksslskillaysarsgyqplfvdldpgqgsiti
pgtisaahiqnpldieeglaggiplahfyghtsldvnpdlfkalcknlasfidkqldsy*
ikfincqvqrvqflhgqvar*r*liivnlilgrklqchntqeyiknwmhlelaywtnqkr
vvhvl*lsvlpivgnrhsqryf*ptvpdqainhylli*tlvkvqspyqaqfqqhifkihw
isrrg*lvgfhwlismvtlhwm*ilislkhfvki*hhlsinn*tv---

---qfkhfknlwfhckylwldrwfrl*ntltky*cl*sklnhcyg**ktl**yqfslfsk
r*fn*nykitkiwwciykttsi*kknkne*nkrif*wykr*fittlysirf*rc*yl*nw
wwscctsfsitnwyfisn*stsnh*sls*fryvsfnicnllcktsfkyfsfkccwfplcf
*yrygnkenysyftstgaxsfkiftfrxikmgwkikikkkkik*tk*nnnnknmyfk
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15562-1 (Contig-U15562-1Q)
/CSM_Contig/Contig-U15562-1Q.Seq.d
         (2112 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15562-1 (Contig-U15562-1Q) /CSM_Contig/Conti...  3384  0.0
Contig-U15579-1 (Contig-U15579-1Q) /CSM_Contig/Conti...    44  9e-04
Contig-U10297-1 (Contig-U10297-1Q) /CSM_Contig/Conti...    44  9e-04
Contig-U15330-1 (Contig-U15330-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U11648-1 (Contig-U11648-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U09710-1 (Contig-U09710-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U01260-1 (Contig-U01260-1Q) /CSM_Contig/Conti...    42  0.003
Contig-U16561-1 (Contig-U16561-1Q) /CSM_Contig/Conti...    40  0.014
Contig-U16560-1 (Contig-U16560-1Q) /CSM_Contig/Conti...    40  0.014
Contig-U16221-1 (Contig-U16221-1Q) /CSM_Contig/Conti...    40  0.014

>Contig-U15562-1 (Contig-U15562-1Q) /CSM_Contig/Contig-U15562-1Q.Seq.d
          Length = 2112

 Score = 3384 bits (1707), Expect = 0.0
 Identities = 1777/1785 (99%)
 Strand = Plus / Plus

                                                                        
Query: 267  aattntataaatcaaagtncaattagaacattagagattncacaagaattaagatatgag 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267  aattntataaatcaaagtncaattagaacattagagattncacaagaattaagatatgag 326

                                                                        
Query: 327  attgattttgaccaaaatggttggatgaaattaattgaaggtncagcagaatgttttggt 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327  attgattttgaccaaaatggttggatgaaattaattgaaggtncagcagaatgttttggt 386

                                                                        
Query: 387  ncggaattatcattaaataaagtttataaattgtcaggtacaaagggtgcagtttttaca 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387  ncggaattatcattaaataaagtttataaattgtcaggtacaaagggtgcagtttttaca 446

                                                                        
Query: 447  tggacaggttgcaagatagagataactaataattgtcaaccttatattggggagaaaact 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447  tggacaggttgcaagatagagataactaataattgtcaaccttatattggggagaaaact 506

                                                                        
Query: 507  ccaatgccacaatacgcaggagtatatcaagaattggatgcatttagagttagcatattg 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507  ccaatgccacaatacgcaggagtatatcaagaattggatgcatttagagttagcatattg 566

                                                                        
Query: 567  gacgaaccaaaaaagagtggtccacgtgttataattgtcggtcctaccgatagtgggaaa 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567  gacgaaccaaaaaagagtggtccacgtgttataattgtcggtcctaccgatagtgggaaa 626

                                                                        
Query: 627  tcgtcactctcaaagatacttttagcctacagtgcccgatcaggctatcaaccattattt 686
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627  tcgtcactctcaaagatacttttagcctacagtgcccgatcaggctatcaaccattattt 686

                                                                        
Query: 687  gttgatttagaccctggtcaaggttcaatcaccataccaggcacaatttcagcagcacat 746
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687  gttgatttagaccctggtcaaggttcaatcaccataccaggcacaatttcagcagcacat 746

                                                                        
Query: 747  attcaaaatccattggatatcgaggaggggttagctggtgggattccattggctcatttc 806
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747  attcaaaatccattggatatcgaggaggggttagctggtgggattccattggctcatttc 806

                                                                        
Query: 807  tatggtcacacttcattggatgtgaatcctgatctctttaaagcactttgtaaaaattta 866
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807  tatggtcacacttcattggatgtgaatcctgatctctttaaagcactttgtaaaaattta 866

                                                                        
Query: 867  gcatcatttatcgataaacaattagacagttattaaataaagtttataaattgtcaggta 926
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867  gcatcatttatcgataaacaattagacagttattaaataaagtttataaattgtcaggta 926

                                                                        
Query: 927  caaagggtgcagtttttacatggacaggttgcaagatagagataactaataattgtcaac 986
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927  caaagggtgcagtttttacatggacaggttgcaagatagagataactaataattgtcaac 986

                                                                        
Query: 987  cttatattggggagaaaactccaatgccacaatacgcaggagtatatcaagaattggatg 1046
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987  cttatattggggagaaaactccaatgccacaatacgcaggagtatatcaagaattggatg 1046

                                                                        
Query: 1047 catttagagttagcatattggacgaaccaaaaaagagtggtccacgtgttataattgtcg 1106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 catttagagttagcatattggacgaaccaaaaaagagtggtccacgtgttataattgtcg 1106

                                                                        
Query: 1107 gtcctaccgatagtgggaaatcgtcactctcaaagatacttttagcctacagtgcccgat 1166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 gtcctaccgatagtgggaaatcgtcactctcaaagatacttttagcctacagtgcccgat 1166

                                                                        
Query: 1167 caggctatcaaccattatttgttgatttagaccctggtcaaggttcaatcaccataccag 1226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 caggctatcaaccattatttgttgatttagaccctggtcaaggttcaatcaccataccag 1226

                                                                        
Query: 1227 gcacaatttcagcagcacatattcaaaatccattggatatcgaggaggggttagctggtg 1286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1227 gcacaatttcagcagcacatattcaaaatccattggatatcgaggaggggttagctggtg 1286

                                                                        
Query: 1287 ggattccattggctcatttctatggtcacacttcattggatgtgaatcctgatctcttta 1346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1287 ggattccattggctcatttctatggtcacacttcattggatgtgaatcctgatctcttta 1346

                                                                        
Query: 1347 aagcactttgtaaaaatttagcatcatttatcgataaacaattagacagttnnnnnnnnn 1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1347 aagcactttgtaaaaatttagcatcatttatcgataaacaattagacagttnnnnnnnnn 1406

                                                                        
Query: 1407 ngacagttcaaacatttcaagaatctctggtttcattgcaaatacttgtggttggataga 1466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1407 ngacagttcaaacatttcaagaatctctggtttcattgcaaatacttgtggttggataga 1466

                                                                        
Query: 1467 tggtttaggttataaaatactcttacaaaatattgatgtctttaaagcaaacttaatcat 1526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1467 tggtttaggttataaaatactcttacaaaatattgatgtctttaaagcaaacttaatcat 1526

                                                                        
Query: 1527 tgttatggataatgaaaaactttatagtgatatcagttctcattattctcaaaaagataa 1586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1527 tgttatggataatgaaaaactttatagtgatatcagttctcattattctcaaaaagataa 1586

                                                                        
Query: 1587 ttcaattaaaattataaaattaccaaaatctggtggtgtatttataagaccaccagtatt 1646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1587 ttcaattaaaattataaaattaccaaaatctggtggtgtatttataagaccaccagtatt 1646

                                                                        
Query: 1647 tagnnnnnnnncaagaatgaatagaataaaagaatattttaatggtataaacgataattt 1706
            |||        |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1647 tagaaaaaaaacaagaatgaatagaataaaagaatattttaatggtataaacgataattt 1706

                                                                        
Query: 1707 atcaccacattatatagtattagattttaaagatgttagtatttatagaactggtggtgg 1766
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1707 atcaccacattatatagtattagattttaaagatgttagtatttatagaactggtggtgg 1766

                                                                        
Query: 1767 tcctgctgcaccagcttcagcattaccaattggtacttcatctcaaattgatccacttca 1826
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1767 tcctgctgcaccagcttcagcattaccaattggtacttcatctcaaattgatccacttca 1826

                                                                        
Query: 1827 aatcactgaagtttatcctagtttagatatgtgtcattcaatatttgcaatctcttatgc 1886
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1827 aatcactgaagtttatcctagtttagatatgtgtcattcaatatttgcaatctcttatgc 1886

                                                                        
Query: 1887 aaaacaagcttcaaatatttttcattcaaatgttgctggtttcctttatgtttctgatat 1946
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1887 aaaacaagcttcaaatatttttcattcaaatgttgctggtttcctttatgtttctgatat 1946

                                                                        
Query: 1947 cgatatggaaacaaagaaaattacagttatttcaccagcaccggggccncntccttcaag 2006
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1947 cgatatggaaacaaagaaaattacagttatttcaccagcaccggggccncntccttcaag 2006

                                                         
Query: 2007 atttttacttttaggcncattaaaatgggatggaaaattaaaatt 2051
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2007 atttttacttttaggcncattaaaatgggatggaaaattaaaatt 2051


 Score =  196 bits (99), Expect = 1e-49
 Identities = 108/108 (100%)
 Strand = Plus / Plus

                                                                       
Query: 135 gcaataaaaactaatatgtcaaatgataatagggtaaatattaataatttttcaagtatg 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 gcaataaaaactaatatgtcaaatgataatagggtaaatattaataatttttcaagtatg 194

                                                           
Query: 195 aatggnggtggnggnggttcagatattcaatttcctttaaaaccatcg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 aatggnggtggnggnggttcagatattcaatttcctttaaaaccatcg 242


 Score =  139 bits (70), Expect = 2e-32
 Identities = 70/70 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  cactgttggcctactggataatacaaacacactcacttccatcatttagggaattataat 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  cactgttggcctactggataatacaaacacactcacttccatcatttagggaattataat 60

                    
Query: 61 tttttatttc 70
          ||||||||||
Sbjct: 61 tttttatttc 70


 Score = 95.6 bits (48), Expect = 3e-19
 Identities = 48/48 (100%)
 Strand = Plus / Plus

                                                            
Query: 2065 ttaaataaacaaaataaaataataacaataagaacatgtattttaaaa 2112
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2065 ttaaataaacaaaataaaataataacaataagaacatgtattttaaaa 2112


>Contig-U15579-1 (Contig-U15579-1Q) /CSM_Contig/Contig-U15579-1Q.Seq.d
          Length = 3080

 Score = 44.1 bits (22), Expect = 9e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  cactgttggcctactggataat 22
          ||||||||||||||||||||||
Sbjct: 1  cactgttggcctactggataat 22


>Contig-U10297-1 (Contig-U10297-1Q) /CSM_Contig/Contig-U10297-1Q.Seq.d
          Length = 747

 Score = 44.1 bits (22), Expect = 9e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  cactgttggcctactggataat 22
          ||||||||||||||||||||||
Sbjct: 1  cactgttggcctactggataat 22


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 40,014
Number of Sequences: 8402
Number of extensions: 40014
Number of successful extensions: 5708
Number of sequences better than 10.0: 797
length of query: 2112
length of database: 8,075,542
effective HSP length: 17
effective length of query: 2095
effective length of database: 7,932,708
effective search space: 16619023260
effective search space used: 16619023260
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 2. 1
Homology vs DNA 
Query= Contig-U15562-1 (Contig-U15562-1Q) /CSM_Contig/Contig-U15562-1Q.Seq.d
         (2112 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ400328) Dictyostelium discoideum cDNA clone:dds9c22, 3' e...   569   0.0    2
(BJ342349) Dictyostelium discoideum cDNA clone:dda13g18, 3' ...   617   0.0    2
(BJ431763) Dictyostelium discoideum cDNA clone:ddv15p11, 3' ...   654   0.0    2
(BJ398431) Dictyostelium discoideum cDNA clone:dds12m12, 3' ...   494   0.0    3
(BJ341558) Dictyostelium discoideum cDNA clone:dda7m06, 3' e...   644   0.0    2
(BJ325269) Dictyostelium discoideum cDNA clone:dda13g18, 5' ...   537   0.0    3
(BJ324619) Dictyostelium discoideum cDNA clone:dda7m06, 5' e...   458   e-167  4
(BJ388483) Dictyostelium discoideum cDNA clone:dds9c22, 5' e...   101   6e-35  2
(BJ387116) Dictyostelium discoideum cDNA clone:dds12m12, 5' ...   107   2e-25  2
(BJ413414) Dictyostelium discoideum cDNA clone:ddv15p11, 5' ...    90   4e-13  1
(CJ485710) Macaca fascicularis mRNA, clone: QtsA-13307, 5' e...    38   0.17   2
(AL844507) Plasmodium falciparum chromosome 8.                     50   0.34   1
(CJ458385) Macaca fascicularis mRNA, clone: QmoA-10367, 5' e...    50   0.34   1
(BD452947) Diagnosis of Diseases Associated with tumor suppr...    38   1.2    4
(AX251426) Sequence 394 from Patent WO0168912.                     38   1.2    4
(FP085558) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   1.4    1
(DC242495) Petunia x hybrida cDNA, clone: PET04SEQ06004D.          48   1.4    1
(CI208489) Oryza sativa Japonica Group cDNA, clone: 038-M026...    48   1.4    1
(EY388086) CAXA7110.fwd CAXA Helobdella robusta Subtracted L...    48   1.4    1
(EY328383) CAWY1541.fwd CAWY Helobdella robusta Subtracted E...    48   1.4    1
(DH366422) Oryzias latipes Fosmid clone:GOLWFno749_k12, reve...    36   1.4    2
(BJ387912) Dictyostelium discoideum cDNA clone:dds5c22, 5' e...    38   1.4    2
(CR954195) Medicago truncatula chromosome 5 clone mth2-16p13...    34   1.7    10
(AC232775) Solanum lycopersicum chromosome 2 clone C02SLe006...    38   2.3    5
(CJ450105) Macaca fascicularis mRNA, clone: QflA-15649, 5' e...    42   2.4    2
(BJ326656) Dictyostelium discoideum cDNA clone:dda17o07, 5' ...    40   2.7    3
(CR339059) Zebrafish DNA sequence from clone CH211-121I18 in...    36   2.7    2
(AX458544) Sequence 90 from Patent WO0246454.                      34   2.9    2
(FG109077) PRAG-aab44h08.g1 Sand_fly_EST_Normalized Phleboto...    36   3.7    2
(EU176072) Dactylorhiza elata voucher Chase O-718 ribosomal ...    44   3.9    2
(BJ359845) Dictyostelium discoideum cDNA clone:ddc2m21, 5' e...    38   4.3    2
(FI195360) CccaBa020-B6TR CccABa Cajanus cajan genomic clone...    36   5.3    2
(AE014297) Drosophila melanogaster chromosome 3R, complete s...    46   5.4    1
(AC008223) Drosophila melanogaster, chromosome 3R, region 95...    46   5.4    1
(DQ855263) Glycine max clone BAC GM-WBb0021D11, *** SEQUENCI...    46   5.4    1
(AC017812) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    46   5.4    1
(BX071975) Single read from an extremity of a full-length cD...    46   5.4    1
(FI282072) AdH1029-CPY2-D22TF AdH1 Arachis duranensis genomi...    46   5.4    1
(FI132836) CsB10STC_02D03R_856 ends of BAC library of B10 li...    46   5.4    1
(EK278938) 1095462287529 Global-Ocean-Sampling_GS-31-01-01-1...    46   5.4    1
(EJ631945) 1092963612085 Global-Ocean-Sampling_GS-29-01-01-1...    46   5.4    1
(DX511409) 643_4_14167529_5489_43566_019 Arachis duranensis ...    46   5.4    1
(AL156483) Anopheles gambiae GSS SP6 end of clone 31H21 of N...    46   5.4    1
(DE836662) Monosiga ovata DNA, BAC clone: MOBS-014D12_F, 5'end.    46   5.4    1
(CZ685665) OA_BBa0172E10.r OA_BBa Oryza alta genomic clone O...    46   5.4    1
(DC242171) Petunia x hybrida cDNA, clone: PET04SEQ05602C.          46   5.4    1
(CJ491677) Macaca fascicularis mRNA, clone: QtsA-19623, 5' e...    46   5.4    1
(CJ486156) Macaca fascicularis mRNA, clone: QtsA-13769, 5' e...    46   5.4    1
(CJ467847) Macaca fascicularis mRNA, clone: QnpA-17501, 5' e...    46   5.4    1
(CJ464211) Macaca fascicularis mRNA, clone: QnpA-12857, 5' e...    46   5.4    1
(CJ462598) Macaca fascicularis mRNA, clone: QnpA-10137, 5' e...    46   5.4    1
(CI024532) Oryza sativa Japonica Group cDNA, clone: 009-M008...    46   5.4    1
(BQ479281) ku31f10.y1 Strongyloides ratti PA female naive SL...    46   5.4    1
(BJ370075) Dictyostelium discoideum cDNA clone:ddc52e05, 5' ...    46   5.4    1
(BJ332406) Dictyostelium discoideum cDNA clone:dda39b04, 5' ...    46   5.4    1
(BI572737) RH08362.5prime RH Drosophila melanogaster normali...    46   5.4    1
(EU124736) Solanum lycopersicum chromosome 3 clone C03HBa014...    42   5.7    7
(AC100280) Mus musculus clone RP23-94B12, LOW-PASS SEQUENCE ...    38   5.9    2
(BX323561) Zebrafish DNA sequence from clone DKEYP-113G3.          38   7.0    8
(CJ465165) Macaca fascicularis mRNA, clone: QnpA-14192, 5' e...    38   8.5    2
(CJ439922) Macaca fascicularis mRNA, clone: QccE-17214, 5' e...    36   8.5    2
(CJ472834) Macaca fascicularis mRNA, clone: QorA-12728, 5' e...    38   8.5    3
(CJ450683) Macaca fascicularis mRNA, clone: QflA-16257, 5' e...    38   8.8    2
(CJ440407) Macaca fascicularis mRNA, clone: QccE-17725, 5' e...    36   8.9    2
(CJ485056) Macaca fascicularis mRNA, clone: QtsA-12625, 5' e...    38   9.0    2
(CJ448638) Macaca fascicularis mRNA, clone: QflA-14021, 5' e...    42   9.1    2
(CJ452818) Macaca fascicularis mRNA, clone: QflA-18489, 5' e...    36   9.2    2
(AX345677) Sequence 748 from Patent WO0200928.                     38   9.4    2
(CJ435287) Macaca fascicularis mRNA, clone: QccE-12323, 5' e...    36   9.6    2
(CU633239) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   9.6    2
(AC223375) Bos taurus clone CH240-421C2, WORKING DRAFT SEQUE...    34   9.6    2
(EK570659) 1095521075166 Global-Ocean-Sampling_GS-32-01-01-1...    44   9.9    2

>(BJ400328) Dictyostelium discoideum cDNA clone:dds9c22, 3' end,
            single read.
          Length = 537

 Score =  569 bits (287), Expect(2) = 0.0
 Identities = 287/287 (100%)
 Strand = Plus / Minus


Query: 1658 caagaatgaatagaataaaagaatattttaatggtataaacgataatttatcaccacatt 1717
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287  caagaatgaatagaataaaagaatattttaatggtataaacgataatttatcaccacatt 228


Query: 1718 atatagtattagattttaaagatgttagtatttatagaactggtggtggtcctgctgcac 1777
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227  atatagtattagattttaaagatgttagtatttatagaactggtggtggtcctgctgcac 168


Query: 1778 cagcttcagcattaccaattggtacttcatctcaaattgatccacttcaaatcactgaag 1837
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167  cagcttcagcattaccaattggtacttcatctcaaattgatccacttcaaatcactgaag 108


Query: 1838 tttatcctagtttagatatgtgtcattcaatatttgcaatctcttatgcaaaacaagctt 1897
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107  tttatcctagtttagatatgtgtcattcaatatttgcaatctcttatgcaaaacaagctt 48


Query: 1898 caaatatttttcattcaaatgttgctggtttcctttatgtttctgat 1944
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47   caaatatttttcattcaaatgttgctggtttcctttatgtttctgat 1

 Score =  478 bits (241), Expect(2) = 0.0
 Identities = 241/241 (100%)
 Strand = Plus / Minus


Query: 1409 acagttcaaacatttcaagaatctctggtttcattgcaaatacttgtggttggatagatg 1468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536  acagttcaaacatttcaagaatctctggtttcattgcaaatacttgtggttggatagatg 477


Query: 1469 gtttaggttataaaatactcttacaaaatattgatgtctttaaagcaaacttaatcattg 1528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476  gtttaggttataaaatactcttacaaaatattgatgtctttaaagcaaacttaatcattg 417


Query: 1529 ttatggataatgaaaaactttatagtgatatcagttctcattattctcaaaaagataatt 1588
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416  ttatggataatgaaaaactttatagtgatatcagttctcattattctcaaaaagataatt 357


Query: 1589 caattaaaattataaaattaccaaaatctggtggtgtatttataagaccaccagtattta 1648
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356  caattaaaattataaaattaccaaaatctggtggtgtatttataagaccaccagtattta 297


Query: 1649 g 1649
            |
Sbjct: 296  g 296

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 2,245,490,707
Number of extensions: 130500011
Number of successful extensions: 10207657
Number of sequences better than 10.0: 77
Length of query: 2112
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 2088
Effective length of database: 96,409,374,237
Effective search space: 201302773406856
Effective search space used: 201302773406856
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
protein update 2009. 7.17
Homology vs Protein 
Query= Contig-U15562-1 (Contig-U15562-1Q) /CSM_Contig/Contig-U15562-1Q.Seq.d
         (2112 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54N48) RecName: Full=Protein CLP1 homolog;                          445   e-123
EU960003_1(EU960003|pid:none) Zea mays clone 221091 pre-mRNA cle...   172   4e-77
EU969715_1(EU969715|pid:none) Zea mays clone 334636 pre-mRNA cle...   172   4e-77
AP004996_1(AP004996|pid:none) Oryza sativa Japonica Group genomi...   162   9e-76
AC011437_16(AC011437|pid:none) Arabidopsis thaliana chromosome I...   158   1e-73
BT056000_1(BT056000|pid:none) Zea mays full-length cDNA clone ZM...   153   4e-71
CP000583_14(CP000583|pid:none) Ostreococcus lucimarinus CCE9901 ...   154   4e-63
(A7RG82) RecName: Full=Protein CLP1 homolog;                          142   4e-62
(Q5ZJL4) RecName: Full=Polyribonucleotide 5'-hydroxyl-kinase Clp...   154   7e-60
AK145209_1(AK145209|pid:none) Mus musculus mammary gland RCB-052...   152   3e-59
(B4KML2) RecName: Full=Protein CLP1 homolog;                          149   9e-57
(Q6NS21) RecName: Full=Polyribonucleotide 5'-hydroxyl-kinase Clp...   144   3e-55
(Q66JK4) RecName: Full=Polyribonucleotide 5'-hydroxyl-kinase Clp...   143   4e-55
(Q7QJW7) RecName: Full=Protein CLP1 homolog;                          137   2e-54
(B4MCL6) RecName: Full=Protein CLP1 homolog;                          143   8e-53
(B4HQJ2) RecName: Full=Protein CLP1 homolog;                          144   3e-51
(B4QEE3) RecName: Full=Protein CLP1 homolog;                          144   3e-51
(B3NRK6) RecName: Full=Protein CLP1 homolog;                          144   6e-50
(B3MGZ0) RecName: Full=Protein CLP1 homolog;                          137   7e-50
(A6S936) RecName: Full=Protein clp1;                                  147   3e-49
(Q0U2G5) RecName: Full=Protein CLP1;                                  139   1e-47
(A2RAW3) RecName: Full=Protein clp1;  &AM270408_5(AM270408|pid:n...   146   7e-41
(A1CB93) RecName: Full=Protein clp1;                                  130   2e-31
(Q5BH19) RecName: Full=Protein clp1;                                  139   3e-31
(B0CS49) RecName: Full=Protein CLP1;                                  124   4e-31
(A1DE49) RecName: Full=Protein clp1;                                  131   9e-31
BT056049_1(BT056049|pid:none) Zea mays full-length cDNA clone ZM...   134   1e-29
(B0Y0Y6) RecName: Full=Protein clp1;                                  131   9e-29
AM920436_624(AM920436|pid:none) Penicillium chrysogenum Wisconsi...   130   1e-28
(Q10299) RecName: Full=Protein clp1;  &CU329670_987(CU329670|pid...   114   2e-28
(A3LNJ3) RecName: Full=Protein CLP1;                                   94   2e-28
AK300232_1(AK300232|pid:none) Homo sapiens cDNA FLJ51305 complet...   129   6e-28
(A4QQE0) RecName: Full=Protein CLP1;                                   99   6e-28
(Q7SAB7) RecName: Full=Protein CLP1;                                   90   4e-25
(A7TH62) RecName: Full=Protein CLP1;                                   74   7e-24
FN392321_757(FN392321|pid:none) Pichia pastoris GS115 chromosome...   114   1e-23
FN319321_1(FN319321|pid:none) Schistosoma japonicum isolate Anhu...    96   7e-23
FN319320_1(FN319320|pid:none) Schistosoma japonicum isolate Anhu...    96   1e-22
(Q59ST8) RecName: Full=Protein CLP1;                                   79   6e-22
FM992690_361(FM992690|pid:none) Candida dubliniensis CD36 chromo...    75   5e-20
AC009259_50(AC009259|pid:none) Trypanosoma brucei chromosome 6 c...    69   4e-19
CU633872_192(CU633872|pid:none) Podospora anserina genomic DNA c...    98   1e-18
(Q6CTU5) RecName: Full=Protein CLP1;  &CR382123_429(CR382123|pid...    72   3e-18
(Q6FMC8) RecName: Full=Protein CLP1;  &CR380957_387(CR380957|pid...    72   7e-18
AY669078_1(AY669078|pid:none) Trypanosoma cruzi cleavage factor ...    64   3e-17
AL844507_207(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    85   9e-15
AL590445_116(AL590445|pid:none) chromosome V of strain GB-M1 of ...    82   1e-13
(Q2H1L0) RecName: Full=Protein CLP1;                                   80   2e-13
CR940347_329(CR940347|pid:none) Theileria annulata strain Ankara...    69   5e-10
AC091330_47(AC091330|pid:none) Trypanosoma brucei chromosome 3 c...    68   2e-09
AM494967_236(AM494967|pid:none) Leishmania braziliensis chromoso...    56   4e-09
AY812536_1(AY812536|pid:none) Schistosoma japonicum SJCHGC06069 ...    53   4e-09
(Q4P9Z3) RecName: Full=Protein CLP1;                                   65   8e-09
AM502243_229(AM502243|pid:none) Leishmania infantum chromosome 25.     65   1e-08
AM494962_175(AM494962|pid:none) Leishmania braziliensis chromoso...    63   4e-08
CT005264_226(CT005264|pid:none) Leishmania major strain Friedlin...    62   8e-08
AC091781_44(AC091781|pid:none) Trypanosoma brucei chromosome 4 c...    59   9e-07
BA000023_515(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA, ...    47   1e-06
AM502248_277(AM502248|pid:none) Leishmania infantum chromosome 30.     53   4e-05
(A1CFB5) RecName: Full=Protein grc3;                                   49   5e-04
(Q5B4D1) RecName: Full=Protein grc3;                                   47   8e-04
CP000816_368(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co...    48   0.002
CP000698_3428(CP000698|pid:none) Geobacter uraniireducens Rf4, c...    47   0.002
(A1CYR9) RecName: Full=Protein grc3;                                   47   0.004
CP001146_123(CP001146|pid:none) Dictyoglomus thermophilum H-6-12...    47   0.004
(Q6BQV7) RecName: Full=Protein GRC3;  &CR382137_81(CR382137|pid:...    46   0.005
CP000505_195(CP000505|pid:none) Thermofilum pendens Hrk 5, compl...    46   0.006
AP007171_426(AP007171|pid:none) Aspergillus oryzae RIB40 genomic...    46   0.006
(Q07845) RecName: Full=Protein GRC3;  &S64786(S64786) &Z73140_1(...    41   0.008
(Q0CKU1) RecName: Full=Protein grc3;                                   45   0.010
CT005268_21(CT005268|pid:none) Leishmania major strain Friedlin,...    45   0.014
(Q4WID9) RecName: Full=Protein grc3;                                   44   0.022
AM920427_1617(AM920427|pid:none) Penicillium chrysogenum Wiscons...    44   0.031
(O57936) RecName: Full=Polyribonucleotide 5'-hydroxyl-kinase PH0...    44   0.031
AE009441_580(AE009441|pid:none) Pyrobaculum aerophilum str. IM2,...    43   0.052
(Q5JDN6) RecName: Full=Polyribonucleotide 5'-hydroxyl-kinase TK1...    43   0.052
CP001014_75(CP001014|pid:none) Thermoproteus neutrophilus V24Sta...    43   0.052
AM270135_21(AM270135|pid:none) Aspergillus niger contig An07c018...    43   0.052
CP000561_47(CP000561|pid:none) Pyrobaculum calidifontis JCM 1154...    42   0.068
FN392322_438(FN392322|pid:none) Pichia pastoris GS115 chromosome...    35   0.081
CP000501_95(CP000501|pid:none) Pichia stipitis CBS 6054 chromoso...    41   0.15
CP000575_613(CP000575|pid:none) Staphylothermus marinus F1, comp...    41   0.20
CP000463_661(CP000463|pid:none) Rhodopseudomonas palustris BisA5...    41   0.20
AE013599_2293(AE013599|pid:none) Drosophila melanogaster chromos...    40   0.26
AY070613_1(AY070613|pid:none) Drosophila melanogaster RE71565 fu...    40   0.26
CP000682_2000(CP000682|pid:none) Metallosphaera sedula DSM 5348,...    40   0.34
(Q58711) RecName: Full=Polyribonucleotide 5'-hydroxyl-kinase MJ1...    40   0.34
CP000394_1528(CP000394|pid:none) Granulibacter bethesdensis CGDN...    40   0.34
AP008226_160(AP008226|pid:none) Thermus thermophilus HB8 genomic...    40   0.44
CP000660_1844(CP000660|pid:none) Pyrobaculum arsenaticum DSM 135...    40   0.44
CP000504_841(CP000504|pid:none) Pyrobaculum islandicum DSM 4184,...    39   0.58
CU633865_190(CU633865|pid:none) Podospora anserina genomic DNA c...    39   0.58
AB027930_1(AB027930|pid:none) Schizosaccharomyces pombe gene for...    39   0.58
BC152270_1(BC152270|pid:none) Danio rerio GPN-loop GTPase 2, mRN...    39   0.76
BT058354_1(BT058354|pid:none) Salmo salar clone Contig4268 Hemog...    39   0.76
(Q6PUR6) RecName: Full=GPN-loop GTPase 2; AltName: Full=ATP-bind...    39   0.76
AE017196_356(AE017196|pid:none) Wolbachia endosymbiont of Drosop...    39   0.99
CT573326_1968(CT573326|pid:none) Pseudomonas entomophila str. L4...    39   0.99
AE009442_57(AE009442|pid:none) Xylella fastidiosa Temecula1, com...    39   0.99
AE009441_1562(AE009441|pid:none) Pyrobaculum aerophilum str. IM2...    38   1.3
(Q6C5P9) RecName: Full=Protein GRC3;  &CR382131_664(CR382131|pid...    38   1.3
CP000941_57(CP000941|pid:none) Xylella fastidiosa M12, complete ...    38   1.3
BT073146_1(BT073146|pid:none) Oncorhynchus mykiss clone omyk-evn...    38   1.3
AE003849_88(AE003849|pid:none) Xylella fastidiosa 9a5c, complete...    38   1.3
X97286_2(X97286|pid:none) S.salar genes encoding alpha-globin an...    38   1.7
CP000077_827(CP000077|pid:none) Sulfolobus acidocaldarius DSM 63...    38   1.7
E72545(E72545)hypothetical protein APE1649 - Aeropyrum pernix (s...    38   1.7
BA000002_1086(BA000002|pid:none) Aeropyrum pernix K1 DNA, comple...    38   1.7
BT058245_1(BT058245|pid:none) Salmo salar clone Contig2602 Hemog...    37   2.2
BT058672_1(BT058672|pid:none) Salmo salar clone Contig3171 Hemog...    37   2.2
CP000562_1421(CP000562|pid:none) Methanoculleus marisnigri JR1, ...    37   2.2
AP011117_29(AP011117|pid:none) Rhodococcus opacus B4 plasmid pRO...    37   2.2
CP000561_940(CP000561|pid:none) Pyrobaculum calidifontis JCM 115...    37   2.2
CP000968_1264(CP000968|pid:none) Candidatus Korarchaeum cryptofi...    37   2.2
(Q82B58) RecName: Full=Putative ABC transporter ATP-binding prot...    37   2.2
CP000881_91(CP000881|pid:none) Hemiselmis andersenii chromosome ...    37   2.2
EU964249_1(EU964249|pid:none) Zea mays clone 277308 hypothetical...    37   2.9
BA000002_399(BA000002|pid:none) Aeropyrum pernix K1 DNA, complet...    37   2.9
CP001014_1371(CP001014|pid:none) Thermoproteus neutrophilus V24S...    37   2.9
CP000493_125(CP000493|pid:none) Hyperthermus butylicus DSM 5456,...    37   3.7
(P21410) RecName: Full=Fe(3+) ions import ATP-binding protein fb...    37   3.7
AP009493_5172(AP009493|pid:none) Streptomyces griseus subsp. gri...    37   3.7
AP002870_8(AP002870|pid:none) Oryza sativa Japonica Group genomi...    37   3.7
BA000030_4265(BA000030|pid:none) Streptomyces avermitilis MA-468...    37   3.7
CP001398_823(CP001398|pid:none) Thermococcus gammatolerans EJ3, ...    36   4.9
DQ489736_855(DQ489736|pid:none) Leuconostoc citreum KM20, comple...    36   4.9
AB004738_1(AB004738|pid:none) Cyprinus carpio gene for alpha-glo...    36   4.9
CP001336_325(CP001336|pid:none) Desulfitobacterium hafniense DCB...    36   4.9
(P02016) RecName: Full=Hemoglobin subunit alpha; AltName: Full=H...    36   6.4
AB004739_1(AB004739|pid:none) Cyprinus carpio gene for alpha-glo...    36   6.4
AB004736_1(AB004736|pid:none) Cyprinus carpio No.3 alpha gene fo...    36   6.4
CP000716_1720(CP000716|pid:none) Thermosipho melanesiensis BI429...    36   6.4
FN392320_10(FN392320|pid:none) Pichia pastoris GS115 chromosome ...    36   6.4
AE008691_2464(AE008691|pid:none) Thermoanaerobacter tengcongensi...    36   6.4
AM039952_1769(AM039952|pid:none) Xanthomonas campestris pv. vesi...    35   8.3
(A5VRB1) RecName: Full=Urease accessory protein ureG 2;  &(A9M61...    35   8.3
CP001581_2048(CP001581|pid:none) Clostridium botulinum A2 str. K...    35   8.3
CP001291_1479(CP001291|pid:none) Cyanothece sp. PCC 7424, comple...    35   8.3
BX572595_288(BX572595|pid:none) Rhodopseudomonas palustris CGA00...    35   8.3
CP001488_1298(CP001488|pid:none) Brucella melitensis ATCC 23457 ...    35   8.3
(P36057) RecName: Full=Signal recognition particle receptor subu...    35   8.3
(Q6FW56) RecName: Full=Protein GRC3;  &CR380950_121(CR380950|pid...    35   8.3
AE008923_1711(AE008923|pid:none) Xanthomonas axonopodis pv. citr...    35   8.3
CP000686_2270(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    35   8.3

>(Q54N48) RecName: Full=Protein CLP1 homolog;
          Length = 459

 Score =  445 bits (1145), Expect = e-123
 Identities = 223/249 (89%), Positives = 223/249 (89%)
 Frame = +3

Query: 150 MSNDNRVNINNFSSMNXXXXXSDIQFPLKPXXXXXXXXXXXXXXXXXRTLEIXQELRYEI 329
           MSNDN VNINNFSSMN     SDIQFPLKP                 RTLEI QELRYEI
Sbjct: 1   MSNDNSVNINNFSSMNGGGGGSDIQFPLKPSQQQQQQQQNSINQSTIRTLEITQELRYEI 60

Query: 330 DFDQNGWMKLIEGXAECFGXELSLNKVYKLSGTKGAVFTWTGCKIEITNNCQPYIGEKTP 509
           DFDQNGWMKLIEG AECFG ELSLNKVYKLSGTKGAVFTWTGCKIEITNNCQPYIGEKTP
Sbjct: 61  DFDQNGWMKLIEGTAECFGTELSLNKVYKLSGTKGAVFTWTGCKIEITNNCQPYIGEKTP 120

Query: 510 MPQYAGVYQELDAFRVSILDEPKKSGPRVIIVGPTDSGKSSLSKILLAYSARSGYQPLFV 689
           MPQYAGVYQELDAFRVSILDEPKKSGPRVIIVGPTDSGKSSLSKILLAYSARSGYQPLFV
Sbjct: 121 MPQYAGVYQELDAFRVSILDEPKKSGPRVIIVGPTDSGKSSLSKILLAYSARSGYQPLFV 180

Query: 690 DLDPGQGSITIPGTISAAHIQNPLDIEEGLAGGIPLAHFYGHTSLDVNPDLFKALCKNLA 869
           DLDPGQGSITIPGTISAAHIQNPLDIEEGLAGGIPLAHFYGHTSLDVNPDLFKALCKNLA
Sbjct: 181 DLDPGQGSITIPGTISAAHIQNPLDIEEGLAGGIPLAHFYGHTSLDVNPDLFKALCKNLA 240

Query: 870 SFIDKQLDS 896
           SFIDKQLDS
Sbjct: 241 SFIDKQLDS 249

 Score =  369 bits (948), Expect = e-100
 Identities = 186/201 (92%), Positives = 186/201 (92%)
 Frame = +1

Query: 1408 DSSNISRISGFIANTCGWIDGLGYKILLQNIDVFKANLIIVMDNEKLYSDISSHYSQKDN 1587
            DSSNISRISGFIANTCGWIDGLGYKILLQNIDVFKANLIIVMDNEKLYSDISSHYSQKDN
Sbjct: 248  DSSNISRISGFIANTCGWIDGLGYKILLQNIDVFKANLIIVMDNEKLYSDISSHYSQKDN 307

Query: 1588 SIKIIKLPKSGGVFIRPPVFRKKTRMNRIKEYFNGINDNLSPHYIVLDFKDVSIYRTXXX 1767
            SIKIIKLPKSGGVFIRPPVFRKKTRMNRIKEYFNGINDNLSPHYIVLDFKDVSIYRT
Sbjct: 308  SIKIIKLPKSGGVFIRPPVFRKKTRMNRIKEYFNGINDNLSPHYIVLDFKDVSIYRTGGG 367

Query: 1768 XXXXXXXXXXXTSSQIDPLQITEVYPSLDMCHSIFAISYAKQASNIFHSNVAGFLYVSDI 1947
                       TSSQIDPLQITEVYPSLDMCHSIFAISYAKQASNIFHSNVAGFLYVSDI
Sbjct: 368  PAAPASALPIGTSSQIDPLQITEVYPSLDMCHSIFAISYAKQASNIFHSNVAGFLYVSDI 427

Query: 1948 DMETKKITVISPAPGPXPSRF 2010
            DMETKKITVISPAPGP PSRF
Sbjct: 428  DMETKKITVISPAPGPLPSRF 448

 Score =  340 bits (871), Expect = 2e-91
 Identities = 167/175 (95%), Positives = 168/175 (96%)
 Frame = +2

Query: 899  LNKVYKLSGTKGAVFTWTGCKIEITNNCQPYIGEKTPMPQYAGVYQELDAFRVSILDEPK 1078
            LNKVYKLSGTKGAVFTWTGCKIEITNNCQPYIGEKTPMPQYAGVYQELDAFRVSILDEPK
Sbjct: 84   LNKVYKLSGTKGAVFTWTGCKIEITNNCQPYIGEKTPMPQYAGVYQELDAFRVSILDEPK 143

Query: 1079 KSGPRVIIVGPTDSGKSSLSKILLAYSARSGYQPLFVDLDPGQGSITIPGTISAAHIQNP 1258
            KSGPRVIIVGPTDSGKSSLSKILLAYSARSGYQPLFVDLDPGQGSITIPGTISAAHIQNP
Sbjct: 144  KSGPRVIIVGPTDSGKSSLSKILLAYSARSGYQPLFVDLDPGQGSITIPGTISAAHIQNP 203

Query: 1259 LDIEEGLAGGIPLAHFYGHTSLDVNPDLFKALCKNLASFIDKQLDSXXXXTVQTF 1423
            LDIEEGLAGGIPLAHFYGHTSLDVNPDLFKALCKNLASFIDKQLDS     +  F
Sbjct: 204  LDIEEGLAGGIPLAHFYGHTSLDVNPDLFKALCKNLASFIDKQLDSSNISRISGF 258

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 3,273,411,240
Number of extensions: 64997886
Number of successful extensions: 227192
Number of sequences better than 10.0: 144
Number of HSP's gapped: 226785
Number of HSP's successfully gapped: 341
Length of query: 704
Length of database: 1,051,180,864
Length adjustment: 136
Effective length of query: 568
Effective length of database: 611,008,840
Effective search space: 347053021120
Effective search space used: 347053021120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.78  gvh: 0.41  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.41  mip: 0.02
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 1.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 20.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 20.0 %: plasma membrane
	 16.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  8.0 %: Golgi
	  8.0 %: vesicles of secretory system

>> prediction for Contig-U15562-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 2
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 2
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0