Contig-U15449-1
Contig ID Contig-U15449-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15449-1 (Contig-U15449-1Q) /CSM_Contig/Contig-U15449-1Q.Seq.d
ATCGTATTGATATTCCCATACTATTTATTCAAAAATATTTAGCCAAACCA
TAAAATGGAATACGATTTAACCAAACAAATATGTTCATTCTTAGATGCAC
ATATGATGCTTCCATTAATTAACTATCTCAAAGATACTCAACAATATCAA
GAGAATGAAATTAATAAAGCAATGGCAGATATTTTATCACAAACTGGTTG
TTGTGATTATGCAATCAATGCTTATGAATCAATTGGTAGAGATACAGCAC
CACTCCAAGCCAAAAAAACAAGAATTGGTTGGAGAACTTAATAAATTAAA
GGAACAATGTTCATTTGTAACTCAATATATTGAATCAAAGAAACAACAAA
AAGAACAACAAAAAGAATTAAAAGAACAACAAAAAGAACAACAAAAAGAA
AAAGATACAGATAAAACTACACCAACTACTACAGATGAAACAACTACCAC
CACCACTACAGCACCAACCACCACCACTACTACAACAACAACAACTATTA
CACCAATTACAGTTATTCCATTTTCACAATTATTAGAGAAAATTACACCA
GAAATTTTAGATAGTATATATAGATTTTCAAAATTATTATTTGAGATTGG
ACAATATGGATCAGCAAGAGAACATTTAGAGATTTTCCTTCAATTATCAC
CAACCCATCAAAATAAAGACAAGAGATTATCAGCATTATGGGGTATCCTC
GAATCAGATATCCTCTCATTGAATTGGGGTCAAGCAGTTGGTGACATTTC
ACCATTACAAGATCAAATCGATTCCAATGGTACACCAGTTGAACAATTGG
GTCAAAGAGCATGGTTAATTCATCGTGCACTCTTTGTCTACTTTTACAAC
CCAGAATCACGTTCATCATTGGTTGATTTACTCTTGGAGGATAAATATTT
AAATGCCATTCAAACCACTTGTCCACACATTCTTCGTTATCTCGCCGTTG
CCATCATTGTCAATAAAAAGAAACAACAATCAAATGTTTTCCAACGTATT
TTAAATGCACTCGTACGTGTCGTCGAACAAGAATCAACGTGGTCAAAATA
GAAATCAACAAAATCAACAAAACCAACAATCTAATGAATCAAATGAAACA
ACAACAACAACAACAACTGCAGCAGCAGCAACAACAACAACTACTACAAC
TGCAACTCCAACTTCCGCTTAAATTTTATTATTAAAATTTTAATAACACA
CACTCATCCATCCACCATCATCTGAAATAATAAAATCACGCCGCACACTC
CGCACCCACATCCGCACCCACATCCGCACCCATCACTTTCACATTTATTC
ATTCATTCATTTAATATTAATATAGATAGAGATAACGATATAGATATATA
ATATCAAATGATACTATTTGTGATCGATTTTTATATAAAAAAAGAAANAA
A

Gap no gap
Contig length 1401
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 2377618
End point 2379019
Strand (PLUS/MINUS) PLUS
Number of clones 5
Number of EST 5
Link to clone list U15449
List of clone(s)

est1=VFG684F,1,517
est2=VFA355F,4,621
est3=VFG167F,4,551
est4=VFE495F,329,890
est5=VFN301Z,713,1401
Translated Amino Acid sequence
sy*yshtiyskifsqtikwnti*pnkyvhs*mhi*cfh*LTISKILNNIKRMKLIKQWQI
FYHKLVVVIMQSMLMNQLVEIQHHSKPKKQELVGELNKLKEQCSFVTQYIESKKQQKEQQ
KELKEQQKEQQKEKDTDKTTPTTTDETTTTTTTAPTTTTTTTTTTITPITVIPFSQLLEK
ITPEILDSIYRFSKLLFEIGQYGSAREHLEIFLQLSPTHQNKDKRLSALWGILESDILSL
NWGQAVGDISPLQDQIDSNGTPVEQLGQRAWLIHRALFVYFYNPESRSSLVDLLLEDKYL
NAIQTTCPHILRYLAVAIIVNKKKQQSNVFQRILNALVRVVEQESTWSK*kstkstkpti
**ik*nnnnnnncsssnnnnyyncnsnfrlnfiikiliththpstii*nnkitphtphph
phphphpslshlfihsfninidrdndidi*yqmilfvidfyikkex


Translated Amino Acid sequence (All Frames)
Frame A:
ivlifpyylfkni*pnhkmeydltkqicsfldahmmlplinylkdtqqyqeneinkamad
ilsqtgccdyainayesigrdtaplqakktrigwrt**ikgtmficnsiy*ikettkrtt
krikrttkrttkrkryr*nytnyyr*nnyhhhystnhhhyynnnnyytnysysiftiire
nytrnfr*yi*ifkiii*dwtiwiskrtfrdfpsiitnpsk*rqeiisimgyprirypli
elgsssw*hftitrsnrfqwyts*tigsksmvnssctlclllqpritfiig*ftlgg*if
kchsnhlsthsslsrrchhcq*kettikcfptyfkctrtcrrtrinvvkieinkinktnn
lmnqmkqqqqqqlqqqqqqqllqlqlqlplkfyy*nfnnthssihhhlk**nhaahsapt
saptsapitftfihsfi*y*yr*r*ryryiisndticdrflykkrxk


Frame B:
sy*yshtiyskifsqtikwnti*pnkyvhs*mhi*cfh*LTISKILNNIKRMKLIKQWQI
FYHKLVVVIMQSMLMNQLVEIQHHSKPKKQELVGELNKLKEQCSFVTQYIESKKQQKEQQ
KELKEQQKEQQKEKDTDKTTPTTTDETTTTTTTAPTTTTTTTTTTITPITVIPFSQLLEK
ITPEILDSIYRFSKLLFEIGQYGSAREHLEIFLQLSPTHQNKDKRLSALWGILESDILSL
NWGQAVGDISPLQDQIDSNGTPVEQLGQRAWLIHRALFVYFYNPESRSSLVDLLLEDKYL
NAIQTTCPHILRYLAVAIIVNKKKQQSNVFQRILNALVRVVEQESTWSK*kstkstkpti
**ik*nnnnnnncsssnnnnyyncnsnfrlnfiikiliththpstii*nnkitphtphph
phphphpslshlfihsfninidrdndidi*yqmilfvidfyikkex


Frame C:
ridipilfiqkylakp*ngirfnqtnmfilrctydasin*lsqrystisre*n**sngry
fitnwll*lcnqcl*inw*rysttpsqknknwlenlin*rnnvhl*lnilnqrnnkknnk
kn*knnkknnkkkkiqiklhqllqmkqlppplqhqpppllqqqqllhqlqlfhfhny*rk
lhqkf*ivyidfqnyylrldnmdqqeni*rfsfnyhqpikiktrdyqhygvssnqissh*
igvkqlvtfhhykiksipmvhqlnnwvkehg*fivhslstfttqnhvhhwliyswrini*
mpfkplvhtffvisplpslsikrnnnqmfsnvf*mhsyvssnknqrgqnrnqqnqqnqqs
nesnetttttttaaaatttttttatptsa*illlkf**htlihppsseiiksrrtlrthi
rthirthhfhiysfihlili*ieiti*iynik*yyl*sifi*kkkx


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15449-1 (Contig-U15449-1Q)
/CSM_Contig/Contig-U15449-1Q.Seq.d
(1401 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15449-1 (Contig-U15449-1Q) /CSM_Contig/Conti... 1092 0.0
Contig-U15608-1 (Contig-U15608-1Q) /CSM_Contig/Conti... 765 0.0
Contig-U00908-1 (Contig-U00908-1Q) /CSM_Contig/Conti... 105 2e-22
Contig-U12804-1 (Contig-U12804-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U15713-1 (Contig-U15713-1Q) /CSM_Contig/Conti... 40 0.009
Contig-U15640-1 (Contig-U15640-1Q) /CSM_Contig/Conti... 38 0.036
Contig-U15319-1 (Contig-U15319-1Q) /CSM_Contig/Conti... 38 0.036
Contig-U10985-1 (Contig-U10985-1Q) /CSM_Contig/Conti... 38 0.036
Contig-U15355-1 (Contig-U15355-1Q) /CSM_Contig/Conti... 36 0.14
Contig-U15239-1 (Contig-U15239-1Q) /CSM_Contig/Conti... 36 0.14

>Contig-U15449-1 (Contig-U15449-1Q) /CSM_Contig/Contig-U15449-1Q.Seq.d
Length = 1401

Score = 1092 bits (551), Expect = 0.0
Identities = 551/551 (100%)
Strand = Plus / Plus


Query: 492 caactattacaccaattacagttattccattttcacaattattagagaaaattacaccag 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 caactattacaccaattacagttattccattttcacaattattagagaaaattacaccag 551


Query: 552 aaattttagatagtatatatagattttcaaaattattatttgagattggacaatatggat 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aaattttagatagtatatatagattttcaaaattattatttgagattggacaatatggat 611


Query: 612 cagcaagagaacatttagagattttccttcaattatcaccaacccatcaaaataaagaca 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 cagcaagagaacatttagagattttccttcaattatcaccaacccatcaaaataaagaca 671


Query: 672 agagattatcagcattatggggtatcctcgaatcagatatcctctcattgaattggggtc 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 agagattatcagcattatggggtatcctcgaatcagatatcctctcattgaattggggtc 731


Query: 732 aagcagttggtgacatttcaccattacaagatcaaatcgattccaatggtacaccagttg 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 aagcagttggtgacatttcaccattacaagatcaaatcgattccaatggtacaccagttg 791


Query: 792 aacaattgggtcaaagagcatggttaattcatcgtgcactctttgtctacttttacaacc 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 aacaattgggtcaaagagcatggttaattcatcgtgcactctttgtctacttttacaacc 851


Query: 852 cagaatcacgttcatcattggttgatttactcttggaggataaatatttaaatgccattc 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 cagaatcacgttcatcattggttgatttactcttggaggataaatatttaaatgccattc 911


Query: 912 aaaccacttgtccacacattcttcgttatctcgccgttgccatcattgtcaataaaaaga 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 aaaccacttgtccacacattcttcgttatctcgccgttgccatcattgtcaataaaaaga 971


Query: 972 aacaacaatcaaatgttttccaacgtattttaaatgcactcgtacgtgtcgtcgaacaag 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972 aacaacaatcaaatgttttccaacgtattttaaatgcactcgtacgtgtcgtcgaacaag 1031


Query: 1032 aatcaacgtgg 1042
|||||||||||
Sbjct: 1032 aatcaacgtgg 1042


Score = 622 bits (314), Expect = e-178
Identities = 328/335 (97%)
Strand = Plus / Plus


Query: 1 atcgtattgatattcccatactatttattcaaaaatatttagccaaaccataaaatggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atcgtattgatattcccatactatttattcaaaaatatttagccaaaccataaaatggaa 60


Query: 61 tacgatttaaccaaacaaatatgttcattcttagatgcacatatgatgcttccattaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tacgatttaaccaaacaaatatgttcattcttagatgcacatatgatgcttccattaatt 120


Query: 121 aactatctcaaagatactcaacaatatcaagagaatgaaattaataaagcaatggcagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aactatctcaaagatactcaacaatatcaagagaatgaaattaataaagcaatggcagat 180


Query: 181 attttatcacaaactggttgttgtgattatgcaatcaatgcttatgaatcaattggtaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attttatcacaaactggttgttgtgattatgcaatcaatgcttatgaatcaattggtaga 240


Query: 241 gatacagcaccactccaagccnnnnnnncaagaattggttggagaacttaataaattaaa 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 241 gatacagcaccactccaagccaaaaaaacaagaattggttggagaacttaataaattaaa 300


Query: 301 ggaacaatgttcatttgtaactcaatatattgaat 335
|||||||||||||||||||||||||||||||||||
Sbjct: 301 ggaacaatgttcatttgtaactcaatatattgaat 335


Score = 293 bits (148), Expect = 4e-79
Identities = 148/148 (100%)
Strand = Plus / Plus


Query: 1163 ttccgcttaaattttattattaaaattttaataacacacactcatccatccaccatcatc 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1163 ttccgcttaaattttattattaaaattttaataacacacactcatccatccaccatcatc 1222


Query: 1223 tgaaataataaaatcacgccgcacactccgcacccacatccgcacccacatccgcaccca 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1223 tgaaataataaaatcacgccgcacactccgcacccacatccgcacccacatccgcaccca 1282


Query: 1283 tcactttcacatttattcattcattcat 1310
||||||||||||||||||||||||||||
Sbjct: 1283 tcactttcacatttattcattcattcat 1310


Score = 63.9 bits (32), Expect = 6e-10
Identities = 32/32 (100%)
Strand = Plus / Plus


Query: 1355 caaatgatactatttgtgatcgatttttatat 1386
||||||||||||||||||||||||||||||||
Sbjct: 1355 caaatgatactatttgtgatcgatttttatat 1386


Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 417 ctacaccaactactacagatga 438
||||||||||||||||||||||
Sbjct: 417 ctacaccaactactacagatga 438


Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Minus


Query: 1179 ttattaaaattttaataa 1196
||||||||||||||||||
Sbjct: 1196 ttattaaaattttaataa 1179


>Contig-U15608-1 (Contig-U15608-1Q) /CSM_Contig/Contig-U15608-1Q.Seq.d
Length = 2443

Score = 765 bits (386), Expect = 0.0
Identities = 393/394 (99%), Gaps = 1/394 (0%)
Strand = Plus / Plus


Query: 640 tcaattatcaccaacccatcaaaataaagacaagagattatcagcattatggggtatcct 699
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1159 tcaattatcaccaacccatcaaaataaagaca-gagattatcagcattatggggtatcct 1217


Query: 700 cgaatcagatatcctctcattgaattggggtcaagcagttggtgacatttcaccattaca 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1218 cgaatcagatatcctctcattgaattggggtcaagcagttggtgacatttcaccattaca 1277


Query: 760 agatcaaatcgattccaatggtacaccagttgaacaattgggtcaaagagcatggttaat 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1278 agatcaaatcgattccaatggtacaccagttgaacaattgggtcaaagagcatggttaat 1337


Query: 820 tcatcgtgcactctttgtctacttttacaacccagaatcacgttcatcattggttgattt 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1338 tcatcgtgcactctttgtctacttttacaacccagaatcacgttcatcattggttgattt 1397


Query: 880 actcttggaggataaatatttaaatgccattcaaaccacttgtccacacattcttcgtta 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1398 actcttggaggataaatatttaaatgccattcaaaccacttgtccacacattcttcgtta 1457


Query: 940 tctcgccgttgccatcattgtcaataaaaagaaacaacaatcaaatgttttccaacgtat 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1458 tctcgccgttgccatcattgtcaataaaaagaaacaacaatcaaatgttttccaacgtat 1517


Query: 1000 tttaaatgcactcgtacgtgtcgtcgaacaagaa 1033
||||||||||||||||||||||||||||||||||
Sbjct: 1518 tttaaatgcactcgtacgtgtcgtcgaacaagaa 1551


Score = 765 bits (386), Expect = 0.0
Identities = 393/394 (99%), Gaps = 1/394 (0%)
Strand = Plus / Plus


Query: 640 tcaattatcaccaacccatcaaaataaagacaagagattatcagcattatggggtatcct 699
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 659 tcaattatcaccaacccatcaaaataaagaca-gagattatcagcattatggggtatcct 717


Query: 700 cgaatcagatatcctctcattgaattggggtcaagcagttggtgacatttcaccattaca 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 cgaatcagatatcctctcattgaattggggtcaagcagttggtgacatttcaccattaca 777


Query: 760 agatcaaatcgattccaatggtacaccagttgaacaattgggtcaaagagcatggttaat 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 agatcaaatcgattccaatggtacaccagttgaacaattgggtcaaagagcatggttaat 837


Query: 820 tcatcgtgcactctttgtctacttttacaacccagaatcacgttcatcattggttgattt 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 tcatcgtgcactctttgtctacttttacaacccagaatcacgttcatcattggttgattt 897


Query: 880 actcttggaggataaatatttaaatgccattcaaaccacttgtccacacattcttcgtta 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 actcttggaggataaatatttaaatgccattcaaaccacttgtccacacattcttcgtta 957


Query: 940 tctcgccgttgccatcattgtcaataaaaagaaacaacaatcaaatgttttccaacgtat 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 tctcgccgttgccatcattgtcaataaaaagaaacaacaatcaaatgttttccaacgtat 1017


Query: 1000 tttaaatgcactcgtacgtgtcgtcgaacaagaa 1033
||||||||||||||||||||||||||||||||||
Sbjct: 1018 tttaaatgcactcgtacgtgtcgtcgaacaagaa 1051


Score = 622 bits (314), Expect = e-178
Identities = 328/335 (97%)
Strand = Plus / Plus


Query: 1 atcgtattgatattcccatactatttattcaaaaatatttagccaaaccataaaatggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 atcgtattgatattcccatactatttattcaaaaatatttagccaaaccataaaatggaa 80


Query: 61 tacgatttaaccaaacaaatatgttcattcttagatgcacatatgatgcttccattaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 tacgatttaaccaaacaaatatgttcattcttagatgcacatatgatgcttccattaatt 140


Query: 121 aactatctcaaagatactcaacaatatcaagagaatgaaattaataaagcaatggcagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 aactatctcaaagatactcaacaatatcaagagaatgaaattaataaagcaatggcagat 200


Query: 181 attttatcacaaactggttgttgtgattatgcaatcaatgcttatgaatcaattggtaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attttatcacaaactggttgttgtgattatgcaatcaatgcttatgaatcaattggtaga 260


Query: 241 gatacagcaccactccaagccnnnnnnncaagaattggttggagaacttaataaattaaa 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 gatacagcaccactccaagccaaaaaaacaagaattggttggagaacttaataaattaaa 320


Query: 301 ggaacaatgttcatttgtaactcaatatattgaat 335
|||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaacaatgttcatttgtaactcaatatattgaat 355


Score = 293 bits (148), Expect = 4e-79
Identities = 148/148 (100%)
Strand = Plus / Plus


Query: 1163 ttccgcttaaattttattattaaaattttaataacacacactcatccatccaccatcatc 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2142 ttccgcttaaattttattattaaaattttaataacacacactcatccatccaccatcatc 2201


Query: 1223 tgaaataataaaatcacgccgcacactccgcacccacatccgcacccacatccgcaccca 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2202 tgaaataataaaatcacgccgcacactccgcacccacatccgcacccacatccgcaccca 2261


Query: 1283 tcactttcacatttattcattcattcat 1310
||||||||||||||||||||||||||||
Sbjct: 2262 tcactttcacatttattcattcattcat 2289


Score = 272 bits (137), Expect = 1e-72
Identities = 137/137 (100%)
Strand = Plus / Plus


Query: 492 caactattacaccaattacagttattccattttcacaattattagagaaaattacaccag 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 caactattacaccaattacagttattccattttcacaattattagagaaaattacaccag 571


Query: 552 aaattttagatagtatatatagattttcaaaattattatttgagattggacaatatggat 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 aaattttagatagtatatatagattttcaaaattattatttgagattggacaatatggat 631


Query: 612 cagcaagagaacattta 628
|||||||||||||||||
Sbjct: 632 cagcaagagaacattta 648


Score = 50.1 bits (25), Expect = 9e-06
Identities = 32/33 (96%), Gaps = 1/33 (3%)
Strand = Plus / Plus


Query: 1355 caaatgatactatttg-tgatcgatttttatat 1386
|||||||||||||||| ||||||||||||||||
Sbjct: 2335 caaatgatactatttgttgatcgatttttatat 2367


Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 417 ctacaccaactactacagatga 438
||||||||||||||||||||||
Sbjct: 437 ctacaccaactactacagatga 458


Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Minus


Query: 1179 ttattaaaattttaataa 1196
||||||||||||||||||
Sbjct: 2175 ttattaaaattttaataa 2158


>Contig-U00908-1 (Contig-U00908-1Q) /CSM_Contig/Contig-U00908-1Q.Seq.d
Length = 166

Score = 105 bits (53), Expect = 2e-22
Identities = 116/146 (79%)
Strand = Plus / Plus


Query: 1163 ttccgcttaaattttattattaaaattttaataacacacactcatccatccaccatcatc 1222
||||| || ||||||||| || ||||||| ||||||| | ||||||| ||| || ||||
Sbjct: 10 ttccgnttnaattttattnttnaaattttnataacacncnctcatccntcccccntcatt 69


Query: 1223 tgaaataataaaatcacgccgcacactccgcacccacatccgcacccacatccgcaccca 1282
|||||||| |||||||||||| | | ||| |||| |||||| ||| || |||| |||
Sbjct: 70 tgaaataanaaaatcacgccgnncncnccgnacccncatccgnncccncanccgcncccn 129


Query: 1283 tcactttcacatttattcattcattc 1308
| ||||| | ||||||| ||| |||
Sbjct: 130 nccctttcncntttattcnttcnttc 155


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,879
Number of Sequences: 8402
Number of extensions: 26879
Number of successful extensions: 2992
Number of sequences better than 10.0: 326
length of query: 1401
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1385
effective length of database: 7,941,110
effective search space: 10998437350
effective search space used: 10998437350
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.26
Homology vs DNA
Query= Contig-U15449-1 (Contig-U15449-1Q) /CSM_Contig/Contig-U15449-1Q.Seq.d
(1401 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ435393) Dictyostelium discoideum cDNA clone:ddv27b01, 3' ... 632 0.0 3
(BJ326717) Dictyostelium discoideum cDNA clone:dda17a24, 5' ... 505 0.0 3
(BJ363521) Dictyostelium discoideum cDNA clone:ddc27j01, 5' ... 511 0.0 3
(BJ418861) Dictyostelium discoideum cDNA clone:ddv34c09, 5' ... 517 0.0 3
(BJ425539) Dictyostelium discoideum cDNA clone:ddv56f04, 5' ... 517 0.0 3
(BJ390190) Dictyostelium discoideum cDNA clone:dds21p10, 5' ... 428 0.0 4
(BJ410742) Dictyostelium discoideum cDNA clone:ddv1n13, 5' e... 428 0.0 5
(BJ412808) Dictyostelium discoideum cDNA clone:ddv9n24, 5' e... 751 0.0 1
(BJ412950) Dictyostelium discoideum cDNA clone:ddv13e17, 5' ... 511 0.0 3
(BJ361080) Dictyostelium discoideum cDNA clone:ddc9a19, 5' e... 517 0.0 3
(BJ413250) Dictyostelium discoideum cDNA clone:ddv14g22, 5' ... 517 e-175 2
(BJ387869) Dictyostelium discoideum cDNA clone:dds5d18, 5' e... 505 e-172 2
(AU261918) Dictyostelium discoideum vegetative cDNA clone:VS... 293 3e-79 3
(AU263331) Dictyostelium discoideum vegetative cDNA clone:VS... 293 3e-79 3
(BJ431273) Dictyostelium discoideum cDNA clone:ddv13e17, 3' ... 293 9e-75 1
(BJ428911) Dictyostelium discoideum cDNA clone:ddv1n13, 3' e... 293 9e-75 1
(BJ374668) Dictyostelium discoideum cDNA clone:ddc9a19, 3' e... 293 9e-75 1
(BJ437438) Dictyostelium discoideum cDNA clone:ddv34c09, 3' ... 145 2e-61 2
(BJ431611) Dictyostelium discoideum cDNA clone:ddv14g22, 3' ... 222 3e-53 1
(BJ431121) Dictyostelium discoideum cDNA clone:ddv9n24, 3' e... 222 3e-53 1
(BJ343961) Dictyostelium discoideum cDNA clone:dda17a24, 3' ... 107 1e-18 1
(BJ399342) Dictyostelium discoideum cDNA clone:dds5d18, 3' e... 98 1e-15 1
(FF601555) Le_emcl1_10E08_M13Reverse Little Skate (Leucoraja... 60 2e-04 1
(CN763652) ID0AAA7CG01RM1 ApMS Acyrthosiphon pisum cDNA clon... 58 4e-04 2
(CN585000) USDA-FP_128069 Acyrthosiphon pisum, Pea Aphid Acy... 58 5e-04 2
(ES219039) MpGnorm_ag2_C22 Myzus persicae, tobacco lineage, ... 56 0.001 2
(CQ587331) Sequence 15089 from Patent WO0171042. 58 0.001 1
(CQ587330) Sequence 15088 from Patent WO0171042. 58 0.001 1
(AY119230) Drosophila melanogaster SD17695 full insert cDNA. 58 0.001 1
(AE014297) Drosophila melanogaster chromosome 3R, complete s... 58 0.001 1
(AC008205) Drosophila melanogaster, chromosome 3R, region 96... 58 0.001 1
(AC019823) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 58 0.001 1
(CF588343) USDA-FP_120700-016 Acyrthosiphon pisum, Pea Aphid... 58 0.001 1
(BI626736) RH67775.5prime RH Drosophila melanogaster normali... 58 0.001 1
(BI607928) RH12029.5prime RH Drosophila melanogaster normali... 58 0.001 1
(BI592032) RH09633.5prime RH Drosophila melanogaster normali... 58 0.001 1
(FF334861) 280458121 Pea aphid whole body normalized full le... 58 0.001 1
(FF333739) 280454295 Pea aphid whole body normalized full le... 58 0.001 1
(EX630169) 255462857 Pea aphid whole body normalized full le... 58 0.001 1
(EX622528) 255420543 Pea aphid whole body normalized full le... 58 0.001 1
(EX620738) 255413833 Pea aphid whole body normalized full le... 58 0.001 1
(DW010468) w10m16_M13F Myzus persicae, tobacco lineage, whol... 56 0.001 2
(EE263043) F06_F06fvplus1g12_pDNRf_521816 Myzus persicae, li... 56 0.002 2
(EE261519) C12_C12ff5b23_pDNRf_514850 Myzus persicae, line F... 56 0.002 2
(DR911259) USDA-FP_19387 Citrus sinensis phloem Citrus sinen... 44 0.002 2
(FF313534) 279388344 Pea aphid whole body normalized full le... 56 0.004 1
(CV718741) UCRCS08_0010O23_r Parent Washington Navel Orange ... 44 0.006 2
(CV709442) UCRPT01_0012O02_r Poncirus trifoliata CTV-challen... 44 0.006 2
(CD576157) UCRPT01_03ce10_g3 Poncirus trifoliata CTV-challen... 44 0.006 2
(CX046905) UCRCS09_10H10_g Ruby Orange Developing Seed cDNA ... 44 0.006 2
(CN186276) UCRCS05_0002K09_r Washington Navel Orange Stored ... 44 0.006 2
(CB291725) UCRCS01_03be05_g1 Washington Navel orange cold ac... 44 0.006 2
(CB293432) UCRCS01_06ad07_g1 Washington Navel orange cold ac... 44 0.006 2
(CX048951) UCRCS09_24F06_g Ruby Orange Developing Seed cDNA ... 44 0.006 2
(EY656002) CS00-C1-100-114-G04-CT.F Sweet orange leaf, green... 44 0.006 2
(CX674033) UCRCS10_3F12_b Madame Vinous Sweet Orange Multipl... 44 0.006 2
(DY269966) IC0AAA28BF10RM1 CitNFL Citrus clementina cDNA 5',... 44 0.007 2
(DY272111) IC0AAA30BA11RM1 CitNFL Citrus clementina cDNA 5',... 44 0.007 2
(DY287256) IC0AAA67BD04RM1 CitNFL Citrus clementina cDNA 5',... 44 0.007 2
(DY274852) IC0AAA37DC04RM1 CitNFL Citrus clementina cDNA 5',... 44 0.007 2
(DY294421) IC0AAA85BH10RM1 CitNFL Citrus clementina cDNA 5',... 44 0.008 2
(DY293745) IC0AAA83CF03RM1 CitNFL Citrus clementina cDNA 5',... 44 0.009 2
(DY276699) IC0AAA41DE05RM1 CitNFL Citrus clementina cDNA 5',... 44 0.009 2
(DY274077) IC0AAA35CH03RM2 CitNFL Citrus clementina cDNA 5',... 44 0.009 2
(DY267805) IC0AAA22BH05RM1 CitNFL Citrus clementina cDNA 5',... 44 0.009 2
(DY264237) IC0AAA14AA06RM1 CitNFL Citrus clementina cDNA 5',... 44 0.009 2
(BD106609) Zinc finger protein derivatives and methods there... 40 0.054 2
(AR581560) Sequence 43 from patent US 6790941. 40 0.054 2
(AR156901) Sequence 43 from patent US 6242568. 40 0.054 2
(AR117905) Sequence 43 from patent US 6140466. 40 0.054 2
(BD441398) REGULATION OF GENE EXPRESSION USING SINGLE-CHAIN,... 40 0.056 2
(BD441389) REGULATION OF GENE EXPRESSION USING SINGLE-CHAIN,... 40 0.056 2
(AX429854) Sequence 46 from Patent WO0206463. 40 0.056 2
(AX429841) Sequence 33 from Patent WO0206463. 40 0.056 2
(AR798296) Sequence 46 from patent US 7011972. 40 0.056 2
(AR798287) Sequence 33 from patent US 7011972. 40 0.056 2
(EY812962) PT11-C1-900-036-B08-CT.F Poncirus trifoliata leaf... 40 0.089 2
(DY284889) IC0AAA62CE12RM1 CitNFL Citrus clementina cDNA 5',... 40 0.093 2
(ES226275) MpSG_ag6_A04 Myzus persicae, tobacco lineage, aph... 48 0.14 2
(AY691414) Vryburgia amaryllidis cytochrome b (cytb) gene, p... 36 0.19 3
(CR936285) Zebrafish DNA sequence from clone CH73-35G18 in l... 50 0.23 1
(BX571773) Zebrafish DNA sequence from clone DKEY-174K1 in l... 50 0.23 1
(AL591711) Mouse DNA sequence from clone RP23-19L12 on chrom... 50 0.23 1
(AM920431) Penicillium chrysogenum Wisconsin 54-1255 complet... 50 0.23 1
(AC136496) Drosophila pseudoobscura clone DPSF1-548A12, *** ... 50 0.23 1
(AC190429) Cavia porcellus clone CH234-226C12, WORKING DRAFT... 50 0.23 1
(ET525818) fcg3x.224950a16.f C. graminicola genomic sequence... 50 0.23 1
(CN763965) ID0AAA8CD06RM1 ApMS Acyrthosiphon pisum cDNA clon... 50 0.23 1
(CN763915) ID0AAA8BG11RM1 ApMS Acyrthosiphon pisum cDNA clon... 50 0.23 1
(CN763913) ID0AAA8BG09RM1 ApMS Acyrthosiphon pisum cDNA clon... 50 0.23 1
(CN763901) ID0AAA8BF09RM1 ApMS Acyrthosiphon pisum cDNA clon... 50 0.23 1
(CN763898) ID0AAA8BF06RM1 ApMS Acyrthosiphon pisum cDNA clon... 50 0.23 1
(CN761382) ID0AAA30AG03RM1 ApMS Acyrthosiphon pisum cDNA clo... 50 0.23 1
(CN761105) ID0AAA2BF09RM1 ApMS Acyrthosiphon pisum cDNA clon... 50 0.23 1
(CN758292) ID0AAA21DD02RM1 ApMS Acyrthosiphon pisum cDNA clo... 50 0.23 1
(CN585152) USDA-FP_128222 Acyrthosiphon pisum, Pea Aphid Acy... 50 0.23 1
(CF587795) USDA-FP_120900-041 Acyrthosiphon pisum, Pea Aphid... 50 0.23 1
(CF587792) USDA-FP_120900-085 Acyrthosiphon pisum, Pea Aphid... 50 0.23 1
(FF338044) 280468329 Pea aphid whole body normalized full le... 50 0.23 1
(FC296367) CAGN8674.fwd CAGN Nematostella vectensis Nemve mi... 50 0.23 1
(EY380708) CAXA3030.rev CAXA Helobdella robusta Subtracted L... 50 0.23 1
(EY369075) CAXA12165.rev CAXA Helobdella robusta Subtracted ... 50 0.23 1
(EY365771) CAXA1038.rev CAXA Helobdella robusta Subtracted L... 50 0.23 1
(EX631446) 255523293 Pea aphid whole body normalized full le... 50 0.23 1
(EA766449) Sequence 5 from patent US 7378510. 40 0.27 2
(EA043153) Sequence 5 from patent US 7151201. 40 0.27 2
(AX202417) Sequence 5 from Patent WO0152620. 40 0.27 2
(EA766448) Sequence 4 from patent US 7378510. 40 0.28 2
(EA043152) Sequence 4 from patent US 7151201. 40 0.28 2
(AX202416) Sequence 4 from Patent WO0152620. 40 0.28 2
(CT998565) Zebrafish DNA sequence from clone DKEY-197A6 in l... 42 0.37 3
(AM453526) Vitis vinifera contig VV78X277525.1, whole genome... 48 0.45 2
(EA766486) Sequence 66 from patent US 7378510. 40 0.48 2
(EA043190) Sequence 66 from patent US 7151201. 40 0.48 2
(AX202478) Sequence 66 from Patent WO0152620. 40 0.48 2
(EA425481) Sequence 1 from patent US 7329728. 40 0.57 2
(BD307805) LIGAND ACTIVATED TRANSCRIPTIONAL REGULATOR PROTEINS. 40 0.57 2
(AX128340) Sequence 1 from Patent WO0130843. 40 0.57 2
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 40 0.57 17
(EA425482) Sequence 2 from patent US 7329728. 40 0.57 2
(BD307806) LIGAND ACTIVATED TRANSCRIPTIONAL REGULATOR PROTEINS. 40 0.57 2
(AX128341) Sequence 2 from Patent WO0130843. 40 0.57 2
(EA425483) Sequence 3 from patent US 7329728. 40 0.58 2
(BD307807) LIGAND ACTIVATED TRANSCRIPTIONAL REGULATOR PROTEINS. 40 0.58 2
(AX128342) Sequence 3 from Patent WO0130843. 40 0.58 2
(CR855260) Zebrafish DNA sequence from clone DKEY-151C10 in ... 40 0.60 9
(DQ150035) Pieris napi voucher PNA1 12S ribosomal RNA gene, ... 44 0.61 2
(EU597124) Artogeia melete mitochondrion, complete genome. 44 0.84 3
(BX000460) Zebrafish DNA sequence from clone CH211-15E22 in ... 34 0.86 9
(CU633985) Zebrafish DNA sequence from clone CH73-285B23 in ... 48 0.90 1
(CR927553) Zebrafish DNA sequence from clone DKEY-206P8 in l... 48 0.90 1
(BX649335) Zebrafish DNA sequence from clone DKEY-24C2 in li... 48 0.90 1
(AL929291) Zebrafish DNA sequence from clone CH211-189P10 in... 48 0.90 1
(CT009682) Mouse DNA sequence from clone RP23-136H15 on chro... 48 0.90 1
(AC118603) Mus musculus chromosome 16, clone RP24-79L6, comp... 48 0.90 1
(EA199390) Sequence 63705 from patent US 7214786. 48 0.90 1
(EA146474) Sequence 10789 from patent US 7214786. 48 0.90 1
(AC130931) Rattus norvegicus clone CH230-85N17, *** SEQUENCI... 48 0.90 1
(AC113779) Rattus norvegicus clone CH230-94G1, WORKING DRAFT... 48 0.90 1
(CT025721) D.miranda DNA sequence *** SEQUENCING IN PROGRESS... 48 0.90 1
(BX005198) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 48 0.90 1
(DX807631) 3010617 VV10 Chlamydomonas reinhardtii genomic cl... 48 0.90 1
(DX796412) 3010544 VV10 Chlamydomonas reinhardtii genomic cl... 48 0.90 1
(CU010522) Equus caballus GSS, BAC clone CH241-82N21, SP6 en... 48 0.90 1
(AM732626) Cucumis melo subsp. melo EST, clone CI_48-C03-M13R. 48 0.90 1
(AM726965) Cucumis melo subsp. agrestis EST, clone A_01-G04-... 48 0.90 1
(AM723201) Cucumis melo subsp. melo EST, clone PSI_37-A12-M13R. 48 0.90 1
(CV777572) FGAS071978 Triticum aestivum FGAS: Library 2 Gate... 48 0.90 1
(CN807509) HDAH04E11.F Leech Haementeria depressa library HD... 48 0.90 1
(CD921790) G750.100A07F010507 G750 Triticum aestivum cDNA cl... 48 0.90 1
(BQ609530) BRY_5462 wheat EST endosperm library Triticum aes... 48 0.90 1
(EW758891) sb_009_04I06_m13reverselong Onychiurus arcticus d... 48 0.90 1
(EW757021) sb_008_07B07_m13reverselong Onychiurus arcticus r... 48 0.90 1
(EW756511) sb_008_05K01_m13reverselong Onychiurus arcticus r... 48 0.90 1
(CR457482) Zebrafish DNA sequence from clone CH211-159P3 in ... 42 1.1 6
(CK933374) CGF1004286_D07 Developing fruit juice sac at 38 D... 36 1.1 2
(ER607986) 1093016289606 Global-Ocean-Sampling_GS-36-01-01-2... 38 1.1 2
(DY297817) IC0AAA93DD02RM1 CitNFL Citrus clementina cDNA 5',... 36 1.4 2
(DN806516) 76954409 Sea Urchin primary mesenchyme cell cDNA ... 46 1.7 2
(CR933102) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 1.8 5
(AX346684) Sequence 1755 from Patent WO0200928. 40 2.1 2
(AC040172) Homo sapiens chromosome 16 clone RP11-60I4, compl... 34 2.3 6
(AL078603) Human DNA sequence from clone RP3-364H10 on chrom... 46 2.3 4
(AC187866) Populus trichocarpa clone Pop1-7B1, complete sequ... 38 2.3 4
(FF296088) 279307827 Pea aphid whole body normalized full le... 36 2.4 2
(AY576331) Arachnocampa luminosa biotype 3 16S large subunit... 36 2.5 2
(AY576330) Arachnocampa luminosa biotype 2 16S large subunit... 36 2.5 2
(AM464846) Vitis vinifera contig VV78X197039.5, whole genome... 42 2.6 2
(AC181267) Strongylocentrotus purpuratus clone R3-4012M21, W... 38 2.9 4
(AX202582) Sequence 55 from Patent WO0153480. 40 3.2 2
(AF019982) Dictyostelium discoideum Pks44 (pks44) gene, part... 36 3.5 4
(CR536613) Zebrafish DNA sequence from clone DKEY-88L16 in l... 46 3.6 1
(BX666059) Zebrafish DNA sequence from clone DKEYP-108D9 in ... 46 3.6 1
(BX465186) Zebrafish DNA sequence from clone DKEY-106M10 in ... 46 3.6 1
(AC164559) Mus musculus BAC clone RP23-198H17 from chromosom... 46 3.6 1
(AC159822) Mus musculus BAC clone RP23-152C21 from chromosom... 46 3.6 1
(AC141876) Mus musculus BAC clone RP24-289M9 from chromosome... 46 3.6 1
(AC122846) Mus musculus BAC clone RP23-156M18 from 19, compl... 46 3.6 1
(AC098875) Mus musculus BAC clone RP23-1E10 from 19, complet... 46 3.6 1
(AM451502) Vitis vinifera, whole genome shotgun sequence, co... 46 3.6 1
(AM447095) Vitis vinifera contig VV78X249740.3, whole genome... 46 3.6 1
(AF371426) Saccharomyces cerevisiae clone pktel101 telomeric... 46 3.6 1
(AC151955) Populus trichocarpa clone Pop1-041G20, complete s... 46 3.6 1
(AC149480) Populus trichocarpa clone Pop1-048O04, complete s... 46 3.6 1
(AC194582) Canis familiaris chromosome 31, clone XX-8B8, com... 46 3.6 1
(AC188643) Canis familiaris chromosome 31, clone XX-371K20, ... 46 3.6 1
(AM910986) Plasmodium knowlesi strain H chromosome 4, comple... 46 3.6 1
(AP001000) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 46 3.6 1
(AC208189) Homo sapiens FOSMID clone ABC12-46880900K1 from c... 46 3.6 1
(AC155630) Zea mays strain B73 clone ZMMBBc0477G13, *** SEQU... 46 3.6 1
(AC155442) Zea mays strain B73 clone ZMMBBb0284B14, *** SEQU... 46 3.6 1
(AC132713) Rattus norvegicus clone CH230-218G21, WORKING DRA... 46 3.6 1
(AC119068) Canis lupus familiaris clone RP81-359E18, WORKING... 46 3.6 1
(AC114036) Rattus norvegicus clone CH230-62L5, *** SEQUENCIN... 46 3.6 1
(AC112181) Homo sapiens chromosome 5 clone RP11-149M10, WORK... 46 3.6 1
(AC108230) Rattus norvegicus chromosome 18 clone CH230-7M22,... 46 3.6 1
(AC107101) Rattus norvegicus chromosome 18 clone CH230-25I4,... 46 3.6 1
(AC098461) Rattus norvegicus clone CH230-2F17, WORKING DRAFT... 46 3.6 1
(AC095278) Rattus norvegicus clone CH230-10N15, WORKING DRAF... 46 3.6 1
(CU929870) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.6 1
(CU928836) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.6 1
(CU928805) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.6 1
(AC080053) Homo sapiens chromosome 11 clone RP11-816K15 map ... 46 3.6 1
(AC068516) Homo sapiens chromosome 11 clone RP11-816K15 map ... 46 3.6 1
(AC027356) Homo sapiens clone RP11-114O23, LOW-PASS SEQUENCE... 46 3.6 1
(CU302441) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.6 1
(AC221789) Bos taurus clone CH240-385E20, WORKING DRAFT SEQU... 46 3.6 1
(AC194585) Canis lupus familiaris chromosome 31 clone XX-458... 46 3.6 1
(AC191330) Zea mays chromosome 1 clone CH201-477G13; ZMMBBc0... 46 3.6 1
(AC009644) Homo sapiens chromosome 11 clone RP11-121G24 map ... 46 3.6 1
(AZ692795) ENTMD70TR Entamoeba histolytica Sheared DNA Entam... 46 3.6 1
(AZ096507) RPCI-23-448L14.TV RPCI-23 Mus musculus genomic cl... 46 3.6 1
(AZ015002) RPCI-23-366E21.TV RPCI-23 Mus musculus genomic cl... 46 3.6 1
(ET861278) CHO_OF155xi03r1.ab1 CHO_OF Nicotiana tabacum geno... 46 3.6 1
(ET861204) CHO_OF155xi03f1.ab1 CHO_OF Nicotiana tabacum geno... 46 3.6 1
(DX645706) 2059831 VV02 Ustilago maydis genomic clone 828109... 46 3.6 1
(CL507851) SAIL_789_D01.v1 SAIL Collection Arabidopsis thali... 46 3.6 1
(CG842547) Ynhw3161 HW-YUBAC Bos taurus genomic clone HW-YUB... 46 3.6 1
(CG689675) ZMMBBc0132D21f ZMMBBc (EcoRI) Zea mays subsp. may... 46 3.6 1
(CG267534) OGVDT56TV ZM_0.7_1.5_KB Zea mays genomic clone ZM... 46 3.6 1
(CE541312) tigr-gss-dog-17000366030107 Dog Library Canis lup... 46 3.6 1
(EE628694) CHEL11283.b1_F13.ab1 CHE(LMS) serpentine sunflowe... 46 3.6 1
(CK617029) ou32b07.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK616991) ou31c10.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK616939) ou30b07.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK616666) ou23g05.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK616660) ou23f01.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK616647) ou23d02.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK616644) ou23c09.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK616629) ou22h12.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK616611) ou22f07.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK616594) ou22d03.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK616452) ou19d09.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK616443) ou19b07.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK616403) ou18b12.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK616390) ou18a04.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK616385) ou17h05.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK616364) ou17d11.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK616344) ou16h06.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK616219) ou14c02.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK616158) ou12h03.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK616139) ou12d03.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK616127) ou12b05.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK616000) ou09b10.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK615969) ou08e10.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK615966) ou08e05.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK615933) ou07g05.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK615889) ou06f04.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK615878) ou06c08.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK615826) ou05b07.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK615794) ou04c10.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK615792) ou04c07.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK615715) ou02c11.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(CK615707) ou02b03.y1 Mouse lacrimal gland, unamplified: ou ... 46 3.6 1
(BP096248) Chlamydomonas reinhardtii cDNA clone:MXL055c10_r,... 46 3.6 1
(BM394686) 50072-2-5-E04.f.1 Chilcoat/Turkewitz cDNA (large ... 46 3.6 1
(BM393093) 50071-2-5-E04.f.1 Chilcoat/Turkewitz cDNA (small ... 46 3.6 1
(FK932262) EST_lsal_evj_956160 lsalevj mixed_tissue_mixed_st... 46 3.6 1
(FK932261) EST_lsal_evj_936960 lsalevj mixed_tissue_mixed_st... 46 3.6 1
(FK929041) EST_lsal_evj_941439 lsalevj mixed_tissue_mixed_st... 46 3.6 1
(FK929040) EST_lsal_evj_945279 lsalevj mixed_tissue_mixed_st... 46 3.6 1
(FK927023) EST_lsal_evj_951152 lsalevj mixed_tissue_mixed_st... 46 3.6 1
(FK927022) EST_lsal_evj_946928 lsalevj mixed_tissue_mixed_st... 46 3.6 1
(FK924554) EST_lsal_evj_947576 lsalevj mixed_tissue_mixed_st... 46 3.6 1
(FK924553) EST_lsal_evj_938360 lsalevj mixed_tissue_mixed_st... 46 3.6 1
(FK922626) EST_lsal_evj_953497 lsalevj mixed_tissue_mixed_st... 46 3.6 1
(FK922625) EST_lsal_evj_937369 lsalevj mixed_tissue_mixed_st... 46 3.6 1
(FK918666) EST_lsal_evj_949157 lsalevj mixed_tissue_mixed_st... 46 3.6 1
(FK918665) EST_lsal_evj_941861 lsalevj mixed_tissue_mixed_st... 46 3.6 1
(FK915911) EST_lsal_evj_956569 lsalevj mixed_tissue_mixed_st... 46 3.6 1
(FK915910) EST_lsal_evj_932377 lsalevj mixed_tissue_mixed_st... 46 3.6 1
(FK908439) EST_lsal_evj_939622 lsalevj mixed_tissue_mixed_st... 46 3.6 1
(FK908438) EST_lsal_evj_932710 lsalevj mixed_tissue_mixed_st... 46 3.6 1
(FK905933) EST_lsal_evj_960163 lsalevj mixed_tissue_mixed_st... 46 3.6 1
(FK905932) EST_lsal_evj_951331 lsalevj mixed_tissue_mixed_st... 46 3.6 1
(EX484165) EST_lsal_evj_795023 lsalevj mixed_tissue_mixed_st... 46 3.6 1
(EX484164) EST_lsal_evj_794639 lsalevj mixed_tissue_mixed_st... 46 3.6 1
(BH933106) ode06f06.b1 B.oleracea002 Brassica oleracea genom... 40 3.6 2
(AC009147) Homo sapiens chromosome 16 clone RP11-55H18, comp... 34 3.6 6
(BX005011) Zebrafish DNA sequence from clone CH211-59F19 in ... 40 3.7 7
(BX511036) Zebrafish DNA sequence from clone DKEY-279D7 in l... 40 3.7 6
(EY396912) pOP-CEO01650_EST_C_1_pSK_SK CEO (Oil Palm Embryog... 40 4.0 2
(ER455193) 1092963866195 Global-Ocean-Sampling_GS-35-01-01-1... 44 4.2 2
(EY404482) pOP-CNI01863_EST_C_1_pSK_SK CNI (Oil Palm Non-Emb... 40 4.2 2
(BX119902) Zebrafish DNA sequence from clone CH211-137I24 in... 40 4.4 5
(CT027835) Zebrafish DNA sequence from clone CH211-66E18 in ... 42 4.5 3
(EY780763) CR05-C1-103-066-E06-CT.F Mandarin leaf, infected ... 36 4.6 2
(EY404894) pOP-CNI02140_EST_C_1_pSK_SK CNI (Oil Palm Non-Emb... 40 4.8 2
(DY300405) KN0AAQ10YB09RM1 CitNFL Citrus clementina cDNA 5',... 36 4.9 2
(EY398445) pOP-CEO03601_EST_C_1_pSK_SK CEO (Oil Palm Embryog... 40 5.1 2
(BX957351) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 5.4 6
(CU914778) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 5.7 7
(AC124513) Mus musculus BAC clone RP23-448C3 from chromosome... 38 5.8 3
(CE398082) tigr-gss-dog-17000334524914 Dog Library Canis lup... 38 5.8 2
(CT573480) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 5.8 4
(AC120813) Rattus norvegicus clone CH230-66G5, WORKING DRAFT... 38 6.0 6
(CU856021) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 6.0 6
(BX005332) Zebrafish DNA sequence from clone CH211-103F14 in... 40 6.1 5
(EY402742) pOP-CNH05071_EST_C_1_pSK_SK CNH (Oil Palm Non-Emb... 40 6.2 2
(EY401951) pOP-CNH00634_EST_C_1_pSK_SK CNH (Oil Palm Non-Emb... 40 6.3 2
(ER523175) 1093015602351 Global-Ocean-Sampling_GS-35-01-01-1... 38 6.4 3
(AC097155) Rattus norvegicus clone CH230-140A7, *** SEQUENCI... 32 6.5 2
(BX548158) Zebrafish DNA sequence from clone CH211-106G4 in ... 42 6.5 6
(CR388366) Zebrafish DNA sequence from clone DKEY-260B22 in ... 38 6.5 6
(CU633475) Zebrafish DNA sequence from clone CH73-61H9 in li... 40 6.7 3
(EB110230) 000429AFBC007916HT (AFBC) Royal Gala pre-opened f... 38 6.9 2
(EY404214) pOP-CNI01582_EST_C_1_pSK_SK CNI (Oil Palm Non-Emb... 40 7.2 2
(EY405785) pOP-EAP03358_EST_C_1_pBSK_SK EA (Oil Palm Embryoi... 40 7.3 2
(AP000474) Homo sapiens genomic DNA, chromosome 21 clone:RP1... 40 7.8 4
(BX908795) Zebrafish DNA sequence from clone DKEY-92J12 in l... 40 7.9 5
(EY401855) pOP-CNH01094_EST_C_1_pSK_SK CNH (Oil Palm Non-Emb... 40 8.0 2
(EY409737) pOP-EO06823_EST_C_1_pSK_SK EO (Oil Palm Embryoid)... 40 8.0 2
(CR407702) Zebrafish DNA sequence from clone DKEY-171M10 in ... 40 8.0 4
(EY400226) pOP-CNH01715_EST_C_1_pSK_SK CNH (Oil Palm Non-Emb... 40 8.1 2
(EY399462) pOP-CNH00815_EST_C_1_pSK_SK CNH (Oil Palm Non-Emb... 40 8.1 2
(EY403629) pOP-CNI02094_EST_C_1_pSK_SK CNI (Oil Palm Non-Emb... 40 8.3 2
(EY398272) pOP-CEO03031_EST_C_1_pSK_SK CEO (Oil Palm Embryog... 40 8.3 2
(CT030127) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 38 8.3 5
(AM426262) Vitis vinifera contig VV78X023113.11, whole genom... 42 8.4 3
(BX465193) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 8.5 4
(BX510329) Zebrafish DNA sequence from clone RP71-67M5 in li... 40 8.6 5
(EJ726564) 1092959508715 Global-Ocean-Sampling_GS-30-02-01-1... 32 8.6 3
(EY397529) pOP-CEO01390_EST_C_1_pSK_SK CEO (Oil Palm Embryog... 40 8.6 2
(GD213111) G1045P369FL21.T1 Aplysia californica Pooled Norma... 36 8.9 3
(EY404922) pOP-CNI02074_EST_C_1_pSK_SK CNI (Oil Palm Non-Emb... 40 9.0 2
(CR944398) Liver confinement stress library (rtgl) clone rtg... 38 9.0 2
(CK688611) ZF101-P00046-DEPE-F2_P12 GISZF001_ra Danio rerio ... 40 9.1 2
(EY402309) pOP-CNH01258_EST_C_1_pSK_SK CNH (Oil Palm Non-Emb... 40 9.1 2
(EY409615) pOP-EO05687_EST_C_1_pSK_SK EO (Oil Palm Embryoid)... 40 9.1 2
(EY408428) pOP-EN00128_EST_C_1_pSK_SK EN (Oil Palm Embryoid)... 40 9.1 2
(BM057293) 2164-68 hindgut and Malpighian tubule subtracted ... 34 9.1 2
(AQ596985) HS_5207_B2_E06_SP6E RPCI-11 Human Male BAC Librar... 32 9.2 2
(EY398483) pOP-CEO02870_EST_C_1_pSK_SK CEO (Oil Palm Embryog... 40 9.2 2
(DQ077686) Pirata procurvus 16S ribosomal RNA gene, partial ... 34 9.3 2
(DQ077682) Pirata subpiraticus 16S ribosomal RNA gene, parti... 34 9.3 2
(CR318673) Zebrafish DNA sequence from clone CH211-132J7 in ... 36 9.4 4
(AC213165) Equus caballus clone CH241-215E18, WORKING DRAFT ... 40 9.4 2
(EY405162) pOP-CNI02112_EST_C_1_pSK_SK CNI (Oil Palm Non-Emb... 40 9.4 2
(AC176831) Strongylocentrotus purpuratus clone R3-3111P20, W... 40 9.5 5
(CU914491) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 9.6 4
(CT009633) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 9.7 4
(AC174690) Bos taurus clone CH240-379K4, WORKING DRAFT SEQUE... 40 9.8 4
(AC159394) Bos taurus clone CH240-72B19, WORKING DRAFT SEQUE... 42 9.9 5
(EY412997) pOP-EO08383_EST_C_1_pSK_SK EO (Oil Palm Embryoid)... 40 9.9 2

>(BJ435393) Dictyostelium discoideum cDNA clone:ddv27b01, 3' end,
single read.
Length = 689

Score = 632 bits (319), Expect(3) = 0.0
Identities = 319/319 (100%)
Strand = Plus / Minus


Query: 713 ctctcattgaattggggtcaagcagttggtgacatttcaccattacaagatcaaatcgat 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ctctcattgaattggggtcaagcagttggtgacatttcaccattacaagatcaaatcgat 630


Query: 773 tccaatggtacaccagttgaacaattgggtcaaagagcatggttaattcatcgtgcactc 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tccaatggtacaccagttgaacaattgggtcaaagagcatggttaattcatcgtgcactc 570


Query: 833 tttgtctacttttacaacccagaatcacgttcatcattggttgatttactcttggaggat 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tttgtctacttttacaacccagaatcacgttcatcattggttgatttactcttggaggat 510


Query: 893 aaatatttaaatgccattcaaaccacttgtccacacattcttcgttatctcgccgttgcc 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aaatatttaaatgccattcaaaccacttgtccacacattcttcgttatctcgccgttgcc 450


Query: 953 atcattgtcaataaaaagaaacaacaatcaaatgttttccaacgtattttaaatgcactc 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 atcattgtcaataaaaagaaacaacaatcaaatgttttccaacgtattttaaatgcactc 390


Query: 1013 gtacgtgtcgtcgaacaag 1031
|||||||||||||||||||
Sbjct: 389 gtacgtgtcgtcgaacaag 371

Score = 293 bits (148), Expect(3) = 0.0
Identities = 148/148 (100%)
Strand = Plus / Minus


Query: 1164 tccgcttaaattttattattaaaattttaataacacacactcatccatccaccatcatct 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tccgcttaaattttattattaaaattttaataacacacactcatccatccaccatcatct 179


Query: 1224 gaaataataaaatcacgccgcacactccgcacccacatccgcacccacatccgcacccat 1283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gaaataataaaatcacgccgcacactccgcacccacatccgcacccacatccgcacccat 119


Query: 1284 cactttcacatttattcattcattcatt 1311
||||||||||||||||||||||||||||
Sbjct: 118 cactttcacatttattcattcattcatt 91

Score = 63.9 bits (32), Expect(3) = 0.0
Identities = 32/32 (100%)
Strand = Plus / Minus


Query: 1355 caaatgatactatttgtgatcgatttttatat 1386
||||||||||||||||||||||||||||||||
Sbjct: 47 caaatgatactatttgtgatcgatttttatat 16

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,364,045,889
Number of extensions: 86767279
Number of successful extensions: 8055168
Number of sequences better than 10.0: 344
Length of query: 1401
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1377
Effective length of database: 96,409,374,237
Effective search space: 132755708324349
Effective search space used: 132755708324349
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.16
Homology vs Protein
Query= Contig-U15449-1 (Contig-U15449-1Q) /CSM_Contig/Contig-U15449-1Q.Seq.d
(1401 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q54CC5) RecName: Full=Eukaryotic translation initiation factor ... 371 e-139
BT074531_1(BT074531|pid:none) Osmerus mordax clone omor-eva-517-... 142 3e-32
CR761387_1(CR761387|pid:none) Xenopus tropicalis finished cDNA, ... 141 5e-32
(Q05AY2) RecName: Full=Eukaryotic translation initiation factor ... 141 5e-32
AK313186_1(AK313186|pid:none) Homo sapiens cDNA, FLJ93685, highl... 141 5e-32
(Q6P7L9) RecName: Full=Eukaryotic translation initiation factor ... 141 5e-32
AK011436_1(AK011436|pid:none) Mus musculus 10 days embryo whole ... 141 5e-32
CR859743_1(CR859743|pid:none) Pongo abelii mRNA; cDNA DKFZp468O0... 141 5e-32
AY893445_1(AY893445|pid:none) Synthetic construct Homo sapiens c... 141 5e-32
(Q3T102) RecName: Full=Eukaryotic translation initiation factor ... 141 5e-32
(P60228) RecName: Full=Eukaryotic translation initiation factor ... 141 5e-32
CR457029_1(CR457029|pid:none) Homo sapiens full open reading fra... 141 6e-32
BC092025_1(BC092025|pid:none) Xenopus laevis Eukaryotic translat... 141 6e-32
AF162775_1(AF162775|pid:none) Xenopus laevis Int-6 protein mRNA,... 141 6e-32
BT082880_1(BT082880|pid:none) Anoplopoma fimbria clone afim-evh-... 140 8e-32
(Q1LUA8) RecName: Full=Eukaryotic translation initiation factor ... 140 1e-31
BC017887_1(BC017887|pid:none) Homo sapiens eukaryotic translatio... 140 1e-31
(A7RWP6) RecName: Full=Eukaryotic translation initiation factor ... 140 1e-31
U94174_1(U94174|pid:none) Homo sapiens mammary tumor-associated ... 138 6e-31
AY648778_1(AY648778|pid:none) Danio rerio eukaryotic translation... 136 2e-30
BT074075_1(BT074075|pid:none) Oncorhynchus mykiss clone omyk-evo... 135 3e-30
BX957242_2(BX957242|pid:none) Zebrafish DNA sequence from clone ... 135 5e-30
AP005197_13(AP005197|pid:none) Oryza sativa Japonica Group genom... 133 1e-29
EU967718_1(EU967718|pid:none) Zea mays clone 305571 eukaryotic t... 130 1e-28
AF285832_1(AF285832|pid:none) Arabidopsis thaliana eukaryotic in... 129 3e-28
AP003842_18(AP003842|pid:none) Oryza sativa Japonica Group genom... 129 3e-28
DQ989627_6(DQ989627|pid:none) Oryza sativa (japonica cultivar-gr... 129 3e-28
AF255679_1(AF255679|pid:none) Arabidopsis thaliana eIF3e mRNA, c... 129 3e-28
EF676716_1(EF676716|pid:none) Picea sitchensis clone WS02749_G10... 128 6e-28
(Q5B973) RecName: Full=Eukaryotic translation initiation factor ... 128 6e-28
BT035325_1(BT035325|pid:none) Zea mays full-length cDNA clone ZM... 127 7e-28
(A1CKN7) RecName: Full=Eukaryotic translation initiation factor ... 124 8e-27
(Q4WY08) RecName: Full=Eukaryotic translation initiation factor ... 124 8e-27
(B4H5N1) RecName: Full=Eukaryotic translation initiation factor ... 124 1e-26
(B4LG58) RecName: Full=Eukaryotic translation initiation factor ... 124 1e-26
(Q29EX2) RecName: Full=Eukaryotic translation initiation factor ... 124 1e-26
(B3NDH5) RecName: Full=Eukaryotic translation initiation factor ... 124 1e-26
(B4IXG1) RecName: Full=Eukaryotic translation initiation factor ... 124 1e-26
(B4QMY7) RecName: Full=Eukaryotic translation initiation factor ... 122 2e-26
AY398340_1(AY398340|pid:none) Danio rerio clone RK139A2H06 eukar... 122 2e-26
(Q2F5R8) RecName: Full=Eukaryotic translation initiation factor ... 122 2e-26
EF070481_1(EF070481|pid:none) Maconellicoccus hirsutus clone WHM... 122 3e-26
CP001327_487(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 122 3e-26
(Q1E170) RecName: Full=Eukaryotic translation initiation factor ... 121 7e-26
(B0WAM5) RecName: Full=Eukaryotic translation initiation factor ... 120 9e-26
(Q0U0X1) RecName: Full=Eukaryotic translation initiation factor ... 120 2e-25
AM503706_1(AM503706|pid:none) Lathraea squamaria partial EIF3E g... 120 2e-25
(Q0CNR3) RecName: Full=Eukaryotic translation initiation factor ... 119 2e-25
(Q7QIL8) RecName: Full=Eukaryotic translation initiation factor ... 119 3e-25
(Q1HQY6) RecName: Full=Eukaryotic translation initiation factor ... 117 8e-25
(B4HK67) RecName: Full=Eukaryotic translation initiation factor ... 117 1e-24
(B4MYA1) RecName: Full=Eukaryotic translation initiation factor ... 117 1e-24
BT078763_1(BT078763|pid:none) Lepeophtheirus salmonis Pacific fo... 116 2e-24
AM503707_1(AM503707|pid:none) Linaria alpina partial EIF3E gene ... 115 5e-24
AM503705_1(AM503705|pid:none) Lamium purpureum partial EIF3E gen... 113 1e-23
(O61820) RecName: Full=Eukaryotic translation initiation factor ... 110 9e-23
AM889300_1(AM889300|pid:none) Calepina irregularis partial eif3E... 110 1e-22
AM889303_1(AM889303|pid:none) Rorippa austriaca partial eif3E ge... 110 1e-22
AM503698_1(AM503698|pid:none) Aesculus hippocastanum partial EIF... 110 1e-22
AM889295_1(AM889295|pid:none) Erysimum cheiri partial eif3E gene... 110 1e-22
AM889302_1(AM889302|pid:none) Malcolmia maritima partial eif3E g... 109 2e-22
AM503715_1(AM503715|pid:none) Melampyrum italicum partial EIF3E ... 108 4e-22
AM503711_1(AM503711|pid:none) Melampyrum arvense partial EIF3E g... 108 4e-22
AM503709_1(AM503709|pid:none) Melampyrum arvense partial EIF3E g... 108 4e-22
AM503720_1(AM503720|pid:none) Melampyrum pratense partial EIF3E ... 108 5e-22
AY122062_1(AY122062|pid:none) Drosophila melanogaster AT01736 fu... 108 5e-22
FN314005_1(FN314005|pid:none) Schistosoma japonicum isolate Anhu... 108 6e-22
AM889298_1(AM889298|pid:none) Cardamine hirsuta partial eif3E ge... 108 6e-22
AM503717_1(AM503717|pid:none) Melampyrum italicum partial EIF3E ... 108 6e-22
FN318014_1(FN318014|pid:none) Schistosoma japonicum isolate Anhu... 108 6e-22
AF117648_1(AF117648|pid:none) Schizosaccharomyces pombe Int6 (in... 107 1e-21
(O94513) RecName: Full=Eukaryotic translation initiation factor ... 107 1e-21
AM503730_1(AM503730|pid:none) Physalis alkekengi partial EIF3E g... 107 1e-21
AM889296_1(AM889296|pid:none) Cardamine flexuosa partial eif3E g... 107 1e-21
FN357907_5(FN357907|pid:none) Schistosoma mansoni genome sequenc... 106 2e-21
AM889291_1(AM889291|pid:none) Alyssum montanum partial eif3E gen... 106 2e-21
AM889292_1(AM889292|pid:none) Alyssum montanum partial eif3E gen... 106 2e-21
AM503724_1(AM503724|pid:none) Melampyrum sylvaticum partial EIF3... 105 4e-21
AM503723_1(AM503723|pid:none) Melampyrum sp. JW_13_02_07 partial... 105 4e-21
EU966824_1(EU966824|pid:none) Zea mays clone 297609 hypothetical... 105 5e-21
AM889288_1(AM889288|pid:none) Aethionema grandiflorum partial ei... 104 7e-21
(Q7S519) RecName: Full=Eukaryotic translation initiation factor ... 102 3e-20
(Q2HBQ2) RecName: Full=Eukaryotic translation initiation factor ... 102 3e-20
AY811384_1(AY811384|pid:none) Schistosoma japonicum SJCHGC01585 ... 100 2e-19
(Q4PHN4) RecName: Full=Eukaryotic translation initiation factor ... 98 8e-19
AM503734_1(AM503734|pid:none) Scrophularia canina partial EIF3E ... 98 8e-19
AL137080_14(AL137080|pid:none) Arabidopsis thaliana DNA chromoso... 93 2e-17
AM503713_1(AM503713|pid:none) Melampyrum cristatum partial EIF3E... 92 3e-17
AM503719_1(AM503719|pid:none) Melampyrum pratense partial EIF3E ... 92 5e-17
AM503725_1(AM503725|pid:none) Melampyrum sylvaticum partial EIF3... 92 6e-17
AM503728_1(AM503728|pid:none) Melampyrum velebiticum partial EIF... 84 1e-14
AM503733_1(AM503733|pid:none) Rhinanthus alectorolophus partial ... 84 1e-14
AM503714_1(AM503714|pid:none) Melampyrum cristatum partial EIF3E... 83 2e-14
AM494965_251(AM494965|pid:none) Leishmania braziliensis chromoso... 70 2e-10
AM502246_242(AM502246|pid:none) Leishmania infantum chromosome 28. 70 2e-10
CT005266_239(CT005266|pid:none) Leishmania major strain Friedlin... 70 2e-10
BT051932_1(BT051932|pid:none) Medicago truncatula clone MTYF5_F6... 67 1e-09
AY231747_1(AY231747|pid:none) Drosophila yakuba clone yak-em_Int... 55 8e-06
BT052305_1(BT052305|pid:none) Medicago truncatula clone MTYF9_FA... 54 1e-05
BT037731_1(BT037731|pid:none) Zea mays full-length cDNA clone ZM... 51 9e-05
DQ407907_1(DQ407907|pid:none) Ictalurus punctatus clone SCCG01R ... 51 9e-05
CR940348_583(CR940348|pid:none) Theileria annulata strain Ankara... 38 1.0
AP007171_218(AP007171|pid:none) Aspergillus oryzae RIB40 genomic... 35 5.0
CP001291_2163(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 35 5.0
AC183409_24(AC183409|pid:none) Asparagus officinalis clone B1-K2... 35 5.0
AY341999_1(AY341999|pid:none) Drosophila miranda CG9677-like pro... 35 5.0

>(Q54CC5) RecName: Full=Eukaryotic translation initiation factor 3
subunit E; Short=eIF3e; AltName: Full=Eukaryotic
translation initiation factor 3 subunit 6;
Length = 525

Score = 371 bits (952), Expect(2) = e-139
Identities = 199/257 (77%), Positives = 199/257 (77%)
Frame = +2

Query: 263 KKQELVGELNKLKEQCSFVTQYIESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 442
KKQELVGELNKLKEQCSFVTQYIES
Sbjct: 70 KKQELVGELNKLKEQCSFVTQYIESKKQQKEQQKELKEQQKEQQKEKDTDKTTPTTTDET 129

Query: 443 XXXXXXXXXXXXXXXXXXXXXXXVIPFSQLLEKITPEILDSIYRFSKLLFEIGQYGSARE 622
VIPFSQLLEKITPEILDSIYRFSKLLFEIGQYGSARE
Sbjct: 130 TTTTTTAPTTTTTTTTTTITPITVIPFSQLLEKITPEILDSIYRFSKLLFEIGQYGSARE 189

Query: 623 HLEIFLQLSPTHQNKDKRLSALWGILESDILSLNWGQAVGDISPLQDQIDSNGTPVEQLG 802
HLEIFLQLSPTHQNKDKRLSALWGILESDILSLNWGQAVGDISPLQDQIDSNGTPVEQLG
Sbjct: 190 HLEIFLQLSPTHQNKDKRLSALWGILESDILSLNWGQAVGDISPLQDQIDSNGTPVEQLG 249

Query: 803 QRAWLIHRALFVYFYNPESRSSLVDLLLEDKYLNAIQTTCPHILRYLAVAIIVNKKKQQS 982
QRAWLIHRALFVYFYNPESRSSLVDLLLEDKYLNAIQTTCPHILRYLAVAIIVNKKKQQS
Sbjct: 250 QRAWLIHRALFVYFYNPESRSSLVDLLLEDKYLNAIQTTCPHILRYLAVAIIVNKKKQQS 309

Query: 983 NVFQRILNALVRVVEQE 1033
NVFQRILNALVRVVEQE
Sbjct: 310 NVFQRILNALVRVVEQE 326

Score = 149 bits (375), Expect(2) = e-139
Identities = 71/74 (95%), Positives = 72/74 (97%)
Frame = +1

Query: 55 MEYDLTKQICSFLDAHMMLPLINYLKDTQQYQENEINKAMADILSQTGCCDYAINAYESI 234
MEYDLTKQICSFLDAHMMLPLINYLKDTQQYQENEINKAMADILSQTGCCDYAINAYESI
Sbjct: 1 MEYDLTKQICSFLDAHMMLPLINYLKDTQQYQENEINKAMADILSQTGCCDYAINAYESI 60

Query: 235 GRDTAPLQAKKTRI 276
GRDTAPLQAKK +
Sbjct: 61 GRDTAPLQAKKQEL 74

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,746,756,043
Number of extensions: 32255858
Number of successful extensions: 79782
Number of sequences better than 10.0: 106
Number of HSP's gapped: 79571
Number of HSP's successfully gapped: 169
Length of query: 467
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 335
Effective length of database: 623,955,076
Effective search space: 209024950460
Effective search space used: 209024950460
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.52 gvh: 0.35 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.37 mip: 0.03
nuc: 0.03 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
28.0 %: cytoplasmic
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for Contig-U15449-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 5
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0