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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15477-1
Contig ID Contig-U15477-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15477-1 (Contig-U15477-1Q) /CSM_Contig/Contig-U15477-1Q.Seq.d
AAAAAAACAAGGAAAAATTATAATTATTTTAATATTATTATTGTTAAACA
ATAAACCAAATTAAAAAATGACTTTATCAGTGGAACAAATTTCAAAATTG
GAGGATTCTAAAATAAGAGCCAAGAAAGTGTATGAAAATTATGATGAAAA
ATTAAATAATTTTTTAAATGAACAATTGGTTGAATTAAAGAAACAAAACA
ACTCAATTTCAAATTTTAGTGAGAATGAAATTAAAGATTTGAAAATTTCA
TTCCAATCAATTCAATCTGAAAAAAGTGCCAAAGAACTTTACAGTGAAAT
GCCATTTCCAGAAATGTGGGAAATATTGGGTCTTGCAATGAGTGCTGATC
CTTCAGGTGTTGCTCCAATTATTTTCGGTGCTATTAATATTCTTTTTAAT
AGTCTCGGTTTATTTAATTCCCAAGAACAATTCTTTAAACAAATAATGGA
AGCAGTTGAAAAATTAATTGACCATAAGTTAAGTCAAGAAAGAGAGAGAC
AATGTATAATTAAATTCCAACAACTTCAAAAAAAACTGGCGATGACTATT
TTTGTATTAGCTGAAGAATATTTTTCAAGAAATGGAAATAAAAATGTTAG
TCGTAGTATTATTCCAAATGATATTCAAGTAATGACTAATGAACAACTTA
ATTCTTCACTTCAATTTCAATTAATGATGTATCGTGATAAAATAACTGAT
GGTTTAATTTATTTTAAGGAAGAAAGTGAATTAATTAATACCATTGGTTT
TTATATTTTAACAGCTTCACAATATCTTTGTTTACAAAGAGATTGTCATC
TTTATGGTAAAGAATGGGGTTTCAGTGATTTTGATGTTGAAGATGCAAAA
AAAAAAATTCATGATTATACAATAGAATTTTTTGAAATCACTGTTAAATC
AGGTTGGATGCTTTCCCGTCATATTTTTAGAGAAGAAACTTCCCCAATTA
TTGGTTATTATATACCACCATACTTTAATGCTGTAAGAAAATTCAAAAAT
GCAGACTTTACCTATTATCCTCTTAGAGCATTTGATTACCAAAGAAATAT
TGGTGAAATTCATTTTAATTGTGGTGATGAAAGAGGTTCCCACTTACTTT
ACCCAGGTTTAATTGCAGGGTTTTCTCAAGTTACCAATAGTTTATCTTCT
GGGTTTAGAGGACTTAATGCAGGAAATTTAAATTTACAAGCAACTTTGAT
TGTAAAGTTTGAAAGTATTAAAAAAAGATCATTTAAAGTTAAGATACATC
ATCATATTAATGGCAATGCTACATGGGTTGTTGAAAGTGGTCCTGTTTCA
GAAGTGTTAAGTTTTAATCAAGGTACTGAACAAGAATTTAGAAACTCTTA
CTTTGTTTATAATGAAAATTTCCAAAATCCACCACATGCCACTAATGAAT
CCAAGCTTATTACAGTAGAAAATGAACAAGTCATATTTAAATGTATTAGA
TCTATGAATGGTGGTACAAAAACTGGGTATAATGCAGATTCAAAACTATA
TTTAATTGAACTTATTTTTGATTAATTGGAAACACAAATGGCCTCTTGGT
TGTAGATTGATTTGATGATGTACTCATACATCCTATTAAGTCCTATTAAA
CTAAAAATAAAAAATAAATTTAACTTTGGCACTTTTT
Gap no gap
Contig length 1637
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 7454310
End point 7452752
Strand (PLUS/MINUS) MINUS
Number of clones 20
Number of EST 37
Link to clone list U15477
List of clone(s) 

est1=VFK782F,1,653
est2=VFM551F,21,424
est3=VFH857F,29,609
est4=AFE736E,31,1604
est5=VFO105F,31,610
est6=VFG421F,34,654
est7=AFK405F,36,682
est8=VFD206F,37,625
est9=VFG293F,40,630
est10=VFM290F,40,638
est11=AFK554F,43,590
est12=VFD530F,43,660
est13=VFO730F,44,654
est14=VFJ410F,45,645
est15=VFH265F,46,659
est16=AFL201F,61,650
est17=VFJ881F,213,808
est18=VFF432F,255,852
est19=VFJ410Z,841,1587
est20=SFG146Z,856,1584
est21=VFG421Z,904,1581
est22=VFF432Z,905,1610
est23=VFJ881Z,910,1595
est24=AFK554Z,914,1637
est25=AFK405Z,915,1608
est26=VFG293Z,918,1637
est27=VFD206Z,932,1608
est28=VFM551Z,935,1613
est29=VFD530Z,947,1602
est30=VFM290Z,957,1611
est31=VFO105Z,967,1519
est32=AFL201Z,1002,1613
est33=VFH857Z,1020,1611
est34=VHC181Z,1021,1608
est35=VFK782Z,1081,1577
est36=VFO730Z,1100,1570
est37=VFH265Z,1107,1575
Translated Amino Acid sequence 
kkqgkiiiilillllnnkpn*KMTLSVEQISKLEDSKIRAKKVYENYDEKLNNFLNEQLV
ELKKQNNSISNFSENEIKDLKISFQSIQSEKSAKELYSEMPFPEMWEILGLAMSADPSGV
APIIFGAINILFNSLGLFNSQEQFFKQIMEAVEKLIDHKLSQERERQCIIKFQQLQKKLA
MTIFVLAEEYFSRNGNKNVSRSIIPNDIQVMTNEQLNSSLQFQLMMYRDKITDGLIYFKE
ESELINTIGFYILTASQYLCLQRDCHLYGKEWGFSDFDVEDAKKKIHDYTIEFFEITVKS
GWMLSRHIFREETSPIIGYYIPPYFNAVRKFKNADFTYYPLRAFDYQRNIGEIHFNCGDE
RGSHLLYPGLIAGFSQVTNSLSSGFRGLNAGNLNLQATLIVKFESIKKRSFKVKIHHHIN
GNATWVVESGPVSEVLSFNQGTEQEFRNSYFVYNENFQNPPHATNESKLITVENEQVIFK
CIRSMNGGTKTGYNADSKLYLIELIFD*letqmaswl*idlmmysyillspiklkiknkf
nfgtf
Translated Amino Acid sequence (All Frames) 
Frame A:
kktrknynyfniiivkq*tklkndfisgtnfkiggf*nksqesv*kl**kik*ffk*tig
*iketkqlnfkf**e*n*rfenfipinsi*kkcqrtlq*naisrnvgnigscnec*sfrc
csnyfrcy*ysf**srfi*fprtil*tnngss*kin*p*vksrkretmyn*ipttskktg
ddyfcis*riffkkwk*kc*s*yysk*yssnd**tt*fftsisindvs**nn*wfnlf*g
rk*in*yhwflyfnsftislftkrlsslw*rmgfq*f*c*rckkkns*lynrif*nhc*i
rldafpsyf*rrnfpnywllyttil*cckkiqkcrlyllss*si*lpkkyw*nsf*lw**
krfpltlprfncrvfssyq*fifwv*rt*crkfkftsnfdckv*ky*kkii*s*dtssy*
wqcymgc*kwscfrsvkf*sry*tri*klllcl**kfpksttch**iqayysrk*tshi*
my*iyewwyknwv*crfktifn*tyf*ligntngllvvd*fddvlihpiksy*tknkk*i
*lwhf


Frame B:
kkqgkiiiilillllnnkpn*KMTLSVEQISKLEDSKIRAKKVYENYDEKLNNFLNEQLV
ELKKQNNSISNFSENEIKDLKISFQSIQSEKSAKELYSEMPFPEMWEILGLAMSADPSGV
APIIFGAINILFNSLGLFNSQEQFFKQIMEAVEKLIDHKLSQERERQCIIKFQQLQKKLA
MTIFVLAEEYFSRNGNKNVSRSIIPNDIQVMTNEQLNSSLQFQLMMYRDKITDGLIYFKE
ESELINTIGFYILTASQYLCLQRDCHLYGKEWGFSDFDVEDAKKKIHDYTIEFFEITVKS
GWMLSRHIFREETSPIIGYYIPPYFNAVRKFKNADFTYYPLRAFDYQRNIGEIHFNCGDE
RGSHLLYPGLIAGFSQVTNSLSSGFRGLNAGNLNLQATLIVKFESIKKRSFKVKIHHHIN
GNATWVVESGPVSEVLSFNQGTEQEFRNSYFVYNENFQNPPHATNESKLITVENEQVIFK
CIRSMNGGTKTGYNADSKLYLIELIFD*letqmaswl*idlmmysyillspiklkiknkf
nfgtf


Frame C:
knkekl*lf*yyyc*tinqikk*lyqwnkfqnwrilk*eprkcmkimmkn*iif*mnnwl
n*rnkttqfqilvrmklki*kfhsnqfnlkkvpknftvkchfqkcgkywvlq*vlilqvl
lqlfsvllifflivsvylipknnslnk*wkqlkn*ltis*vkkerdnv*lnsnnfkknwr
*lfly*lknifqemeikmlvvvlfqmifk**lmnnlilhfnfn**civik*lmv*filrk
kvn*liplvfif*qlhnifvykeivifmvkngvsvilmlkmqkkkfmiiq*nflksllnq
vgcfpviflekklpqllviiyhhtlml*enskmqtlpiillehlitkeilvkfilivvmk
evptyftqv*lqgflklpivyllgledlmqei*iykql*l*slkvlkkdhlklryiiilm
amlhgllkvvlfqkc*vlikvlnknletltlfimkiskihhmplmnpsllq*kmnksyln
vldl*mvvqklgimqiqnyi*lnlflinwkhkwplgcrli**cthtsy*vlln*k*kinl
tlalf
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15477-1 (Contig-U15477-1Q)
/CSM_Contig/Contig-U15477-1Q.Seq.d
         (1637 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15477-1 (Contig-U15477-1Q) /CSM_Contig/Conti...  2872  0.0
Contig-U14392-1 (Contig-U14392-1Q) /CSM_Contig/Conti...    40  0.011
Contig-U16152-1 (Contig-U16152-1Q) /CSM_Contig/Conti...    38  0.042
Contig-U14527-1 (Contig-U14527-1Q) /CSM_Contig/Conti...    38  0.042
Contig-U10512-1 (Contig-U10512-1Q) /CSM_Contig/Conti...    38  0.042
Contig-U04863-1 (Contig-U04863-1Q) /CSM_Contig/Conti...    38  0.042
Contig-U16460-1 (Contig-U16460-1Q) /CSM_Contig/Conti...    36  0.17
Contig-U16339-1 (Contig-U16339-1Q) /CSM_Contig/Conti...    36  0.17
Contig-U16037-1 (Contig-U16037-1Q) /CSM_Contig/Conti...    36  0.17
Contig-U15642-1 (Contig-U15642-1Q) /CSM_Contig/Conti...    36  0.17

>Contig-U15477-1 (Contig-U15477-1Q) /CSM_Contig/Contig-U15477-1Q.Seq.d
          Length = 1637

 Score = 2872 bits (1449), Expect = 0.0
 Identities = 1501/1527 (98%)
 Strand = Plus / Plus

                                                                        
Query: 70   gactttatcagtggaacaaatttcaaaattggaggattctaaaataagagccaagaaagt 129
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70   gactttatcagtggaacaaatttcaaaattggaggattctaaaataagagccaagaaagt 129

                                                                        
Query: 130  gtatgaaaattatgatgaaaaattaaataattttttaaatgaacaattggttgaattaaa 189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130  gtatgaaaattatgatgaaaaattaaataattttttaaatgaacaattggttgaattaaa 189

                                                                        
Query: 190  gaaacaaaacaactcaatttcaaattttagtgagaatgaaattaaagatttgaaaatttc 249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190  gaaacaaaacaactcaatttcaaattttagtgagaatgaaattaaagatttgaaaatttc 249

                                                                        
Query: 250  attccaatcaattcaatctgaaaaaagtgccaaagaactttacagtgaaatgccatttcc 309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250  attccaatcaattcaatctgaaaaaagtgccaaagaactttacagtgaaatgccatttcc 309

                                                                        
Query: 310  agaaatgtgggaaatattgggtcttgcaatgagtgctgatccttcaggtgttgctccaat 369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310  agaaatgtgggaaatattgggtcttgcaatgagtgctgatccttcaggtgttgctccaat 369

                                                                        
Query: 370  tattttcggtgctattaatattctttttaatagtctcggtttatttaattcccaagaaca 429
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370  tattttcggtgctattaatattctttttaatagtctcggtttatttaattcccaagaaca 429

                                                                        
Query: 430  attctttaaacaaataatggaagcagttgaaaaattaattgaccataagttaagtcaaga 489
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430  attctttaaacaaataatggaagcagttgaaaaattaattgaccataagttaagtcaaga 489

                                                                        
Query: 490  aagagagagacaatgtataattaaattccaacaacttcnnnnnnnnctggcgatgactat 549
            ||||||||||||||||||||||||||||||||||||||        ||||||||||||||
Sbjct: 490  aagagagagacaatgtataattaaattccaacaacttcaaaaaaaactggcgatgactat 549

                                                                        
Query: 550  ttttgtattagctgaagaatatttttcaagaaatggaaataaaaatgttagtcgtagtat 609
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550  ttttgtattagctgaagaatatttttcaagaaatggaaataaaaatgttagtcgtagtat 609

                                                                        
Query: 610  tattccaaatgatattcaagtaatgactaatgaacaacttaattcttcacttcaatttca 669
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610  tattccaaatgatattcaagtaatgactaatgaacaacttaattcttcacttcaatttca 669

                                                                        
Query: 670  attaatgatgtatcgtgataaaataactgatggtttaatttattttaaggaagaaagtga 729
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670  attaatgatgtatcgtgataaaataactgatggtttaatttattttaaggaagaaagtga 729

                                                                        
Query: 730  attaattaataccattggtttttatattttaacagcttcacaatatctttgtttacaaag 789
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730  attaattaataccattggtttttatattttaacagcttcacaatatctttgtttacaaag 789

                                                                        
Query: 790  agattgtcatctttatggtaaagaatggggtttcagtgattttgatgttgaagatgcnnn 849
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 790  agattgtcatctttatggtaaagaatggggtttcagtgattttgatgttgaagatgcaaa 849

                                                                        
Query: 850  nnnnnnnnttcatgattatacaatagaattttttgaaatcactgttaaatcaggttggat 909
                    ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850  aaaaaaaattcatgattatacaatagaattttttgaaatcactgttaaatcaggttggat 909

                                                                        
Query: 910  gctttcccgtcatatttttagagaagaaacttccccaattattggttattatataccacc 969
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910  gctttcccgtcatatttttagagaagaaacttccccaattattggttattatataccacc 969

                                                                        
Query: 970  atactttaatgctgtaagaaaattcaaaaatgcagactttacctattatcctcttagagc 1029
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970  atactttaatgctgtaagaaaattcaaaaatgcagactttacctattatcctcttagagc 1029

                                                                        
Query: 1030 atttgattaccaaagaaatattggtgaaattcattttaattgtggtgatgaaagaggttc 1089
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1030 atttgattaccaaagaaatattggtgaaattcattttaattgtggtgatgaaagaggttc 1089

                                                                        
Query: 1090 ccacttactttacccaggtttaattgcagggttttctcaagttaccaatagtttatcttc 1149
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1090 ccacttactttacccaggtttaattgcagggttttctcaagttaccaatagtttatcttc 1149

                                                                        
Query: 1150 tgggtttagaggacttaatgcaggaaatttaaatttacaagcaactttgattgtaaagtt 1209
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1150 tgggtttagaggacttaatgcaggaaatttaaatttacaagcaactttgattgtaaagtt 1209

                                                                        
Query: 1210 tgaaagtattnnnnnnngatcatttaaagttaagatacatcatcatattaatggcaatgc 1269
            ||||||||||       |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1210 tgaaagtattaaaaaaagatcatttaaagttaagatacatcatcatattaatggcaatgc 1269

                                                                        
Query: 1270 tacatgggttgttgaaagtggtcctgtttcagaagtgttaagttttaatcaaggtactga 1329
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1270 tacatgggttgttgaaagtggtcctgtttcagaagtgttaagttttaatcaaggtactga 1329

                                                                        
Query: 1330 acaagaatttagaaactcttactttgtttataatgaaaatttccaaaatccaccacatgc 1389
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1330 acaagaatttagaaactcttactttgtttataatgaaaatttccaaaatccaccacatgc 1389

                                                                        
Query: 1390 cactaatgaatccaagcttattacagtagaaaatgaacaagtcatatttaaatgtattag 1449
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1390 cactaatgaatccaagcttattacagtagaaaatgaacaagtcatatttaaatgtattag 1449

                                                                        
Query: 1450 atctatgaatggtggtacaaaaactgggtataatgcagattcaaaactatatttaattga 1509
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1450 atctatgaatggtggtacaaaaactgggtataatgcagattcaaaactatatttaattga 1509

                                                                        
Query: 1510 acttatttttgattaattggaaacacaaatggcctcttggttgtagattgatttgatgat 1569
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1510 acttatttttgattaattggaaacacaaatggcctcttggttgtagattgatttgatgat 1569

                                       
Query: 1570 gtactcatacatcctattaagtcctat 1596
            |||||||||||||||||||||||||||
Sbjct: 1570 gtactcatacatcctattaagtcctat 1596


 Score = 38.2 bits (19), Expect = 0.042
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 1619 tttaactttggcacttttt 1637
            |||||||||||||||||||
Sbjct: 1619 tttaactttggcacttttt 1637


>Contig-U14392-1 (Contig-U14392-1Q) /CSM_Contig/Contig-U14392-1Q.Seq.d
          Length = 798

 Score = 40.1 bits (20), Expect = 0.011
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 141 atgatgaaaaattaaataat 160
           ||||||||||||||||||||
Sbjct: 655 atgatgaaaaattaaataat 674


>Contig-U16152-1 (Contig-U16152-1Q) /CSM_Contig/Contig-U16152-1Q.Seq.d
          Length = 1975

 Score = 38.2 bits (19), Expect = 0.042
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 144 atgaaaaattaaataattt 162
           |||||||||||||||||||
Sbjct: 593 atgaaaaattaaataattt 611


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 38,491
Number of Sequences: 8402
Number of extensions: 38491
Number of successful extensions: 4319
Number of sequences better than 10.0: 163
length of query: 1637
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1621
effective length of database: 7,941,110
effective search space: 12872539310
effective search space used: 12872539310
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 1.28
Homology vs DNA 
Query= Contig-U15477-1 (Contig-U15477-1Q) /CSM_Contig/Contig-U15477-1Q.Seq.d
         (1637 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ432553) Dictyostelium discoideum cDNA clone:ddv19d04, 3' ...   712   0.0    2
(BJ400464) Dictyostelium discoideum cDNA clone:dds13k11, 3' ...   704   0.0    2
(BJ339777) Dictyostelium discoideum cDNA clone:dda10h09, 3' ...   682   0.0    2
(BJ343298) Dictyostelium discoideum cDNA clone:dda22k13, 3' ...   674   0.0    5
(BJ431353) Dictyostelium discoideum cDNA clone:ddv13i24, 3' ...   666   0.0    4
(BJ431178) Dictyostelium discoideum cDNA clone:ddv13j06, 3' ...   626   0.0    2
(BJ414888) Dictyostelium discoideum cDNA clone:ddv20b22, 5' ...   624   0.0    3
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...   622   0.0    10
(BJ435246) Dictyostelium discoideum cDNA clone:ddv26e13, 3' ...   622   0.0    2
(BJ428308) Dictyostelium discoideum cDNA clone:ddv11p08, 3' ...   622   0.0    3
(BJ435013) Dictyostelium discoideum cDNA clone:ddv25c24, 3' ...   617   0.0    2
(BJ430700) Dictyostelium discoideum cDNA clone:ddv8k07, 3' e...   617   0.0    2
(BJ433089) Dictyostelium discoideum cDNA clone:ddv20b22, 3' ...   615   0.0    2
(BJ430401) Dictyostelium discoideum cDNA clone:ddv7k02, 3' e...   615   0.0    3
(BJ410161) Dictyostelium discoideum cDNA clone:ddv11p08, 5' ...   589   0.0    3
(BJ435951) Dictyostelium discoideum cDNA clone:ddv29i01, 3' ...   555   0.0    3
(BJ344957) Dictyostelium discoideum cDNA clone:dda21j02, 3' ...   523   0.0    4
(BJ434310) Dictyostelium discoideum cDNA clone:ddv16b16, 3' ...   622   0.0    2
(BJ437902) Dictyostelium discoideum cDNA clone:ddv35a21, 3' ...   622   0.0    2
(BJ345210) Dictyostelium discoideum cDNA clone:dda23a02, 3' ...   648   0.0    2
(BJ412418) Dictyostelium discoideum cDNA clone:ddv8k07, 5' e...   652   0.0    4
(BJ413419) Dictyostelium discoideum cDNA clone:ddv15a18, 5' ...   652   0.0    4
(BJ323387) Dictyostelium discoideum cDNA clone:dda10h09, 5' ...   652   0.0    4
(BJ417375) Dictyostelium discoideum cDNA clone:ddv30l07, 5' ...   652   0.0    4
(BJ412860) Dictyostelium discoideum cDNA clone:ddv13j06, 5' ...   652   0.0    4
(BJ415499) Dictyostelium discoideum cDNA clone:ddv22d21, 5' ...   652   0.0    4
(BJ414396) Dictyostelium discoideum cDNA clone:ddv19d04, 5' ...   652   0.0    4
(BJ416318) Dictyostelium discoideum cDNA clone:ddv25c24, 5' ...   644   0.0    4
(BJ327613) Dictyostelium discoideum cDNA clone:dda21j02, 5' ...   565   0.0    5
(BJ412150) Dictyostelium discoideum cDNA clone:ddv7k02, 5' e...   652   0.0    4
(BJ413646) Dictyostelium discoideum cDNA clone:ddv16b16, 5' ...   652   0.0    3
(BJ433733) Dictyostelium discoideum cDNA clone:ddv22d21, 3' ...   622   0.0    2
(BJ417010) Dictyostelium discoideum cDNA clone:ddv29i01, 5' ...   652   0.0    4
(BJ328107) Dictyostelium discoideum cDNA clone:dda23a02, 5' ...   565   0.0    4
(BJ431770) Dictyostelium discoideum cDNA clone:ddv15a18, 3' ...   622   0.0    2
(BJ413019) Dictyostelium discoideum cDNA clone:ddv13i24, 5' ...   557   0.0    4
(BJ328022) Dictyostelium discoideum cDNA clone:dda22k13, 5' ...   565   0.0    4
(BJ436211) Dictyostelium discoideum cDNA clone:ddv30l07, 3' ...   488   0.0    2
(BJ416472) Dictyostelium discoideum cDNA clone:ddv26e13, 5' ...   448   e-152  2
(L22736) Dictyostelium discoideum heat shock protein (hspB) ...   167   2e-36  1
(AM180355) Clostridium difficile 630 complete genome.              38   0.034  22
(FI206325) CccaBa010-I22TV CccABa Cajanus cajan genomic clon...    50   0.27   1
(EK307790) 1095462386891 Global-Ocean-Sampling_GS-31-01-01-1...    36   0.40   3
(BB023763) Mus musculus adult male pituitary gland cDNA, RIK...    44   0.57   2
(AC140981) Mus musculus chromosome 9 clone RP23-282G22, comp...    46   0.60   8
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    32   0.65   11
(AE017308) Mycoplasma mobile 163K complete genome.                 34   0.73   20
(AC152587) Bos taurus clone CH240-9A8, WORKING DRAFT SEQUENC...    48   0.89   4
(AC154601) Mus musculus BAC clone RP23-342J18 from chromosom...    38   0.93   8
(CR932488) Paramecium tetraurelia, Small GTPase eng, putativ...    48   1.1    1
(AC149698) Bos taurus clone CH240-407N7, WORKING DRAFT SEQUE...    48   1.1    1
(AC142060) Rattus norvegicus clone CH230-21H3, *** SEQUENCIN...    48   1.1    1
(AC141179) Rattus norvegicus clone CH230-372E7, WORKING DRAF...    48   1.1    1
(AC107009) Rattus norvegicus clone CH230-194H21, *** SEQUENC...    48   1.1    1
(AC166691) Bos taurus clone CH240-177A3, WORKING DRAFT SEQUE...    48   1.1    1
(BB323019) Mus musculus adult male adrenal gland cDNA, RIKEN...    48   1.1    1
(FH539277) CHO_OF4769xa05f1.ab1 CHO_OF4 Nicotiana tabacum ge...    36   1.1    3
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont...    30   1.2    15
(FH539361) CHO_OF4769xa05r1.ab1 CHO_OF4 Nicotiana tabacum ge...    36   1.2    3
(AC128705) Mus musculus BAC clone RP23-443P12 from chromosom...    46   1.4    7
(AV272851) Mus musculus adult male testis cDNA, RIKEN full-l...    44   1.7    2
(AE017263) Mesoplasma florum L1 complete genome.                   40   2.0    19
(AM477084) Vitis vinifera contig VV78X050214.9, whole genome...    34   2.0    7
(AC004523) Homo sapiens chromosome 19, cosmid F22329, comple...    46   2.1    3
(AC019132) Homo sapiens chromosome 6 clone RP11-575G14, WORK...    34   3.1    10
(AX347077) Sequence 2148 from Patent WO0200928.                    32   3.4    11
(AC019170) Homo sapiens BAC clone RP11-162G9 from 4, complet...    42   4.1    6
(CT033838) Zebrafish DNA sequence from clone CH211-176L24 in...    46   4.2    1
(BX571958) Zebrafish DNA sequence from clone DKEY-240E12 in ...    46   4.2    1
(AM465213) Vitis vinifera contig VV78X137549.2, whole genome...    46   4.2    1
(AM436029) Vitis vinifera contig VV78X028697.14, whole genom...    46   4.2    1
(AC068845) Homo sapiens chromosome 19 clone RP11-737I1 map 1...    46   4.2    1
(AC223982) Bos taurus clone CH240-453E21, WORKING DRAFT SEQU...    46   4.2    1
(AC188217) Colobus guereza clone CH272-31H5, WORKING DRAFT S...    46   4.2    1
(AZ883968) RPCI-23-192L6.TV RPCI-23 Mus musculus genomic clo...    46   4.2    1
(AG140460) Pan troglodytes DNA, clone: PTB-155E02.R.               46   4.2    1
(BG444671) GA__Ea0025C09f Gossypium arboreum 7-10 dpa fiber ...    46   4.2    1
(ES843639) UFL_102_14 Cotton fiber 0-10 day post anthesis Go...    46   4.2    1
(AC190208) Pan troglodytes BAC clone CH251-641K21 from chrom...    40   4.4    8
(CU302234) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   4.9    7
(AM427641) Vitis vinifera contig VV78X145024.5, whole genome...    38   6.0    3
(AC206175) Zea mays chromosome unknown clone CH201-45J8; ZMM...    40   6.5    4
(CR548612) Paramecium tetraurelia macronuclear largest chrom...    34   6.7    21
(AC008438) Homo sapiens chromosome 5 clone CTC-329D1, comple...    42   7.4    2
(EU637017) Adineta vaga glycoprotein gene, partial cds; and ...    32   8.3    7
(AC172649) Bos taurus clone CH240-258C12, WORKING DRAFT SEQU...    40   8.6    7
(AC147496) Medicago truncatula clone mth2-6i7, complete sequ...    34   8.9    10
(BX548174) Prochlorococcus marinus MED4 complete genome.           38   9.9    23

>(BJ432553) Dictyostelium discoideum cDNA clone:ddv19d04, 3' end,
            single read.
          Length = 746

 Score =  712 bits (359), Expect(2) = 0.0
 Identities = 361/362 (99%)
 Strand = Plus / Minus


Query: 858  ttcatgattatacaatagaattttttgaaatcactgttaaatcaggttggatgctttccc 917
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 729  ttcatgattatacaatagaattttttgaaatcactgttaaatcaggttgnatgctttccc 670


Query: 918  gtcatatttttagagaagaaacttccccaattattggttattatataccaccatacttta 977
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669  gtcatatttttagagaagaaacttccccaattattggttattatataccaccatacttta 610


Query: 978  atgctgtaagaaaattcaaaaatgcagactttacctattatcctcttagagcatttgatt 1037
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609  atgctgtaagaaaattcaaaaatgcagactttacctattatcctcttagagcatttgatt 550


Query: 1038 accaaagaaatattggtgaaattcattttaattgtggtgatgaaagaggttcccacttac 1097
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549  accaaagaaatattggtgaaattcattttaattgtggtgatgaaagaggttcccacttac 490


Query: 1098 tttacccaggtttaattgcagggttttctcaagttaccaatagtttatcttctgggttta 1157
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489  tttacccaggtttaattgcagggttttctcaagttaccaatagtttatcttctgggttta 430


Query: 1158 gaggacttaatgcaggaaatttaaatttacaagcaactttgattgtaaagtttgaaagta 1217
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429  gaggacttaatgcaggaaatttaaatttacaagcaactttgattgtaaagtttgaaagta 370


Query: 1218 tt 1219
            ||
Sbjct: 369  tt 368

 Score =  622 bits (314), Expect(2) = 0.0
 Identities = 314/314 (100%)
 Strand = Plus / Minus


Query: 1227 gatcatttaaagttaagatacatcatcatattaatggcaatgctacatgggttgttgaaa 1286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360  gatcatttaaagttaagatacatcatcatattaatggcaatgctacatgggttgttgaaa 301


Query: 1287 gtggtcctgtttcagaagtgttaagttttaatcaaggtactgaacaagaatttagaaact 1346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300  gtggtcctgtttcagaagtgttaagttttaatcaaggtactgaacaagaatttagaaact 241


Query: 1347 cttactttgtttataatgaaaatttccaaaatccaccacatgccactaatgaatccaagc 1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240  cttactttgtttataatgaaaatttccaaaatccaccacatgccactaatgaatccaagc 181


Query: 1407 ttattacagtagaaaatgaacaagtcatatttaaatgtattagatctatgaatggtggta 1466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180  ttattacagtagaaaatgaacaagtcatatttaaatgtattagatctatgaatggtggta 121


Query: 1467 caaaaactgggtataatgcagattcaaaactatatttaattgaacttatttttgattaat 1526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120  caaaaactgggtataatgcagattcaaaactatatttaattgaacttatttttgattaat 61


Query: 1527 tggaaacacaaatg 1540
            ||||||||||||||
Sbjct: 60   tggaaacacaaatg 47

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 2,088,639,861
Number of extensions: 132456321
Number of successful extensions: 11256898
Number of sequences better than 10.0: 89
Length of query: 1637
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1613
Effective length of database: 96,409,374,237
Effective search space: 155508320644281
Effective search space used: 155508320644281
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.16
Homology vs Protein 
Query= Contig-U15477-1 (Contig-U15477-1Q) /CSM_Contig/Contig-U15477-1Q.Seq.d
         (1637 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117075_61(AC117075|pid:none) Dictyostelium discoideum chromoso...   684   0.0
AC117075_62(AC117075|pid:none) Dictyostelium discoideum chromoso...   208   4e-52
(P11872) RecName: Full=cAMP-regulated M3R protein; AltName: Full...    61   1e-07
(Q45704) RecName: Full=Pesticidal crystal protein cry8Aa; AltNam...    50   2e-04
AX712169_1(AX712169|pid:none) Sequence 3 from Patent WO03018810....    49   5e-04
(P0A379) RecName: Full=Pesticidal crystal protein cry3Aa; AltNam...    49   5e-04
AY572010_1(AY572010|pid:none) Bacillus thuringiensis strain YM-0...    49   5e-04
M30503_1(M30503|pid:none) B.thuringiensis coleopteran-specific i...    49   5e-04
CP000904_96(CP000904|pid:none) Bacillus weihenstephanensis KBAB4...    49   5e-04
AX712174_1(AX712174|pid:none) Sequence 8 from Patent WO03018810.       49   5e-04
AX712186_1(AX712186|pid:none) Sequence 20 from Patent WO03018810.      49   5e-04
X73600_1(X73600|pid:none) Synthetic cryIIIA gene.                      49   5e-04
A27323(A27323;A26853;A29987;A28407;S60781;I39812;I39813) paraspo...    49   5e-04
AX712172_1(AX712172|pid:none) Sequence 6 from Patent WO03018810.       48   0.001
CS130970_1(CS130970|pid:none) Sequence 25 from Patent WO20050663...    46   0.003
AX543952_1(AX543952|pid:none) Sequence 29 from Patent WO0234774....    46   0.003
CS130978_1(CS130978|pid:none) Sequence 33 from Patent WO20050663...    46   0.003
AX543934_1(AX543934|pid:none) Sequence 11 from Patent WO0234774....    46   0.003
AB115422_6(AB115422|pid:none) Paenibacillus lentimorbus orf1-A, ...    46   0.005
(Q9XDL1) RecName: Full=Pesticidal crystal protein cry1Id; AltNam...    45   0.010
AY518201_1(AY518201|pid:none) Bacillus thuringiensis HBF-1 CryII...    44   0.013
(Q45706) RecName: Full=Pesticidal crystal protein cry8Ca; AltNam...    44   0.013
CS131022_1(CS131022|pid:none) Sequence 77 from Patent WO20050663...    44   0.022
CS130994_1(CS130994|pid:none) Sequence 49 from Patent WO20050663...    43   0.029
CQ868301_1(CQ868301|pid:none) Sequence 2 from Patent WO200407446...    43   0.029
CS130988_1(CS130988|pid:none) Sequence 43 from Patent WO20050663...    43   0.029
CQ868303_1(CQ868303|pid:none) Sequence 4 from Patent WO200407446...    43   0.029
(Q9X597) RecName: Full=Pesticidal crystal protein cry26Aa; AltNa...    43   0.038
(Q45705) RecName: Full=Pesticidal crystal protein cry8Ba; AltNam...    42   0.065
(Q45707) RecName: Full=Pesticidal crystal protein cry7Ab; AltNam...    42   0.085
(Q45739) RecName: Full=Pesticidal crystal protein cry1Bb; AltNam...    42   0.085
(Q9ZAZ5) RecName: Full=Pesticidal crystal protein cry1Bd; AltNam...    42   0.085
FJ194973_1(FJ194973|pid:none) Bacillus thuringiensis strain HQ12...    42   0.085
EU677422_1(EU677422|pid:none) Bacillus thuringiensis strain GS8 ...    41   0.11
A27529_1(A27529|pid:none) B.thuringiensis PS81A2 endotoxin gene.       41   0.11
AB303980_1(AB303980|pid:none) Bacillus thuringiensis cry8Dlike g...    41   0.11
(Q03745) RecName: Full=Pesticidal crystal protein cry1Eb; AltNam...    41   0.11
AB089299_1(AB089299|pid:none) Bacillus thuringiensis serovar gal...    41   0.11
DQ535488_1(DQ535488|pid:none) Bacillus thuringiensis Cry1Ia gene...    40   0.19
AB026261_1(AB026261|pid:none) Bacillus thuringiensis gene for Bt...    40   0.19
AF521013_1(AF521013|pid:none) Bacillus thuringiensis Cry1Ia (cry...    40   0.19
(Q45752) RecName: Full=Pesticidal crystal protein cry1Ia; AltNam...    40   0.19
AF373207_1(AF373207|pid:none) Bacillus thuringiensis Cry1Ia (cry...    40   0.19
AY174873_1(AY174873|pid:none) Bacillus thuringiensis insecticida...    40   0.19
AY788868_1(AY788868|pid:none) Bacillus thuringiensis delta endot...    40   0.19
(P0A369) RecName: Full=Pesticidal crystal protein cry1Aa; AltNam...    40   0.19
AF517127_1(AF517127|pid:none) Bacillus thuringiensis Cry1Ia gene...    40   0.19
AY570733_1(AY570733|pid:none) Bacillus thuringiensis serovar kur...    40   0.19
AX383799_1(AX383799|pid:none) Sequence 27 from Patent WO0214517.       40   0.25
X04698_1(X04698|pid:none) Bacillus thuringiensis berliner 1715 b...    40   0.25
(Q03749) RecName: Full=Pesticidal crystal protein cry7Aa; AltNam...    40   0.25
AY758316_1(AY758316|pid:none) Bacillus thuringiensis serovar jap...    40   0.25
AX383781_1(AX383781|pid:none) Sequence 9 from Patent WO0214517.        40   0.25
AX392804_1(AX392804|pid:none) Sequence 7 from Patent WO0215701.        40   0.25
AF211190_1(AF211190|pid:none) Bacillus thuringiensis plasmid pBT...    40   0.25
AX383797_1(AX383797|pid:none) Sequence 25 from Patent WO0214517.       40   0.25
AX392802_1(AX392802|pid:none) Sequence 5 from Patent WO0215701.        40   0.25
(P0A370) RecName: Full=Pesticidal crystal protein cry1Ab; AltNam...    40   0.25
U94191_1(U94191|pid:none) Bacillus thuringiensis delta endotoxin...    40   0.25
AX392806_1(AX392806|pid:none) Sequence 9 from Patent WO0215701.        40   0.25
AY376665_1(AY376665|pid:none) Synthetic construct Cry1Ab1 (cry1A...    40   0.25
FB707505_1(FB707505|pid:none) Sequence 1 from Patent WO200702777...    40   0.25
AY847289_1(AY847289|pid:none) Bacillus thuringiensis Cry1Ab (cry...    40   0.25
AY950229_1(AY950229|pid:none) Bacillus thuringiensis Cry (cry) g...    40   0.25
A24782_1(A24782|pid:none) plasmid pJD884 replicable en E.coli.         40   0.25
AY430364_1(AY430364|pid:none) Synthetic construct hybrid Cry1Ab-...    40   0.25
AX383785_1(AX383785|pid:none) Sequence 13 from Patent WO0214517.       40   0.25
(P05068) RecName: Full=Pesticidal crystal protein cry1Ac; AltNam...    40   0.25
Y09787_1(Y09787|pid:none) B.thuringiensis cryIA(c) gene.               40   0.25
EU816953_1(EU816953|pid:none) Synthetic construct Cry1ab/ac (cry...    40   0.25
AY326434_1(AY326434|pid:none) Synthetic construct truncated CRYI...    40   0.25
AY730621_1(AY730621|pid:none) Bacillus thuringiensis plasmid Cry...    40   0.25
CS130992_1(CS130992|pid:none) Sequence 47 from Patent WO20050663...    40   0.25
AF177675_1(AF177675|pid:none) Synthetic construct Cry 1Ac insect...    40   0.25
GM968690_1(GM968690|pid:none) Sequence 11 from Patent WO20081454...    40   0.25
FB707509_1(FB707509|pid:none) Sequence 5 from Patent WO2007027777.     40   0.25
AX392800_1(AX392800|pid:none) Sequence 3 from Patent WO0215701.        40   0.25
DQ064597_1(DQ064597|pid:none) Bacillus thuringiensis serovar tol...    40   0.25
CS131024_1(CS131024|pid:none) Sequence 79 from Patent WO20050663...    40   0.25
A29125(A29125)parasporal crystal protein Bt2 - Bacillus thuringi...    40   0.25
AB472847_1(AB472847|pid:none) Synthetic construct gene for insec...    40   0.25
A26513(A26513) parasporal crystal protein - Bacillus thuringiens...    40   0.25
AX441383_1(AX441383|pid:none) Sequence 14 from Patent EP1209237....    40   0.25
I39838(I39838) parasporal crystal protein - Bacillus thuringiens...    40   0.25
DQ241675_1(DQ241675|pid:none) Bacillus thuringiensis isolate BtC...    40   0.25
FJ536844_1(FJ536844|pid:none) Synthetic construct plasmid pSMAcA...    40   0.25
DQ195217_1(DQ195217|pid:none) Bacillus thuringiensis serovar kur...    40   0.32
CU928174_611(CU928174|pid:none) Zygosaccharomyces rouxii strain ...    40   0.32
EU274300_1(EU274300|pid:none) Bacillus thuringiensis serovar mon...    39   0.42
AX543924_1(AX543924|pid:none) Sequence 1 from Patent WO0234774. ...    39   0.42
DQ242516_1(DQ242516|pid:none) Bacillus thuringiensis serovar hua...    39   0.42
DQ212787_1(DQ212787|pid:none) Bacillus thuringiensis strain bt18...    39   0.42
AX543942_1(AX543942|pid:none) Sequence 19 from Patent WO0234774....    39   0.42
EU233027_1(EU233027|pid:none) Bacillus thuringiensis strain Bt P...    39   0.42
M63897_2(M63897|pid:none) Bacillus thuringiensis insecticidal cr...    39   0.42
AX543932_1(AX543932|pid:none) Sequence 9 from Patent WO0234774. ...    39   0.42
AX543928_1(AX543928|pid:none) Sequence 5 from Patent WO0234774.        39   0.42
(Q03744) RecName: Full=Pesticidal crystal protein cry1Ad; AltNam...    39   0.55
A27531_1(A27531|pid:none) B.thuringiensis PS81RR1 endotoxin gene.      39   0.55
(Q45747) RecName: Full=Pesticidal crystal protein cry1Db; AltNam...    39   0.55
AX543930_1(AX543930|pid:none) Sequence 7 from Patent WO0234774.        39   0.55
AX543926_1(AX543926|pid:none) Sequence 3 from Patent WO0234774. ...    39   0.55
AF537267_1(AF537267|pid:none) Synthetic construct insect toxin C...    39   0.55
AX543940_1(AX543940|pid:none) Sequence 17 from Patent WO0234774....    39   0.55
FJ770570_1(FJ770570|pid:none) Bacillus thuringiensis serovar ken...    39   0.72
CS131016_1(CS131016|pid:none) Sequence 71 from Patent WO20050663...    39   0.72
(Q45715) RecName: Full=Pesticidal crystal protein cry1Ka; AltNam...    39   0.72
D17518_1(D17518|pid:none) Bacillus thuringiensis cryIA(a) gene f...    38   0.94
CS130998_1(CS130998|pid:none) Sequence 53 from Patent WO20050663...    38   0.94
AY197341_1(AY197341|pid:none) Bacillus thuringiensis Cry1Aa (cry...    38   0.94
CS131006_1(CS131006|pid:none) Sequence 61 from Patent WO20050663...    38   0.94
CS131030_1(CS131030|pid:none) Sequence 85 from Patent WO20050663...    38   0.94
AF154676_1(AF154676|pid:none) Bacillus thuringiensis subsp. kurs...    38   0.94
AF081790_1(AF081790|pid:none) Bacillus thuringiensis insecticida...    38   0.94
EU447666_1(EU447666|pid:none) Bacillus thuringiensis strain D1 C...    38   0.94
EF094884_1(EF094884|pid:none) Bacillus thuringiensis 146-158-01 ...    38   0.94
AJ130970_1(AJ130970|pid:none) Bacillus thuringiensis gene encodi...    38   1.2
AF492767_1(AF492767|pid:none) Bacillus thuringiensis Cry1Ac gene...    38   1.2
CS131002_1(CS131002|pid:none) Sequence 57 from Patent WO20050663...    38   1.2
CS453697_1(CS453697|pid:none) Sequence 3 from Patent WO2006119457.     38   1.2
AX543954_1(AX543954|pid:none) Sequence 31 from Patent WO0234774.       38   1.2
AX543962_1(AX543962|pid:none) Sequence 39 from Patent WO0234774.       38   1.2
CS131004_1(CS131004|pid:none) Sequence 59 from Patent WO20050663...    38   1.2
CS130966_1(CS130966|pid:none) Sequence 21 from Patent WO20050663...    38   1.2
M73249_1(M73249|pid:none) Bacillus thuringiensis gene, complete ...    38   1.2
AF327925_1(AF327925|pid:none) Bacillus thuringiensis subsp. kunt...    38   1.2
CS131000_1(CS131000|pid:none) Sequence 55 from Patent WO20050663...    38   1.2
GN010326_1(GN010326|pid:none) Sequence 5 from Patent WO2007147029.     38   1.2
CS131032_1(CS131032|pid:none) Sequence 87 from Patent WO20050663...    38   1.2
U43606_1(U43606|pid:none) Bacillus thuringiensis cryIA(c) gene, ...    38   1.2
AF375608_1(AF375608|pid:none) Bacillus thuringiensis Cry1Ab16 (c...    38   1.2
S11445(S11445) parasporal crystal protein cryIA.c - Bacillus thu...    38   1.2
CS453712_1(CS453712|pid:none) Sequence 18 from Patent WO20061194...    38   1.2
DQ212788_1(DQ212788|pid:none) Bacillus thuringiensis Hbf-18-1 ge...    37   1.6
AY590188_1(AY590188|pid:none) Bacillus thuringiensis crystal pro...    37   1.6
AM910994_443(AM910994|pid:none) Plasmodium knowlesi strain H chr...    37   1.6
AY993931_1(AY993931|pid:none) Bacillus thuringiensis delta-endot...    37   1.6
DQ023296_1(DQ023296|pid:none) Bacillus thuringiensis isolate SK-...    37   1.6
DQ318860_1(DQ318860|pid:none) Bacillus thuringiensis toxin pbt14...    37   1.6
AX543946_1(AX543946|pid:none) Sequence 23 from Patent WO0234774.       37   2.7
(P0A366) RecName: Full=Pesticidal crystal protein cry1Aa; AltNam...    37   2.7
A22617(A22617) parasporal crystal protein cry1Aa1 - Bacillus thu...    37   2.7
AX543956_1(AX543956|pid:none) Sequence 33 from Patent WO0234774.       37   2.7
AM942046_1(AM942046|pid:none) Bacillus thuringiensis serovar kur...    36   3.6
CS130986_1(CS130986|pid:none) Sequence 41 from Patent WO20050663...    36   3.6
CS131018_1(CS131018|pid:none) Sequence 73 from Patent WO20050663...    36   3.6
CP000996_4(CP000996|pid:none) Borrelia recurrentis A1 plasmid pl...    36   4.7
CP000992_16(CP000992|pid:none) Borrelia duttonii Ly plasmid pl32...    36   4.7
FJ591093_30(FJ591093|pid:none) Roseophage DSS3P2, complete genome.     35   6.1
FJ950044_1(FJ950044|pid:none) HIV-1 isolate 10067ec25 from USA e...    35   6.1
CP000786_664(CP000786|pid:none) Leptospira biflexa serovar Patoc...    35   6.1
AX543968_1(AX543968|pid:none) Sequence 45 from Patent WO0234774.       35   6.1
EU255903_11(EU255903|pid:none) Lactococcus lactis subsp. lactis ...    35   8.0
EF486523_1(EF486523|pid:none) Bacillus thuringiensis strain BTH-...    35   8.0
CS714399_1(CS714399|pid:none) Sequence 5 from Patent WO2006083891.     35   8.0

>AC117075_61(AC117075|pid:none) Dictyostelium discoideum chromosome 2
            map 5201047-5455781 strain AX4, complete sequence.
          Length = 372

 Score =  684 bits (1766), Expect = 0.0
 Identities = 338/344 (98%), Positives = 338/344 (98%)
 Frame = +2

Query: 446  MEAVEKLIDHKLSQERERQCIIKFQQLQKKLAMTIFVLAEEYFSRNGNKNVSRSIIPNDI 625
            MEAVEKLIDHKLSQERERQCIIKFQQLQK      FVLAEEYFSRNGNKNVSRSIIPNDI
Sbjct: 1    MEAVEKLIDHKLSQERERQCIIKFQQLQKT-GDDYFVLAEEYFSRNGNKNVSRSIIPNDI 59

Query: 626  QVMTNEQLNSSLQFQLMMYRDKITDGLIYFKEESELINTIGFYILTASQYLCLQRDCHLY 805
            QVMTNEQLNSSLQFQLMMYRDKITDGLIYFKEESELINTIGFYILTASQYLCLQRDCHLY
Sbjct: 60   QVMTNEQLNSSLQFQLMMYRDKITDGLIYFKEESELINTIGFYILTASQYLCLQRDCHLY 119

Query: 806  GKEWGFSDFDVEDAKKKIHDYTIEFFEITVKSGWMLSRHIFREETSPIIGYYIPPYFNAV 985
            GKEWGFSDFDVEDAKKKIHDYTIEFFEITVKSGWMLSRHIFREETSPIIGYYIPPYFNAV
Sbjct: 120  GKEWGFSDFDVEDAKKKIHDYTIEFFEITVKSGWMLSRHIFREETSPIIGYYIPPYFNAV 179

Query: 986  RKFKNADFTYYPLRAFDYQRNIGEIHFNCGDERGSHLLYPGLIAGFSQVTNSLSSGFRGL 1165
            RKFKNADFTYYPLRAFDYQRNIGEIHFNCGDERGSHLLYPGLIAGFSQVTNSLSSGFRGL
Sbjct: 180  RKFKNADFTYYPLRAFDYQRNIGEIHFNCGDERGSHLLYPGLIAGFSQVTNSLSSGFRGL 239

Query: 1166 NAGNLNLQATLIVKFESIKKRSFKVKIHHHINGNATWVVESGPVSEVLSFNQGTEQEFRN 1345
            NAGNLNLQATLIVKFESIKKRSFKVKIHHHINGNATWVVESGPVSEVLSFNQGTEQEFRN
Sbjct: 240  NAGNLNLQATLIVKFESIKKRSFKVKIHHHINGNATWVVESGPVSEVLSFNQGTEQEFRN 299

Query: 1346 SYFVYNENFQNPPHATNESKLITVENEQVIFKCIRSMNGGTKTG 1477
            SYFVYNENFQNPPHATNESKLITVENEQVIFKCIRSMNGGTKTG
Sbjct: 300  SYFVYNENFQNPPHATNESKLITVENEQVIFKCIRSMNGGTKTG 343

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,445,047,526
Number of extensions: 47184646
Number of successful extensions: 117396
Number of sequences better than 10.0: 155
Number of HSP's gapped: 117346
Number of HSP's successfully gapped: 155
Length of query: 545
Length of database: 1,051,180,864
Length adjustment: 134
Effective length of query: 411
Effective length of database: 617,481,958
Effective search space: 253785084738
Effective search space used: 253785084738
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.44  gvh: 0.15  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for Contig-U15477-1 is nuc
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 14
AH (FL, L) 0
AF (FL, S) 4
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0