Contig-U15454-1
Contig ID Contig-U15454-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15454-1 (Contig-U15454-1Q) /CSM_Contig/Contig-U15454-1Q.Seq.d
CTTTTTAGCCTTAACTTTAGACCTTTGACAACCAAAATGCTTAACAAGAA
AATCATCAAACCAGCTGGTAAAGTTGCCACTGAATTCGAAAACACTGTTG
CCCAAGCATTAGTTGATTTGGAAAACAACAACGCCGAATTAAAAGACTTA
AAAGATTTATCAGTCTGTTCAGTCAAGGAAGTCGATGTTGCTGAATCCAA
AAAAGCTGTTGTCATCTTTGTTCCATTCCGTCAACTCAAAAACTACAACA
AAATCCAACAAAAATTAACCTATGAAGTTGAAAAGAAACTCGGTGGTAAA
CAAGTTATGTTCATTGCCCAAAGACGTATCATCCGTAAGCCAGCCTCAAA
CAACAAGATTAAAATGCAAAAGAGACCAATCTCCCGTACCATTAAAGCTG
TCCACGATGCTATTCTCGATGATTTAGTATTCCCAAACACTATTGTTGGT
CGTCGTTTAAGATACAGATTAGATGGTTCAAAACTCCACAAAATCTACTT
AGATCGTAAAGAAATGTTATCAAACATCTCTAAAGTTGACTCCTTCTCTG
CTGTCTACCACAAATTAACTGGTAAAGAAGTTGTCTTTGAATTCACTCAA
CAAACCGCTGAAAACTAAATAAAAAAGTAATTTTTTTAAACAAAAAAAAA
AAAA

Gap no gap
Contig length 654
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 2228037
End point 2227384
Strand (PLUS/MINUS) MINUS
Number of clones 10
Number of EST 12
Link to clone list U15454
List of clone(s)

est1=VHG254F,1,640
est2=VFJ336F,7,639
est3=VHE528F,7,638
est4=VHE528Z,7,628
est5=VHE742F,11,594
est6=VHE742Z,11,542
est7=VFL315F,13,619
est8=VSA256E,30,645
est9=SSE645E,31,642
est10=FC-AN14E,32,654
est11=VFE555Z,52,622
est12=VSC708E,479,643
Translated Amino Acid sequence
LFSLNFRPLTTKMLNKKIIKPAGKVATEFENTVAQALVDLENNNAELKDLKDLSVCSVKE
VDVAESKKAVVIFVPFRQLKNYNKIQQKLTYEVEKKLGGKQVMFIAQRRIIRKPASNNKI
KMQKRPISRTIKAVHDAILDDLVFPNTIVGRRLRYRLDGSKLHKIYLDRKEMLSNISKVD
SFSAVYHKLTGKEVVFEFTQQTAEN*ikk*ff*tkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
LFSLNFRPLTTKMLNKKIIKPAGKVATEFENTVAQALVDLENNNAELKDLKDLSVCSVKE
VDVAESKKAVVIFVPFRQLKNYNKIQQKLTYEVEKKLGGKQVMFIAQRRIIRKPASNNKI
KMQKRPISRTIKAVHDAILDDLVFPNTIVGRRLRYRLDGSKLHKIYLDRKEMLSNISKVD
SFSAVYHKLTGKEVVFEFTQQTAEN*ikk*ff*tkkkk


Frame B:
flaltldl*qpkcltrkssnqlvklplnsktllpkh*liwktttpn*kt*kiyqsvqsrk
smllnpkkllsslfhsvnsktttksnkn*pmklkrnsvvnklcslpkdvssvsqpqttrl
kckrdqspvplklstmlfsmi*ysqtlllvvv*dtd*mvqnstkst*ivkkcyqtslklt
psllsttn*lvkklslnslnkplktk*ksnffkqkkk


Frame C:
f*p*l*tfdnqna*qenhqtsw*sch*irkhccpsis*fgkqqrrikrlkrfislfsqgs
rcc*iqkscchlcsipstqklqqnptkinl*s*ketrw*tsyvhcpktyhp*aslkqqd*
naketnlpyh*scprcysr*fsipkhycwssfkiqirwfktpqnllrs*rnvikhl*s*l
llcclpqinw*rscl*ihstnr*klnkkviflnkkkk


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15454-1 (Contig-U15454-1Q)
/CSM_Contig/Contig-U15454-1Q.Seq.d
(654 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15454-1 (Contig-U15454-1Q) /CSM_Contig/Conti... 1249 0.0
Contig-U14236-1 (Contig-U14236-1Q) /CSM_Contig/Conti... 36 0.065
Contig-U16209-1 (Contig-U16209-1Q) /CSM_Contig/Conti... 34 0.26
Contig-U12014-1 (Contig-U12014-1Q) /CSM_Contig/Conti... 34 0.26
Contig-U09061-1 (Contig-U09061-1Q) /CSM_Contig/Conti... 34 0.26
Contig-U16430-1 (Contig-U16430-1Q) /CSM_Contig/Conti... 32 1.0
Contig-U15560-1 (Contig-U15560-1Q) /CSM_Contig/Conti... 32 1.0
Contig-U15414-1 (Contig-U15414-1Q) /CSM_Contig/Conti... 32 1.0
Contig-U15328-1 (Contig-U15328-1Q) /CSM_Contig/Conti... 32 1.0
Contig-U16050-1 (Contig-U16050-1Q) /CSM_Contig/Conti... 30 4.0

>Contig-U15454-1 (Contig-U15454-1Q) /CSM_Contig/Contig-U15454-1Q.Seq.d
Length = 654

Score = 1249 bits (630), Expect = 0.0
Identities = 630/630 (100%)
Strand = Plus / Plus


Query: 1 ctttttagccttaactttagacctttgacaaccaaaatgcttaacaagaaaatcatcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctttttagccttaactttagacctttgacaaccaaaatgcttaacaagaaaatcatcaaa 60


Query: 61 ccagctggtaaagttgccactgaattcgaaaacactgttgcccaagcattagttgatttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccagctggtaaagttgccactgaattcgaaaacactgttgcccaagcattagttgatttg 120


Query: 121 gaaaacaacaacgccgaattaaaagacttaaaagatttatcagtctgttcagtcaaggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaaaacaacaacgccgaattaaaagacttaaaagatttatcagtctgttcagtcaaggaa 180


Query: 181 gtcgatgttgctgaatccaaaaaagctgttgtcatctttgttccattccgtcaactcaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtcgatgttgctgaatccaaaaaagctgttgtcatctttgttccattccgtcaactcaaa 240


Query: 241 aactacaacaaaatccaacaaaaattaacctatgaagttgaaaagaaactcggtggtaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aactacaacaaaatccaacaaaaattaacctatgaagttgaaaagaaactcggtggtaaa 300


Query: 301 caagttatgttcattgcccaaagacgtatcatccgtaagccagcctcaaacaacaagatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caagttatgttcattgcccaaagacgtatcatccgtaagccagcctcaaacaacaagatt 360


Query: 361 aaaatgcaaaagagaccaatctcccgtaccattaaagctgtccacgatgctattctcgat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaaatgcaaaagagaccaatctcccgtaccattaaagctgtccacgatgctattctcgat 420


Query: 421 gatttagtattcccaaacactattgttggtcgtcgtttaagatacagattagatggttca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gatttagtattcccaaacactattgttggtcgtcgtttaagatacagattagatggttca 480


Query: 481 aaactccacaaaatctacttagatcgtaaagaaatgttatcaaacatctctaaagttgac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaactccacaaaatctacttagatcgtaaagaaatgttatcaaacatctctaaagttgac 540


Query: 541 tccttctctgctgtctaccacaaattaactggtaaagaagttgtctttgaattcactcaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tccttctctgctgtctaccacaaattaactggtaaagaagttgtctttgaattcactcaa 600


Query: 601 caaaccgctgaaaactaaataaaaaagtaa 630
||||||||||||||||||||||||||||||
Sbjct: 601 caaaccgctgaaaactaaataaaaaagtaa 630


>Contig-U14236-1 (Contig-U14236-1Q) /CSM_Contig/Contig-U14236-1Q.Seq.d
Length = 660

Score = 36.2 bits (18), Expect = 0.065
Identities = 21/22 (95%)
Strand = Plus / Plus


Query: 35 aaatgcttaacaagaaaatcat 56
|||||||||| |||||||||||
Sbjct: 377 aaatgcttaaaaagaaaatcat 398


>Contig-U16209-1 (Contig-U16209-1Q) /CSM_Contig/Contig-U16209-1Q.Seq.d
Length = 1944

Score = 34.2 bits (17), Expect = 0.26
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 587 ttgaattcactcaacaa 603
|||||||||||||||||
Sbjct: 1814 ttgaattcactcaacaa 1830


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9255
Number of Sequences: 8402
Number of extensions: 9255
Number of successful extensions: 783
Number of sequences better than 10.0: 70
length of query: 654
length of database: 8,075,542
effective HSP length: 16
effective length of query: 638
effective length of database: 7,941,110
effective search space: 5066428180
effective search space used: 5066428180
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.27
Homology vs DNA
Query= Contig-U15454-1 (Contig-U15454-1Q) /CSM_Contig/Contig-U15454-1Q.Seq.d
(654 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ420751) Dictyostelium discoideum cDNA clone:ddv40g07, 5' ... 1197 0.0 1
(BJ421729) Dictyostelium discoideum cDNA clone:ddv43k14, 5' ... 1193 0.0 1
(BJ415628) Dictyostelium discoideum cDNA clone:ddv23n03, 5' ... 1185 0.0 1
(AU261383) Dictyostelium discoideum vegetative cDNA clone:VS... 1152 0.0 1
(BJ420742) Dictyostelium discoideum cDNA clone:ddv40d11, 5' ... 1150 0.0 1
(C22928) Dictyostelium discoideum gamete cDNA, clone FC-AN14. 1148 0.0 1
(BJ439396) Dictyostelium discoideum cDNA clone:ddv40g07, 3' ... 1148 0.0 1
(BJ414487) Dictyostelium discoideum cDNA clone:ddv19h09, 5' ... 1100 0.0 2
(BJ428073) Dictyostelium discoideum cDNA clone:ddv10m13, 3' ... 1051 0.0 2
(BJ439384) Dictyostelium discoideum cDNA clone:ddv40d11, 3' ... 1021 0.0 1
(C92363) Dictyostelium discoideum slug cDNA, clone SSE645. 783 0.0 2
(AU072474) Dictyostelium discoideum slug cDNA, clone SSE645. 345 e-126 2
(AU262740) Dictyostelium discoideum vegetative cDNA clone:VS... 264 4e-66 1
(EC760587) PSE00001353 rw_mgpallid Polysphondylium pallidum ... 56 2e-19 3
(EC762813) PSE00002741 rw_mgpallid Polysphondylium pallidum ... 56 2e-19 3
(AU266424) Dictyostelium discoideum vegetative cDNA clone:VS... 78 5e-10 1
(EC760569) PSE00006989 rw_mgpallid Polysphondylium pallidum ... 52 4e-09 2
(EC744550) PSE00004491 rw_mgpallid Polysphondylium pallidum ... 58 4e-04 1
(EF145722) Populus trichocarpa clone WS0112_P04 unknown mRNA. 56 0.002 1
(CU224148) Populus EST from leave. 56 0.002 1
(DT526487) WS02048.C21_C19 PTxN-IB-N-A-11 Populus trichocarp... 56 0.002 1
(DT524208) WS02041.C21.1_O19 PTxN-IB-N-A-11 Populus trichoca... 56 0.002 1
(DT523406) WS02039.B21_J20 PTxN-IB-N-A-11 Populus trichocarp... 56 0.002 1
(DT507917) WS02419.BR_J02 PTxD-ICC-N-A-14 Populus trichocarp... 56 0.002 1
(DT505464) WS01810.C21_P23 PTxD-IL-N-A-9 Populus trichocarpa... 56 0.002 1
(DT502610) WS0133.BR_J12 PTxD-IL-FL-A-4 Populus trichocarpa ... 56 0.002 1
(DT499530) WS0118.BR_J02 PT-P-FL-A-2 Populus trichocarpa cDN... 56 0.002 1
(DT495269) WS0112.BR_P04 PT-P-FL-A-2 Populus trichocarpa cDN... 56 0.002 1
(DN496825) Q020C04.5pR Populus dormant bud cDNA library Popu... 56 0.002 1
(DN487214) Q020C04.3pR Populus dormant bud cDNA library Popu... 56 0.002 1
(DB891923) Populus nigra mRNA, clone: PnFL2-097_P03, 5'end. 56 0.002 1
(CX657902) PO01006G07 Poplar SC cDNA library Populus alba x ... 56 0.002 1
(CX184770) E11_45-81_09.ab1 leaf inoculated with Marssonia p... 56 0.002 1
(CX182484) C04_45-56_06.ab1 leaf inoculated with Marssonia p... 56 0.002 1
(CV265337) WS02026.B21_P15 PTxN-IB-N-A-11 Populus trichocarp... 56 0.002 1
(CV248240) WS0112.B21_P04 PT-P-FL-A-2 Populus trichocarpa cD... 56 0.002 1
(CV243384) WS02518.B21_L14 PT-MB-N-A-15 Populus trichocarpa ... 56 0.002 1
(CV233928) WS01212.B21_O19 PT-GT-FL-A-3 Populus trichocarpa ... 56 0.002 1
(AJ646157) Populus tremula x P. tremuloides/Amanita muscaria... 56 0.002 1
(CF231280) PtaC0019E6E0610 Poplar cDNA library from cambial ... 56 0.002 1
(CB833317) R01C12 two-month-old roots from clone 'Beaupre' P... 56 0.002 1
(CA929873) MTU2CA.P3.H06 Aspen apex cDNA Library Populus tre... 56 0.002 1
(CA929744) MTU2CA.P2.B05 Aspen apex cDNA Library Populus tre... 56 0.002 1
(CA929228) MTU2CA.P10.G09 Aspen apex cDNA Library Populus tr... 56 0.002 1
(CA928492) MTU6TR.P3.C11 Aspen root cDNA Library Populus tre... 56 0.002 1
(CA928477) MTU6TR.P3.B08 Aspen root cDNA Library Populus tre... 56 0.002 1
(CA928286) MTU6TR.P18.H02 Aspen root cDNA Library Populus tr... 56 0.002 1
(CA928062) MTU6TR.P16.C12 Aspen root cDNA Library Populus tr... 56 0.002 1
(CA928005) MTU6TR.P15.F04 Aspen root cDNA Library Populus tr... 56 0.002 1
(CA924222) MTU7CL.P3.C02 Aspen leaf cDNA Library Populus tre... 56 0.002 1
(CA825586) R62A06 two-month-old roots from clone 'Beaupre' P... 56 0.002 1
(CA823832) R32A08 two-month-old roots from clone 'Beaupre' P... 56 0.002 1
(CA822178) R04F08 two-month-old roots from clone 'Beaupre' P... 56 0.002 1
(CA821993) R02D11 two-month-old roots from clone 'Beaupre' P... 56 0.002 1
(BU887670) R065A01 Populus root cDNA library Populus tremula... 56 0.002 1
(BU885277) R028H07 Populus root cDNA library Populus tremula... 56 0.002 1
(BU883026) UM85TD07 Populus flower cDNA library Populus tric... 56 0.002 1
(BU881533) UM64TA03 Populus flower cDNA library Populus tric... 56 0.002 1
(BU880346) UM44TG04 Populus flower cDNA library Populus tric... 56 0.002 1
(BU879517) V061B12 Populus flower cDNA library Populus trich... 56 0.002 1
(BU875644) V009E09 Populus flower cDNA library Populus trich... 56 0.002 1
(BU864646) S043C06 Populus imbibed seed cDNA library Populus... 56 0.002 1
(BU861591) S004A09 Populus imbibed seed cDNA library Populus... 56 0.002 1
(BU833430) T047H09 Populus apical shoot cDNA library Populus... 56 0.002 1
(BU822746) UB42BPH04 Populus tremula cambium cDNA library Po... 56 0.002 1
(BU816833) N071H07 Populus bark cDNA library Populus tremula... 56 0.002 1
(BU815796) N046G02 Populus bark cDNA library Populus tremula... 56 0.002 1
(AI164364) A060P79U Hybrid aspen plasmid library Populus tre... 56 0.002 1
(BI138580) F109P53Y Populus flower cDNA library Populus tric... 56 0.002 1
(BI130017) G099P07Y Populus cambium cDNA library Populus tre... 56 0.002 1
(EH235033) JGI_ACAC8785.fwd ACAC Phakopsora pachyrhizi TW72-... 38 0.002 4
(EH231132) JGI_ACAC8785.rev ACAC Phakopsora pachyrhizi TW72-... 38 0.002 4
(EF145519) Populus trichocarpa clone WS01125_J22 unknown mRNA. 54 0.007 1
(DT497147) WS01125.BR_J22 PT-P-FL-A-2 Populus trichocarpa cD... 54 0.007 1
(CA928607) MTU6TR.P4.F07 Aspen root cDNA Library Populus tre... 54 0.007 1
(AY130377) Scyliorhinus canicula ribosomal protein S7 mRNA, ... 40 0.012 2
(EC760370) PSE00002242 rw_mgpallid Polysphondylium pallidum ... 52 0.026 1
(EC745911) PSE00006957 rw_mgpallid Polysphondylium pallidum ... 52 0.026 1
(EC745434) PSE00003166 rw_mgpallid Polysphondylium pallidum ... 52 0.026 1
(EC744236) PSE00001920 rw_mgpallid Polysphondylium pallidum ... 52 0.026 1
(AI163106) A032P63U Hybrid aspen plasmid library Populus tre... 50 0.10 1
(EE001786) ROE00013441 Rhizopus oryzae Company Rhizopus oryz... 38 0.17 2
(EE004253) ROE00013345 Rhizopus oryzae Company Rhizopus oryz... 38 0.18 2
(EE007925) ROE00003654 Rhizopus oryzae Company Rhizopus oryz... 38 0.21 2
(AC008692) Homo sapiens chromosome 5 clone CTB-65N22, comple... 48 0.41 1
(AC091837) Homo sapiens chromosome 5 clone CTD-2105A1, WORKI... 48 0.41 1
(AC018996) Homo sapiens clone RP11-659I4, WORKING DRAFT SEQU... 48 0.41 1
(DV556217) DC05031H07 Panax ginseng cDNA library Panax ginse... 48 0.41 1
(FE450689) CAOS15475.fwd CAOS Selaginella moellendorffii mix... 48 0.41 1
(FE450688) CAOS15475.rev CAOS Selaginella moellendorffii mix... 48 0.41 1
(CU024872) Zebrafish DNA sequence from clone DKEY-58J5 in li... 34 0.47 5
(GD254790) ZYta097 Young leaves cDNA library of tea plant (C... 38 1.0 2
(GD254791) ZYta098 Young leaves cDNA library of tea plant (C... 38 1.0 2
(ER481406) 1093015265402 Global-Ocean-Sampling_GS-35-01-01-1... 44 1.0 2
(BP192119) Dugesia japonica cDNA, clone: EYE_0067, expressed... 34 1.6 2
(EH431365) NPE00000621 Neocallimastix patriciarum ZAP II cDN... 46 1.6 1
(DN910295) Cuc4_4_D09 Cucumber fruit development cDNA librar... 46 1.6 1
(AM739074) Cucumis melo subsp. melo EST, clone 15d_40-C06-M13R. 46 1.6 1
(AM738844) Cucumis melo subsp. melo EST, clone 15d_24-A12-M13R. 46 1.6 1
(AM736606) Cucumis melo subsp. melo EST, clone 15d_15-B02-M13R. 46 1.6 1
(AM726335) Cucumis melo subsp. melo EST, clone HS_17-E04-M13R. 46 1.6 1
(AM726135) Cucumis melo subsp. melo EST, clone HS_28-E05-M13R. 46 1.6 1
(AM725641) Cucumis melo subsp. melo EST, clone HS_09-E06-M13R. 46 1.6 1
(AM725479) Cucumis melo subsp. melo EST, clone HS_38-E01-M13R. 46 1.6 1
(AM724758) Cucumis melo subsp. melo EST, clone HS_31-B05-M13R. 46 1.6 1
(AM723924) Cucumis melo subsp. melo EST, clone HS_39-H02-M13R. 46 1.6 1
(AM720566) Cucumis melo subsp. melo EST, clone PSI_19-G12-M13R. 46 1.6 1
(AM719193) Cucumis melo subsp. melo EST, clone PS_06-F09-M13R. 46 1.6 1
(AM716436) Cucumis melo subsp. agrestis EST, clone AI_04-G12... 46 1.6 1
(AM714813) Cucumis melo subsp. agrestis EST, clone AI_28-D02... 46 1.6 1
(CO998610) csa01-3ms1-f05 Csa01 Cucumis sativus cDNA clone c... 46 1.6 1
(CK764729) csa01-2ms3-g04 Csa01 Cucumis sativus cDNA clone c... 46 1.6 1
(CK700721) EST0008 Cucumber Young Fruit cDNA Lambda TriplEx ... 46 1.6 1
(CK085730) RG6_G09 Cucumber leaf Cucumis sativus cDNA, mRNA ... 46 1.6 1
(EB144417) 011003ABDA006799HT (ABDA) Royal Gala fruit stored... 42 2.5 2
(CQ972465) Sequence 208 from Patent EP1491639. 42 2.6 2
(EB136505) 010613AAXA006952HT (AAXA) Royal Gala 126 DAFB fru... 42 2.6 2
(EB141531) 010813AASB005739HT (AASB) Royal Gala 10 DAFB frui... 42 2.7 2
(EB125400) 010425AASA006958HT (AASA) Royal Gala 10 DAFB frui... 42 2.9 2
(EB151319) 030203ABPB003896HT (ABPB) M9 root tips Malus x do... 42 2.9 2
(DT002504) Mdrta1014L17.g1 Apple_EST_Mdrta Malus x domestica... 42 3.3 2
(CO486604) GQ0209.TB_N22 GQ020: Clean ROOTS systems -Diurnal... 38 3.5 2
(CO486591) GQ0209.B7_N22 GQ020: Clean ROOTS systems -Diurnal... 38 3.7 2
(AM484445) Vitis vinifera contig VV78X158991.42, whole genom... 38 4.9 2
(AX344790) Sequence 215 from Patent WO0200927. 44 6.4 1
(AC121066) Oryctolagus cuniculus strain New Zealand White cl... 44 6.4 1
(AL359373) Human DNA sequence from clone RP11-5L19 on chromo... 44 6.4 1
(AL356115) Human DNA sequence from clone RP11-486O22 on chro... 44 6.4 1
(AC074321) Homo sapiens chromosome 10 clone RP11-122F14, com... 44 6.4 1
(AC140824) Homo sapiens chromosome 5 clone RP11-813H11, WORK... 44 6.4 1
(AC046146) Mus musculus chromosome 12 clone RP23-321N21, ***... 44 6.4 1
(AC222340) Bos taurus clone CH240-415G5, WORKING DRAFT SEQUE... 44 6.4 1
(AC176098) Strongylocentrotus purpuratus clone R3-24E23, WOR... 44 6.4 1
(AC168471) Strongylocentrotus purpuratus clone R3-35A16, WOR... 44 6.4 1
(AC023953) Homo sapiens chromosome 15 clone RP11-112M7 map 1... 44 6.4 1
(BH186180) 028_P_06-21 SmBAC1 Schistosoma mansoni genomic cl... 44 6.4 1
(AL623128) T7 end of clone 028DH03 of library SmBAC1 from st... 44 6.4 1
(DH284599) Oryzias latipes Fosmid clone:GOLWFno625_h05, reve... 44 6.4 1
(CR897718) Sus scrofa BES. 44 6.4 1
(CE578468) tigr-gss-dog-17000366220971 Dog Library Canis lup... 44 6.4 1
(DW072489) CLLZ3920.b1_O19.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1
(DW071445) CLLZ2844.b1_H15.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1
(DW069725) CLLY9542.b1_L10.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1
(DW069517) CLLY9330.b1_D05.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1
(DW067015) CLLY6492.b1_H16.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1
(DW066692) CLLY6192.b1_O11.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1
(DW066245) CLLY5778.b1_C05.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1
(DW057360) CLLX9956.b1_H18.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1
(DW057214) CLLX9801.b1_A04.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1
(DW057139) CLLX9721.b1_B07.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1
(DW056702) CLLX9262.b1_K11.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1
(DW054418) CLLX6990.b1_K19.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1
(DW054047) CLLX6641.b1_B05.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1
(DW053517) CLLX6146.b1_C01.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1
(DW053165) CLLX5816.b2_O13.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1
(DW053086) CLLX574.b1_L23.ab1 CLL(XYZ) lettuce saligna Lactu... 44 6.4 1
(DW051698) CLLX4452.b1_G10.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1
(DW051527) CLLX4295.b1_M17.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1
(DW051197) CLLX3983.b1_N11.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1
(DW050894) CLLX3684.b1_G10.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1
(DW050843) CLLX3631.b1_N19.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1
(DW049849) CLLX2619.b1_F08.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1
(DW049641) CLLX2407.b1_N01.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1
(DW049595) CLLX2360.b1_O13.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1
(DW049182) CLLX1936.b1_O03.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1
(DW048498) CLLX15089.b2_B05.ab1 CLL(XYZ) lettuce saligna Lac... 44 6.4 1
(DW045872) CLLX12623.b1_N12.ab1 CLL(XYZ) lettuce saligna Lac... 44 6.4 1
(DW045531) CLLX12309.b1_I05.ab1 CLL(XYZ) lettuce saligna Lac... 44 6.4 1
(DW045515) CLLX12294.b1_K01.ab1 CLL(XYZ) lettuce saligna Lac... 44 6.4 1
(DW044612) CLLX11440.b2_P04.ab1 CLL(XYZ) lettuce saligna Lac... 44 6.4 1
(DV182598) CT010_A12_CT010_3700_91.ab1 C. tentans tissue cul... 44 6.4 1
(CX655408) PO02034D11 Poplar SC cDNA library Populus alba x ... 44 6.4 1
(BE144605) PM0-HT0171-290999-001-g08 HT0171 Homo sapiens cDN... 44 6.4 1
(BE144598) PM0-HT0171-290999-001-d09 HT0171 Homo sapiens cDN... 44 6.4 1
(CU075906) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 7.0 2
(CN445686) Mdfw2003h02.y1 Mdfw Malus x domestica cDNA clone ... 38 8.2 2
(AM442712) Vitis vinifera contig VV78X087547.4, whole genome... 38 9.8 2

>(BJ420751) Dictyostelium discoideum cDNA clone:ddv40g07, 5' end,
single read.
Length = 632

Score = 1197 bits (604), Expect = 0.0
Identities = 604/604 (100%)
Strand = Plus / Plus


Query: 7 agccttaactttagacctttgacaaccaaaatgcttaacaagaaaatcatcaaaccagct 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agccttaactttagacctttgacaaccaaaatgcttaacaagaaaatcatcaaaccagct 60


Query: 67 ggtaaagttgccactgaattcgaaaacactgttgcccaagcattagttgatttggaaaac 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtaaagttgccactgaattcgaaaacactgttgcccaagcattagttgatttggaaaac 120


Query: 127 aacaacgccgaattaaaagacttaaaagatttatcagtctgttcagtcaaggaagtcgat 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aacaacgccgaattaaaagacttaaaagatttatcagtctgttcagtcaaggaagtcgat 180


Query: 187 gttgctgaatccaaaaaagctgttgtcatctttgttccattccgtcaactcaaaaactac 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gttgctgaatccaaaaaagctgttgtcatctttgttccattccgtcaactcaaaaactac 240


Query: 247 aacaaaatccaacaaaaattaacctatgaagttgaaaagaaactcggtggtaaacaagtt 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aacaaaatccaacaaaaattaacctatgaagttgaaaagaaactcggtggtaaacaagtt 300


Query: 307 atgttcattgcccaaagacgtatcatccgtaagccagcctcaaacaacaagattaaaatg 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atgttcattgcccaaagacgtatcatccgtaagccagcctcaaacaacaagattaaaatg 360


Query: 367 caaaagagaccaatctcccgtaccattaaagctgtccacgatgctattctcgatgattta 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 caaaagagaccaatctcccgtaccattaaagctgtccacgatgctattctcgatgattta 420


Query: 427 gtattcccaaacactattgttggtcgtcgtttaagatacagattagatggttcaaaactc 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtattcccaaacactattgttggtcgtcgtttaagatacagattagatggttcaaaactc 480


Query: 487 cacaaaatctacttagatcgtaaagaaatgttatcaaacatctctaaagttgactccttc 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cacaaaatctacttagatcgtaaagaaatgttatcaaacatctctaaagttgactccttc 540


Query: 547 tctgctgtctaccacaaattaactggtaaagaagttgtctttgaattcactcaacaaacc 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tctgctgtctaccacaaattaactggtaaagaagttgtctttgaattcactcaacaaacc 600


Query: 607 gctg 610
||||
Sbjct: 601 gctg 604

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 711,698,860
Number of extensions: 40002482
Number of successful extensions: 3021828
Number of sequences better than 10.0: 177
Length of query: 654
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 630
Effective length of database: 96,409,374,237
Effective search space: 60737905769310
Effective search space used: 60737905769310
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.16
Homology vs Protein
Query= Contig-U15454-1 (Contig-U15454-1Q) /CSM_Contig/Contig-U15454-1Q.Seq.d
(654 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

BT043659_1(BT043659|pid:none) Salmo salar clone HM5_1216 ribosom... 194 1e-48
DQ213527_1(DQ213527|pid:none) Taeniopygia guttata clone 0062P000... 193 3e-48
BT047492_1(BT047492|pid:none) Salmo salar clone ssal-evd-527-178... 193 3e-48
AB291560_1(AB291560|pid:none) Solea senegalensis rpS7 mRNA for r... 193 3e-48
BT046967_1(BT046967|pid:none) Salmo salar clone ssal-eve-546-053... 191 1e-47
BT047187_1(BT047187|pid:none) Salmo salar clone ssal-eve-560-334... 191 2e-47
(A6H769) RecName: Full=40S ribosomal protein S7; &(P62081) RecN... 191 2e-47
AY892194_1(AY892194|pid:none) Synthetic construct Homo sapiens c... 191 2e-47
(P50894) RecName: Full=40S ribosomal protein S7; &X94942_1(X949... 190 3e-47
AF526221_1(AF526221|pid:none) Argopecten irradians isolate iolsa... 189 5e-47
EU073713_1(EU073713|pid:none) Perca flavescens 40s ribosomal pro... 189 5e-47
EF145722_1(EF145722|pid:none) Populus trichocarpa clone WS0112_P... 189 8e-47
EF031056_1(EF031056|pid:none) Branchiostoma belcheri ribosomal p... 188 1e-46
EU558295_1(EU558295|pid:none) Novocrania anomala putative 40S ri... 188 1e-46
EF146872_1(EF146872|pid:none) Populus trichocarpa clone WS0121_F... 188 1e-46
AY130452_1(AY130452|pid:none) Petromyzon marinus ribosomal prote... 188 1e-46
AM159218_1(AM159218|pid:none) Oncorhynchus mykiss mRNA for 40S r... 187 2e-46
EF145519_1(EF145519|pid:none) Populus trichocarpa clone WS01125_... 187 3e-46
EF146088_1(EF146088|pid:none) Populus trichocarpa clone WS0115_H... 186 4e-46
EU284933_1(EU284933|pid:none) TSA: Elaeis guineensis EgEfMPOB001... 185 1e-45
EU302570_1(EU302570|pid:none) Lineus viridis ribosomal protein r... 185 1e-45
EU124935_1(EU124935|pid:none) Arenicola marina ribosomal protein... 184 2e-45
AY846832_1(AY846832|pid:none) Triticum aestivum ribosomal protei... 183 3e-45
(Q9ZNS1) RecName: Full=40S ribosomal protein S7; &AF056316_1(AF... 182 7e-45
AY130377_1(AY130377|pid:none) Scyliorhinus canicula ribosomal pr... 182 7e-45
BT051295_1(BT051295|pid:none) Medicago truncatula clone MTYF1_F2... 182 1e-44
AM438341_1(AM438341|pid:none) Vitis vinifera contig VV78X277767.... 181 1e-44
AE016816_130(AE016816|pid:none) Ashbya gossypii (= Eremothecium ... 180 4e-44
(Q9XET4) RecName: Full=40S ribosomal protein S7; &AF118149_1(AF... 179 5e-44
V01442_1(V01442|pid:none) Fragment of Xenopus laevis mRNA for ri... 179 5e-44
EU045348_1(EU045348|pid:none) Phlebotomus papatasi 40S ribosomal... 179 5e-44
EU558337_1(EU558337|pid:none) Phoronis muelleri putative 40S rib... 179 5e-44
AY389951_1(AY389951|pid:none) Latimeria chalumnae ribosomal prot... 179 8e-44
CR382123_585(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 177 2e-43
(Q8LJU5) RecName: Full=40S ribosomal protein S7; &AC134927_13(A... 177 2e-43
AK059192_1(AK059192|pid:none) Oryza sativa Japonica Group cDNA c... 177 3e-43
AY389952_1(AY389952|pid:none) Protopterus dolloi ribosomal prote... 177 3e-43
EU247173_1(EU247173|pid:none) Lycosa singoriensis clone LSsin939... 176 4e-43
(Q949H0) RecName: Full=40S ribosomal protein S7; &AJ315794_1(AJ... 176 5e-43
EU139174_1(EU139174|pid:none) Flustra foliacea putative 40S ribo... 176 7e-43
AF529175_1(AF529175|pid:none) Oryza sativa (japonica cultivar-gr... 176 7e-43
EU952242_1(EU952242|pid:none) Zea mays clone 1272428 40S ribosom... 175 9e-43
DQ415922_44(DQ415922|pid:none) Cleome spinosa clone BAC Cs1, com... 175 9e-43
CR380953_273(CR380953|pid:none) Candida glabrata strain CBS138 c... 175 9e-43
BT071410_1(BT071410|pid:none) Picea sitchensis clone WS0288_I22 ... 175 1e-42
(Q23312) RecName: Full=40S ribosomal protein S7; &T27565(T27565... 174 2e-42
AY857464_1(AY857464|pid:none) Suberites domuncula S7 mRNA, compl... 174 2e-42
(P48164) RecName: Full=40S ribosomal protein S7-B; &S52729(S527... 174 2e-42
AE017349_108(AE017349|pid:none) Cryptococcus neoformans var. neo... 174 2e-42
AJ783760_1(AJ783760|pid:none) Papilio dardanus mRNA for ribosoma... 173 3e-42
(Q9XH45) RecName: Full=40S ribosomal protein S7; &AF144752_1(AF... 172 6e-42
(Q9VA91) RecName: Full=40S ribosomal protein S7; &AE014297_4746... 172 6e-42
EU116881_1(EU116881|pid:none) Sipunculus nudus putative ribosoma... 172 8e-42
DQ415921_36(DQ415921|pid:none) Cleome spinosa clone BAC Cs2, com... 171 1e-41
(Q10101) RecName: Full=40S ribosomal protein S7; &CU329670_924(... 171 1e-41
X94335_15(X94335|pid:none) S.cerevisiae 130kb DNA fragment from ... 171 1e-41
DQ137845_1(DQ137845|pid:none) Galleria mellonella ribosomal prot... 171 1e-41
AY232053_1(AY232053|pid:none) Drosophila yakuba clone yak-ad_CG1... 171 2e-41
AM048934_1(AM048934|pid:none) Sphaerius sp. APV-2005 mRNA for ri... 171 2e-41
(P62085) RecName: Full=40S ribosomal protein S7; &AY231915_1(AY... 171 2e-41
AY130375_1(AY130375|pid:none) Branchiostoma lanceolatum ribosoma... 171 2e-41
EU285016_1(EU285016|pid:none) TSA: Elaeis guineensis EgEfMPOB002... 170 3e-41
AB180420_1(AB180420|pid:none) Plutella xylostella mRNA for Ribos... 170 3e-41
CP000589_291(CP000589|pid:none) Ostreococcus lucimarinus CCE9901... 170 4e-41
DQ115393_8(DQ115393|pid:none) Saccharomyces cerevisiae Pol1p (PO... 170 4e-41
(Q962S0) RecName: Full=40S ribosomal protein S7; &AF400206_1(AF... 169 5e-41
BT077316_1(BT077316|pid:none) Caligus rogercresseyi clone crog-e... 169 7e-41
(Q8LD03) RecName: Full=40S ribosomal protein S7-3; &AK227242_1(... 168 1e-40
T46586(T46586) ribosomal protein [imported] - Neurospora crassa ... 167 2e-40
AM270014_10(AM270014|pid:none) Aspergillus niger contig An02c019... 167 3e-40
AK340562_1(AK340562|pid:none) Acyrthosiphon pisum ACYPI010042 mR... 167 3e-40
AF469180_1(AF469180|pid:none) Chelydra serpentina serpentina rib... 166 7e-40
AM920433_61(AM920433|pid:none) Penicillium chrysogenum Wisconsin... 165 9e-40
AK341557_1(AK341557|pid:none) Acyrthosiphon pisum ACYPI010164 mR... 165 1e-39
AY380336_1(AY380336|pid:none) Aedes aegypti S7 ribosomal protein... 165 1e-39
AY369135_1(AY369135|pid:none) Anopheles dirus ribosomal protein ... 164 3e-39
(P33514) RecName: Full=40S ribosomal protein S7; 163 4e-39
DQ363670_1(DQ363670|pid:none) Streblomastix strix small subunit ... 163 5e-39
DQ377970_1(DQ377970|pid:none) Populus x canadensis putative 40S ... 162 1e-38
CR382133_384(CR382133|pid:none) Debaryomyces hansenii strain CBS... 162 1e-38
AF539918_1(AF539918|pid:none) Anopheles stephensi ribosomal prot... 162 1e-38
EF070600_1(EF070600|pid:none) Maconellicoccus hirsutus clone WHM... 161 1e-38
FN392322_205(FN392322|pid:none) Pichia pastoris GS115 chromosome... 161 1e-38
CU633900_50(CU633900|pid:none) Podospora anserina genomic DNA ch... 161 2e-38
L20837_1(L20837|pid:none) Anopheles gambiae ribosomal protein S7... 159 7e-38
CR382127_343(CR382127|pid:none) Yarrowia lipolytica strain CLIB1... 159 9e-38
AF369932_1(AF369932|pid:none) Anopheles dirus ribosomal protein ... 156 6e-37
EU976929_1(EU976929|pid:none) Zea mays clone 994126 unknown mRNA. 148 1e-34
AY880426_1(AY880426|pid:none) Gekko japonicus GekBS195P mRNA, co... 146 5e-34
EZ000607_1(EZ000607|pid:none) TSA: Culex tarsalis Ctar-792 40S r... 146 6e-34
AE014297_4749(AE014297|pid:none) Drosophila melanogaster chromos... 145 8e-34
FN323553_1(FN323553|pid:none) Schistosoma japonicum isolate Anhu... 145 1e-33
AY223126_1(AY223126|pid:none) Schistosoma japonicum SJCHGC02314 ... 144 2e-33
AM980966_1(AM980966|pid:none) Echinorhynchus truttae partial mRN... 141 2e-32
BT035492_1(BT035492|pid:none) Zea mays full-length cDNA clone ZM... 136 5e-31
FN323571_1(FN323571|pid:none) Schistosoma japonicum isolate Anhu... 129 7e-29
AM494938_46(AM494938|pid:none) Leishmania braziliensis chromosom... 122 9e-27
AM494938_47(AM494938|pid:none) Leishmania braziliensis chromosom... 122 9e-27
CR940353_773(CR940353|pid:none) Theileria annulata strain Ankara... 120 5e-26
AM502219_43(AM502219|pid:none) Leishmania infantum chromosome 1.... 119 1e-25
AM849487_1(AM849487|pid:none) Pomphorhynchus laevis partial mRNA... 117 2e-25
FN323545_1(FN323545|pid:none) Schistosoma japonicum isolate Anhu... 116 5e-25
AM910996_13(AM910996|pid:none) Plasmodium knowlesi strain H chro... 108 1e-22
AL844509_28(AL844509|pid:none) Plasmodium falciparum 3D7 chromos... 107 2e-22
EF450776_1(EF450776|pid:none) Anopheles funestus Rps7 (rps7) mRN... 101 2e-20
EF608937_1(EF608937|pid:none) Paeonia suffruticosa clone 9 hypot... 96 9e-19
EU952224_1(EU952224|pid:none) Zea mays clone 1230917 unknown mRNA. 91 2e-17
AB209386_1(AB209386|pid:none) Homo sapiens mRNA for ribosomal pr... 66 8e-10
AP008208_1120(AP008208|pid:none) Oryza sativa (japonica cultivar... 63 9e-09
DQ875215_1(DQ875215|pid:none) Helicoverpa armigera ribosomal pro... 58 3e-07
BT069829_1(BT069829|pid:none) Zea mays full-length cDNA clone ZM... 56 1e-06
EU441558_1(EU441558|pid:none) Xenopus borealis clone Rps8.a ribo... 49 1e-04
AM450497_1(AM450497|pid:none) Vitis vinifera contig VV78X060270.... 48 3e-04
AF543540_1(AF543540|pid:none) Oncorhynchus mykiss 40S ribosomal ... 47 4e-04
(P47839) RecName: Full=40S ribosomal protein S7; Flags: Fragment... 40 0.046
CP000111_1243(CP000111|pid:none) Prochlorococcus marinus str. MI... 37 0.39
AL035477_2(AL035477|pid:none) Plasmodium falciparum MAL4P4. &AL... 35 1.9
EF608934_1(EF608934|pid:none) Paeonia suffruticosa clone 6 40S r... 35 1.9
CP001158_344(CP001158|pid:none) Buchnera aphidicola str. Tuc7 (A... 34 4.3
AF141968_1(AF141968|pid:none) Homo sapiens trabeculin-alpha mRNA... 34 4.3
CP001230_1665(CP001230|pid:none) Persephonella marina EX-H1, com... 34 4.3
CP000084_745(CP000084|pid:none) Candidatus Pelagibacter ubique H... 33 5.6
CP000923_454(CP000923|pid:none) Thermoanaerobacter sp. X514, com... 33 5.6
CR382129_192(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 33 5.6
CP000924_1729(CP000924|pid:none) Thermoanaerobacter pseudethanol... 33 5.6
AL137853_2(AL137853|pid:none) Human DNA sequence from clone RP4-... 33 7.3
FN392322_187(FN392322|pid:none) Pichia pastoris GS115 chromosome... 33 7.3
AF325341_1(AF325341|pid:none) Homo sapiens macrophin 1 isoforms ... 33 7.3
(A1D688) RecName: Full=Nucleolar protein 58; 33 7.3
(Q96PK2) RecName: Full=Microtubule-actin cross-linking factor 1,... 33 7.3
AC152407_16(AC152407|pid:none) Medicago truncatula clone mth2-77... 33 7.3
AB033077_1(AB033077|pid:none) Homo sapiens mRNA for KIAA1251 pro... 33 7.3
AB291549_1(AB291549|pid:none) Thunnus thynnus S7RP gene for S7 r... 33 7.3
EF082890_1(EF082890|pid:none) Picea sitchensis clone WS02728_H04... 33 7.3
FM992690_657(FM992690|pid:none) Candida dubliniensis CD36 chromo... 33 9.5
EF084610_1(EF084610|pid:none) Picea sitchensis clone WS02714_H13... 33 9.5
(P0C5Y8) RecName: Full=Alsin; AltName: Full=Amyotrophic lateral ... 33 9.5
AL844509_211(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 33 9.5
CP001078_2265(CP001078|pid:none) Clostridium botulinum E3 str. A... 33 9.5
AJ223860_1(AJ223860|pid:none) Leishmania major histone H1 gene, ... 33 9.5
FM992688_983(FM992688|pid:none) Candida dubliniensis CD36 chromo... 33 9.5

>BT043659_1(BT043659|pid:none) Salmo salar clone HM5_1216 ribosomal
protein S7 (rps7) mRNA, complete cds.
&BT045902_1(BT045902|pid:none)
&BT046513_1(BT046513|pid:none)
&BT073788_1(BT073788|pid:none)
Length = 194

Score = 194 bits (494), Expect = 1e-48
Identities = 97/185 (52%), Positives = 140/185 (75%), Gaps = 1/185 (0%)
Frame = +1

Query: 49 KIIKPAGKVATEFENTVAQALVDLENNNAELKDLKDLSVCSVKEVDVAESKKAVVIFVPF 228
KI+KP G+ EFE+ ++QAL++LE N+ L++L++ + KE++V S+KA++IFVP
Sbjct: 7 KIVKPNGEKPDEFESGISQALLELEMNSDMKAQLRELNITAAKEIEVGGSRKAIIIFVPV 66

Query: 229 RQLKNYNKIQQKLTYEVEKKLGGKQVMFIAQRRIIRKPASNNKIK-MQKRPISRTIKAVH 405
QLK++ KIQ +L E+EKK GK V+F+AQRRI+ KP ++IK QKRP SRT+ AVH
Sbjct: 67 PQLKSFQKIQVRLVRELEKKFSGKHVVFVAQRRILPKPTRKSRIKNKQKRPRSRTLTAVH 126

Query: 406 DAILDDLVFPNTIVGRRLRYRLDGSKLHKIYLDRKEMLSNISKVDSFSAVYHKLTGKEVV 585
DAIL+DLVFP+ IVG+R+R +LD S+L K++LD+ + + KV++FS VY KLTGK+VV
Sbjct: 127 DAILEDLVFPSEIVGKRIRVKLDSSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVV 186

Query: 586 FEFTQ 600
FEF +
Sbjct: 187 FEFPE 191

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 964,378,337
Number of extensions: 17658646
Number of successful extensions: 53841
Number of sequences better than 10.0: 141
Number of HSP's gapped: 53631
Number of HSP's successfully gapped: 141
Length of query: 218
Length of database: 1,051,180,864
Length adjustment: 124
Effective length of query: 94
Effective length of database: 649,847,548
Effective search space: 61085669512
Effective search space used: 61085669512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.73 gvh: 0.28 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
32.0 %: nuclear
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: peroxisomal

>> prediction for Contig-U15454-1 is cyt

VS (DIR, S) 2
VH (FL, L) 3
VF (FL, S) 3
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0