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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15533-1
Contig ID Contig-U15533-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15533-1 (Contig-U15533-1Q) /CSM_Contig/Contig-U15533-1Q.Seq.d
AACTCAAAAATCCAAAAATAACCAAATTTAAAAAGAAATAAAATAAAAAA
ATAAAAAAATGGATGAAGTATTAGAAATGATTGCTGATGCAGTTTCCTCA
TTGGTTGTTGCAATCACAGATAGTGAAGAGAAAAATACTCTTTTTGGTGA
TATGGTACCAGGTGTTGAATTAATTCAACAAGCAGTTAATGGAATGGCAG
AAGCAGCAGAGGAAACAGTATCATTAATTGATGAAGAGTTTATTGGACAA
TTAGAGAGTACATCAAAACAATTAAAGAATTCAGCAGGTCAATTATATGT
TCATGCAGTTCGTGCAAGAGAAGATCCATGGAATAGAGTACCACAAAAGG
ATGCAATTAAAGCAGCCAAACAAATTCTTCAAAATGTTGTATTATTGGTA
TTGATTGAAGAGCAATCAAACATTAAGGTATTGGTAAACATTGCAAAGAA
AGCAGCTGAAGGTGTAAGAAGAATCGATGAGATTGAAAATATTAAGCAAT
TGGATGTTATGATTGGTGACGTAAATCAATTACAAAATGAATTGGTTAAA
AGATCACAACGTCGTTCAGAGGGTAGCCACAATCCAGAGCTACGTTCAAA
ACTTGAAGATATCGCCACAATGGTAAACATACTCTCTGAACAACATCAAG
CAAGTGCTCGTGATGTTTGTAGAAATCCAAGAGAGGAAACCCTAAGATCA
AAACGTTCAGAACTTTCAAGTAAATTATTATCAGCAATCGATGATTTAAT
CTACACTATTAAATTGATTTTCGAGAATAATACAAAATTCGTTGATCTCG
CTTTCAAATGGAAACCAGTTCGTACAATGGCTGAAGATGAAGTTACTCGT
GCCTCCGCTGTTCTTATTGATAATCTTCGTACACTTCCAAAATCAATTGA
GGCTGGTAATGGTCCAGCAGCAGCTAGAGAGATTGTCAATGCTGCAAACT
TACAAATTTCAAATGCAATCATCGTTGCAAATCGTTGTCAAGATCCAGTT
AAAAAGAAAATGTTATTGAAACAAATTGAAGAATTAAAGAAATTGACACC
AATGCTTATCTCTGCTATGAAACCAGTTTTGGAGAATCCAAATGATCAAG
AAGCTCAAAAACATTTAGAATCTGTAATTTATTCAACCCAAAAAGCATCT
GAAGCATTGGCAACCCGCAGTTGTTTCTTCACCAGCAGAAATTGTTGCAG
CATCTGGTGTTTCATTAGCAAGAGATTTAGATTCTTTAGAGGAAGCAATT
G----------GAGATTTAGATTCTTTAGAGGAAGCAATTGCATCAGGTG
ATAAGAAACGTGCTCAAGTTATTCTCTCTCATATTCCAAGTGCAATTGAT
AAACATATTGAATTGGCAAATGCTCTCTTAGAGACTATTACAGATCCAGG
TCAACGTCATCAAATTAAACAATCCATTGAAAGATTACAAACACTTAAAC
CAAGAATCATTGAAAATGCAAATAGAGCAATCGCCAATCCAAATGACCAT
GAAGCTCGTAAAAATCTTTCATCAGATATTAAAGAAGCCAAAAAAGCAAT
TGGTCAAATCAGTCAACCATATGAAGTCGTTTCAGCTCTCAATACTAAAA
TTCATAATGATCTTGATTCACTCATTAAATGTATCGATGAAGGTGGTCCA
GATAGCAAGTTAAGGTGTTCAATATGCTAAGATATAGCAAACTCTATTAA
AAAACAAATTGAAGCAGCCGAGGCATACGCTCAAACTATCACTGATCCAG
ATCGTAAGAAAGAGATTTAGATTCTTTAGAGGAAGCAATTGCATCAGGTG
ATAAGAAACGTGCTCAAGTTATTCTCTCTCATATTCCAAGTGCAATTGAT
AAACATATTGAATTGGCAAATGCTCTCTTAGAGACTATTACAGATCCAGG
TCAACGTCATCAAATTAAACAATCCATTGAAAGATTACAAACACTTAAAC
CAAGAATCATTGAAAATGCAAATAGAGCAATCGCCAATCCAAATGACCAT
GAAGCTCGTAAAAATCTTTCATCAGATATTAAAGAAGCCAAAAAAGCAAT
TGGTCAAATCAGTCAACCATATGAAGTCGTTTCAGCTCTCAATACTAAAA
TTCATAATGATCTTGATTCACTCATTAAATGTATCGATGAAGGTGGTCCA
GATATGCAAGTTAAAGGTGTTCAATATGCTAAAGATATAGCAAACTCTAT
TAAAAAACAAATTGAAGCAGCCGAGGCATACGCTCAAACTATCACTGATC
CAGATCGTAAGAAACAAGTANTAGATTCAGATTGAGCNGGCTTAAAAGAG
ACTTACTCCNCAACTTTTAGAAGCAATTAGAGCATGTTTAGCAAATCCTG
ATNATAAAGAAGCTCGTAAGAGACTCGATGATGTCGTCAGAAGAGTTAAA
GAAGCAAGTAGTAATCTTAGTCAAGTCATTCAACCAACTGCTGATGAACT
TAAAGAAGAAAAGAGAAAGAGAAATGAAGAGATTGCAAGAATTGAAGCAG
AGGAAAAAGCAAAAGCTCGTGCCTTATTAAAAGCTGCTGAATTGGCAAGA
ATTGAAGCAGAGGAAGAAAAGAAACGTTTGGCTATAATTGAAGAAGAAAA
GAAACGTTTAGCTGCAGAGGAAGAGGAAAGAAAACGTGCTCCAAAACTCG
TCGTTCCAGAAGGTCCAGTTAATAAAGCAGTTTTCGGTGCTGCCGCGTGA
TGTCGCTCAAGCTTTAGAATCAAAAGTTCGTGATGGTACACCATTGGGTA
TACTCGTTCAATTATCAGGACGAAATCGCTCAACAAATGGCTTTAATCGC
AAGTTTCGCAATGAATGGTGATGTTAAAGGTATGATTACTGCTGCTCGTA
AAATCGCAGATACCATCAAACAAGTTCAAACTCAAGCTAAGACATATCGC
TGACAATCTGCACTGATCCACGTTTAAAACAAAATGTTTTAACCTATTGC
GATTGTGGTGGTAATTTCAGTACCCAACTTACAAATCCTCTGCGCCGTTA
AATCAAATGATTTTAATGATCCAACCGCTGAAGAACAATTAGTTACTTGT
GCTAAAGGTTTATCAGGTGCTGTAATTAATACTTGTAAAATCTTCTGAAG
CTGACATCAATTAACCAAAGTAAAAGTACCACAACAATAAA
Gap gap included
Contig length 3131
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 3876728
End point 3878670
Strand (PLUS/MINUS) PLUS
Number of clones 60
Number of EST 66
Link to clone list U15533
List of clone(s) 

est1=AHP475F,-10,201
est2=AHE467F,26,569
est3=AHC483F,30,568
est4=AHG564F,79,609
est5=AHJ471F,163,804
est6=AHA763F,249,855
est7=CHG256F,252,724
est8=AHH249F,277,833
est9=AFB214F,508,1162
est10=AFK590F,609,1164
est11=AFI812F,645,1251
est12=AFB214H,1252,2254
est13=AHK237Z,1681,2399
est14=AHI623Z,2357,3099
est15=AHL208Z,2357,3130
est16=AHL395Z,2357,3131
est17=AHM139Z,2357,3131
est18=AHB809Z,2358,3109
est19=AHA532Z,2360,3126
est20=AHB675Z,2360,3083
est21=AHC587Z,2360,3131
est22=AHE370Z,2360,3130
est23=AHE669Z,2360,3128
est24=AHK311Z,2360,3129
est25=SHF133Z,2360,3124
est26=AHC121Z,2361,3083
est27=AHC676Z,2361,2854
est28=AHD856Z,2361,2855
est29=AHE141Z,2361,3130
est30=AHE467Z,2361,3131
est31=AHO720Z,2361,3131
est32=AHA637Z,2362,2905
est33=AHF150Z,2362,3128
est34=AHF526Z,2362,3131
est35=AHH249Z,2362,3131
est36=AHK428Z,2362,3120
est37=AHD320Z,2363,3131
est38=AHH191Z,2365,2870
est39=AFI812Z,2383,3127
est40=SHL704Z,2383,3125
est41=AHB106Z,2385,3108
est42=AHE835Z,2385,3131
est43=AHF329Z,2385,3104
est44=AHF565Z,2385,2982
est45=AHI851Z,2385,3098
est46=AHM691Z,2385,2854
est47=AHC624Z,2386,3110
est48=AHI860Z,2386,3031
est49=AHQ811Z,2431,2851
est50=AHL349Z,2437,3103
est51=AHN714Z,2440,3131
est52=AHB350Z,2459,3092
est53=AHN320Z,2464,2995
est54=AHP403Z,2473,3131
est55=AHP245Z,2522,3026
est56=AHG630Z,2535,3130
est57=AHG871Z,2536,3131
est58=AHP202Z,2545,3131
est59=AHH181Z,2550,3102
est60=AHP578Z,2554,3120
est61=AHP628Z,2579,3130
est62=SHK821Z,2582,3111
est63=AHC483Z,2658,2866
est64=AFB214Z,2763,3110
est65=AHG578Z,2763,2889
est66=AHE534Z,2920,3131
Translated Amino Acid sequence 
tqksknnqi*keik*KNKKMDEVLEMIADAVSSLVVAITDSEEKNTLFGDMVPGVELIQQ
AVNGMAEAAEETVSLIDEEFIGQLESTSKQLKNSAGQLYVHAVRAREDPWNRVPQKDAIK
AAKQILQNVVLLVLIEEQSNIKVLVNIAKKAAEGVRRIDEIENIKQLDVMIGDVNQLQNE
LVKRSQRRSEGSHNPELRSKLEDIATMVNILSEQHQASARDVCRNPREETLRSKRSELSS
KLLSAIDDLIYTIKLIFENNTKFVDLAFKWKPVRTMAEDEVTRASAVLIDNLRTLPKSIE
AGNGPAAAREIVNAANLQISNAIIVANRCQDPVKKKMLLKQIEELKKLTPMLISAMKPVL
ENPNDQEAQKHLESVIYSTQKASEALATRSCFFTSRNCCSIWCFISKRFRFFRGSN---

---DLDSLEEAIASGDKKRAQVILSHIPSAIDKHIELANALLETITDPGQRHQIKQSIER
LQTLKPRIIENANRAIANPNDHEARKNLSSDIKEAKKAIGQISQPYEVVSALNTKIHNDL
DSLIKCIDEGGPDSKLRCSIC*diansikkqieaaeayaqtitdpdrkkei*il*rkqlh
qvirnvlklfslifqvqlinilnwqmls*rllqiqvnviklnnplkdykhlnqeslkmqi
eqspiqmtmklvkifhqilkkpkkqlvksvnhmksfqlsilkfimilihslnvsmkvvqi
cklkvfnmlki*qtllknklkqprhtlklsliqivrnkx*iqiexa*krltpqlleaira
clanpdxkearkrlddvvrrvkeassnlsqviqptadelkeekrkrneeiarieaeekak
arallkaaelarieaeeekkrlaiieeekkrlaaeeeerkrapklvvpegpvnkavfgaa
a*crssfrikss*wytigytrsiirtkslnkwl*sqvsq*mvmlkv*llllvksqipsnk
fklklrhiadnlh*stfktkcfnllrlww*fqyptykssaplnqmilmiqplknn*llvl
kvyqvl*lilvksseadin*pk*kyhnnk
Translated Amino Acid sequence (All Frames) 
Frame A:
nskiqk*pnlkrnkikk*kng*sirndc*csfligccnhr**rekysfw*ygtrc*inst
ss*wngrssrgnsiin**rvywtireyiktikefsrsiicscssckrrsme*sttkgcn*
ssqtnsskcciigid*raikh*gigkhckess*rckknr*d*ky*aigcydw*rksitk*
ig*kittsfrg*pqsratfkt*ryrhngkhtl*ttsskcs*cl*kskrgnpkiktfrtfk
*iiisnr*fnlhy*idfre*ykir*srfqmetssyng*r*sysclrcsy**ssytskin*
gw*wssss*rdcqcckltnfkcnhrckslsrss*kenvietn*rikeidtnaylcyetsf
gesk*srssktfricnlfnpksi*signpqlflhqqkllqhlvfh*qei*il*rkql---

---ei*il*rkqlhqvirnvlklfslifqvqlinilnwqmls*rllqiqvnviklnnplk
dykhlnqeslkmqieqspiqmtmklvkifhqilkkpkkqlvksvnhmksfqlsilkfimi
lihslnvsmkvvqias*gvqyaki*qtllknklkqprhtlklsliqivrkrfrffrgsnc
ir**etcssyslsyskcn**ty*igkcslrdyyrsrstssn*tih*kitnt*tknh*kck
*snrqsk*p*ss*ksfiry*rsqksnwsnqsti*srfssqy*ns**s*fth*myr*rwsr
yas*rcsic*ryskly*ktn*ssrgirsnyh*srs*etsxrfrlsxlkrdllxnf*kqle
hv*qilxikklvrdsmmsseelkkqvvilvksfnqllmnlkkkreremkrlqelkqrkkq
klvpy*kllnwqelkqrkkrnvwl*lkkkrnv*lqrkrkenvlqnssfqkvqlikqfsvl
prdvaqaleskvrdgtplgilvqlsgrnrstngfnrkfrnew*c*rydyccs*nrryhqt
ssnss*disltictdprlkqnvltycdcggnfstqltnplrr*ik*f**snr*rtisylc
*rfirccn*yl*nllkltsinqsksttti

Frame B:
tqksknnqi*keik*KNKKMDEVLEMIADAVSSLVVAITDSEEKNTLFGDMVPGVELIQQ
AVNGMAEAAEETVSLIDEEFIGQLESTSKQLKNSAGQLYVHAVRAREDPWNRVPQKDAIK
AAKQILQNVVLLVLIEEQSNIKVLVNIAKKAAEGVRRIDEIENIKQLDVMIGDVNQLQNE
LVKRSQRRSEGSHNPELRSKLEDIATMVNILSEQHQASARDVCRNPREETLRSKRSELSS
KLLSAIDDLIYTIKLIFENNTKFVDLAFKWKPVRTMAEDEVTRASAVLIDNLRTLPKSIE
AGNGPAAAREIVNAANLQISNAIIVANRCQDPVKKKMLLKQIEELKKLTPMLISAMKPVL
ENPNDQEAQKHLESVIYSTQKASEALATRSCFFTSRNCCSIWCFISKRFRFFRGSN---

---rfrffrgsncir**etcssyslsyskcn**ty*igkcslrdyyrsrstssn*tih*k
itnt*tknh*kck*snrqsk*p*ss*ksfiry*rsqksnwsnqsti*srfssqy*ns**s
*fth*myr*rwsr*qvkvfnmlryskly*ktn*ssrgirsnyh*srs*erdldsleeaia
sgdkkraqvilshipsaidkhielanalletitdpgqrhqikqsierlqtlkpriienan
raianpndhearknlssdikeakkaigqisqpyevvsalntkihndldslikcideggpd
mqvkgvqyakdiansikkqieaaeayaqtitdpdrkkqvxdsd*aglketysxtfrsn*s
mfsks*x*rss*etr*crqks*rsk**s*sshstnc**t*rrkekek*rdckn*srgksk
sscliksc*igkn*srgrketfgyn*rrketfscrgrgkktcsktrrsrrss**ssfrcc
rvmslkl*nqkfvmvhhwvysfnyqdeiaqqmaliasfamngdvkgmitaarkiadtikq
vqtqaktyr*qsalihv*nkmf*piaivvvisvpnlqilcavksndfndptaeeqlvtca
kglsgavintckif*s*hqltkvkvpqq*

Frame C:
lknpkitkfkkk*nkkikkwmky*k*llmqfphwllqsqivkrkilflviwyqvln*fnk
qlmewqkqqrkqyh*lmkslldn*rvhqnn*riqqvnymfmqfvqekihgieyhkrmqlk
qpnkffkmlyywy*lksnqtlryw*tlqrkqlkv*eesmrlkilsnwml*lvt*inykmn
wlkdhnvvqrvatiqsyvqnlkispqw*tyslnnikqvlvmfveiqerkp*dqnvqnfqv
nyyqqsmi*stlln*fsriiqnslislsngnqfvqwlkmkllvpplflliifvhfqnqlr
lvmvqqqlerlsmlqtykfqmqsslqivvkiqlkrkcy*nklkn*rn*hqclsll*nqfw
riqmikklkni*nl*fiqpkkhlkhwqpavvsspaeivaasgvslardldsleeai---

---DLDSLEEAIASGDKKRAQVILSHIPSAIDKHIELANALLETITDPGQRHQIKQSIER
LQTLKPRIIENANRAIANPNDHEARKNLSSDIKEAKKAIGQISQPYEVVSALNTKIHNDL
DSLIKCIDEGGPDSKLRCSIC*diansikkqieaaeayaqtitdpdrkkei*il*rkqlh
qvirnvlklfslifqvqlinilnwqmls*rllqiqvnviklnnplkdykhlnqeslkmqi
eqspiqmtmklvkifhqilkkpkkqlvksvnhmksfqlsilkfimilihslnvsmkvvqi
cklkvfnmlki*qtllknklkqprhtlklsliqivrnkx*iqiexa*krltpqlleaira
clanpdxkearkrlddvvrrvkeassnlsqviqptadelkeekrkrneeiarieaeekak
arallkaaelarieaeeekkrlaiieeekkrlaaeeeerkrapklvvpegpvnkavfgaa
a*crssfrikss*wytigytrsiirtkslnkwl*sqvsq*mvmlkv*llllvksqipsnk
fklklrhiadnlh*stfktkcfnllrlww*fqyptykssaplnqmilmiqplknn*llvl
kvyqvl*lilvksseadin*pk*kyhnnk
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15533-1 (Contig-U15533-1Q)
/CSM_Contig/Contig-U15533-1Q.Seq.d
         (3141 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15533-1 (Contig-U15533-1Q) /CSM_Contig/Conti...  4657  0.0
Contig-U12697-1 (Contig-U12697-1Q) /CSM_Contig/Conti...    44  0.001
Contig-U14180-1 (Contig-U14180-1Q) /CSM_Contig/Conti...    40  0.020
Contig-U16376-1 (Contig-U16376-1Q) /CSM_Contig/Conti...    38  0.081
Contig-U15280-1 (Contig-U15280-1Q) /CSM_Contig/Conti...    38  0.081
Contig-U11362-1 (Contig-U11362-1Q) /CSM_Contig/Conti...    38  0.081
Contig-U10731-1 (Contig-U10731-1Q) /CSM_Contig/Conti...    38  0.081
Contig-U06184-1 (Contig-U06184-1Q) /CSM_Contig/Conti...    38  0.081
Contig-U15581-1 (Contig-U15581-1Q) /CSM_Contig/Conti...    36  0.32
Contig-U14079-1 (Contig-U14079-1Q) /CSM_Contig/Conti...    36  0.32

>Contig-U15533-1 (Contig-U15533-1Q) /CSM_Contig/Contig-U15533-1Q.Seq.d
          Length = 3141

 Score = 4657 bits (2349), Expect = 0.0
 Identities = 2391/2391 (100%)
 Strand = Plus / Plus

                                                                        
Query: 60   tggatgaagtattagaaatgattgctgatgcagtttcctcattggttgttgcaatcacag 119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60   tggatgaagtattagaaatgattgctgatgcagtttcctcattggttgttgcaatcacag 119

                                                                        
Query: 120  atagtgaagagaaaaatactctttttggtgatatggtaccaggtgttgaattaattcaac 179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120  atagtgaagagaaaaatactctttttggtgatatggtaccaggtgttgaattaattcaac 179

                                                                        
Query: 180  aagcagttaatggaatggcagaagcagcagaggaaacagtatcattaattgatgaagagt 239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180  aagcagttaatggaatggcagaagcagcagaggaaacagtatcattaattgatgaagagt 239

                                                                        
Query: 240  ttattggacaattagagagtacatcaaaacaattaaagaattcagcaggtcaattatatg 299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240  ttattggacaattagagagtacatcaaaacaattaaagaattcagcaggtcaattatatg 299

                                                                        
Query: 300  ttcatgcagttcgtgcaagagaagatccatggaatagagtaccacaaaaggatgcaatta 359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300  ttcatgcagttcgtgcaagagaagatccatggaatagagtaccacaaaaggatgcaatta 359

                                                                        
Query: 360  aagcagccaaacaaattcttcaaaatgttgtattattggtattgattgaagagcaatcaa 419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360  aagcagccaaacaaattcttcaaaatgttgtattattggtattgattgaagagcaatcaa 419

                                                                        
Query: 420  acattaaggtattggtaaacattgcaaagaaagcagctgaaggtgtaagaagaatcgatg 479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420  acattaaggtattggtaaacattgcaaagaaagcagctgaaggtgtaagaagaatcgatg 479

                                                                        
Query: 480  agattgaaaatattaagcaattggatgttatgattggtgacgtaaatcaattacaaaatg 539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480  agattgaaaatattaagcaattggatgttatgattggtgacgtaaatcaattacaaaatg 539

                                                                        
Query: 540  aattggttaaaagatcacaacgtcgttcagagggtagccacaatccagagctacgttcaa 599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540  aattggttaaaagatcacaacgtcgttcagagggtagccacaatccagagctacgttcaa 599

                                                                        
Query: 600  aacttgaagatatcgccacaatggtaaacatactctctgaacaacatcaagcaagtgctc 659
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600  aacttgaagatatcgccacaatggtaaacatactctctgaacaacatcaagcaagtgctc 659

                                                                        
Query: 660  gtgatgtttgtagaaatccaagagaggaaaccctaagatcaaaacgttcagaactttcaa 719
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660  gtgatgtttgtagaaatccaagagaggaaaccctaagatcaaaacgttcagaactttcaa 719

                                                                        
Query: 720  gtaaattattatcagcaatcgatgatttaatctacactattaaattgattttcgagaata 779
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720  gtaaattattatcagcaatcgatgatttaatctacactattaaattgattttcgagaata 779

                                                                        
Query: 780  atacaaaattcgttgatctcgctttcaaatggaaaccagttcgtacaatggctgaagatg 839
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780  atacaaaattcgttgatctcgctttcaaatggaaaccagttcgtacaatggctgaagatg 839

                                                                        
Query: 840  aagttactcgtgcctccgctgttcttattgataatcttcgtacacttccaaaatcaattg 899
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840  aagttactcgtgcctccgctgttcttattgataatcttcgtacacttccaaaatcaattg 899

                                                                        
Query: 900  aggctggtaatggtccagcagcagctagagagattgtcaatgctgcaaacttacaaattt 959
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900  aggctggtaatggtccagcagcagctagagagattgtcaatgctgcaaacttacaaattt 959

                                                                        
Query: 960  caaatgcaatcatcgttgcaaatcgttgtcaagatccagttaaaaagaaaatgttattga 1019
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960  caaatgcaatcatcgttgcaaatcgttgtcaagatccagttaaaaagaaaatgttattga 1019

                                                                        
Query: 1020 aacaaattgaagaattaaagaaattgacaccaatgcttatctctgctatgaaaccagttt 1079
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 aacaaattgaagaattaaagaaattgacaccaatgcttatctctgctatgaaaccagttt 1079

                                                                        
Query: 1080 tggagaatccaaatgatcaagaagctcaaaaacatttagaatctgtaatttattcaaccc 1139
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 tggagaatccaaatgatcaagaagctcaaaaacatttagaatctgtaatttattcaaccc 1139

                                                                        
Query: 1140 aaaaagcatctgaagcattggcaacccgcagttgtttcttcaccagcagaaattgttgca 1199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1140 aaaaagcatctgaagcattggcaacccgcagttgtttcttcaccagcagaaattgttgca 1199

                                                                        
Query: 1200 gcatctggtgtttcattagcaagagatttagattctttagaggaagcaattgnnnnnnnn 1259
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1200 gcatctggtgtttcattagcaagagatttagattctttagaggaagcaattgnnnnnnnn 1259

                                                                        
Query: 1260 nngagatttagattctttagaggaagcaattgcatcaggtgataagaaacgtgctcaagt 1319
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1260 nngagatttagattctttagaggaagcaattgcatcaggtgataagaaacgtgctcaagt 1319

                                                                        
Query: 1320 tattctctctcatattccaagtgcaattgataaacatattgaattggcaaatgctctctt 1379
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1320 tattctctctcatattccaagtgcaattgataaacatattgaattggcaaatgctctctt 1379

                                                                        
Query: 1380 agagactattacagatccaggtcaacgtcatcaaattaaacaatccattgaaagattaca 1439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1380 agagactattacagatccaggtcaacgtcatcaaattaaacaatccattgaaagattaca 1439

                                                                        
Query: 1440 aacacttaaaccaagaatcattgaaaatgcaaatagagcaatcgccaatccaaatgacca 1499
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1440 aacacttaaaccaagaatcattgaaaatgcaaatagagcaatcgccaatccaaatgacca 1499

                                                                        
Query: 1500 tgaagctcgtaaaaatctttcatcagatattaaagaagccaaaaaagcaattggtcaaat 1559
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1500 tgaagctcgtaaaaatctttcatcagatattaaagaagccaaaaaagcaattggtcaaat 1559

                                                                        
Query: 1560 cagtcaaccatatgaagtcgtttcagctctcaatactaaaattcataatgatcttgattc 1619
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1560 cagtcaaccatatgaagtcgtttcagctctcaatactaaaattcataatgatcttgattc 1619

                                                                        
Query: 1620 actcattaaatgtatcgatgaaggtggtccagatagcaagttaaggtgttcaatatgcta 1679
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1620 actcattaaatgtatcgatgaaggtggtccagatagcaagttaaggtgttcaatatgcta 1679

                                                                        
Query: 1680 agatatagcaaactctattaaaaaacaaattgaagcagccgaggcatacgctcaaactat 1739
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1680 agatatagcaaactctattaaaaaacaaattgaagcagccgaggcatacgctcaaactat 1739

                                                                        
Query: 1740 cactgatccagatcgtaagaaagagatttagattctttagaggaagcaattgcatcaggt 1799
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1740 cactgatccagatcgtaagaaagagatttagattctttagaggaagcaattgcatcaggt 1799

                                                                        
Query: 1800 gataagaaacgtgctcaagttattctctctcatattccaagtgcaattgataaacatatt 1859
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1800 gataagaaacgtgctcaagttattctctctcatattccaagtgcaattgataaacatatt 1859

                                                                        
Query: 1860 gaattggcaaatgctctcttagagactattacagatccaggtcaacgtcatcaaattaaa 1919
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1860 gaattggcaaatgctctcttagagactattacagatccaggtcaacgtcatcaaattaaa 1919

                                                                        
Query: 1920 caatccattgaaagattacaaacacttaaaccaagaatcattgaaaatgcaaatagagca 1979
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1920 caatccattgaaagattacaaacacttaaaccaagaatcattgaaaatgcaaatagagca 1979

                                                                        
Query: 1980 atcgccaatccaaatgaccatgaagctcgtaaaaatctttcatcagatattaaagaagcc 2039
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1980 atcgccaatccaaatgaccatgaagctcgtaaaaatctttcatcagatattaaagaagcc 2039

                                                                        
Query: 2040 aaaaaagcaattggtcaaatcagtcaaccatatgaagtcgtttcagctctcaatactaaa 2099
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2040 aaaaaagcaattggtcaaatcagtcaaccatatgaagtcgtttcagctctcaatactaaa 2099

                                                                        
Query: 2100 attcataatgatcttgattcactcattaaatgtatcgatgaaggtggtccagatatgcaa 2159
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2100 attcataatgatcttgattcactcattaaatgtatcgatgaaggtggtccagatatgcaa 2159

                                                                        
Query: 2160 gttaaaggtgttcaatatgctaaagatatagcaaactctattaaaaaacaaattgaagca 2219
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2160 gttaaaggtgttcaatatgctaaagatatagcaaactctattaaaaaacaaattgaagca 2219

                                                                        
Query: 2220 gccgaggcatacgctcaaactatcactgatccagatcgtaagaaacaagtantagattca 2279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2220 gccgaggcatacgctcaaactatcactgatccagatcgtaagaaacaagtantagattca 2279

                                                                        
Query: 2280 gattgagcnggcttaaaagagacttactccncaacttttagaagcaattagagcatgttt 2339
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2280 gattgagcnggcttaaaagagacttactccncaacttttagaagcaattagagcatgttt 2339

                                                                        
Query: 2340 agcaaatcctgatnataaagaagctcgtaagagactcgatgatgtcgtcagaagagttaa 2399
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2340 agcaaatcctgatnataaagaagctcgtaagagactcgatgatgtcgtcagaagagttaa 2399

                                                               
Query: 2400 agaagcaagtagtaatcttagtcaagtcattcaaccaactgctgatgaact 2450
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2400 agaagcaagtagtaatcttagtcaagtcattcaaccaactgctgatgaact 2450


 Score = 1241 bits (626), Expect = 0.0
 Identities = 626/626 (100%)
 Strand = Plus / Plus

                                                                        
Query: 2516 ctcgtgccttattaaaagctgctgaattggcaagaattgaagcagaggaagaaaagaaac 2575
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2516 ctcgtgccttattaaaagctgctgaattggcaagaattgaagcagaggaagaaaagaaac 2575

                                                                        
Query: 2576 gtttggctataattgaagaagaaaagaaacgtttagctgcagaggaagaggaaagaaaac 2635
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2576 gtttggctataattgaagaagaaaagaaacgtttagctgcagaggaagaggaaagaaaac 2635

                                                                        
Query: 2636 gtgctccaaaactcgtcgttccagaaggtccagttaataaagcagttttcggtgctgccg 2695
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2636 gtgctccaaaactcgtcgttccagaaggtccagttaataaagcagttttcggtgctgccg 2695

                                                                        
Query: 2696 cgtgatgtcgctcaagctttagaatcaaaagttcgtgatggtacaccattgggtatactc 2755
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2696 cgtgatgtcgctcaagctttagaatcaaaagttcgtgatggtacaccattgggtatactc 2755

                                                                        
Query: 2756 gttcaattatcaggacgaaatcgctcaacaaatggctttaatcgcaagtttcgcaatgaa 2815
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2756 gttcaattatcaggacgaaatcgctcaacaaatggctttaatcgcaagtttcgcaatgaa 2815

                                                                        
Query: 2816 tggtgatgttaaaggtatgattactgctgctcgtaaaatcgcagataccatcaaacaagt 2875
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2816 tggtgatgttaaaggtatgattactgctgctcgtaaaatcgcagataccatcaaacaagt 2875

                                                                        
Query: 2876 tcaaactcaagctaagacatatcgctgacaatctgcactgatccacgtttaaaacaaaat 2935
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2876 tcaaactcaagctaagacatatcgctgacaatctgcactgatccacgtttaaaacaaaat 2935

                                                                        
Query: 2936 gttttaacctattgcgattgtggtggtaatttcagtacccaacttacaaatcctctgcgc 2995
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2936 gttttaacctattgcgattgtggtggtaatttcagtacccaacttacaaatcctctgcgc 2995

                                                                        
Query: 2996 cgttaaatcaaatgattttaatgatccaaccgctgaagaacaattagttacttgtgctaa 3055
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2996 cgttaaatcaaatgattttaatgatccaaccgctgaagaacaattagttacttgtgctaa 3055

                                                                        
Query: 3056 aggtttatcaggtgctgtaattaatacttgtaaaatcttctgaagctgacatcaattaac 3115
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3056 aggtttatcaggtgctgtaattaatacttgtaaaatcttctgaagctgacatcaattaac 3115

                                      
Query: 3116 caaagtaaaagtaccacaacaataaa 3141
            ||||||||||||||||||||||||||
Sbjct: 3116 caaagtaaaagtaccacaacaataaa 3141


 Score = 42.1 bits (21), Expect = 0.005
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 2545 gcaagaattgaagcagaggaa 2565
            |||||||||||||||||||||
Sbjct: 2485 gcaagaattgaagcagaggaa 2505


 Score = 36.2 bits (18), Expect = 0.32
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 163 tgttgaattaattcaaca 180
           ||||||||||||||||||
Sbjct: 180 tgttgaattaattcaaca 163


>Contig-U12697-1 (Contig-U12697-1Q) /CSM_Contig/Contig-U12697-1Q.Seq.d
          Length = 767

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 2558 cagaggaagaaaagaaacgttt 2579
            ||||||||||||||||||||||
Sbjct: 600  cagaggaagaaaagaaacgttt 621


 Score = 42.1 bits (21), Expect = 0.005
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 2593 gaagaaaagaaacgtttagct 2613
            |||||||||||||||||||||
Sbjct: 605  gaagaaaagaaacgtttagct 625


>Contig-U14180-1 (Contig-U14180-1Q) /CSM_Contig/Contig-U14180-1Q.Seq.d
          Length = 1581

 Score = 40.1 bits (20), Expect = 0.020
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1085 aatccaaatgatcaagaagc 1104
            ||||||||||||||||||||
Sbjct: 313  aatccaaatgatcaagaagc 332


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 45,506
Number of Sequences: 8402
Number of extensions: 45506
Number of successful extensions: 4883
Number of sequences better than 10.0: 148
length of query: 3141
length of database: 8,075,542
effective HSP length: 17
effective length of query: 3124
effective length of database: 7,932,708
effective search space: 24781779792
effective search space used: 24781779792
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 1.31
Homology vs DNA 
Query= Contig-U15533-1 (Contig-U15533-1Q) /CSM_Contig/Contig-U15533-1Q.Seq.d
         (3141 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ325952) Dictyostelium discoideum cDNA clone:dda3k04, 5' e...  1275   0.0    1
(BJ335299) Dictyostelium discoideum cDNA clone:dda49n18, 5' ...  1273   0.0    1
(BJ330769) Dictyostelium discoideum cDNA clone:dda32n15, 5' ...  1195   0.0    1
(BJ326808) Dictyostelium discoideum cDNA clone:dda18h04, 5' ...  1195   0.0    1
(BJ334197) Dictyostelium discoideum cDNA clone:dda45a14, 5' ...  1104   0.0    1
(BJ328056) Dictyostelium discoideum cDNA clone:dda22c23, 5' ...  1102   0.0    1
(BJ353767) Dictyostelium discoideum cDNA clone:dda51i10, 3' ...   876   0.0    4
(BJ346495) Dictyostelium discoideum cDNA clone:dda24j01, 3' ...   775   0.0    2
(BJ348682) Dictyostelium discoideum cDNA clone:dda34b04, 3' ...   383   0.0    7
(BJ409766) Dictyostelium discoideum cDNA clone:dds42n02, 3' ...   359   0.0    9
(BJ408825) Dictyostelium discoideum cDNA clone:dds47h01, 3' ...   359   0.0    9
(BJ356367) Dictyostelium discoideum cDNA clone:dda60h05, 3' ...   359   0.0    9
(BJ355000) Dictyostelium discoideum cDNA clone:dda55m09, 3' ...   359   0.0    8
(BJ354538) Dictyostelium discoideum cDNA clone:dda53n23, 3' ...   359   0.0    9
(BJ354306) Dictyostelium discoideum cDNA clone:dda53o02, 3' ...   359   0.0    9
(BJ353759) Dictyostelium discoideum cDNA clone:dda51h08, 3' ...   359   0.0    8
(BJ353674) Dictyostelium discoideum cDNA clone:dda51f03, 3' ...   359   0.0    9
(BJ352860) Dictyostelium discoideum cDNA clone:dda48m06, 3' ...   359   0.0    8
(BJ352051) Dictyostelium discoideum cDNA clone:dda45a14, 3' ...   359   0.0    9
(BJ351163) Dictyostelium discoideum cDNA clone:dda42c07, 3' ...   359   0.0    9
(BJ350940) Dictyostelium discoideum cDNA clone:dda41c13, 3' ...   359   0.0    7
(BJ350569) Dictyostelium discoideum cDNA clone:dda40f10, 3' ...   359   0.0    9
(BJ350381) Dictyostelium discoideum cDNA clone:dda39l17, 3' ...   359   0.0    9
(BJ350354) Dictyostelium discoideum cDNA clone:dda39f18, 3' ...   359   0.0    9
(BJ350248) Dictyostelium discoideum cDNA clone:dda39a11, 3' ...   359   0.0    10
(BJ349620) Dictyostelium discoideum cDNA clone:dda37h05, 3' ...   359   0.0    9
(BJ349570) Dictyostelium discoideum cDNA clone:dda36m21, 3' ...   359   0.0    9
(BJ349018) Dictyostelium discoideum cDNA clone:dda35i05, 3' ...   359   0.0    7
(BJ348921) Dictyostelium discoideum cDNA clone:dda34e20, 3' ...   359   0.0    6
(BJ348407) Dictyostelium discoideum cDNA clone:dda33k01, 3' ...   359   0.0    8
(BJ348186) Dictyostelium discoideum cDNA clone:dda32o07, 3' ...   359   0.0    8
(BJ406123) Dictyostelium discoideum cDNA clone:dds34a09, 3' ...   353   0.0    9
(BJ350660) Dictyostelium discoideum cDNA clone:dda40i18, 3' ...   353   0.0    9
(BJ349345) Dictyostelium discoideum cDNA clone:dda36o06, 3' ...   351   0.0    6
(BJ350898) Dictyostelium discoideum cDNA clone:dda41j07, 3' ...   359   0.0    8
(BJ344312) Dictyostelium discoideum cDNA clone:dda18h04, 3' ...   359   0.0    8
(BJ355767) Dictyostelium discoideum cDNA clone:dda58l03, 3' ...   359   0.0    8
(BJ356666) Dictyostelium discoideum cDNA clone:dda61f02, 3' ...   359   0.0    9
(BJ333979) Dictyostelium discoideum cDNA clone:dda44o15, 5' ...  1053   0.0    1
(BJ352979) Dictyostelium discoideum cDNA clone:dda48f14, 3' ...   359   0.0    9
(BJ348529) Dictyostelium discoideum cDNA clone:dda33d13, 3' ...   359   0.0    5
(BJ351716) Dictyostelium discoideum cDNA clone:dda44k08, 3' ...   301   0.0    8
(BJ332563) Dictyostelium discoideum cDNA clone:dda39f18, 5' ...  1009   0.0    1
(BJ331542) Dictyostelium discoideum cDNA clone:dda35f22, 5' ...  1007   0.0    1
(BJ354399) Dictyostelium discoideum cDNA clone:dda53b13, 3' ...   359   0.0    7
(BJ351815) Dictyostelium discoideum cDNA clone:dda44n18, 3' ...   299   0.0    8
(BJ356653) Dictyostelium discoideum cDNA clone:dda61c02, 3' ...   281   0.0    8
(BJ352987) Dictyostelium discoideum cDNA clone:dda48h16, 3' ...   359   0.0    7
(BJ352129) Dictyostelium discoideum cDNA clone:dda45a21, 3' ...   353   0.0    5
(BJ365258) Dictyostelium discoideum cDNA clone:ddc34o14, 5' ...   938   0.0    1
(BJ357238) Dictyostelium discoideum cDNA clone:dda62k19, 3' ...   264   0.0    8
(BJ357056) Dictyostelium discoideum cDNA clone:dda62g08, 3' ...   242   0.0    8
(BJ351229) Dictyostelium discoideum cDNA clone:dda42a17, 3' ...   359   0.0    6
(BJ356765) Dictyostelium discoideum cDNA clone:dda61i12, 3' ...   327   0.0    6
(BJ355442) Dictyostelium discoideum cDNA clone:dda57h05, 3' ...   474   0.0    5
(BJ348157) Dictyostelium discoideum cDNA clone:dda32i10, 3' ...   351   0.0    5
(BJ350105) Dictyostelium discoideum cDNA clone:dda38p14, 3' ...   359   0.0    4
(BJ349541) Dictyostelium discoideum cDNA clone:dda36g20, 3' ...   359   0.0    4
(BJ352147) Dictyostelium discoideum cDNA clone:dda45e23, 3' ...   359   0.0    4
(BJ358259) Dictyostelium discoideum cDNA clone:dda56e24, 3' ...   359   0.0    4
(BJ408227) Dictyostelium discoideum cDNA clone:dds45j06, 3' ...   204   0.0    7
(BJ357600) Dictyostelium discoideum cDNA clone:dda64f04, 3' ...   353   e-176  3
(BJ340643) Dictyostelium discoideum cDNA clone:dda3k04, 3' e...   234   e-152  4
(BJ350557) Dictyostelium discoideum cDNA clone:dda40c09, 3' ...   186   4e-81  3
(BJ329190) Dictyostelium discoideum cDNA clone:dda24j01, 5' ...   313   2e-80  1
(BJ349228) Dictyostelium discoideum cDNA clone:dda35f22, 3' ...   151   1e-74  3
(BJ338510) Dictyostelium discoideum cDNA clone:dda61f20, 5' ...   280   3e-70  1
(BJ351872) Dictyostelium discoideum cDNA clone:dda44k19, 3' ...   202   6e-47  1
(AC213153) Populus trichocarpa clone POP047-O16, complete se...    58   0.002  1
(AV408295) Lotus japonicus cDNA clone:MWL038g09_r, 5' end.         36   0.028  2
(AG279695) Mus musculus molossinus DNA, clone:MSMg01-050L04....    38   0.098  2
(AZ540454) ENTDF66TF Entamoeba histolytica Sheared DNA Entam...    40   0.10   2
(AZ529180) ENTCE59TR Entamoeba histolytica Sheared DNA Entam...    40   0.10   2
(AZ669217) ENTFV38TR Entamoeba histolytica Sheared DNA Entam...    40   0.10   2
(ER734046) SB_BBc160-C18.F SB_BBc Sorghum bicolor genomic 5'...    38   0.38   2
(AC159432) Trypanosoma brucei chromosome 5 clone RPCI93-28F8...    50   0.51   1
(AL459772) T. brucei sheared genomic DNA clone 76h12, revers...    50   0.51   1
(AW602525) RC5-BT0562-200100-031-D05 BT0562 Homo sapiens cDN...    36   1.5    2
(AW602513) RC5-BT0562-180100-031-D05 BT0562 Homo sapiens cDN...    36   1.5    2
(AW602527) RC5-BT0562-200100-031-E06 BT0562 Homo sapiens cDN...    36   1.5    2
(AW602516) RC5-BT0562-180100-031-E06 BT0562 Homo sapiens cDN...    36   1.5    2
(AW602511) RC5-BT0562-140100-031-C06 BT0562 Homo sapiens cDN...    36   1.5    2
(CJ382950) Molgula tectiformis cDNA, gastrula/neurula clone:...    42   1.8    3
(ER552698) 1093016261231 Global-Ocean-Sampling_GS-35-01-01-1...    36   1.8    3
(CJ405453) Molgula tectiformis cDNA, gonad clone:mtgd023f19,...    42   1.8    3
(CJ356183) Molgula tectiformis cDNA, cleaving embryo clone:m...    42   1.9    3
(CJ427562) Molgula tectiformis cDNA, larva clone:mtlv030c15,...    42   1.9    3
(CJ400930) Molgula tectiformis cDNA, gonad clone:mtgd013j14,...    42   2.0    3
(CJ418323) Molgula tectiformis cDNA, larva clone:mtlv030c15,...    42   2.0    3
(X54059) Borrelia burgdorferi groEL gene for a common antigen.     40   2.0    4
(AC140463) Mus musculus BAC clone RP24-348D8 from chromosome...    48   2.0    1
(AP010380) Lotus japonicus genomic DNA, chromosome 2, clone:...    48   2.0    1
(AL391001) Human DNA sequence from clone RP11-477H21 on chro...    48   2.0    1
(AL139097) Human DNA sequence from clone RP1-125E8 on chromo...    48   2.0    1
(AL161438) Human DNA sequence *** SEQUENCING CANCELLED *** f...    48   2.0    1
(AC024315) Homo sapiens clone RP11-26N3, WORKING DRAFT SEQUE...    48   2.0    1
(DY364470) ZO__Ee0002N16.f ZO__Ee Zingiber officinale cDNA c...    48   2.0    1
(H63840) yu47a10.s1 Soares fetal liver spleen 1NFLS Homo sap...    48   2.0    1
(CJ365192) Molgula tectiformis cDNA, cleaving embryo clone:m...    42   2.4    3
(AC092555) Papio anubis clone RP41-97B18, WORKING DRAFT SEQU...    38   2.8    6
(AM025187) Bos indicus 3' EST, clone C0005915a01.                  34   3.3    3
(AM024417) Bos indicus 5' EST, clone C0005915c03.                  34   3.3    3
(AJ838071) Arabidopsis thaliana T-DNA flanking sequence, lef...    36   3.6    2
(AC216447) Populus trichocarpa clone ACSB1045-A16, complete ...    38   3.8    4
(AC007956) Homo sapiens chromosome 14 clones CTD-3211F8 and ...    36   3.8    2
(FB671655) Sequence 115 from Patent EP1892306.                     36   3.8    2
(DJ056628) METHODS AND KITS FOR INVESTIGATING CANCER.              36   3.8    2
(CS080912) Sequence 115 from Patent WO2005040414.                  36   3.8    2
(CS063131) Sequence 115 from Patent EP1522594.                     36   3.8    2
(CW187533) 104_605_11167143_116_36717_050 Sorghum methylatio...    38   4.3    2
(EK093475) 1092962019148 Global-Ocean-Sampling_GS-31-01-01-1...    36   4.4    2
(CW235717) 104_691_11215156_116_37493_012 Sorghum methylatio...    38   4.6    2
(AL832365) Homo sapiens mRNA; cDNA DKFZp451P176 (from clone ...    36   4.7    2
(AK090435) Homo sapiens mRNA for FLJ00353 protein.                 36   4.7    2
(DD388316) COMPOSITIONS AND METHODS FOR THE DIAGNOSIS AND TR...    36   4.7    2
(FC168583) 1106908731576 BABEVPN-C-01-1-7KB Papio anubis cDN...    36   4.8    4
(CR761606) Xenopus tropicalis finished cDNA, clone TGas033n20.     36   4.9    2
(DD366887) Genes which regulate angiogenesis.                      36   4.9    2
(AX925944) Sequence 23 from Patent WO03083117.                     36   4.9    2
(AK297582) Homo sapiens cDNA FLJ58590 complete cds, highly s...    36   4.9    2
(DJ081102) RNA METABOLISM PROTEINS.                                36   4.9    2
(AX060175) Sequence 21 from Patent WO0078952.                      36   4.9    2
(BC169144) Xenopus tropicalis heat shock protein 90kDa alpha...    36   4.9    2
(DD366886) Genes which regulate angiogenesis.                      36   5.0    2
(AX925942) Sequence 21 from Patent WO03083117.                     36   5.0    2
(BC007792) Homo sapiens YLP motif containing 1, mRNA (cDNA c...    36   5.0    2
(AG288523) Mus musculus molossinus DNA, clone:MSMg01-062J07....    34   5.1    2
(AR204104) Sequence 2 from patent US 6365722.                      36   5.1    2
(BC023570) Homo sapiens YLP motif containing 1, mRNA (cDNA c...    36   5.1    2
(BE795132) 601592665F1 NIH_MGC_7 Homo sapiens cDNA clone IMA...    36   5.2    2
(AZ533183) ENTDH47TF Entamoeba histolytica Sheared DNA Entam...    32   5.2    2
(BG164559) 602342110F1 NIH_MGC_89 Homo sapiens cDNA clone IM...    36   5.2    2
(BG289918) 602381333F1 NIH_MGC_93 Homo sapiens cDNA clone IM...    36   5.2    2
(FC177096) 1106909232127 BABEVPN-C-01-1-7KB Papio anubis cDN...    36   5.2    2
(FC124607) 1106878623148 BABEVPN-C-01-1-7KB Papio anubis cDN...    36   5.2    2
(GE889037) 1112934393741 BABEVCEREB-C-01-1-7KB Papio anubis ...    36   5.2    2
(CX957176) JGI_CAAO9097.fwd NIH_XGC_tropTe5 Xenopus (Siluran...    36   5.2    2
(FC133660) 1106908479543 BABEVPN-C-01-1-7KB Papio anubis cDN...    36   5.2    2
(GE866426) 1112870061374 BABEVCEREB-C-01-1-7KB Papio anubis ...    36   5.2    2
(BC160441) Xenopus tropicalis cDNA clone IMAGE:7558608, part...    36   5.2    2
(BQ424807) AGENCOURT_7902752 NIH_MGC_72 Homo sapiens cDNA cl...    36   5.2    2
(GE880390) 1112934245354 BABEVCEREB-C-01-1-7KB Papio anubis ...    36   5.2    2
(EJ037387) 1095454077955 Global-Ocean-Sampling_GS-26-01-01-1...    36   5.2    2
(CX915756) JGI_CAAN5245.fwd NIH_XGC_tropTe4 Xenopus (Siluran...    36   5.2    2
(GE847054) 1112777318000 BABEVCEREB-C-01-1-7KB Papio anubis ...    36   5.2    2
(EL837141) CBWN17603.g1 NICHD_XGC_tropTe1 Xenopus (Silurana)...    36   5.2    2
(BG431377) 602500003F1 NIH_MGC_75 Homo sapiens cDNA clone IM...    36   5.2    2
(AL043233) Homo sapiens mRNA; EST DKFZp434J1423_r1  (from cl...    36   5.2    2
(EL830156) CBWN11891.b1 NICHD_XGC_tropTe1 Xenopus (Silurana)...    36   5.2    2
(CN089523) EC2BBA31DB07.b1 Xenopus tropicalis xtbs plasmid l...    36   5.2    2
(BG675850) 602621889F1 NCI_CGAP_Skn4 Homo sapiens cDNA clone...    36   5.2    2
(EL830157) CBWN11891.g1 NICHD_XGC_tropTe1 Xenopus (Silurana)...    36   5.2    2
(AM634203) Entamoeba dispar GSS, clone dispar116f12.p1k.           32   5.2    2
(CX963294) JGI_CAAO12401.rev NIH_XGC_tropTe5 Xenopus (Silura...    36   5.2    2
(FC159774) 1106908668473 BABEVPN-C-01-1-7KB Papio anubis cDN...    36   5.2    2
(EL830725) CBWN12286.b1 NICHD_XGC_tropTe1 Xenopus (Silurana)...    36   5.2    2
(CX938736) JGI_CAAO6191.fwd NIH_XGC_tropTe5 Xenopus (Siluran...    36   5.2    2
(CX962589) JGI_CAAO12019.rev NIH_XGC_tropTe5 Xenopus (Silura...    36   5.2    2
(BE743026) 601574654F1 NIH_MGC_9 Homo sapiens cDNA clone IMA...    36   5.2    2
(EL829544) CBWN11411.g1 NICHD_XGC_tropTe1 Xenopus (Silurana)...    36   5.2    2
(BE746216) 601578685F1 NIH_MGC_9 Homo sapiens cDNA clone IMA...    36   5.2    2
(CN086226) EC2BBA26DE07.b1 Xenopus tropicalis xtbs plasmid l...    36   5.3    2
(BI829562) 603080394F1 NIH_MGC_119 Homo sapiens cDNA clone I...    36   5.3    2
(BF573676) 602077265F2 NIH_MGC_62 Homo sapiens cDNA clone IM...    36   5.3    2
(CN075453) EC2BBA10BA11.b1 Xenopus tropicalis xtbs plasmid l...    36   5.3    2
(FC125106) 1106878626796 BABEVPN-C-01-1-7KB Papio anubis cDN...    36   5.3    2
(GE847319) 1112777433392 BABEVCEREB-C-01-1-7KB Papio anubis ...    36   5.3    2
(BU430228) UI-HF-BN0-aev-h-06-0-UI.r1 NIH_MGC_50 Homo sapien...    36   5.3    2
(CB153087) K-EST0210419 B1T694954 Homo sapiens cDNA clone B1...    36   5.3    2
(CB116754) K-EST0161636 L10ChoCK0 Homo sapiens cDNA clone L1...    36   5.3    2
(EK093398) 1092962018956 Global-Ocean-Sampling_GS-31-01-01-1...    36   5.3    2
(CR746625) RZPD Homo sapiens cDNA clone IMAGp998D0913504 = I...    36   5.3    2
(CN072659) EC0CBA002AG04.b1 Xenopus tropicalis xtbs plasmid ...    36   5.4    2
(AW377966) MR0-HT0208-211299-104-a02 HT0208 Homo sapiens cDN...    36   5.4    2
(BF349715) MR0-HT0208-131299-102-c07 HT0208 Homo sapiens cDN...    36   5.4    2
(BD436801) Human Genes and Gene Expression Products.               36   5.4    2
(AX247334) Sequence 2264 from Patent WO0166753.                    36   5.4    2
(BD214267) Novel human genes and gene expression products ii.      36   5.5    2
(AR767861) Sequence 2409 from patent US 6964868.                   36   5.5    2
(R58811) G5168 Fetal heart Homo sapiens cDNA clone G5168 5' ...    36   5.5    2
(EJ995583) 1093023084919 Global-Ocean-Sampling_GS-30-02-01-1...    36   5.5    2
(EJ979251) 1093022141953 Global-Ocean-Sampling_GS-30-02-01-1...    36   5.5    2
(BH155038) ENTTH92TF Entamoeba histolytica Sheared DNA Entam...    42   5.6    2
(AY288521) Methanococcus voltae aspartate aminotransferase-l...    38   6.3    3
(EJ491978) 1095403546360 Global-Ocean-Sampling_GS-28-01-01-1...    40   6.6    2
(BX182183) Danio rerio genomic clone DKEY-194O11, genomic su...    36   6.7    3
(CF349550) fc3306.e Rose Petals (Fragrant Cloud) Lambda Zap ...    32   7.4    4
(CP000497) Pichia stipitis CBS 6054 chromosome 3, complete s...    46   8.0    1
(DL005616) NUCLEIC ACID PROBES AND NUCLEIC ACID ANALOG PROBES.     46   8.0    1
(CS459541) Sequence 22 from Patent WO2006117596.                   46   8.0    1
(EU606031) Sarcoptes scabiei paramyosin mRNA, complete cds.        46   8.0    1
(EU116341) Sarcoptes scabiei paramyosin mRNA, complete cds.        46   8.0    1
(DQ131648) Sarcoptes scabiei paramyosin mRNA, partial cds.         46   8.0    1
(AF462195) Sarcoptes scabiei type hominis paramyosin mRNA, p...    46   8.0    1
(AF317670) Sarcoptes scabiei paramyosin mRNA, complete cds.        46   8.0    1
(AP000357) Homo sapiens genomic DNA, chromosome 22q11.2, clo...    46   8.0    1
(AP000356) Homo sapiens genomic DNA, chromosome 22q11.2, clo...    46   8.0    1
(AP000344) Homo sapiens genomic DNA, chromosome 22q11.2, clo...    46   8.0    1
(AP000343) Homo sapiens genomic DNA, chromosome 22q11.2, clo...    46   8.0    1
(AC026441) Homo sapiens chromosome 5 clone CTD-2280O3, compl...    46   8.0    1
(AC022449) Homo sapiens chromosome 5 clone RP11-93O7, comple...    46   8.0    1
(AC021076) Homo sapiens chromosome 5 clone CTB-166J1, comple...    46   8.0    1
(AC016648) Homo sapiens chromosome 5 clone RPCI-1_137K24, co...    46   8.0    1
(AC111529) Rattus norvegicus clone CH230-151B24, *** SEQUENC...    46   8.0    1
(CU463287) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   8.0    1
(AC232908) Lama pacos clone CH246-523G21, WORKING DRAFT SEQU...    46   8.0    1
(AC012550) Homo sapiens clone RP11-12M7, WORKING DRAFT SEQUE...    46   8.0    1
(AC010407) Homo sapiens chromosome 5 clone CTD-2156B6, WORKI...    46   8.0    1
(FI196245) CccaBa012-B14TV CccABa Cajanus cajan genomic clon...    46   8.0    1
(EK060105) 1092960070763 Global-Ocean-Sampling_GS-31-01-01-1...    46   8.0    1
(DR144610) 49136757 Drosophila pseudoobscura embryonic cDNA ...    46   8.0    1
(FE854255) CAFT1016.fwd CAFT Pichia stipitis oxygen limited ...    46   8.0    1

>(BJ325952) Dictyostelium discoideum cDNA clone:dda3k04, 5' end,
            single read.
          Length = 655

 Score = 1275 bits (643), Expect = 0.0
 Identities = 652/655 (99%)
 Strand = Plus / Plus


Query: 508  tatgattggtgacgtaaatcaattacaaaatgaattggttaaaagatcacaacgtcgttc 567
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    tatgattggtgacgtaaatcaattacaaaatgaattggttaaaagatcacaacgtcgttc 60


Query: 568  agagggtagccacaatccagagctacgttcaaaacttgaagatatcgccacaatggtaaa 627
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   agggggtagccacaatccagagctacgttcaaaacttgaagatatcgccacaatggtaaa 120


Query: 628  catactctctgaacaacatcaagcaagtgctcgtgatgtttgtagaaatccaagagagga 687
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  catactctctgaacaacatcaagcaagtgctcgtgatgtttgtagaaatccaagagagga 180


Query: 688  aaccctaagatcaaaacgttcagaactttcaagtaaattattatcagcaatcgatgattt 747
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  aaccctaagatcaaaacgttcagaactttcaagtaaattattatcagcaatcgatgattt 240


Query: 748  aatctacactattaaattgattttcgagaataatacaaaattcgttgatctcgctttcaa 807
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 241  aatctacactattaaattgattttcgagaataatacagaattcgttgatctcgctttcaa 300


Query: 808  atggaaaccagttcgtacaatggctgaagatgaagttactcgtgcctccgctgttcttat 867
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 301  atggaaaccagttcgtacaatggctaaagatgaagttactcgtgcctccgctgttcttat 360


Query: 868  tgataatcttcgtacacttccaaaatcaattgaggctggtaatggtccagcagcagctag 927
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  tgataatcttcgtacacttccaaaatcaattgaggctggtaatggtccagcagcagctag 420


Query: 928  agagattgtcaatgctgcaaacttacaaatttcaaatgcaatcatcgttgcaaatcgttg 987
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  agagattgtcaatgctgcaaacttacaaatttcaaatgcaatcatcgttgcaaatcgttg 480


Query: 988  tcaagatccagttaaaaagaaaatgttattgaaacaaattgaagaattaaagaaattgac 1047
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  tcaagatccagttaaaaagaaaatgttattgaaacaaattgaagaattaaagaaattgac 540


Query: 1048 accaatgcttatctctgctatgaaaccagttttggagaatccaaatgatcaagaagctca 1107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  accaatgcttatctctgctatgaaaccagttttggagaatccaaatgatcaagaagctca 600


Query: 1108 aaaacatttagaatctgtaatttattcaacccaaaaagcatctgaagcattggca 1162
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  aaaacatttagaatctgtaatttattcaacccaaaaagcatctgaagcattggca 655

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 3,544,948,458
Number of extensions: 207292292
Number of successful extensions: 16198748
Number of sequences better than 10.0: 212
Length of query: 3141
Length of database: 98,766,808,389
Length adjustment: 25
Effective length of query: 3116
Effective length of database: 96,311,147,814
Effective search space: 300105536588424
Effective search space used: 300105536588424
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
protein update 2009. 7.16
Homology vs Protein 
Query= Contig-U15533-1 (Contig-U15533-1Q) /CSM_Contig/Contig-U15533-1Q.Seq.d
         (3141 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54MH2) RecName: Full=Probable vinculin;                             649   0.0
(O46037) RecName: Full=Vinculin;  &AE014298_374(AE014298|pid:non...    59   1e-06
(P19826) RecName: Full=Vinculin; AltName: Full=P107B;  &J04804_1...    57   6e-06
(Q17162) RecName: Full=Vinculin;  &U07023_1(U07023|pid:none)           50   7e-04
(Q9UZC8) RecName: Full=DNA double-strand break repair rad50 ATPa...    43   0.063
FN357710_12(FN357710|pid:none) Schistosoma mansoni genome sequen...    42   0.18
AP006627_3523(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, c...    42   0.18
AY051780_1(AY051780|pid:none) Drosophila melanogaster LD30423 fu...    40   0.70
A40694(A40694)cadherin-associated protein D alpha-catenin - frui...    40   0.70
AY480051_1(AY480051|pid:none) Homo sapiens plectin 11 mRNA, comp...    39   0.91
AY480045_1(AY480045|pid:none) Homo sapiens plectin 2 mRNA, compl...    39   0.91
AY480044_1(AY480044|pid:none) Homo sapiens plectin 1 mRNA, compl...    39   0.91
AY480046_1(AY480046|pid:none) Homo sapiens plectin 3 mRNA, compl...    39   0.91
AY480048_1(AY480048|pid:none) Homo sapiens plectin 7 mRNA, compl...    39   0.91
(Q6S381) RecName: Full=Plectin-1;          Short=PLTN;          ...    39   0.91
AY480049_1(AY480049|pid:none) Homo sapiens plectin 8 mRNA, compl...    39   0.91
(Q9JI55) RecName: Full=Plectin-1;          Short=PLTN;          ...    39   1.2
(P39921) Tropomyosin-1 (Tropomyosin I).  &X70840_1(X70840|pid:no...    39   1.2
CS673508_1(CS673508|pid:none) Sequence 83 from Patent WO20070601...    39   1.2
BA000028_2987(BA000028|pid:none) Oceanobacillus iheyensis HTE831...    39   1.2
A69136(A69136) ATP-dependent Clp proteinase (EC 3.4.21.-) regula...    39   1.6
(Q54VC4) RecName: Full=Activating signal cointegrator 1 complex ...    38   2.0
U91585_1(U91585|pid:none) Girardia tigrina myosin heavy chain (G...    38   2.6
U29380_16(U29380|pid:none) Caenorhabditis elegans cosmid ZK546, ...    37   3.5
AY480039_1(AY480039|pid:none) Mus musculus plectin 7 mRNA, compl...    37   3.5
T27907(T27907)hypothetical protein ZK546.1 - Caenorhabditis eleg...    37   3.5
AY480038_1(AY480038|pid:none) Mus musculus plectin 6 mRNA, compl...    37   3.5
AY480043_1(AY480043|pid:none) Mus musculus plectin 11 mRNA, comp...    37   3.5
AY480033_1(AY480033|pid:none) Mus musculus plectin 1 mRNA, compl...    37   3.5
AY487140_1(AY487140|pid:none) Caenorhabditis elegans centrosome ...    37   3.5
CP000487_1128(CP000487|pid:none) Campylobacter fetus subsp. fetu...    37   4.5
CP000876_145(CP000876|pid:none) Herpetosiphon aurantiacus ATCC 2...    37   4.5
CP001047_264(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ...    37   4.5
(O46409) RecName: Full=Apolipoprotein A-IV;          Short=Apo-A...    37   5.9
AL691401_1(AL691401|pid:none) S.pombe chromosome I cosmid pB15E9.      37   5.9
CP000679_1088(CP000679|pid:none) Caldicellulosiruptor saccharoly...    36   7.7
L03534_1(L03534|pid:none) Entamoeba histolytica myosin heavy cha...    36   7.7
FM992688_676(FM992688|pid:none) Candida dubliniensis CD36 chromo...    36   7.7
CP000048_608(CP000048|pid:none) Borrelia hermsii DAH, complete g...    36   7.7

>(Q54MH2) RecName: Full=Probable vinculin;
          Length = 842

 Score =  649 bits (1674), Expect(3) = 0.0
 Identities = 345/369 (93%), Positives = 345/369 (93%)
 Frame = +2

Query: 59   MDEVLEMIADAVSSLVVAITDSEEKNTLFGDMVPGVELIQQAVNGMAEAAEETVSLIDEE 238
            MDEVLEMIADAVSSLVVAITDSEEKNTLFGDMVPGVELIQQAVNGMAEAAEETVSLIDEE
Sbjct: 1    MDEVLEMIADAVSSLVVAITDSEEKNTLFGDMVPGVELIQQAVNGMAEAAEETVSLIDEE 60

Query: 239  FIGQLESTSKQLKNSAGQLYVHAVRAREDPWNRVPQKDAIKAAKQILQNXXXXXXIEEQS 418
            FIGQLESTSKQLKNSAGQLYVHAVRAREDPWNRVPQKDAIKAAKQILQN      IEEQS
Sbjct: 61   FIGQLESTSKQLKNSAGQLYVHAVRAREDPWNRVPQKDAIKAAKQILQNVVLLVLIEEQS 120

Query: 419  NIKVLVNIAKKAAEGVRRIDEIENIKQLDVMIGDVNQLQNELVKRSQRRSEGSHNPELRS 598
            NIKVLVNIAKKAAEGVRRIDEIENIKQLDVMIGDVNQLQNELVKRSQRRSEGSHNPELRS
Sbjct: 121  NIKVLVNIAKKAAEGVRRIDEIENIKQLDVMIGDVNQLQNELVKRSQRRSEGSHNPELRS 180

Query: 599  KLEDIATMVNILSEQHQASARDVCRNPXXXXXXXXXXXXXXXXXXAIDDLIYTIKLIFEN 778
            KLEDIATMVNILSEQHQASARDVCRNP                  AIDDLIYTIKLIFEN
Sbjct: 181  KLEDIATMVNILSEQHQASARDVCRNPREETLRSKRSELSSKLLSAIDDLIYTIKLIFEN 240

Query: 779  NTKFVDLAFKWKPVRTMAEDEVTRASAVLIDNLRTLPKSIEAGNGPAAAREIVNAANLQI 958
            NTKFVDLAFKWKPVRTMAEDEVTRASAVLIDNLRTLPKSIEAGNGPAAAREIVNAANLQI
Sbjct: 241  NTKFVDLAFKWKPVRTMAEDEVTRASAVLIDNLRTLPKSIEAGNGPAAAREIVNAANLQI 300

Query: 959  SNAIIVANRCQDPVKKKMLLKQIEELKKLTPMLISAMKPVLENPNDQEAQKHLESVIYST 1138
            SNAIIVANRCQDPVKKKMLLKQIEELKKLTPMLISAMKPVLENPNDQEAQKHLESVIYST
Sbjct: 301  SNAIIVANRCQDPVKKKMLLKQIEELKKLTPMLISAMKPVLENPNDQEAQKHLESVIYST 360

Query: 1139 QKASEALAT 1165
            QKASEALAT
Sbjct: 361  QKASEALAT 369

 Score =  303 bits (775), Expect(3) = 0.0
 Identities = 157/169 (92%), Positives = 162/169 (95%), Gaps = 1/169 (0%)
 Frame = +1

Query: 1264 DLDSLEEAIASGDKKRAQVILSHIPSAIDKHIELANALLETITDPGQRHQIKQSIERLQT 1443
            DLDSLEEAIASGDKKRAQVILSHIPSAIDKHIELANALLETITDPGQRHQIKQSIERLQT
Sbjct: 389  DLDSLEEAIASGDKKRAQVILSHIPSAIDKHIELANALLETITDPGQRHQIKQSIERLQT 448

Query: 1444 LKPRIIENANRAIANPNDHEARKNLSSDIKEAKKAIGQISQPYEVVSALNTKIHNDLDSL 1623
            LKPRIIENANRAIANPNDHEARKNLSSDIKEAKKAIGQISQPYEVVSALNTKIHNDLDSL
Sbjct: 449  LKPRIIENANRAIANPNDHEARKNLSSDIKEAKKAIGQISQPYEVVSALNTKIHNDLDSL 508

Query: 1624 IKCIDEGGPDSKLR-CSIC*DIANSIKKQIEAAEAYAQTITDPDRKKEI 1767
            IKCIDEGGPD +++      DIANSIKKQIEAAEAYAQTITDPDRKK++
Sbjct: 509  IKCIDEGGPDMQVKGVQYAKDIANSIKKQIEAAEAYAQTITDPDRKKQV 557

 Score = 52.8 bits (125), Expect(3) = 0.0
 Identities = 28/28 (100%), Positives = 28/28 (100%)
 Frame = +3

Query: 1167 AVVSSPAEIVAASGVSLARDLDSLEEAI 1250
            AVVSSPAEIVAASGVSLARDLDSLEEAI
Sbjct: 370  AVVSSPAEIVAASGVSLARDLDSLEEAI 397

 Score =  335 bits (858), Expect = 8e-90
 Identities = 172/173 (99%), Positives = 172/173 (99%)
 Frame = +3

Query: 1761 RDLDSLEEAIASGDKKRAQVILSHIPSAIDKHIELANALLETITDPGQRHQIKQSIERLQ 1940
            RDLDSLEEAIASGDKKRAQVILSHIPSAIDKHIELANALLETITDPGQRHQIKQSIERLQ
Sbjct: 388  RDLDSLEEAIASGDKKRAQVILSHIPSAIDKHIELANALLETITDPGQRHQIKQSIERLQ 447

Query: 1941 TLKPRIIENANRAIANPNDHEARKNLSSDIKEAKKAIGQISQPYEVVSALNTKIHNDLDS 2120
            TLKPRIIENANRAIANPNDHEARKNLSSDIKEAKKAIGQISQPYEVVSALNTKIHNDLDS
Sbjct: 448  TLKPRIIENANRAIANPNDHEARKNLSSDIKEAKKAIGQISQPYEVVSALNTKIHNDLDS 507

Query: 2121 LIKCIDEGGPDMQVKGVQYAKDIANSIKKQIEAAEAYAQTITDPDRKKQVXDS 2279
            LIKCIDEGGPDMQVKGVQYAKDIANSIKKQIEAAEAYAQTITDPDRKKQV DS
Sbjct: 508  LIKCIDEGGPDMQVKGVQYAKDIANSIKKQIEAAEAYAQTITDPDRKKQVLDS 560

 Score =  131 bits (330), Expect(2) = 1e-34
 Identities = 80/123 (65%), Positives = 86/123 (69%)
 Frame = +3

Query: 2769 DEIAQQMALIASFAMNGDVKGMITAARKIADTIKQVQTQAKTYR*QSALIHV*NKMF*PX 2948
            DEIAQQMALIASFAMNGDVKGMITAARKIADTIKQVQTQAK          +   +
Sbjct: 722  DEIAQQMALIASFAMNGDVKGMITAARKIADTIKQVQTQAKHIADNCTDPRLKQNVL-TY 780

Query: 2949 XXXXXXXXPNLQILCAVKSNDFNDPTAEEQLVTCAKGLSGAVINTCKIF*S*HQLTKVKV 3128
                      L+ILCAVKSNDFNDPTAEEQLVTCAKGLSGAVIN  K   +   + + KV
Sbjct: 781  CDCGGNFSTQLKILCAVKSNDFNDPTAEEQLVTCAKGLSGAVINLVKSSEA-ASIKQRKV 839

Query: 3129 PQQ 3137
            PQQ
Sbjct: 840  PQQ 842

 Score = 41.6 bits (96), Expect(2) = 1e-34
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +1

Query: 2641 PKLVVPEGPVNKAVFGAAA 2697
            PKLVVPEGPVNKAVFGAAA
Sbjct: 680  PKLVVPEGPVNKAVFGAAA 698

 Score =  121 bits (303), Expect = 2e-25
 Identities = 116/399 (29%), Positives = 174/399 (43%), Gaps = 5/399 (1%)
 Frame = +1

Query: 1264 DLDSLEEAIASGDKKRAQVILSHIPSAIDKHIELANALLETITDPGQRHQIKQSIERLQT 1443
            +L +L ++I +G+   A      I +A +  I  A  +     DP ++  + + IE L+
Sbjct: 272  NLRTLPKSIEAGNGPAAA---REIVNAANLQISNAIIVANRCQDPVKKKMLLKQIEELKK 328

Query: 1444 LKPRIIENANRAIANPNDHEARKNLSSDIKEAKK-----AIGQISQPYEVVSALNTKIHN 1608
            L P +I      + NPND EA+K+L S I   +K     A   +S P E+V+A    +
Sbjct: 329  LTPMLISAMKPVLENPNDQEAQKHLESVIYSTQKASEALATAVVSSPAEIVAASGVSLAR 388

Query: 1609 DLDSLIKCIDEGGPDSKLRCSIC*DIANSIKKQIEAAEAYAQTITDPDRKKEI*IL*RKQ 1788
            DLDSL + I  G  D K    I   I ++I K IE A A  +TITDP            Q
Sbjct: 389  DLDSLEEAIASG--DKKRAQVILSHIPSAIDKHIELANALLETITDPG-----------Q 435

Query: 1789 LHQVIRNVLKLFSLIFQVQLINILNWQMLS*RLLQIQVNVIKLNNPLKDYKHLNQESLKM 1968
             HQ+ +++ +L               Q L  R+++     I   N  +  K+L+ +  +
Sbjct: 436  RHQIKQSIERL---------------QTLKPRIIENANRAIANPNDHEARKNLSSDIKEA 480

Query: 1969 QIEQSPIQMTMKLVKIFHQILKKPKKQLVKSVNHMKSFQLSILKFIMILIHSLNVSMKVV 2148
            +     I    ++V   +  +      L+K ++                    ++ +K V
Sbjct: 481  KKAIGQISQPYEVVSALNTKIHNDLDSLIKCIDE----------------GGPDMQVKGV 524

Query: 2149 QICKLKVFNMLKI*QTLLKNKLKQPRHTLKLSLIQIVRNKX*IQIEXA*KRLTPQLLEAI 2328
            Q  K  + N +K        K  +       ++    R K  +      K+LTPQLLEAI
Sbjct: 525  QYAK-DIANSIK--------KQIEAAEAYAQTITDPDRKKQVLDSIEQLKKLTPQLLEAI 575

Query: 2329 RACLANPDXKEAXXXXXXXXXXXXEASSNLSQVIQPTAD 2445
            RACLANPD KEA            EASSNLSQVIQPTAD
Sbjct: 576  RACLANPDDKEARKRLDDVVRRVKEASSNLSQVIQPTAD 614

 Score = 78.6 bits (192), Expect = 1e-12
 Identities = 53/107 (49%), Positives = 56/107 (52%), Gaps = 13/107 (12%)
 Frame = +2

Query: 2699 DVAQALESKVRDGTPLGILVQLS-------------GRNRSTNGFNRKFRNEW*C*RYDY 2839
            DVAQALESKVRDGTPLGILVQLS               N    G     R
Sbjct: 699  DVAQALESKVRDGTPLGILVQLSDEIAQQMALIASFAMNGDVKGMITAARK--------- 749

Query: 2840 CCS*NRRYHQTSSNSS*DISLTICTDPRLKQNVLTYCDCGGNFSTQL 2980
              +   +  QT +    D     CTDPRLKQNVLTYCDCGGNFSTQL
Sbjct: 750  -IADTIKQVQTQAKHIAD----NCTDPRLKQNVLTYCDCGGNFSTQL 791

 Score = 73.6 bits (179), Expect = 4e-11
 Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 6/174 (3%)
 Frame = +3

Query: 1764 DLDSLEEAIASGD---KKRAQVILSHIPSAIDKHIELANALLETITDPGQRHQIKQSIER 1934
            DLDSL + I  G    + +       I ++I K IE A A  +TITDP ++ Q+  SIE+
Sbjct: 504  DLDSLIKCIDEGGPDMQVKGVQYAKDIANSIKKQIEAAEAYAQTITDPDRKKQVLDSIEQ 563

Query: 1935 LQTLKPRIIENANRAIANPNDHEARKNLSS---DIKEAKKAIGQISQPYEVVSALNTKIH 2105
            L+ L P+++E     +ANP+D EARK L      +KEA   + Q+ QP         +
Sbjct: 564  LKKLTPQLLEAIRACLANPDDKEARKRLDDVVRRVKEASSNLSQVIQPTADELKEEKRKR 623

Query: 2106 NDLDSLIKCIDEGGPDMQVKGVQYAKDIANSIKKQIEAAEAYAQTITDPDRKKQ 2267
            N+  + I+  ++      +K  + A+  A   KK++   E   + +   + +++
Sbjct: 624  NEEIARIEAEEKAKARALLKAAELARIEAEEEKKRLAIIEEEKKRLAAEEEERK 677

 Score = 69.7 bits (169), Expect = 6e-10
 Identities = 41/113 (36%), Positives = 65/113 (57%), Gaps = 6/113 (5%)
 Frame = +2

Query: 842  VTRASAVLIDNLRTLPKSIEAGN------GPAAAREIVNAANLQISNAIIVANRCQDPVK 1003
            V+  +  + ++L +L K I+ G       G   A++I N+   QI  A   A    DP +
Sbjct: 494  VSALNTKIHNDLDSLIKCIDEGGPDMQVKGVQYAKDIANSIKKQIEAAEAYAQTITDPDR 553

Query: 1004 KKMLLKQIEELKKLTPMLISAMKPVLENPNDQEAQKHLESVIYSTQKASEALA 1162
            KK +L  IE+LKKLTP L+ A++  L NP+D+EA+K L+ V+   ++AS  L+
Sbjct: 554  KKQVLDSIEQLKKLTPQLLEAIRACLANPDDKEARKRLDDVVRRVKEASSNLS 606

 Score = 47.0 bits (110), Expect(2) = 9e-05
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
 Frame = +2

Query: 839  EVTRASAV-LIDNLRTLPKSIEAGNGPAAA---REIVNAANLQISNAIIVANRCQDPVKK 1006
            E+  AS V L  +L +L ++I +G+   A      I +A +  I  A  +     DP ++
Sbjct: 377  EIVAASGVSLARDLDSLEEAIASGDKKRAQVILSHIPSAIDKHIELANALLETITDPGQR 436

Query: 1007 KMLLKQIEELKKLTPMLISAMKPVLENPNDQEAQKHLESVIYSTQKA 1147
              + + IE L+ L P +I      + NPND EA+K+L S I   +KA
Sbjct: 437  HQIKQSIERLQTLKPRIIENANRAIANPNDHEARKNLSSDIKEAKKA 483

 Score = 25.0 bits (53), Expect(2) = 9e-05
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 1173 VSSPAEIVAASGVSLARDLDSLEEAI 1250
            +S P E+V+A    +  DLDSL + I
Sbjct: 487  ISQPYEVVSALNTKIHNDLDSLIKCI 512

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 4,168,372,931
Number of extensions: 72229403
Number of successful extensions: 235092
Number of sequences better than 10.0: 39
Number of HSP's gapped: 234935
Number of HSP's successfully gapped: 59
Length of query: 1047
Length of database: 1,051,180,864
Length adjustment: 139
Effective length of query: 908
Effective length of database: 601,299,163
Effective search space: 545979640004
Effective search space used: 545979640004
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.80  gvh: 0.42  alm: 0.31  top: 0.33  tms: 0.07  mit: 0.21  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 1.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: nuclear
	 24.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U15533-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 53
AF (FL, S) 3
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 3
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0