Contig-U15454-1 |
Contig ID |
Contig-U15454-1 |
Contig update |
2004. 6.11 |
Contig sequence |
|
Gap |
no gap |
Contig length |
654 |
Chromosome number (1..6, M) |
5 |
Chromosome length |
5062330 |
Start point |
2228037 |
End point |
2227384 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
10 |
Number of EST |
12 |
Link to clone list |
U15454 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
|
dna update |
2009. 1.27 |
Homology vs DNA |
Query= Contig-U15454-1 (Contig-U15454-1Q) /CSM_Contig/Contig-U15454-1Q.Seq.d (654 letters)
Database: ddbj_B 98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ420751) Dictyostelium discoideum cDNA clone:ddv40g07, 5' ... 1197 0.0 1 (BJ421729) Dictyostelium discoideum cDNA clone:ddv43k14, 5' ... 1193 0.0 1 (BJ415628) Dictyostelium discoideum cDNA clone:ddv23n03, 5' ... 1185 0.0 1 (AU261383) Dictyostelium discoideum vegetative cDNA clone:VS... 1152 0.0 1 (BJ420742) Dictyostelium discoideum cDNA clone:ddv40d11, 5' ... 1150 0.0 1 (C22928) Dictyostelium discoideum gamete cDNA, clone FC-AN14. 1148 0.0 1 (BJ439396) Dictyostelium discoideum cDNA clone:ddv40g07, 3' ... 1148 0.0 1 (BJ414487) Dictyostelium discoideum cDNA clone:ddv19h09, 5' ... 1100 0.0 2 (BJ428073) Dictyostelium discoideum cDNA clone:ddv10m13, 3' ... 1051 0.0 2 (BJ439384) Dictyostelium discoideum cDNA clone:ddv40d11, 3' ... 1021 0.0 1 (C92363) Dictyostelium discoideum slug cDNA, clone SSE645. 783 0.0 2 (AU072474) Dictyostelium discoideum slug cDNA, clone SSE645. 345 e-126 2 (AU262740) Dictyostelium discoideum vegetative cDNA clone:VS... 264 4e-66 1 (EC760587) PSE00001353 rw_mgpallid Polysphondylium pallidum ... 56 2e-19 3 (EC762813) PSE00002741 rw_mgpallid Polysphondylium pallidum ... 56 2e-19 3 (AU266424) Dictyostelium discoideum vegetative cDNA clone:VS... 78 5e-10 1 (EC760569) PSE00006989 rw_mgpallid Polysphondylium pallidum ... 52 4e-09 2 (EC744550) PSE00004491 rw_mgpallid Polysphondylium pallidum ... 58 4e-04 1 (EF145722) Populus trichocarpa clone WS0112_P04 unknown mRNA. 56 0.002 1 (CU224148) Populus EST from leave. 56 0.002 1 (DT526487) WS02048.C21_C19 PTxN-IB-N-A-11 Populus trichocarp... 56 0.002 1 (DT524208) WS02041.C21.1_O19 PTxN-IB-N-A-11 Populus trichoca... 56 0.002 1 (DT523406) WS02039.B21_J20 PTxN-IB-N-A-11 Populus trichocarp... 56 0.002 1 (DT507917) WS02419.BR_J02 PTxD-ICC-N-A-14 Populus trichocarp... 56 0.002 1 (DT505464) WS01810.C21_P23 PTxD-IL-N-A-9 Populus trichocarpa... 56 0.002 1 (DT502610) WS0133.BR_J12 PTxD-IL-FL-A-4 Populus trichocarpa ... 56 0.002 1 (DT499530) WS0118.BR_J02 PT-P-FL-A-2 Populus trichocarpa cDN... 56 0.002 1 (DT495269) WS0112.BR_P04 PT-P-FL-A-2 Populus trichocarpa cDN... 56 0.002 1 (DN496825) Q020C04.5pR Populus dormant bud cDNA library Popu... 56 0.002 1 (DN487214) Q020C04.3pR Populus dormant bud cDNA library Popu... 56 0.002 1 (DB891923) Populus nigra mRNA, clone: PnFL2-097_P03, 5'end. 56 0.002 1 (CX657902) PO01006G07 Poplar SC cDNA library Populus alba x ... 56 0.002 1 (CX184770) E11_45-81_09.ab1 leaf inoculated with Marssonia p... 56 0.002 1 (CX182484) C04_45-56_06.ab1 leaf inoculated with Marssonia p... 56 0.002 1 (CV265337) WS02026.B21_P15 PTxN-IB-N-A-11 Populus trichocarp... 56 0.002 1 (CV248240) WS0112.B21_P04 PT-P-FL-A-2 Populus trichocarpa cD... 56 0.002 1 (CV243384) WS02518.B21_L14 PT-MB-N-A-15 Populus trichocarpa ... 56 0.002 1 (CV233928) WS01212.B21_O19 PT-GT-FL-A-3 Populus trichocarpa ... 56 0.002 1 (AJ646157) Populus tremula x P. tremuloides/Amanita muscaria... 56 0.002 1 (CF231280) PtaC0019E6E0610 Poplar cDNA library from cambial ... 56 0.002 1 (CB833317) R01C12 two-month-old roots from clone 'Beaupre' P... 56 0.002 1 (CA929873) MTU2CA.P3.H06 Aspen apex cDNA Library Populus tre... 56 0.002 1 (CA929744) MTU2CA.P2.B05 Aspen apex cDNA Library Populus tre... 56 0.002 1 (CA929228) MTU2CA.P10.G09 Aspen apex cDNA Library Populus tr... 56 0.002 1 (CA928492) MTU6TR.P3.C11 Aspen root cDNA Library Populus tre... 56 0.002 1 (CA928477) MTU6TR.P3.B08 Aspen root cDNA Library Populus tre... 56 0.002 1 (CA928286) MTU6TR.P18.H02 Aspen root cDNA Library Populus tr... 56 0.002 1 (CA928062) MTU6TR.P16.C12 Aspen root cDNA Library Populus tr... 56 0.002 1 (CA928005) MTU6TR.P15.F04 Aspen root cDNA Library Populus tr... 56 0.002 1 (CA924222) MTU7CL.P3.C02 Aspen leaf cDNA Library Populus tre... 56 0.002 1 (CA825586) R62A06 two-month-old roots from clone 'Beaupre' P... 56 0.002 1 (CA823832) R32A08 two-month-old roots from clone 'Beaupre' P... 56 0.002 1 (CA822178) R04F08 two-month-old roots from clone 'Beaupre' P... 56 0.002 1 (CA821993) R02D11 two-month-old roots from clone 'Beaupre' P... 56 0.002 1 (BU887670) R065A01 Populus root cDNA library Populus tremula... 56 0.002 1 (BU885277) R028H07 Populus root cDNA library Populus tremula... 56 0.002 1 (BU883026) UM85TD07 Populus flower cDNA library Populus tric... 56 0.002 1 (BU881533) UM64TA03 Populus flower cDNA library Populus tric... 56 0.002 1 (BU880346) UM44TG04 Populus flower cDNA library Populus tric... 56 0.002 1 (BU879517) V061B12 Populus flower cDNA library Populus trich... 56 0.002 1 (BU875644) V009E09 Populus flower cDNA library Populus trich... 56 0.002 1 (BU864646) S043C06 Populus imbibed seed cDNA library Populus... 56 0.002 1 (BU861591) S004A09 Populus imbibed seed cDNA library Populus... 56 0.002 1 (BU833430) T047H09 Populus apical shoot cDNA library Populus... 56 0.002 1 (BU822746) UB42BPH04 Populus tremula cambium cDNA library Po... 56 0.002 1 (BU816833) N071H07 Populus bark cDNA library Populus tremula... 56 0.002 1 (BU815796) N046G02 Populus bark cDNA library Populus tremula... 56 0.002 1 (AI164364) A060P79U Hybrid aspen plasmid library Populus tre... 56 0.002 1 (BI138580) F109P53Y Populus flower cDNA library Populus tric... 56 0.002 1 (BI130017) G099P07Y Populus cambium cDNA library Populus tre... 56 0.002 1 (EH235033) JGI_ACAC8785.fwd ACAC Phakopsora pachyrhizi TW72-... 38 0.002 4 (EH231132) JGI_ACAC8785.rev ACAC Phakopsora pachyrhizi TW72-... 38 0.002 4 (EF145519) Populus trichocarpa clone WS01125_J22 unknown mRNA. 54 0.007 1 (DT497147) WS01125.BR_J22 PT-P-FL-A-2 Populus trichocarpa cD... 54 0.007 1 (CA928607) MTU6TR.P4.F07 Aspen root cDNA Library Populus tre... 54 0.007 1 (AY130377) Scyliorhinus canicula ribosomal protein S7 mRNA, ... 40 0.012 2 (EC760370) PSE00002242 rw_mgpallid Polysphondylium pallidum ... 52 0.026 1 (EC745911) PSE00006957 rw_mgpallid Polysphondylium pallidum ... 52 0.026 1 (EC745434) PSE00003166 rw_mgpallid Polysphondylium pallidum ... 52 0.026 1 (EC744236) PSE00001920 rw_mgpallid Polysphondylium pallidum ... 52 0.026 1 (AI163106) A032P63U Hybrid aspen plasmid library Populus tre... 50 0.10 1 (EE001786) ROE00013441 Rhizopus oryzae Company Rhizopus oryz... 38 0.17 2 (EE004253) ROE00013345 Rhizopus oryzae Company Rhizopus oryz... 38 0.18 2 (EE007925) ROE00003654 Rhizopus oryzae Company Rhizopus oryz... 38 0.21 2 (AC008692) Homo sapiens chromosome 5 clone CTB-65N22, comple... 48 0.41 1 (AC091837) Homo sapiens chromosome 5 clone CTD-2105A1, WORKI... 48 0.41 1 (AC018996) Homo sapiens clone RP11-659I4, WORKING DRAFT SEQU... 48 0.41 1 (DV556217) DC05031H07 Panax ginseng cDNA library Panax ginse... 48 0.41 1 (FE450689) CAOS15475.fwd CAOS Selaginella moellendorffii mix... 48 0.41 1 (FE450688) CAOS15475.rev CAOS Selaginella moellendorffii mix... 48 0.41 1 (CU024872) Zebrafish DNA sequence from clone DKEY-58J5 in li... 34 0.47 5 (GD254790) ZYta097 Young leaves cDNA library of tea plant (C... 38 1.0 2 (GD254791) ZYta098 Young leaves cDNA library of tea plant (C... 38 1.0 2 (ER481406) 1093015265402 Global-Ocean-Sampling_GS-35-01-01-1... 44 1.0 2 (BP192119) Dugesia japonica cDNA, clone: EYE_0067, expressed... 34 1.6 2 (EH431365) NPE00000621 Neocallimastix patriciarum ZAP II cDN... 46 1.6 1 (DN910295) Cuc4_4_D09 Cucumber fruit development cDNA librar... 46 1.6 1 (AM739074) Cucumis melo subsp. melo EST, clone 15d_40-C06-M13R. 46 1.6 1 (AM738844) Cucumis melo subsp. melo EST, clone 15d_24-A12-M13R. 46 1.6 1 (AM736606) Cucumis melo subsp. melo EST, clone 15d_15-B02-M13R. 46 1.6 1 (AM726335) Cucumis melo subsp. melo EST, clone HS_17-E04-M13R. 46 1.6 1 (AM726135) Cucumis melo subsp. melo EST, clone HS_28-E05-M13R. 46 1.6 1 (AM725641) Cucumis melo subsp. melo EST, clone HS_09-E06-M13R. 46 1.6 1 (AM725479) Cucumis melo subsp. melo EST, clone HS_38-E01-M13R. 46 1.6 1 (AM724758) Cucumis melo subsp. melo EST, clone HS_31-B05-M13R. 46 1.6 1 (AM723924) Cucumis melo subsp. melo EST, clone HS_39-H02-M13R. 46 1.6 1 (AM720566) Cucumis melo subsp. melo EST, clone PSI_19-G12-M13R. 46 1.6 1 (AM719193) Cucumis melo subsp. melo EST, clone PS_06-F09-M13R. 46 1.6 1 (AM716436) Cucumis melo subsp. agrestis EST, clone AI_04-G12... 46 1.6 1 (AM714813) Cucumis melo subsp. agrestis EST, clone AI_28-D02... 46 1.6 1 (CO998610) csa01-3ms1-f05 Csa01 Cucumis sativus cDNA clone c... 46 1.6 1 (CK764729) csa01-2ms3-g04 Csa01 Cucumis sativus cDNA clone c... 46 1.6 1 (CK700721) EST0008 Cucumber Young Fruit cDNA Lambda TriplEx ... 46 1.6 1 (CK085730) RG6_G09 Cucumber leaf Cucumis sativus cDNA, mRNA ... 46 1.6 1 (EB144417) 011003ABDA006799HT (ABDA) Royal Gala fruit stored... 42 2.5 2 (CQ972465) Sequence 208 from Patent EP1491639. 42 2.6 2 (EB136505) 010613AAXA006952HT (AAXA) Royal Gala 126 DAFB fru... 42 2.6 2 (EB141531) 010813AASB005739HT (AASB) Royal Gala 10 DAFB frui... 42 2.7 2 (EB125400) 010425AASA006958HT (AASA) Royal Gala 10 DAFB frui... 42 2.9 2 (EB151319) 030203ABPB003896HT (ABPB) M9 root tips Malus x do... 42 2.9 2 (DT002504) Mdrta1014L17.g1 Apple_EST_Mdrta Malus x domestica... 42 3.3 2 (CO486604) GQ0209.TB_N22 GQ020: Clean ROOTS systems -Diurnal... 38 3.5 2 (CO486591) GQ0209.B7_N22 GQ020: Clean ROOTS systems -Diurnal... 38 3.7 2 (AM484445) Vitis vinifera contig VV78X158991.42, whole genom... 38 4.9 2 (AX344790) Sequence 215 from Patent WO0200927. 44 6.4 1 (AC121066) Oryctolagus cuniculus strain New Zealand White cl... 44 6.4 1 (AL359373) Human DNA sequence from clone RP11-5L19 on chromo... 44 6.4 1 (AL356115) Human DNA sequence from clone RP11-486O22 on chro... 44 6.4 1 (AC074321) Homo sapiens chromosome 10 clone RP11-122F14, com... 44 6.4 1 (AC140824) Homo sapiens chromosome 5 clone RP11-813H11, WORK... 44 6.4 1 (AC046146) Mus musculus chromosome 12 clone RP23-321N21, ***... 44 6.4 1 (AC222340) Bos taurus clone CH240-415G5, WORKING DRAFT SEQUE... 44 6.4 1 (AC176098) Strongylocentrotus purpuratus clone R3-24E23, WOR... 44 6.4 1 (AC168471) Strongylocentrotus purpuratus clone R3-35A16, WOR... 44 6.4 1 (AC023953) Homo sapiens chromosome 15 clone RP11-112M7 map 1... 44 6.4 1 (BH186180) 028_P_06-21 SmBAC1 Schistosoma mansoni genomic cl... 44 6.4 1 (AL623128) T7 end of clone 028DH03 of library SmBAC1 from st... 44 6.4 1 (DH284599) Oryzias latipes Fosmid clone:GOLWFno625_h05, reve... 44 6.4 1 (CR897718) Sus scrofa BES. 44 6.4 1 (CE578468) tigr-gss-dog-17000366220971 Dog Library Canis lup... 44 6.4 1 (DW072489) CLLZ3920.b1_O19.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1 (DW071445) CLLZ2844.b1_H15.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1 (DW069725) CLLY9542.b1_L10.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1 (DW069517) CLLY9330.b1_D05.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1 (DW067015) CLLY6492.b1_H16.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1 (DW066692) CLLY6192.b1_O11.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1 (DW066245) CLLY5778.b1_C05.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1 (DW057360) CLLX9956.b1_H18.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1 (DW057214) CLLX9801.b1_A04.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1 (DW057139) CLLX9721.b1_B07.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1 (DW056702) CLLX9262.b1_K11.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1 (DW054418) CLLX6990.b1_K19.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1 (DW054047) CLLX6641.b1_B05.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1 (DW053517) CLLX6146.b1_C01.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1 (DW053165) CLLX5816.b2_O13.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1 (DW053086) CLLX574.b1_L23.ab1 CLL(XYZ) lettuce saligna Lactu... 44 6.4 1 (DW051698) CLLX4452.b1_G10.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1 (DW051527) CLLX4295.b1_M17.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1 (DW051197) CLLX3983.b1_N11.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1 (DW050894) CLLX3684.b1_G10.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1 (DW050843) CLLX3631.b1_N19.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1 (DW049849) CLLX2619.b1_F08.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1 (DW049641) CLLX2407.b1_N01.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1 (DW049595) CLLX2360.b1_O13.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1 (DW049182) CLLX1936.b1_O03.ab1 CLL(XYZ) lettuce saligna Lact... 44 6.4 1 (DW048498) CLLX15089.b2_B05.ab1 CLL(XYZ) lettuce saligna Lac... 44 6.4 1 (DW045872) CLLX12623.b1_N12.ab1 CLL(XYZ) lettuce saligna Lac... 44 6.4 1 (DW045531) CLLX12309.b1_I05.ab1 CLL(XYZ) lettuce saligna Lac... 44 6.4 1 (DW045515) CLLX12294.b1_K01.ab1 CLL(XYZ) lettuce saligna Lac... 44 6.4 1 (DW044612) CLLX11440.b2_P04.ab1 CLL(XYZ) lettuce saligna Lac... 44 6.4 1 (DV182598) CT010_A12_CT010_3700_91.ab1 C. tentans tissue cul... 44 6.4 1 (CX655408) PO02034D11 Poplar SC cDNA library Populus alba x ... 44 6.4 1 (BE144605) PM0-HT0171-290999-001-g08 HT0171 Homo sapiens cDN... 44 6.4 1 (BE144598) PM0-HT0171-290999-001-d09 HT0171 Homo sapiens cDN... 44 6.4 1 (CU075906) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 7.0 2 (CN445686) Mdfw2003h02.y1 Mdfw Malus x domestica cDNA clone ... 38 8.2 2 (AM442712) Vitis vinifera contig VV78X087547.4, whole genome... 38 9.8 2
>(BJ420751) Dictyostelium discoideum cDNA clone:ddv40g07, 5' end, single read. Length = 632
Score = 1197 bits (604), Expect = 0.0 Identities = 604/604 (100%) Strand = Plus / Plus
Query: 7 agccttaactttagacctttgacaaccaaaatgcttaacaagaaaatcatcaaaccagct 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 agccttaactttagacctttgacaaccaaaatgcttaacaagaaaatcatcaaaccagct 60
Query: 67 ggtaaagttgccactgaattcgaaaacactgttgcccaagcattagttgatttggaaaac 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ggtaaagttgccactgaattcgaaaacactgttgcccaagcattagttgatttggaaaac 120
Query: 127 aacaacgccgaattaaaagacttaaaagatttatcagtctgttcagtcaaggaagtcgat 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aacaacgccgaattaaaagacttaaaagatttatcagtctgttcagtcaaggaagtcgat 180
Query: 187 gttgctgaatccaaaaaagctgttgtcatctttgttccattccgtcaactcaaaaactac 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gttgctgaatccaaaaaagctgttgtcatctttgttccattccgtcaactcaaaaactac 240
Query: 247 aacaaaatccaacaaaaattaacctatgaagttgaaaagaaactcggtggtaaacaagtt 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aacaaaatccaacaaaaattaacctatgaagttgaaaagaaactcggtggtaaacaagtt 300
Query: 307 atgttcattgcccaaagacgtatcatccgtaagccagcctcaaacaacaagattaaaatg 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 atgttcattgcccaaagacgtatcatccgtaagccagcctcaaacaacaagattaaaatg 360
Query: 367 caaaagagaccaatctcccgtaccattaaagctgtccacgatgctattctcgatgattta 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 caaaagagaccaatctcccgtaccattaaagctgtccacgatgctattctcgatgattta 420
Query: 427 gtattcccaaacactattgttggtcgtcgtttaagatacagattagatggttcaaaactc 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 gtattcccaaacactattgttggtcgtcgtttaagatacagattagatggttcaaaactc 480
Query: 487 cacaaaatctacttagatcgtaaagaaatgttatcaaacatctctaaagttgactccttc 546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 cacaaaatctacttagatcgtaaagaaatgttatcaaacatctctaaagttgactccttc 540
Query: 547 tctgctgtctaccacaaattaactggtaaagaagttgtctttgaattcactcaacaaacc 606 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 tctgctgtctaccacaaattaactggtaaagaagttgtctttgaattcactcaacaaacc 600
Query: 607 gctg 610 |||| Sbjct: 601 gctg 604
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 98226423 Number of Hits to DB: 711,698,860 Number of extensions: 40002482 Number of successful extensions: 3021828 Number of sequences better than 10.0: 177 Length of query: 654 Length of database: 98,766,808,389 Length adjustment: 24 Effective length of query: 630 Effective length of database: 96,409,374,237 Effective search space: 60737905769310 Effective search space used: 60737905769310 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.16 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
2 |
VH (FL, L) |
3 |
VF (FL, S) |
3 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
1 |
FC-IC (SUB) |
0 |