Contig-U03062-1
Contig ID Contig-U03062-1
Contig update 2001. 8.29
Contig sequence
>Contig-U03062-1 (Contig-U03062-1Q) /CSM_Contig/Contig-U03062-1Q.Seq.d
TTATCATTATAATATACCAACATCACTTAAAGATATTAAATCAATAATTA
TTAAATCTCAAAAATTAAAAGGGTCAATTACAATCTTTAAAACAAGTTTT
TAAACAAAATATAATTATAAATAATCAAGAAGTAATTGAACAACAAGTAG
ATGCTATTAAACAACAGCAACAGCAACAACAAGAACAACAACAAGAACAA
GAACAAGAACAACAACAACAACAAGATGGTGAATCAATATCATTATCATC
ATCAACATCATCAGGTATAACAATATCATCATTATCAAATATTGAATATA
ATCCAAGTATAGCATTTAAATTGGGTAAAGAATTTGTAATTGGTAATTTA
TTCATTGATCAAATTATATTATTTTTAGAATTTCTATATGGTATTGCATT
AGAGATTGAAACTAATTTACAATATTGGGAATCAATTGAACCAACAATAT
ACTATTTACAAAAGTCACCTTTATTTTGGTTAAAATATTATCATCAACAA
TTGAATAGAAGAATACAATTCTCAAATAAATTTAGTGAACTTCATAATTT
AAAACAACCAAAACCAATACTTTATATTTCAAATCTTTTAAATAAAGTAA
ATTCTTTTATTTTAAATAAACAACCATCATCACAACAAGTCGAGCAACAA
CAACAACAGCAACAAGAAAGAGATGAGCAACAACAACAACAACAACAACA
ACAGCAACAACAACAACAACATAATAAGAGTCATCAGTCATCATCATCAT
CG

Gap no gap
Contig length 752
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 485783
End point 486535
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U03062
List of clone(s)

est1=CFA249Z,1,753
Translated Amino Acid sequence
iiiiyqhhlkilnq*llnlkn*KGQLQSLKQVFKQNIIINNQEVIEQQVDAIKQQQQQQQ
EQQQEQEQEQQQQQDGESISLSSSTSSGITISSLSNIEYNPSIAFKLGKEFVIGNLFIDQ
IILFLEFLYGIALEIETNLQYWESIEPTIYYLQKSPLFWLKYYHQQLNRRIQFSNKFSEL
HNLKQPKPILYISNLLNKVNSFILNKQPSSQQVEQQQQQQQERDEQQQQQQQQQQQQQQH
NKSHQSSSSS


Translated Amino Acid sequence (All Frames)
Frame A:
lsl*ytnit*ry*inny*iskikrvnynl*nkflnki*l*iikk*lnnk*mllnnsnsnn
knnnknknknnnnnkmvnqyhyhhqhhqv*qyhhyqilniiqv*hlnwvknl*lviysli
klyyf*nfymvlh*rlkliynignqlnqqytiykshlyfg*niiinn*ieeynsqinlvn
fii*nnqnqyfifqif*ik*illf*innhhhnkssnnnnsnkkemsnnnnnnnnsnnnnn
iirvishhhh


Frame B:
yhyniptslkdiksiiiksqklkgsitifktsf*tkynyk*srsn*ttsrcy*ttatatt
rtttrtrtrtttttrw*iniiiiiniirynniiiiky*i*skysi*ig*ricnw*fih*s
nyiifrisiwycird*n*ftilgin*tnnilftkvtfilvkilsstie*kntilk*i**t
s*fkttktntlyfksfk*skffyfk*ttiittsrattttatrkr*attttttttattttt
**essviiii


Frame C:
iiiiyqhhlkilnq*llnlkn*KGQLQSLKQVFKQNIIINNQEVIEQQVDAIKQQQQQQQ
EQQQEQEQEQQQQQDGESISLSSSTSSGITISSLSNIEYNPSIAFKLGKEFVIGNLFIDQ
IILFLEFLYGIALEIETNLQYWESIEPTIYYLQKSPLFWLKYYHQQLNRRIQFSNKFSEL
HNLKQPKPILYISNLLNKVNSFILNKQPSSQQVEQQQQQQQERDEQQQQQQQQQQQQQQH
NKSHQSSSSS


own update 2004. 6. 9
Homology vs CSM-cDNA
Query= Contig-U03062-1 (Contig-U03062-1Q)
/CSM_Contig/Contig-U03062-1Q.Seq.d
(752 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U03062-1 (Contig-U03062-1Q) /CSM_Contig/Conti... 656 0.0
Contig-U12559-1 (Contig-U12559-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U05153-1 (Contig-U05153-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U13914-1 (Contig-U13914-1Q) /CSM_Contig/Conti... 38 0.013
Contig-U12619-1 (Contig-U12619-1Q) /CSM_Contig/Conti... 38 0.013
Contig-U10246-1 (Contig-U10246-1Q) /CSM_Contig/Conti... 38 0.013
Contig-U13902-1 (Contig-U13902-1Q) /CSM_Contig/Conti... 36 0.053
Contig-U12095-1 (Contig-U12095-1Q) /CSM_Contig/Conti... 36 0.053
Contig-U11697-1 (Contig-U11697-1Q) /CSM_Contig/Conti... 36 0.053
Contig-U11467-1 (Contig-U11467-1Q) /CSM_Contig/Conti... 36 0.053

>Contig-U03062-1 (Contig-U03062-1Q) /CSM_Contig/Contig-U03062-1Q.Seq.d
Length = 752

Score = 656 bits (331), Expect = 0.0
Identities = 331/331 (100%)
Strand = Plus / Plus


Query: 288 aatattgaatataatccaagtatagcatttaaattgggtaaagaatttgtaattggtaat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aatattgaatataatccaagtatagcatttaaattgggtaaagaatttgtaattggtaat 347


Query: 348 ttattcattgatcaaattatattatttttagaatttctatatggtattgcattagagatt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ttattcattgatcaaattatattatttttagaatttctatatggtattgcattagagatt 407


Query: 408 gaaactaatttacaatattgggaatcaattgaaccaacaatatactatttacaaaagtca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gaaactaatttacaatattgggaatcaattgaaccaacaatatactatttacaaaagtca 467


Query: 468 cctttattttggttaaaatattatcatcaacaattgaatagaagaatacaattctcaaat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 cctttattttggttaaaatattatcatcaacaattgaatagaagaatacaattctcaaat 527


Query: 528 aaatttagtgaacttcataatttaaaacaaccaaaaccaatactttatatttcaaatctt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 aaatttagtgaacttcataatttaaaacaaccaaaaccaatactttatatttcaaatctt 587


Query: 588 ttaaataaagtaaattcttttattttaaata 618
|||||||||||||||||||||||||||||||
Sbjct: 588 ttaaataaagtaaattcttttattttaaata 618


Score = 315 bits (159), Expect = 4e-86
Identities = 159/159 (100%)
Strand = Plus / Plus


Query: 1 ttatcattataatataccaacatcacttaaagatattaaatcaataattattaaatctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttatcattataatataccaacatcacttaaagatattaaatcaataattattaaatctca 60


Query: 61 aaaattaaaagggtcaattacaatctttaaaacaagtttttaaacaaaatataattataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaaattaaaagggtcaattacaatctttaaaacaagtttttaaacaaaatataattataa 120


Query: 121 ataatcaagaagtaattgaacaacaagtagatgctatta 159
|||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ataatcaagaagtaattgaacaacaagtagatgctatta 159


Score = 61.9 bits (31), Expect = 9e-10
Identities = 31/31 (100%)
Strand = Plus / Plus


Query: 722 taataagagtcatcagtcatcatcatcatcg 752
|||||||||||||||||||||||||||||||
Sbjct: 722 taataagagtcatcagtcatcatcatcatcg 752


>Contig-U12559-1 (Contig-U12559-1Q) /CSM_Contig/Contig-U12559-1Q.Seq.d
Length = 2019

Score = 40.1 bits (20), Expect = 0.003
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 109 atataattataaataatcaa 128
||||||||||||||||||||
Sbjct: 27 atataattataaataatcaa 46


>Contig-U05153-1 (Contig-U05153-1Q) /CSM_Contig/Contig-U05153-1Q.Seq.d
Length = 564

Score = 40.1 bits (20), Expect = 0.003
Identities = 23/24 (95%)
Strand = Plus / Plus


Query: 101 taaacaaaatataattataaataa 124
|||||||| |||||||||||||||
Sbjct: 478 taaacaaattataattataaataa 501


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,058
Number of Sequences: 6905
Number of extensions: 19058
Number of successful extensions: 2975
Number of sequences better than 10.0: 281
length of query: 752
length of database: 5,674,871
effective HSP length: 16
effective length of query: 736
effective length of database: 5,564,391
effective search space: 4095391776
effective search space used: 4095391776
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.25
Homology vs DNA
Query= Contig-U03062-1 (Contig-U03062-1Q) /CSM_Contig/Contig-U03062-1Q.Seq.d
(752 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ371786) Dictyostelium discoideum cDNA clone:ddc1a14, 3' e... 624 0.0 3
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 40 3e-04 19
(AC114210) Rattus norvegicus clone CH230-101J9, *** SEQUENCI... 56 0.002 1
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 34 0.005 11
(AL844509) Plasmodium falciparum chromosome 13. 36 0.006 14
(AC219983) Bos taurus clone CH240-317B19, WORKING DRAFT SEQU... 54 0.008 1
(AZ687330) ENTKS07TF Entamoeba histolytica Sheared DNA Entam... 54 0.008 1
(AC073915) Homo sapiens chromosome 12 clone RP11-170P5, WORK... 38 0.023 5
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 34 0.033 9
(AX344566) Sequence 17 from Patent WO0200932. 32 0.034 12
(AX344551) Sequence 2 from Patent WO0200932. 32 0.037 11
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 32 0.041 13
(CP000013) Borrelia garinii PBi, complete genome. 42 0.047 12
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 36 0.060 12
(CR933838) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 0.076 2
(BX530035) Zebrafish DNA sequence from clone CH211-257I19 in... 36 0.076 2
(CR382401) Plasmodium falciparum chromosome 6, complete sequ... 32 0.080 10
(AE017263) Mesoplasma florum L1 complete genome. 32 0.082 14
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 30 0.083 11
(AC020248) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 36 0.087 4
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7... 34 0.099 10
(ER469591) 1092963944400 Global-Ocean-Sampling_GS-35-01-01-1... 42 0.099 2
(DU925849) 350730 Tomato EcoRI BAC Library Solanum lycopersi... 44 0.10 2
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 32 0.10 10
(EF543346) Pediomelum palmeri voucher Grimes 2636 (TEX) tRNA... 38 0.10 2
(EF543351) Pediomelum rhombifolium voucher Egan & Egan 179 (... 38 0.10 2
(EF543382) Pediomelum rhombifolium voucher Egan & Egan 187 (... 38 0.10 2
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 32 0.16 17
(AC216661) Solanum lycopersicum chromosome 6 clone C06SLm002... 44 0.19 5
(CU463279) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.19 5
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete... 38 0.22 15
(AC109818) Homo sapiens BAC clone RP11-293F1 from 4, complet... 44 0.24 3
(AC132871) Mus musculus chromosome 1, clone RP24-387A12, com... 34 0.28 2
(CU392853) Mouse DNA sequence from clone DN-78O3 on chromoso... 34 0.28 2
(AX429455) Sequence 5 from Patent WO0234927. 36 0.29 2
(AE017308) Mycoplasma mobile 163K complete genome. 34 0.29 12
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI... 34 0.30 10
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 32 0.30 10
(AC234728) Brassica rapa subsp. pekinensis chromosome Linkag... 36 0.34 5
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 40 0.36 9
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 34 0.41 13
(BX005302) Zebrafish DNA sequence from clone DKEY-237I15 in ... 34 0.44 5
(AL929359) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 0.47 11
(EK148231) 1095456034401 Global-Ocean-Sampling_GS-31-01-01-1... 30 0.47 4
(CU466341) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.49 1
(AC175122) Bos taurus clone CH240-434I13, WORKING DRAFT SEQU... 48 0.49 1
(AC166130) Bos taurus clone CH240-118I18, *** SEQUENCING IN ... 48 0.49 1
(ER967414) AF__Bc0007N18r AF__Bc Aquilegia formosa genomic, ... 48 0.49 1
(BZ398031) EINDY18TR EI_10_12_KB Entamoeba invadens genomic ... 48 0.49 1
(DX550484) GH_MBb0046M17r GH_MBb Gossypium hirsutum genomic ... 42 0.53 2
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ... 38 0.54 7
(CS374442) Sequence 545 from Patent WO2006034879. 42 0.59 2
(CS374170) Sequence 273 from Patent WO2006034879. 42 0.59 2
(FH859526) OSB_179011xh15f1.ab1 OSB_179 Nicotiana tabacum ge... 38 0.60 2
(AC055823) Homo sapiens clone RP11-45A9, WORKING DRAFT SEQUE... 36 0.60 5
(AE017332) Mycoplasma hyopneumoniae 232, complete genome. 32 0.62 14
(BX530071) Zebrafish DNA sequence from clone CH211-189P14 in... 36 0.66 5
(AX392733) Sequence 23 from Patent WO0212526. 32 0.70 7
(AR707080) Sequence 23 from patent US 6933145. 32 0.70 7
(AF016439) Caenorhabditis elegans cosmid R02F11, complete se... 38 0.76 4
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 34 0.77 19
(AC205681) Solanum lycopersicum chromosome 5 clone C05HBa002... 44 0.77 5
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 32 0.78 12
(AX344559) Sequence 10 from Patent WO0200932. 36 0.79 11
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5... 32 0.82 9
(FB571381) Sequence 248 from Patent EP1865317. 34 0.85 10
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 32 0.87 16
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com... 32 0.87 16
(AC110467) Rattus norvegicus clone CH230-320D17, *** SEQUENC... 38 0.87 5
(BH485136) BOHIE35TF BOHI Brassica oleracea genomic clone BO... 38 0.89 2
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 32 0.92 9
(BV337237) S230P686RC2.T0 Rottweiler Canis familiaris STS ge... 42 0.93 2
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 36 0.93 13
(AC224918) Bos taurus clone CH240-472P22, WORKING DRAFT SEQU... 38 0.93 5
(AC226729) Solanum lycopersicum chromosome 6 clone C06SLe007... 44 0.97 5
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 34 0.97 9
(AC170768) Bos taurus clone CH240-263H15, WORKING DRAFT SEQU... 36 1.0 2
(AC187202) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 46 1.0 3
(AC233567) Heliconius erato clone BBAM-17F2, WORKING DRAFT S... 34 1.0 2
(CT737366) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 1.0 4
(CU467519) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 1.0 2
(BX323029) Zebrafish DNA sequence from clone CH211-261O16. 34 1.0 2
(AC073491) Homo sapiens chromosome X clone RP11-107D13, WORK... 36 1.0 8
(EC823277) SME00001082 esmbsro2 Sawyeria marylandensis cDNA,... 44 1.0 2
(AC010016) Drosophila melanogaster 3L BAC RP98-10M10 (Roswel... 36 1.1 5
(EY330658) CAWY3639.fwd CAWY Helobdella robusta Subtracted E... 34 1.1 3
(DD010735) Diagnosis of known genetic Parameters within the ... 36 1.1 13
(AG596206) Mus musculus molossinus DNA, clone:MSMg01-526K17.... 40 1.1 2
(AC016272) Homo sapiens chromosome 2 clone RP11-626A3 map 2,... 32 1.2 8
(EK221978) 1095460143909 Global-Ocean-Sampling_GS-31-01-01-1... 40 1.2 2
(DN237558) EST00684 BmP Bombyx mori cDNA clone Bmp001_248A_2... 40 1.2 2
(AL844506) Plasmodium falciparum chromosome 7. 34 1.2 11
(CP000685) Flavobacterium johnsoniae UW101, complete genome. 36 1.3 17
(FG292300) 1108457713646 New World Screwworm Larvae 9387 EST... 36 1.3 2
(FG293205) 1108770666478 New World Screwworm Larvae 9387 EST... 36 1.3 2
(BH711991) BOMLA18TF BO_2_3_KB Brassica oleracea genomic clo... 36 1.4 2
(AL928672) Zebrafish DNA sequence from clone CH211-136O4 in ... 40 1.4 5
(AC160342) Bos taurus clone CH240-94L20, WORKING DRAFT SEQUE... 42 1.4 4
(FP236659) Brassica rapa subsp. pekinensis clone KBrB122B06,... 36 1.4 9
(EJ838425) 1093017815773 Global-Ocean-Sampling_GS-30-02-01-1... 44 1.5 2
(M33770) L.lactis thymidylate synthase (thyA) gene, complete... 40 1.5 2
(EF543383) Pediomelum linearifolium voucher Egan & Egan 206 ... 38 1.5 2
(AC177089) Strongylocentrotus purpuratus clone R3-4012A24, W... 32 1.5 9
(BD061520) Genome DNA of symbiotic bacteria of aphid. 34 1.5 13
(AR409405) Sequence 1 from patent US 6632935. 34 1.5 13
(BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum... 34 1.5 13
(CP001158) Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisu... 34 1.6 13
(A26416) S.lactis TS gene for thymidylate synthase. 40 1.6 2
(CP001161) Buchnera aphidicola str. 5A (Acyrthosiphon pisum)... 34 1.6 13
(FB571304) Sequence 171 from Patent EP1865317. 40 1.6 7
(EY373952) CAXA14823.fwd CAXA Helobdella robusta Subtracted ... 34 1.6 3
(EY326440) CAWY11600.fwd CAWY Helobdella robusta Subtracted ... 34 1.7 3
(AC178856) Strongylocentrotus purpuratus clone R3-26I21, WOR... 38 1.8 6
(AL035258) Human DNA sequence from clone RP5-1097P24 on chro... 46 1.8 3
(EJ848789) 1093017869617 Global-Ocean-Sampling_GS-30-02-01-1... 38 1.8 3
(CP000976) Borrelia duttonii Ly, complete genome. 36 1.8 11
(AM445395) Vitis vinifera contig VV78X136138.6, whole genome... 30 1.9 6
(AC005506) Plasmodium falciparum chromosome 12 clone PFYAC35... 34 1.9 7
(AC181364) Strongylocentrotus purpuratus clone R3-113H02, WO... 38 1.9 4
(FJ429371) Carica papaya clone 90D06, complete sequence. 46 1.9 1
(DJ386569) Diagnosis of Diseases Associated with Metastasis. 46 1.9 1
(DJ060343) Method and nucleic acids for the improved treatme... 46 1.9 1
(DJ060221) Method and nucleic acids for the improved treatme... 46 1.9 1
(DD392061) Method and nucleic acids for the improved treatme... 46 1.9 1
(DD391993) Method and nucleic acids for the improved treatme... 46 1.9 1
(DD391787) Method and nucleic acids for the improved treatme... 46 1.9 1
(DD391719) Method and nucleic acids for the improved treatme... 46 1.9 1
(CS124690) Sequence 376 from Patent WO2005059172. 46 1.9 1
(CS124568) Sequence 254 from Patent WO2005059172. 46 1.9 1
(CQ807317) Sequence 767 from Patent WO2004035803. 46 1.9 1
(CQ807249) Sequence 699 from Patent WO2004035803. 46 1.9 1
(CQ807043) Sequence 493 from Patent WO2004035803. 46 1.9 1
(CQ806975) Sequence 425 from Patent WO2004035803. 46 1.9 1
(AX348945) Sequence 403 from Patent WO0202807. 46 1.9 1
(AX345542) Sequence 613 from Patent WO0200928. 46 1.9 1
(AX345264) Sequence 335 from Patent WO0200928. 46 1.9 1
(AX281365) Sequence 29 from Patent WO0177376. 46 1.9 1
(CU928221) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.9 1
(AC163525) Bos taurus clone CH240-144H17, *** SEQUENCING IN ... 46 1.9 1
(BH021710) GH_MBb0001F03f Gossypium hirsutum L. Gossypium hi... 46 1.9 1
(EJ534497) 1092955250715 Global-Ocean-Sampling_GS-29-01-01-1... 46 1.9 1
(EJ014310) 1095433011914 Global-Ocean-Sampling_GS-26-01-01-1... 46 1.9 1
(DU853676) 57384 Tomato HindIII BAC Library Solanum lycopers... 46 1.9 1
(CL864392) TM1-GSS000398f BAC and BIBAC libraries from Uplan... 46 1.9 1
(EH053486) THL24h-2609 cDNA library of Tamarix hispida leave... 46 1.9 1
(EB218146) PEG002-C-014045-301 Normalized Pedal-Pleural Gang... 46 1.9 1
(DW277195) UI-S-HH0-ade-j-09-0-UI.s1 UI-S-HH0 Euprymna scolo... 46 1.9 1
(DW270360) UI-S-GS0-ach-i-04-0-UI.s1 UI-S-GS0 Euprymna scolo... 46 1.9 1
(DV439361) davisf0008A13 Fragaria vesca 'Yellow Wonder' flow... 46 1.9 1
(DR642253) EST1032878 FvM Gibberella moniliformis cDNA clone... 46 1.9 1
(DR640172) EST1030797 FvM Gibberella moniliformis cDNA clone... 46 1.9 1
(DR625879) EST1016007 FvI Gibberella moniliformis cDNA clone... 46 1.9 1
(DR616534) EST1006662 FvH Gibberella moniliformis cDNA clone... 46 1.9 1
(DN307099) PL05013A1D04 cDNA from sexually mature hermaphodi... 46 1.9 1
(DN304801) PL05006B2C11 cDNA from sexually mature hermaphodi... 46 1.9 1
(DN299671) PL04016B2C05 cDNA from sexually mature hermaphodi... 46 1.9 1
(DN298241) PL04012A1G01 cDNA from sexually mature hermaphodi... 46 1.9 1
(DN298002) PL04011A2D10 cDNA from sexually mature hermaphodi... 46 1.9 1
(DN296842) PL04007A2G07 cDNA from sexually mature hermaphodi... 46 1.9 1
(DN295057) PL03018B2D11 cDNA from sexually mature hermaphodi... 46 1.9 1
(FK073425) XABT131914.g1 Gateway compatible cien cDNA librar... 46 1.9 1
(AC151806) Medicago truncatula clone mth2-57p22, complete se... 38 2.0 6
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 32 2.0 10
(AC215365) Solanum lycopersicum chromosome 2 clone C02HBa003... 40 2.1 4
(AX344552) Sequence 3 from Patent WO0200932. 32 2.1 11
(AC232022) Solanum tuberosum chromosome 5 clone RH049K20, **... 38 2.2 6
(AC091174) Homo sapiens chromosome 8 clone RP11-107D13 map 8... 36 2.2 6
(AC222326) Bos taurus clone CH240-415C15, WORKING DRAFT SEQU... 34 2.3 7
(AC115581) Dictyostelium discoideum chromosome 2 map complem... 40 2.3 6
(AC106676) Rattus norvegicus clone CH230-107N12, WORKING DRA... 38 2.3 4
(AC174335) Medicago truncatula clone mth2-155l22, complete s... 34 2.5 4
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 34 2.5 11
(FB744743) Sequence 66 from Patent WO2008011620. 40 2.5 7
(FB332204) Sequence 11 from Patent WO2007115213. 40 2.5 7
(CS448327) Sequence 11 from Patent WO2006117381. 40 2.5 7
(GM987247) Sequence 11 from Patent EP2009115. 40 2.5 7
(GM841800) Sequence 123 from Patent WO2008122447. 40 2.5 7
(AP009510) Uncultured Termite group 1 bacterium phylotype Rs... 38 2.5 11
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ... 38 2.6 8
(FB676007) Sequence 10 from Patent WO2007118704. 40 2.6 7
(AB026660) Arabidopsis thaliana genomic DNA, chromosome 5, B... 32 2.7 5
(CP000726) Clostridium botulinum A str. ATCC 19397, complete... 34 2.7 15
(AC127972) Rattus norvegicus clone CH230-304N22, WORKING DRA... 40 2.8 3
(BD453025) Diagnosis of Diseases Associated with tumor suppr... 32 2.8 5
(AX344503) Sequence 350 from Patent WO0200926. 32 2.8 5
(AX251504) Sequence 472 from Patent WO0168912. 32 2.8 5
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1... 36 2.8 11
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co... 32 2.8 7
(AK262832) Gryllus bimaculatus mRNA, GBcontig09693. 34 2.9 2
(EY399033) pOP-CEO03263_EST_C_1_pSK_SK CEO (Oil Palm Embryog... 38 3.0 2
(AC189561) Brassica rapa subsp. pekinensis clone KBrH007P05,... 36 3.0 5
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 34 3.0 13
(AJ131517) Arabidopsis thaliana MYB37 homologue gene and ORF1. 32 3.0 5
(BB974616) Plasmodium berghei str. ANKA cDNA clone: OK004427... 42 3.0 2
(AP009096) Marchantia polymorpha genomic DNA, chromosome Y, ... 34 3.1 2
(AL512368) Human DNA sequence from clone RP11-387L5 on chrom... 32 3.2 6
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 42 3.3 14
(BZ320783) hz13c09.g1 WGS-ZmaysF (JM107 adapted methyl filte... 42 3.3 2
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 34 3.3 6
(BP508102) Hydra magnipapillata cDNA, clone:hmp_01983. 30 3.4 3
(AC006281) Plasmodium falciparum chromosome 12 clone PFYACB8... 32 3.5 10
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 30 3.5 11
(BM651103) 17000687373274 A.Gam.ad.cDNA1 Anopheles gambiae c... 40 3.6 2
(ET730230) CHO_OF151xn19r1.ab1 CHO_OF Nicotiana tabacum geno... 34 3.6 3
(AL138654) Arabidopsis thaliana DNA chromosome 3, BAC clone ... 36 3.6 3
(AC163677) Mus musculus BAC clone RP24-86D16 from chromosome... 32 3.7 2
(AC165847) Bos taurus clone CH240-130A11, WORKING DRAFT SEQU... 32 3.7 2
(AC120426) Mus musculus chromosome 17 clone RP24-511A3 map 1... 32 3.7 2
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 34 3.8 8
(AC169676) Mus musculus BAC clone RP24-163P20 from chromosom... 32 3.8 2
(AC146316) Microcebus murinus clone CH257-437M14, complete s... 42 3.8 4
(CR749167) Zebrafish DNA sequence from clone DKEY-23A17 in l... 36 3.9 6
(DW261708) UI-S-GN0-abi-b-01-0-UI.s1 UI-S-GN0 Euprymna scolo... 30 3.9 3
(CU640372) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 3.9 7
(AC141106) Medicago truncatula clone mth2-33e18, complete se... 40 3.9 4
(DW275624) UI-S-GU0-adc-m-06-0-UI.s1 UI-S-GU0 Euprymna scolo... 30 3.9 3
(EJ286861) 1095368025614 Global-Ocean-Sampling_GS-27-01-01-1... 34 4.0 3
(AC213412) Populus trichocarpa clone POP011-O19, complete se... 34 4.1 7
(DC221436) Plasmodium berghei strain ANKA cDNA clone:MZ00424... 42 4.2 2
(CL612671) OR_BBa0004A06.f OR_BBa Oryza nivara genomic clone... 42 4.2 2
(DC210065) Plasmodium berghei strain ANKA cDNA clone:MG01067... 42 4.2 2
(AX392734) Sequence 24 from Patent WO0212526. 34 4.2 6
(AR707081) Sequence 24 from patent US 6933145. 34 4.2 6
(AX392736) Sequence 26 from Patent WO0212526. 32 4.2 6
(AR707083) Sequence 26 from patent US 6933145. 32 4.2 6
(CL612762) OR_BBa0004C06.f OR_BBa Oryza nivara genomic clone... 42 4.3 2
(DW268604) UI-S-GN1-abz-b-18-0-UI.s1 UI-S-GN1 Euprymna scolo... 30 4.4 3
(DW284763) UI-S-GU1-aeb-g-01-0-UI.s1 UI-S-GU1 Euprymna scolo... 30 4.4 3
(DW253702) UI-S-GB1-aah-h-04-0-UI.s1 UI-S-GB1 Euprymna scolo... 30 4.4 3
(AC149579) Medicago truncatula clone mth2-99d8, complete seq... 38 4.4 4
(CR759830) Zebrafish DNA sequence from clone DKEYP-79F12 in ... 34 4.4 7
(AM476691) Vitis vinifera contig VV78X253313.9, whole genome... 38 4.5 3
(DW279131) UI-S-GU0-adk-k-14-0-UI.s1 UI-S-GU0 Euprymna scolo... 30 4.5 3
(Z49912) Caenorhabditis elegans Cosmid T24F1. 34 4.5 4
(DV148898) CV03078A1F01.f1 CV03-normalized library Euphorbia... 40 4.6 2
(AM446864) Vitis vinifera contig VV78X065656.15, whole genom... 34 4.6 4
(DW255725) UI-S-GB1-aar-g-21-0-UI.s1 UI-S-GB1 Euprymna scolo... 30 4.6 3
(ER529103) 1093015734610 Global-Ocean-Sampling_GS-35-01-01-1... 38 4.6 2
(DW265296) UI-S-GN1-abs-j-08-0-UI.s1 UI-S-GN1 Euprymna scolo... 30 4.7 3
(DW266967) UI-S-GN1-abr-p-01-0-UI.s1 UI-S-GN1 Euprymna scolo... 30 4.7 3
(AM488453) Vitis vinifera contig VV79X002352.1, whole genome... 34 4.7 2
(DW253981) UI-S-GB1-aam-m-22-0-UI.s1 UI-S-GB1 Euprymna scolo... 30 4.7 3
(CG373107) OG0AT56TH ZM_0.7_1.5_KB Zea mays genomic clone ZM... 42 4.7 2
(FB744715) Sequence 38 from Patent WO2008011620. 40 4.9 6
(FB332198) Sequence 5 from Patent WO2007115213. 40 4.9 6
(CS448321) Sequence 5 from Patent WO2006117381. 40 4.9 6
(GM987241) Sequence 5 from Patent EP2009115. 40 4.9 6
(GM841734) Sequence 57 from Patent WO2008122447. 40 4.9 6
(EJ167653) 1092344071553 Global-Ocean-Sampling_GS-27-01-01-1... 38 4.9 2
(DW254543) UI-S-GB1-aao-m-11-0-UI.s1 UI-S-GB1 Euprymna scolo... 30 5.0 3
(DW283538) UI-S-HH0-adx-f-17-0-UI.s1 UI-S-HH0 Euprymna scolo... 30 5.0 3
(DC195657) Plasmodium berghei cDNA clone:LV000629, liver sta... 34 5.0 2
(DW285587) UI-S-GU1-aee-o-05-0-UI.s1 UI-S-GU1 Euprymna scolo... 30 5.0 3
(DW263015) UI-S-GN0-abl-f-23-0-UI.s1 UI-S-GN0 Euprymna scolo... 30 5.0 3
(AC149641) Medicago truncatula chromosome 7 clone mth2-55l11... 38 5.0 4
(DW265545) UI-S-GN1-abt-h-09-0-UI.s1 UI-S-GN1 Euprymna scolo... 30 5.0 3
(DW252411) UI-S-GB0-aad-d-04-0-UI.s1 UI-S-GB0 Euprymna scolo... 30 5.0 3
(EJ612268) 1092962052781 Global-Ocean-Sampling_GS-29-01-01-1... 38 5.0 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 30 5.0 15
(FB676003) Sequence 6 from Patent WO2007118704. 40 5.0 6
(AM446569) Vitis vinifera, whole genome shotgun sequence, co... 36 5.0 3
(DU819688) OG_ABa0077J23.r OG_ABa Oryza granulata genomic cl... 32 5.0 2
(AC184088) Populus trichocarpa clone Pop1-58J8, complete seq... 34 5.1 5
(AP010901) Solanum lycopersicum DNA, chromosome 8, clone: C0... 42 5.1 5
(FP236662) Brassica rapa subsp. pekinensis clone KBrH028G16,... 36 5.1 5
(AZ527945) ENTBV73TR Entamoeba histolytica Sheared DNA Entam... 36 5.2 2
(DW251479) UI-S-GB0-aaa-f-17-0-UI.s1 UI-S-GB0 Euprymna scolo... 30 5.2 3
(DW264059) UI-S-GN0-abm-f-05-0-UI.s1 UI-S-GN0 Euprymna scolo... 30 5.3 3
(DW267931) UI-S-GN1-aby-k-06-0-UI.s1 UI-S-GN1 Euprymna scolo... 30 5.3 3
(DW262498) UI-S-GN0-abj-k-14-0-UI.s1 UI-S-GN0 Euprymna scolo... 30 5.3 3
(BX544884) Zebrafish DNA sequence from clone DKEY-227M3 in l... 36 5.3 7
(CP001205) Borrelia burgdorferi ZS7, complete genome. 34 5.4 15
(EK440360) 1095522083435 Global-Ocean-Sampling_GS-31-01-01-1... 36 5.4 2
(CV771189) FGAS065582 Triticum aestivum FGAS: Library 2 Gate... 36 5.4 2
(AE000783) Borrelia burgdorferi B31, complete genome. 34 5.6 15
(AR554792) Sequence 9923 from patent US 6747137. 34 5.6 2
(CP000993) Borrelia recurrentis A1, complete genome. 36 5.7 14
(DW267570) UI-S-GN1-aca-g-02-0-UI.s1 UI-S-GN1 Euprymna scolo... 30 5.8 3
(DW274524) UI-S-GS1-aco-l-04-0-UI.s1 UI-S-GS1 Euprymna scolo... 30 5.8 3
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5... 36 5.8 8
(AY583855) Cucumis melo, *** SEQUENCING IN PROGRESS ***, 4 o... 34 6.1 5
(DW253124) UI-S-GB1-aah-a-05-0-UI.s1 UI-S-GB1 Euprymna scolo... 30 6.1 3
(EA702228) Sequence 81107 from patent US 7365185. 42 6.2 2
(DW256883) UI-S-GB1-aar-b-04-0-UI.s1 UI-S-GB1 Euprymna scolo... 30 6.2 3
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 32 6.3 13
(DW254753) UI-S-GB1-aai-h-09-0-UI.s1 UI-S-GB1 Euprymna scolo... 30 6.3 3
(AE014846) Plasmodium falciparum 3D7 chromosome 12, section ... 32 6.6 9
(AC209104) Populus trichocarpa clone POP085-O03, complete se... 30 6.7 7
(ER967543) AF__Bc0009M02r AF__Bc Aquilegia formosa genomic, ... 42 6.7 2
(EJ408578) 1093012115535 Global-Ocean-Sampling_GS-28-01-01-1... 28 6.8 4
(EK328604) 1095467015327 Global-Ocean-Sampling_GS-31-01-01-1... 32 6.8 3
(ER493316) 1093015336874 Global-Ocean-Sampling_GS-35-01-01-1... 36 7.0 3
(BX545857) Campylobacter jejuni. 38 7.3 5
(AX345668) Sequence 739 from Patent WO0200928. 36 7.3 4
(AL844507) Plasmodium falciparum chromosome 8. 36 7.3 14
(BV646792) S217P60268FH2.T0 Noemie Pan troglodytes troglodyt... 44 7.6 1
(AL928956) Mouse DNA sequence from clone RP23-74G16 on chrom... 44 7.6 1
(AL731810) Mouse DNA sequence from clone RP23-465B20 on chro... 44 7.6 1
(AL645685) Mouse DNA sequence from clone RP23-198I4 on chrom... 44 7.6 1
(AC125028) Mus musculus chromosome 16, clone RP24-85G10, com... 44 7.6 1
(AC183992) Pan troglodytes BAC clone CH251-50E12 from chromo... 44 7.6 1
(AP006865) Lotus japonicus genomic DNA, chromosome 2, clone:... 44 7.6 1
(AC234113) Solanum lycopersicum chromosome 12 clone LE_HBa-1... 44 7.6 1
(AC215395) Solanum lycopersicum chromosome 2 clone C02HBa014... 44 7.6 1
(AC149481) Populus trichocarpa clone Pop1-16J18, complete se... 44 7.6 1
(EF467861) Polymorphus brevis isolate 1495 cytochrome oxidas... 44 7.6 1
(DQ089717) Polymorphus brevis cytochrome oxidase subunit I g... 44 7.6 1
(AC113613) Homo sapiens BAC clone RP11-511I21 from 4, comple... 44 7.6 1
(AC104078) Homo sapiens BAC clone RP11-431M7 from 4, complet... 44 7.6 1
(AC160657) Bos taurus clone CH240-306J6, WORKING DRAFT SEQUE... 44 7.6 1
(AC150497) Bos taurus clone CH240-453E6, WORKING DRAFT SEQUE... 44 7.6 1
(AC137212) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 44 7.6 1
(AC133401) Rattus norvegicus clone CH230-26P6, *** SEQUENCIN... 44 7.6 1
(AC130736) Rattus norvegicus clone CH230-15O13, WORKING DRAF... 44 7.6 1
(AC109056) Rattus norvegicus clone CH230-104E12, *** SEQUENC... 44 7.6 1
(AC101662) Mus musculus chromosome 1 clone RP23-26K3 map 1, ... 44 7.6 1
(AC096366) Rattus norvegicus clone CH230-12I1, WORKING DRAFT... 44 7.6 1
(AC096057) Rattus norvegicus clone CH230-59D23, WORKING DRAF... 44 7.6 1
(EU139073) Solanum lycopersicum chromosome 9 clone C09SLe000... 44 7.6 1
(AC094178) Rattus norvegicus clone CH230-2P20, WORKING DRAFT... 44 7.6 1
(AC189911) Nomascus leucogenys leucogenys clone CH271-358H6,... 44 7.6 1
(AC185184) Felis catus clone RP86-424L12, WORKING DRAFT SEQU... 44 7.6 1
(AC178565) Strongylocentrotus purpuratus clone R3-3025M17, W... 44 7.6 1
(AC172500) Bos taurus clone CH240-80P12, WORKING DRAFT SEQUE... 44 7.6 1
(AC171593) Bos taurus clone CH240-172D19, WORKING DRAFT SEQU... 44 7.6 1
(AC170533) Bos taurus clone CH240-243A19, WORKING DRAFT SEQU... 44 7.6 1
(AC163904) Bos taurus clone CH240-263D3, WORKING DRAFT SEQUE... 44 7.6 1
(ET274023) S0164K02_SP6 CHORI-214 Salmo salar genomic clone ... 44 7.6 1
(ET246451) S0278K03_T7 CHORI-214 Salmo salar genomic clone S... 44 7.6 1
(EK224655) 1095460154512 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.6 1
(EJ392325) 1092963962775 Global-Ocean-Sampling_GS-28-01-01-1... 44 7.6 1
(DX556068) GH_MBb0071K17f GH_MBb Gossypium hirsutum genomic ... 44 7.6 1
(DU877698) 278906 Tomato HindIII BAC Library Solanum lycoper... 44 7.6 1
(DU336020) 1098312101643 CHORI-243 Ovis aries genomic clone ... 44 7.6 1
(AL258467) Tetraodon nigroviridis genome survey sequence PUC... 44 7.6 1
(DH726433) Rattus norvegicus DNA, BAC clone: RNB1-295J17, 3'... 44 7.6 1
(DH701840) Rattus norvegicus DNA, BAC clone: RNB1-262F04, 5'... 44 7.6 1
(DE135021) Oryzias latipes DNA, forward end of BAC clone: Mn... 44 7.6 1
(CU392459) Equus caballus GSS, BAC clone CH241-326C10, SP6 e... 44 7.6 1
(CU093882) Equus caballus GSS, BAC clone CH241-193N23, SP6 e... 44 7.6 1
(AG911977) Drosophila auraria DNA, clone: DAB1-006I04.F.fa, ... 44 7.6 1
(AG774091) Macaca fuscata fuscata DNA, clone: MSB2-251L07_F,... 44 7.6 1
(BH860630) ORNL105 Poplar BAC Library Populus trichocarpa ge... 44 7.6 1
(AG313165) Mus musculus molossinus DNA, clone:MSMg01-096I01.... 44 7.6 1
(EG958439) AU_Ich_006B_C06 Whole organism normalized cDNA li... 44 7.6 1
(AV800225) Arabidopsis thaliana cDNA clone:RAFL09-23-E05, 3'... 44 7.6 1
(DB748268) Apis mellifera head cDNA, RIKEN full-length enric... 44 7.6 1
(CV010570) atr01-34ms4-g07 Atr01 Amborella trichopoda cDNA c... 44 7.6 1
(CO166213) FLD1_60_E03.b1_A029 Root flooded Pinus taeda cDNA... 44 7.6 1
(CK573977) 2098 Plasmodium yoelii liver stage LCM cDNA libra... 44 7.6 1
(CD389277) AGENCOURT_14302817 NIH_MGC_173 Homo sapiens cDNA ... 44 7.6 1
(BQ119732) EST605308 mixed potato tissues Solanum tuberosum ... 44 7.6 1
(BM027215) GIT0000530 Root-induced cDNA library from Glomus ... 44 7.6 1
(BG238987) sab57b01.y1 Gm-c1043 Glycine max cDNA clone GENOM... 44 7.6 1
(BF188130) EST444417 potato stolon, Cornell University Solan... 44 7.6 1
(BE460253) EST411744 tomato breaker fruit, TIGR Solanum lyco... 44 7.6 1
(FM980196) Glossina morsitans morsitans EST, clone GMsg163d0... 44 7.6 1
(FM965318) Glossina morsitans morsitans EST, clone GMsg12c06... 44 7.6 1
(FM961556) Glossina morsitans morsitans EST, clone GMsg06b02... 44 7.6 1
(FD431542) Atr01b_114_H06_C010.g1 FGP Male Amborella trichop... 44 7.6 1
(FD431254) Atr01b_110_C12_C010.g1 FGP Male Amborella trichop... 44 7.6 1
(CP001022) Exiguobacterium sibiricum 255-15, complete genome. 44 7.6 1
(CP000361) Arcobacter butzleri RM4018, complete genome. 44 7.6 1
(BA000016) Clostridium perfringens str. 13 DNA, complete gen... 44 7.6 1
(AC208933) Populus trichocarpa clone JGIACSB1081-H15, comple... 32 7.9 7
(AC144483) Medicago truncatula chromosome 8 clone mth2-12f13... 36 8.1 6
(CT025842) Medicago truncatula chromosome 5 clone mth2-54i22... 32 8.2 5
(AC105927) Oryza sativa Japonica Group chromosome 3 clone OJ... 42 8.3 2
(BD460459) Diagnosis of Diseases Associated with Cell Cycle. 30 8.5 5
(BD452381) Diagnosis of Diseases Associated with Cell Cycle. 30 8.5 5
(AX348772) Sequence 230 from Patent WO0202807. 30 8.5 5
(AX344389) Sequence 236 from Patent WO0200926. 30 8.5 5
(AX251995) Sequence 256 from Patent WO0168911. 30 8.5 5
(AL034556) Plasmodium falciparum MAL3P5. 32 8.5 7
(AP001884) Homo sapiens genomic DNA, chromosome 11q clone:RP... 42 8.5 3
(AC117452) Homo sapiens 3 BAC RP11-341J3 (Roswell Park Cance... 36 8.9 6
(AC174355) Medicago truncatula chromosome 8 clone mth2-18d3,... 40 8.9 5
(CS468878) Sequence 69 from Patent EP1748080. 30 9.0 11
(CS468877) Sequence 68 from Patent EP1748080. 30 9.0 11
(CS419355) Sequence 69 from Patent WO2006094836. 30 9.0 11
(CS419354) Sequence 68 from Patent WO2006094836. 30 9.0 11
(AF462070) Lactococcus lactis insertion sequence IS1, comple... 40 9.0 2
(DD093677) SELF-CONTAINING LACTOCOCCUS STRAIN. 40 9.1 2
(AX597655) Sequence 5 from Patent WO02090551. 40 9.1 2
(DD093676) SELF-CONTAINING LACTOCOCCUS STRAIN. 40 9.1 2
(AX597653) Sequence 3 from Patent WO02090551. 40 9.1 2
(DE473997) Bombyx mori genomic DNA, Fosmid clone:GBMFno75_f1... 36 9.3 2
(AX349036) Sequence 494 from Patent WO0202807. 30 9.3 6
(AC096914) Homo sapiens chromosome 3 clone RP11-16E8, comple... 38 9.4 5
(CR352230) Zebrafish DNA sequence from clone CH211-106G8 in ... 40 9.6 5
(AC234706) Solanum tuberosum chromosome 6 clone RHPOTKEY093J... 36 9.8 6
(CP000107) Ehrlichia canis str. Jake, complete genome. 36 9.9 15
(CU928052) Brassica rapa subsp. pekinensis clone KBrH099M02,... 32 9.9 5

>(BJ371786) Dictyostelium discoideum cDNA clone:ddc1a14, 3' end,
single read.
Length = 753

Score = 624 bits (315), Expect(3) = 0.0
Identities = 315/315 (100%)
Strand = Plus / Minus


Query: 304 caagtatagcatttaaattgggtaaagaatttgtaattggtaatttattcattgatcaaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 caagtatagcatttaaattgggtaaagaatttgtaattggtaatttattcattgatcaaa 391


Query: 364 ttatattatttttagaatttctatatggtattgcattagagattgaaactaatttacaat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ttatattatttttagaatttctatatggtattgcattagagattgaaactaatttacaat 331


Query: 424 attgggaatcaattgaaccaacaatatactatttacaaaagtcacctttattttggttaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 attgggaatcaattgaaccaacaatatactatttacaaaagtcacctttattttggttaa 271


Query: 484 aatattatcatcaacaattgaatagaagaatacaattctcaaataaatttagtgaacttc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aatattatcatcaacaattgaatagaagaatacaattctcaaataaatttagtgaacttc 211


Query: 544 ataatttaaaacaaccaaaaccaatactttatatttcaaatcttttaaataaagtaaatt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ataatttaaaacaaccaaaaccaatactttatatttcaaatcttttaaataaagtaaatt 151


Query: 604 cttttattttaaata 618
|||||||||||||||
Sbjct: 150 cttttattttaaata 136

Score = 315 bits (159), Expect(3) = 0.0
Identities = 159/159 (100%)
Strand = Plus / Minus


Query: 1 ttatcattataatataccaacatcacttaaagatattaaatcaataattattaaatctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ttatcattataatataccaacatcacttaaagatattaaatcaataattattaaatctca 694


Query: 61 aaaattaaaagggtcaattacaatctttaaaacaagtttttaaacaaaatataattataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 aaaattaaaagggtcaattacaatctttaaaacaagtttttaaacaaaatataattataa 634


Query: 121 ataatcaagaagtaattgaacaacaagtagatgctatta 159
|||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ataatcaagaagtaattgaacaacaagtagatgctatta 595

Score = 61.9 bits (31), Expect(3) = 0.0
Identities = 31/31 (100%)
Strand = Plus / Minus


Query: 722 taataagagtcatcagtcatcatcatcatcg 752
|||||||||||||||||||||||||||||||
Sbjct: 32 taataagagtcatcagtcatcatcatcatcg 2

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 888,192,011
Number of extensions: 65711740
Number of successful extensions: 6943225
Number of sequences better than 10.0: 394
Length of query: 752
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 728
Effective length of database: 99,340,224,878
Effective search space: 72319683711184
Effective search space used: 72319683711184
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.22
Homology vs Protein
Query= Contig-U03062-1 (Contig-U03062-1Q) /CSM_Contig/Contig-U03062-1Q.Seq.d
(752 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q55GJ3) RecName: Full=Nuclear control of ATPase protein 2; 228 2e-58
CU179680_299(CU179680|pid:none) Mycoplasma agalactiae PG2 chromo... 34 4.3
AF495908_1(AF495908|pid:none) Homo sapiens BJ-HCC-5 mRNA, comple... 34 5.7
T28866(T28866) hypothetical protein R03H4.1 - Caenorhabditis ele... 34 5.7
(Q54E04) RecName: Full=Vacuolar proton translocating ATPase 100 ... 33 7.4
U38803_1(U38803|pid:none) Dictyostelium discoideum vacuolar prot... 33 7.4
CP000633_460(CP000633|pid:none) Agrobacterium vitis S4 chromosom... 33 7.4

>(Q55GJ3) RecName: Full=Nuclear control of ATPase protein 2;
Length = 923

Score = 228 bits (581), Expect = 2e-58
Identities = 111/111 (100%), Positives = 111/111 (100%)
Frame = +3

Query: 288 NIEYNPSIAFKLGKEFVIGNLFIDQIILFLEFLYGIALEIETNLQYWESIEPTIYYLQKS 467
NIEYNPSIAFKLGKEFVIGNLFIDQIILFLEFLYGIALEIETNLQYWESIEPTIYYLQKS
Sbjct: 218 NIEYNPSIAFKLGKEFVIGNLFIDQIILFLEFLYGIALEIETNLQYWESIEPTIYYLQKS 277

Query: 468 PLFWLKYYHQQLNRRIQFSNKFSELHNLKQPKPILYISNLLNKVNSFILNK 620
PLFWLKYYHQQLNRRIQFSNKFSELHNLKQPKPILYISNLLNKVNSFILNK
Sbjct: 278 PLFWLKYYHQQLNRRIQFSNKFSELHNLKQPKPILYISNLLNKVNSFILNK 328

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 560,196,589
Number of extensions: 8011121
Number of successful extensions: 18405
Number of sequences better than 10.0: 7
Number of HSP's gapped: 18398
Number of HSP's successfully gapped: 7
Length of query: 250
Length of database: 1,051,180,864
Length adjustment: 125
Effective length of query: 125
Effective length of database: 646,610,989
Effective search space: 80826373625
Effective search space used: 80826373625
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.66 gvh: 0.19 alm: 0.31 top: 0.33 tms: 0.07 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: mitochondrial
24.0 %: nuclear
24.0 %: endoplasmic reticulum
20.0 %: cytoplasmic
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for Contig-U03062-1 is mit

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0