Contig-U15442-1
Contig ID Contig-U15442-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15442-1 (Contig-U15442-1Q) /CSM_Contig/Contig-U15442-1Q.Seq.d
CTTTTTTATCTGTTTCATTAATAAAAAAAAAGTAAATTAAATCAAATAAA
TAAATATATAGATATAAAGATATAAAAAAAAAAAAAAAAAAAAAAAAAAT
GGATCAAAGTGAAATTGTAAAATTAAATAAAATAAAAGCAAAGAGTGCAT
GGTTAAAAAAAGGTGCAGCAAGAAGTAGTGCAATTTCATGTGGTCTTGGT
ATAGGTATTGGTTTTGGTATTGCTTTATTCATTTTCTCACAAACTTTAAG
AGGTTTTGGTATTTATTTAGCAGGTTTATGTACTTTCCATATGTGGGAAT
GGAATATATTTGGGTTACAATGTATCATCCTGATAAATTATCAAGTAAAT
CATTTTTATTAAATCATAGTCCACAGTTTAATATGGCATTATTAATTAGT
TTTATTGAGTTTTGGATTGAATGGTATTTCTTCCCATCATTGAAAACATT
CTCATTATGGTGGGTAGGTGCCATTTGTATGGTATTCGGTCAAATTGTTA
GATCGGTTGCAATGGATACAGCAGGTTCAAATTTCACTCATTTGGTTCAA
GAAGAAAAGAGAGATGATCATGTTTTAGTTACAAATGGTATCTATCAATA
TATGAGACATCCATCTTATTTTGGTTGGTTTGTTTGGTCAGTATCAACTC
AAGTCATCCTTATGAATCCAATTAGTATTATTGGCTTTGGTTGGGCTTCT
TGGAGTTTCTTTTCTCAAAGAATTGAAAATGAAGAAGATTATTTAATTCA
ATTTTTTGGAAAATCTTATAAAGATTATAAAAAATCAGTTTGGTCTGGTA
TTCCAGGTATTCATTGAAAAATTGGAACTATAGTCTTAATTTAATAAATT
TATAATAAAAAAAATATAATAAATAAATAAATAAATAAATAAACGATTTT
AGAAATGTATTTTTATAACAAAAAAAAAAAAAAAAAAAAAAAAA

Gap no gap
Contig length 944
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 3628376
End point 3629319
Strand (PLUS/MINUS) PLUS
Number of clones 5
Number of EST 5
Link to clone list U15442
List of clone(s)

est1=SSM580E,1,940
est2=SSH464F,25,409
est3=SSK674F,25,621
est4=SSC513F,48,647
est5=SSB615Z,462,944
Translated Amino Acid sequence
fficfinkkkvn*ik*ini*i*rykkkkkkkkngsk*nckik*nkskecmvkkrcskk*C
NFMWSWYRYWFWYCFIHFLTNFKRFWYLFSRFMYFPYVGMEYIWVTMYHPDKLSSKSFLL
NHSPQFNMALLISFIEFWIEWYFFPSLKTFSLWWVGAICMVFGQIVRSVAMDTAGSNFTH
LVQEEKRDDHVLVTNGIYQYMRHPSYFGWFVWSVSTQVILMNPISIIGFGWASWSFFSQR
IENEEDYLIQFFGKSYKDYKKSVWSGIPGIH*kigtivli**iynkkniink*ink*til
emyfynkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
lfylfh**kksklnqinkyidiki*kkkkkkkkwikvkl*n*ik*kqrvhg*kkvqqevv
qfhvvlv*vlvlvllysfshkl*evlvfi*qvyvlsicgngiylgynvss**iik*iifi
ks*stv*ygiin*fy*vld*mvflpiienilimvgrchlygirsnc*igcngysrfkfhs
fgsrrker*scfsykwylsiyetsilfwlvclvsinsshpyesn*yywlwlgfleflfsk
n*k*rrlfnsifwkil*rl*kislvwysryslknwnyslnlinl**kkynk*ink*indf
rnvfl*qkkkkkkk


Frame B:
fficfinkkkvn*ik*ini*i*rykkkkkkkkngsk*nckik*nkskecmvkkrcskk*C
NFMWSWYRYWFWYCFIHFLTNFKRFWYLFSRFMYFPYVGMEYIWVTMYHPDKLSSKSFLL
NHSPQFNMALLISFIEFWIEWYFFPSLKTFSLWWVGAICMVFGQIVRSVAMDTAGSNFTH
LVQEEKRDDHVLVTNGIYQYMRHPSYFGWFVWSVSTQVILMNPISIIGFGWASWSFFSQR
IENEEDYLIQFFGKSYKDYKKSVWSGIPGIH*kigtivli**iynkkniink*ink*til
emyfynkkkkkkkk


Frame C:
flsvslikkk*iksnk*iyrykdikkkkkkkkmdqseivklnkikaksawlkkgaarssa
iscglgigigfgialfifsqtlrgfgiylaglctfhmwewnifglqciilinyqvnhfy*
iivhsliwhy*lvllsfglngisshh*khshygg*vpfvwysvklldrlqwiqqvqisli
wfkkkremimf*lqmvsini*dihlilvglfgqyqlkssl*iqlvllalvgllgvsflke
lkmkkii*fnflenlikiiknqfglvfqvfieklel*s*fnkfiikki**ink*inkrf*
kcifitkkkkkkkk


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15442-1 (Contig-U15442-1Q)
/CSM_Contig/Contig-U15442-1Q.Seq.d
(944 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15442-1 (Contig-U15442-1Q) /CSM_Contig/Conti... 1336 0.0
Contig-U05266-1 (Contig-U05266-1Q) /CSM_Contig/Conti... 924 0.0
Contig-U00438-1 (Contig-U00438-1Q) /CSM_Contig/Conti... 50 6e-06
Contig-U11865-1 (Contig-U11865-1Q) /CSM_Contig/Conti... 48 2e-05
Contig-U06612-1 (Contig-U06612-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U11537-1 (Contig-U11537-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U11124-1 (Contig-U11124-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U12254-1 (Contig-U12254-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U14383-1 (Contig-U14383-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U13964-1 (Contig-U13964-1Q) /CSM_Contig/Conti... 40 0.006

>Contig-U15442-1 (Contig-U15442-1Q) /CSM_Contig/Contig-U15442-1Q.Seq.d
Length = 944

Score = 1336 bits (674), Expect = 0.0
Identities = 674/674 (100%)
Strand = Plus / Plus


Query: 162 ggtgcagcaagaagtagtgcaatttcatgtggtcttggtataggtattggttttggtatt 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 ggtgcagcaagaagtagtgcaatttcatgtggtcttggtataggtattggttttggtatt 221


Query: 222 gctttattcattttctcacaaactttaagaggttttggtatttatttagcaggtttatgt 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 gctttattcattttctcacaaactttaagaggttttggtatttatttagcaggtttatgt 281


Query: 282 actttccatatgtgggaatggaatatatttgggttacaatgtatcatcctgataaattat 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 actttccatatgtgggaatggaatatatttgggttacaatgtatcatcctgataaattat 341


Query: 342 caagtaaatcatttttattaaatcatagtccacagtttaatatggcattattaattagtt 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 caagtaaatcatttttattaaatcatagtccacagtttaatatggcattattaattagtt 401


Query: 402 ttattgagttttggattgaatggtatttcttcccatcattgaaaacattctcattatggt 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ttattgagttttggattgaatggtatttcttcccatcattgaaaacattctcattatggt 461


Query: 462 gggtaggtgccatttgtatggtattcggtcaaattgttagatcggttgcaatggatacag 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gggtaggtgccatttgtatggtattcggtcaaattgttagatcggttgcaatggatacag 521


Query: 522 caggttcaaatttcactcatttggttcaagaagaaaagagagatgatcatgttttagtta 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 caggttcaaatttcactcatttggttcaagaagaaaagagagatgatcatgttttagtta 581


Query: 582 caaatggtatctatcaatatatgagacatccatcttattttggttggtttgtttggtcag 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 caaatggtatctatcaatatatgagacatccatcttattttggttggtttgtttggtcag 641


Query: 642 tatcaactcaagtcatccttatgaatccaattagtattattggctttggttgggcttctt 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tatcaactcaagtcatccttatgaatccaattagtattattggctttggttgggcttctt 701


Query: 702 ggagtttcttttctcaaagaattgaaaatgaagaagattatttaattcaattttttggaa 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ggagtttcttttctcaaagaattgaaaatgaagaagattatttaattcaattttttggaa 761


Query: 762 aatcttataaagattataaaaaatcagtttggtctggtattccaggtattcattgaaaaa 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 aatcttataaagattataaaaaatcagtttggtctggtattccaggtattcattgaaaaa 821


Query: 822 ttggaactatagtc 835
||||||||||||||
Sbjct: 822 ttggaactatagtc 835


Score = 91.7 bits (46), Expect = 2e-18
Identities = 64/73 (87%)
Strand = Plus / Plus


Query: 1 cttttttatctgtttcattaatnnnnnnnnngtaaattaaatcaaataaataaatatata 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 cttttttatctgtttcattaataaaaaaaaagtaaattaaatcaaataaataaatatata 60


Query: 61 gatataaagatat 73
|||||||||||||
Sbjct: 61 gatataaagatat 73


Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus


Query: 894 cgattttagaaatgtatttttataac 919
||||||||||||||||||||||||||
Sbjct: 894 cgattttagaaatgtatttttataac 919


>Contig-U05266-1 (Contig-U05266-1Q) /CSM_Contig/Contig-U05266-1Q.Seq.d
Length = 582

Score = 924 bits (466), Expect = 0.0
Identities = 466/466 (100%)
Strand = Plus / Plus


Query: 370 tccacagtttaatatggcattattaattagttttattgagttttggattgaatggtattt 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35 tccacagtttaatatggcattattaattagttttattgagttttggattgaatggtattt 94


Query: 430 cttcccatcattgaaaacattctcattatggtgggtaggtgccatttgtatggtattcgg 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 cttcccatcattgaaaacattctcattatggtgggtaggtgccatttgtatggtattcgg 154


Query: 490 tcaaattgttagatcggttgcaatggatacagcaggttcaaatttcactcatttggttca 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 tcaaattgttagatcggttgcaatggatacagcaggttcaaatttcactcatttggttca 214


Query: 550 agaagaaaagagagatgatcatgttttagttacaaatggtatctatcaatatatgagaca 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 agaagaaaagagagatgatcatgttttagttacaaatggtatctatcaatatatgagaca 274


Query: 610 tccatcttattttggttggtttgtttggtcagtatcaactcaagtcatccttatgaatcc 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tccatcttattttggttggtttgtttggtcagtatcaactcaagtcatccttatgaatcc 334


Query: 670 aattagtattattggctttggttgggcttcttggagtttcttttctcaaagaattgaaaa 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aattagtattattggctttggttgggcttcttggagtttcttttctcaaagaattgaaaa 394


Query: 730 tgaagaagattatttaattcaattttttggaaaatcttataaagattataaaaaatcagt 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tgaagaagattatttaattcaattttttggaaaatcttataaagattataaaaaatcagt 454


Query: 790 ttggtctggtattccaggtattcattgaaaaattggaactatagtc 835
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ttggtctggtattccaggtattcattgaaaaattggaactatagtc 500


Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus


Query: 317 acaatgtatcatcctgataaattatcaagtaaat 350
||||||||||||||||||||||||||||||||||
Sbjct: 1 acaatgtatcatcctgataaattatcaagtaaat 34


>Contig-U00438-1 (Contig-U00438-1Q) /CSM_Contig/Contig-U00438-1Q.Seq.d
Length = 1266

Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus


Query: 44 aaataaataaatatatagatataaa 68
|||||||||||||||||||||||||
Sbjct: 53 aaataaataaatatatagatataaa 77


Score = 36.2 bits (18), Expect = 0.095
Identities = 27/30 (90%)
Strand = Plus / Plus


Query: 44 aaataaataaatatatagatataaagatat 73
||||||||||||| ||| ||||| ||||||
Sbjct: 45 aaataaataaataaataaatatatagatat 74


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,271
Number of Sequences: 8402
Number of extensions: 22271
Number of successful extensions: 4491
Number of sequences better than 10.0: 445
length of query: 944
length of database: 8,075,542
effective HSP length: 16
effective length of query: 928
effective length of database: 7,941,110
effective search space: 7369350080
effective search space used: 7369350080
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.26
Homology vs DNA
Query= Contig-U15442-1 (Contig-U15442-1Q) /CSM_Contig/Contig-U15442-1Q.Seq.d
(944 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AF487784) Dictyostelium discoideum prenyl cysteine carboxyl... 963 0.0 5
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 963 0.0 5
(C89921) Dictyostelium discoideum slug cDNA, clone SSG626. 926 0.0 2
(C93123) Dictyostelium discoideum slug cDNA, clone SSM580. 607 0.0 3
(AU037211) Dictyostelium discoideum slug cDNA, clone SSB615. 676 0.0 2
(AU074957) Dictyostelium discoideum slug cDNA, clone SSM580. 270 7e-70 2
(AU071781) Dictyostelium discoideum slug cDNA, clone SSC513. 250 8e-62 1
(AU074432) Dictyostelium discoideum slug cDNA, clone SSK674. 206 1e-48 1
(AU073528) Dictyostelium discoideum slug cDNA, clone SSH464. 206 1e-48 1
(FG205715) Aabr02439 Antheraea assama fifth instar larval br... 56 0.002 1
(BH157525) ENTRL88TF Entamoeba histolytica Sheared DNA Entam... 54 0.010 1
(BH148029) ENTQK39TF Entamoeba histolytica Sheared DNA Entam... 54 0.010 1
(BH147143) ENTQQ13TF Entamoeba histolytica Sheared DNA Entam... 54 0.010 1
(AZ684469) ENTMT16TR Entamoeba histolytica Sheared DNA Entam... 54 0.010 1
(AZ535765) ENTBE79TF Entamoeba histolytica Sheared DNA Entam... 54 0.010 1
(AC011218) Homo sapiens clone RP11-8D1, WORKING DRAFT SEQUEN... 42 0.013 5
(AL035258) Human DNA sequence from clone RP5-1097P24 on chro... 38 0.037 5
(AX323841) Sequence 329 from Patent WO0192565. 40 0.074 3
(CT956021) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.27 5
(AC152317) Bos taurus clone CH240-2K6, WORKING DRAFT SEQUENC... 34 0.34 2
(AL118502) Human DNA sequence from clone RP11-371L19 on chro... 48 0.60 1
(DE470003) Bombyx mori genomic DNA, Fosmid clone:GBMFno69_o1... 48 0.60 1
(CZ819633) OC__Ba0197H15.r OC__Ba Oryza coarctata genomic cl... 48 0.60 1
(CZ810634) OC__Ba0185F21.r OC__Ba Oryza coarctata genomic cl... 48 0.60 1
(CZ808296) OC__Ba0182D11.f OC__Ba Oryza coarctata genomic cl... 48 0.60 1
(CZ793691) OC__Ba0161P19.r OC__Ba Oryza coarctata genomic cl... 48 0.60 1
(FB571382) Sequence 249 from Patent EP1865317. 36 0.72 7
(AP001137) Homo sapiens genomic DNA, chromosome 21q21.1-q21.... 42 1.2 6
(AC123134) Rattus norvegicus clone CH230-163I11, *** SEQUENC... 44 1.6 4
(AC021466) Homo sapiens clone RP11-351F22, WORKING DRAFT SEQ... 42 2.2 4
(BX914215) Zebrafish DNA sequence from clone DKEY-245F7 in l... 46 2.4 1
(AC121919) Mus musculus BAC clone RP24-195I15 from chromosom... 46 2.4 1
(CR937025) Pan troglodytes chromosome 11 BAC PTB-027O15. 46 2.4 1
(AL662879) Homo sapiens chromosome 9 BAC RP11-279F22. 46 2.4 1
(AL590547) Human DNA sequence from clone RP11-367A10 on chro... 46 2.4 1
(AL390882) Human DNA sequence from clone RP11-113D19 on chro... 46 2.4 1
(AC027498) Homo sapiens chromosome 1 clone RP11-656L11 map 1... 46 2.4 1
(CT573082) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.4 1
(CR812778) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 46 2.4 1
(BX927380) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 46 2.4 1
(AC219220) Solanum lycopersicum chromosome 6 clone C06SLm001... 46 2.4 1
(AC022922) Homo sapiens chromosome 1 clone RP11-230F23 map 1... 46 2.4 1
(AK163148) Mus musculus 7 days neonate cerebellum cDNA, RIKE... 46 2.4 1
(ER794042) PPTAS55TR Solanum tuberosum RHPOTKEY BAC ends Sol... 46 2.4 1
(AM683594) Entamoeba terrapinae GSS, clone terra255g10.q1k. 46 2.4 1
(EJ194784) 1092344227189 Global-Ocean-Sampling_GS-27-01-01-1... 46 2.4 1
(CJ263254) Mus musculus cDNA, RIKEN full-length enriched lib... 46 2.4 1
(CJ262640) Mus musculus cDNA, RIKEN full-length enriched lib... 46 2.4 1
(CJ260879) Mus musculus adult male brain cDNA, RIKEN full-le... 46 2.4 1
(CJ258615) Mus musculus adult male brain cDNA, RIKEN full-le... 46 2.4 1
(CJ257250) Mus musculus adult male brain cDNA, RIKEN full-le... 46 2.4 1
(CJ255784) Mus musculus adult male brain cDNA, RIKEN full-le... 46 2.4 1
(CJ254857) Mus musculus adult male brain cDNA, RIKEN full-le... 46 2.4 1
(CJ239743) Mus musculus 15 days embryo brain cDNA, RIKEN ful... 46 2.4 1
(CJ239339) Mus musculus 15 days embryo brain cDNA, RIKEN ful... 46 2.4 1
(CJ239197) Mus musculus 15 days embryo brain cDNA, RIKEN ful... 46 2.4 1
(AI593324) vu20e06.x1 Barstead mouse myotubes MPLRB5 Mus mus... 46 2.4 1
(AI467224) vd79c11.x1 Soares mouse NbMH Mus musculus cDNA cl... 46 2.4 1
(BY408603) Mus musculus TIB-55 BB88 cDNA, RIKEN full-length ... 46 2.4 1
(BM933532) UI-M-BZ1-bft-a-17-0-UI.r2 NIH_BMAP_MHI2_S1 Mus mu... 46 2.4 1
(BE990013) UI-M-BZ1-bft-n-04-0-UI.s1 NIH_BMAP_MHI2_S1 Mus mu... 46 2.4 1
(BE989727) UI-M-BZ1-bft-a-17-0-UI.s1 NIH_BMAP_MHI2_S1 Mus mu... 46 2.4 1
(AA403816) vd79c11.r1 Soares mouse NbMH Mus musculus cDNA cl... 46 2.4 1
(CP000867) Methanococcus maripaludis C6, complete genome. 46 2.4 1
(AC206101) MACACA MULATTA BAC clone CH250-104F6 from chromos... 36 2.7 6
(ER507400) 1093015427825 Global-Ocean-Sampling_GS-35-01-01-1... 36 2.8 3
(AP004946) Lotus japonicus genomic DNA, chromosome 4, clone:... 36 2.9 8
(AC097488) Homo sapiens BAC clone RP11-218C23 from 4, comple... 42 2.9 5
(EJ059076) 1095456053114 Global-Ocean-Sampling_GS-26-01-01-1... 36 3.2 3
(AC121246) Medicago truncatula clone mth2-35m8, complete seq... 40 3.6 2
(BS000070) Pan troglodytes chromosome 22 clone:RP43-073J16, ... 42 3.7 4
(AC127750) Rattus norvegicus clone CH230-29B24, *** SEQUENCI... 34 4.4 2
(AP003729) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 38 4.4 4
(AC096625) Mus musculus strain C57BL/6J clone rp23-388i7 map... 32 4.5 2
(AC163613) Mus musculus BAC clone RP24-150N2 from chromosome... 32 4.6 2
(AC093592) Homo sapiens BAC clone RP11-50L21 from 4, complet... 40 5.0 2
(AX346407) Sequence 1478 from Patent WO0200928. 40 5.3 3
(AC114261) Dictyostelium discoideum chromosome 2 map 126059-... 40 5.6 4
(AC091600) Homo sapiens chromosome UNK clone RP11-321K15, WO... 38 5.6 6
(EC823344) SME00008836 esmbsro2 Sawyeria marylandensis cDNA,... 38 5.7 2
(BZ443606) BONRL64TR BO_1.6_2_KB_tot Brassica oleracea genom... 34 6.0 2
(BH432499) BOGRF30TF BOGR Brassica oleracea genomic clone BO... 32 6.0 2
(FB571326) Sequence 193 from Patent EP1865317. 36 6.2 7
(BZ274515) CH230-391N6.TV CHORI-230 Segment 2 Rattus norvegi... 34 6.2 2
(DU460707) 1098421093631 CHORI-243 Ovis aries genomic clone ... 34 6.3 2
(AC021689) Homo sapiens clone RP11-21L15, WORKING DRAFT SEQU... 42 6.3 4
(AC169076) Medicago truncatula chromosome 7 BAC clone mth2-1... 32 6.8 6
(AP001681) Homo sapiens genomic DNA, chromosome 21q, section... 42 7.1 7
(AC121542) Mus musculus chromosome 15, clone RP24-137J5, com... 44 7.2 5
(AM460399) Vitis vinifera contig VV78X127544.9, whole genome... 40 7.4 5
(AC192007) Pan troglodytes BAC clone CH251-509F23 from chrom... 44 7.5 3
(CZ931729) 249748 Tomato EcoRI BAC Library Solanum lycopersi... 42 7.6 2
(AC024593) Homo sapiens chromosome X clone bac 226-o-8 map X... 38 7.9 8
(EK096956) 1092962042216 Global-Ocean-Sampling_GS-31-01-01-1... 36 8.0 2
(CT574573) Zebrafish DNA sequence from clone CH211-241E20 in... 44 9.4 1
(AC141638) Mus musculus BAC clone RP23-415K1 from chromosome... 44 9.4 1
(AC074047) Mus musculus 7 BAC RP23-377F9 (Roswell Park Cance... 44 9.4 1
(AC194552) Pan troglodytes BAC clone CH251-441L20 from chrom... 44 9.4 1
(AM445621) Vitis vinifera contig VV78X068865.3, whole genome... 44 9.4 1
(Z98255) Human DNA sequence from clone RP1-279N11 on chromos... 44 9.4 1
(AC004384) Human Chromosome X clone bWXD531, complete sequence. 44 9.4 1
(AC158090) Bos taurus clone CH240-48D2, WORKING DRAFT SEQUEN... 44 9.4 1
(AC074048) Mus musculus chromosome 7 clone RP23-18J2, WORKIN... 44 9.4 1
(CU469051) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.4 1
(AC207834) Saimiri boliviensis boliviensis clone CH254-44M3,... 44 9.4 1
(AC176268) Strongylocentrotus purpuratus clone R3-3057O9, WO... 44 9.4 1
(AC166790) Bos taurus clone CH240-196A23, WORKING DRAFT SEQU... 44 9.4 1
(AC163773) Bos taurus clone CH240-255L17, WORKING DRAFT SEQU... 44 9.4 1
(FI061823) CHO_OF6650xi06r1.ab1 CHO_OF6 Nicotiana tabacum ge... 44 9.4 1
(FH948886) CHO_OF6748xb18r1.ab1 CHO_OF6 Nicotiana tabacum ge... 44 9.4 1
(FH465460) CHO_OF4956xk08r1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 9.4 1
(ET913542) CHO_OF328xl22f1.ab1 CHO_OF Nicotiana tabacum geno... 44 9.4 1
(EK199917) 1095460052481 Global-Ocean-Sampling_GS-31-01-01-1... 44 9.4 1
(EJ735450) 1092961132689 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.4 1
(EJ728910) 1092960009324 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.4 1
(EJ117432) 1092343358515 Global-Ocean-Sampling_GS-27-01-01-1... 44 9.4 1
(ED749545) GM_WBb0115F15.f GM_WBb Glycine max genomic clone ... 44 9.4 1
(DX434474) BE1089_G06_R IASMA L1 HindIII BAC library Vitis v... 44 9.4 1
(DX158427) OR_ABa0012A07.r OR_ABa Oryza ridleyi genomic clon... 44 9.4 1
(DU190499) 1098538160146 CHORI-243 Ovis aries genomic clone ... 44 9.4 1
(DU016601) 239106 Tomato MboI BAC Library Solanum lycopersic... 44 9.4 1
(CZ724306) OC__Ba0050M10.r OC__Ba Oryza coarctata genomic cl... 44 9.4 1
(CW889541) RPCI42_110J16.TV RPCI-42 Bos taurus genomic clone... 44 9.4 1
(CT543026) A BAC library has been constructed from cultivar ... 44 9.4 1
(CC775560) CH240_129D8.TJ CHORI-240 Bos taurus genomic clone... 44 9.4 1
(EC796557) RAE00016224 Reclinomonas americana Home made, nor... 44 9.4 1
(EC795969) RAE00010310 Reclinomonas americana Home made, Dec... 44 9.4 1
(EC791163) RAE00007699 Reclinomonas americana Home made, Dec... 44 9.4 1
(CX154446) TfEST073F07 Tf30924 cDNA Library Tritrichomonas f... 44 9.4 1
(CT789170) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 9.4 1
(BB114058) Mus musculus adult male urinary bladder cDNA, RIK... 44 9.4 1
(CP000361) Arcobacter butzleri RM4018, complete genome. 44 9.4 1
(CU467779) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 9.8 6

>(AF487784) Dictyostelium discoideum prenyl cysteine carboxyl
methyltransferase (icmA) gene, complete cds.
Length = 3845

Score = 963 bits (486), Expect(5) = 0.0
Identities = 486/486 (100%)
Strand = Plus / Plus


Query: 351 catttttattaaatcatagtccacagtttaatatggcattattaattagttttattgagt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2333 catttttattaaatcatagtccacagtttaatatggcattattaattagttttattgagt 2392


Query: 411 tttggattgaatggtatttcttcccatcattgaaaacattctcattatggtgggtaggtg 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2393 tttggattgaatggtatttcttcccatcattgaaaacattctcattatggtgggtaggtg 2452


Query: 471 ccatttgtatggtattcggtcaaattgttagatcggttgcaatggatacagcaggttcaa 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2453 ccatttgtatggtattcggtcaaattgttagatcggttgcaatggatacagcaggttcaa 2512


Query: 531 atttcactcatttggttcaagaagaaaagagagatgatcatgttttagttacaaatggta 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2513 atttcactcatttggttcaagaagaaaagagagatgatcatgttttagttacaaatggta 2572


Query: 591 tctatcaatatatgagacatccatcttattttggttggtttgtttggtcagtatcaactc 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2573 tctatcaatatatgagacatccatcttattttggttggtttgtttggtcagtatcaactc 2632


Query: 651 aagtcatccttatgaatccaattagtattattggctttggttgggcttcttggagtttct 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2633 aagtcatccttatgaatccaattagtattattggctttggttgggcttcttggagtttct 2692


Query: 711 tttctcaaagaattgaaaatgaagaagattatttaattcaattttttggaaaatcttata 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2693 tttctcaaagaattgaaaatgaagaagattatttaattcaattttttggaaaatcttata 2752


Query: 771 aagattataaaaaatcagtttggtctggtattccaggtattcattgaaaaattggaacta 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2753 aagattataaaaaatcagtttggtctggtattccaggtattcattgaaaaattggaacta 2812


Query: 831 tagtct 836
||||||
Sbjct: 2813 tagtct 2818

Score = 276 bits (139), Expect(5) = 0.0
Identities = 139/139 (100%)
Strand = Plus / Plus


Query: 162 ggtgcagcaagaagtagtgcaatttcatgtggtcttggtataggtattggttttggtatt 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2060 ggtgcagcaagaagtagtgcaatttcatgtggtcttggtataggtattggttttggtatt 2119


Query: 222 gctttattcattttctcacaaactttaagaggttttggtatttatttagcaggtttatgt 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2120 gctttattcattttctcacaaactttaagaggttttggtatttatttagcaggtttatgt 2179


Query: 282 actttccatatgtgggaat 300
|||||||||||||||||||
Sbjct: 2180 actttccatatgtgggaat 2198

Score = 99.6 bits (50), Expect(5) = 0.0
Identities = 50/50 (100%)
Strand = Plus / Plus


Query: 301 ggaatatatttgggttacaatgtatcatcctgataaattatcaagtaaat 350
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2194 ggaatatatttgggttacaatgtatcatcctgataaattatcaagtaaat 2243

Score = 52.0 bits (26), Expect(5) = 0.0
Identities = 26/26 (100%)
Strand = Plus / Plus


Query: 894 cgattttagaaatgtatttttataac 919
||||||||||||||||||||||||||
Sbjct: 2876 cgattttagaaatgtatttttataac 2901

Score = 36.2 bits (18), Expect(5) = 0.0
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 1 cttttttatctgtttcat 18
||||||||||||||||||
Sbjct: 1900 cttttttatctgtttcat 1917

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,022,861,206
Number of extensions: 65080032
Number of successful extensions: 5872138
Number of sequences better than 10.0: 134
Length of query: 944
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 920
Effective length of database: 96,409,374,237
Effective search space: 88696624298040
Effective search space used: 88696624298040
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.16
Homology vs Protein
Query= Contig-U15442-1 (Contig-U15442-1Q) /CSM_Contig/Contig-U15442-1Q.Seq.d
(944 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q558K8) RecName: Full=Protein-S-isoprenylcysteine O-methyltrans... 367 e-125
AC116984_48(AC116984|pid:none) Dictyostelium discoideum chromoso... 358 e-122
(O12947) RecName: Full=Protein-S-isoprenylcysteine O-methyltrans... 192 2e-47
BC106683_1(BC106683|pid:none) Xenopus laevis farnesyl cysteine c... 192 2e-47
AJ719287_1(AJ719287|pid:none) Gallus gallus mRNA for hypothetica... 185 2e-45
T25721(T25721) hypothetical protein F21F3.3 - Caenorhabditis ele... 181 4e-44
T29326(T29326) hypothetical protein M01E11.1 - Caenorhabditis el... 177 4e-43
(Q9WVM4) RecName: Full=Protein-S-isoprenylcysteine O-methyltrans... 177 5e-43
AF209926_1(AF209926|pid:none) Mus musculus prenylcysteine carbox... 174 4e-42
AK154135_1(AK154135|pid:none) Mus musculus NOD-derived CD11c +ve... 174 4e-42
BC092830_1(BC092830|pid:none) Danio rerio isoprenylcysteine carb... 172 1e-41
AE014296_2368(AE014296|pid:none) Drosophila melanogaster chromos... 163 7e-39
CR380952_108(CR380952|pid:none) Candida glabrata strain CBS138 c... 163 9e-39
(P32584) RecName: Full=Protein-S-isoprenylcysteine O-methyltrans... 159 2e-37
(Q93W54) RecName: Full=Protein-S-isoprenylcysteine O-methyltrans... 155 2e-36
CU928176_518(CU928176|pid:none) Zygosaccharomyces rouxii strain ... 154 6e-36
AE016814_309(AE016814|pid:none) Ashbya gossypii (= Eremothecium ... 148 2e-35
CR382131_936(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 151 3e-35
FN392321_125(FN392321|pid:none) Pichia pastoris GS115 chromosome... 149 2e-34
DQ653301_1(DQ653301|pid:none) Arabidopsis thaliana clone 0000016... 146 9e-34
(A2XX73) RecName: Full=Probable protein-S-isoprenylcysteine O-me... 142 2e-32
AE017343_103(AE017343|pid:none) Cryptococcus neoformans var. neo... 140 5e-32
EU969267_1(EU969267|pid:none) Zea mays clone 327747 protein-S-is... 139 2e-31
EU974042_1(EU974042|pid:none) Zea mays clone 438256 protein-S-is... 137 4e-31
AP008210_1790(AP008210|pid:none) Oryza sativa (japonica cultivar... 137 7e-31
AM920428_436(AM920428|pid:none) Penicillium chrysogenum Wisconsi... 132 2e-29
AK100414_1(AK100414|pid:none) Oryza sativa Japonica Group cDNA c... 131 3e-29
CP000582_114(CP000582|pid:none) Ostreococcus lucimarinus CCE9901... 128 3e-28
CR954202_486(CR954202|pid:none) Ostreococcus tauri strain OTTH05... 123 1e-26
FM992693_101(FM992693|pid:none) Candida dubliniensis CD36 chromo... 122 1e-26
AL392174_7(AL392174|pid:none) Arabidopsis thaliana DNA chromosom... 119 1e-25
CR382139_236(CR382139|pid:none) Debaryomyces hansenii strain CBS... 119 2e-25
AP007171_734(AP007171|pid:none) Aspergillus oryzae RIB40 genomic... 110 5e-23
CP000499_59(CP000499|pid:none) Pichia stipitis CBS 6054 chromoso... 102 2e-20
AM502253_310(AM502253|pid:none) Leishmania infantum chromosome 35. 102 2e-20
CP000081_299(CP000081|pid:none) Leishmania major chromosome 35, ... 101 3e-20
FM992693_102(FM992693|pid:none) Candida dubliniensis CD36 chromo... 89 2e-16
CR382139_237(CR382139|pid:none) Debaryomyces hansenii strain CBS... 88 5e-16
CU633900_842(CU633900|pid:none) Podospora anserina genomic DNA c... 83 2e-14
AY222944_1(AY222944|pid:none) Schistosoma japonicum clone ZZD448... 77 1e-12
CP001196_1289(CP001196|pid:none) Oligotropha carboxidovorans OM5... 66 2e-09
CP000781_4697(CP000781|pid:none) Xanthobacter autotrophicus Py2,... 64 1e-08
CP000090_28(CP000090|pid:none) Ralstonia eutropha JMP134 chromos... 64 1e-08
AE008918_991(AE008918|pid:none) Brucella melitensis 16M chromoso... 62 4e-08
CP000912_242(CP000912|pid:none) Brucella suis ATCC 23445 chromos... 61 6e-08
CP001472_651(CP001472|pid:none) Acidobacterium capsulatum ATCC 5... 61 6e-08
AP009384_3115(AP009384|pid:none) Azorhizobium caulinodans ORS 57... 60 1e-07
AE017224_855(AE017224|pid:none) Brucella abortus biovar 1 str. 9... 60 1e-07
CP000319_1659(CP000319|pid:none) Nitrobacter hamburgensis X14, c... 58 4e-07
AM260479_49(AM260479|pid:none) Ralstonia eutropha H16 chromosome... 58 4e-07
CP000076_2429(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 58 4e-07
AE010299_2623(AE010299|pid:none) Methanosarcina acetivorans str.... 58 5e-07
CP000759_116(CP000759|pid:none) Ochrobactrum anthropi ATCC 49188... 58 5e-07
AM902716_3222(AM902716|pid:none) Bordetella petrii strain DSM 12... 57 1e-06
CP001098_1332(CP001098|pid:none) Halothermothrix orenii H 168, c... 56 2e-06
CP001016_1846(CP001016|pid:none) Beijerinckia indica subsp. indi... 56 2e-06
CU633749_15(CU633749|pid:none) Cupriavidus taiwanensis str. LMG1... 55 3e-06
CP000094_3523(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 54 6e-06
CP000441_1564(CP000441|pid:none) Burkholderia ambifaria AMMD chr... 54 6e-06
AM747721_2651(AM747721|pid:none) Burkholderia cenocepacia J2315 ... 54 1e-05
AP009049_516(AP009049|pid:none) Clostridium kluyveri NBRC 12016 ... 54 1e-05
CP000673_551(CP000673|pid:none) Clostridium kluyveri DSM 555, co... 54 1e-05
CP000725_1732(CP000725|pid:none) Streptococcus gordonii str. Cha... 52 2e-05
CR555306_80(CR555306|pid:none) Azoarcus sp. EbN1 complete genome. 52 2e-05
CP000387_275(CP000387|pid:none) Streptococcus sanguinis SK36, co... 52 3e-05
AE008384_1908(AE008384|pid:none) Methanosarcina mazei strain Goe... 52 4e-05
CP001068_2146(CP001068|pid:none) Ralstonia pickettii 12J chromos... 52 4e-05
AE001437_3355(AE001437|pid:none) Clostridium acetobutylicum ATCC... 51 5e-05
CP001139_1130(CP001139|pid:none) Vibrio fischeri MJ11 chromosome... 50 1e-04
CU458896_352(CU458896|pid:none) Mycobacterium abscessus chromoso... 50 1e-04
AL591688_1594(AL591688|pid:none) Sinorhizobium meliloti 1021 com... 50 1e-04
CP001132_1830(CP001132|pid:none) Acidithiobacillus ferrooxidans ... 49 2e-04
CP001110_2324(CP001110|pid:none) Pelodictyon phaeoclathratiforme... 49 2e-04
CP000629_1928(CP000629|pid:none) Agrobacterium radiobacter K84 c... 49 2e-04
CP000448_1384(CP000448|pid:none) Syntrophomonas wolfei subsp. wo... 48 4e-04
CP000778_201(CP000778|pid:none) Leptospira biflexa serovar Patoc... 48 4e-04
CP001097_446(CP001097|pid:none) Chlorobium limicola DSM 245, com... 48 6e-04
EU643478_8(EU643478|pid:none) Adineta vaga clone Av_TEL_K_B retr... 48 6e-04
AL391737_136(AL391737|pid:none) chromosome I of strain GB-M1 of ... 47 7e-04
(P29940) RecName: Full=Uncharacterized protein in cobO 3'region;... 47 7e-04
CP000551_1207(CP000551|pid:none) Prochlorococcus marinus str. AS... 47 7e-04
CP001100_9(CP001100|pid:none) Chloroherpeton thalassium ATCC 351... 47 0.001
CP000959_1974(CP000959|pid:none) Burkholderia cenocepacia MC0-3 ... 47 0.001
AL646052_2021(AL646052|pid:none) Ralstonia solanacearum GMI1000 ... 46 0.002
CP000076_2354(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 46 0.002
CP000576_1212(CP000576|pid:none) Prochlorococcus marinus str. MI... 46 0.002
CP001348_3135(CP001348|pid:none) Clostridium cellulolyticum H10,... 46 0.002
AM236080_3839(AM236080|pid:none) Rhizobium leguminosarum bv. vic... 46 0.002
AM270059_35(AM270059|pid:none) Aspergillus niger contig An03c018... 46 0.002
AM039952_113(AM039952|pid:none) Xanthomonas campestris pv. vesic... 45 0.004
CP000854_2116(CP000854|pid:none) Mycobacterium marinum M, comple... 45 0.004
CP001291_2670(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 45 0.004
AM747721_2345(AM747721|pid:none) Burkholderia cenocepacia J2315 ... 45 0.005
CP000492_504(CP000492|pid:none) Chlorobium phaeobacteroides DSM ... 45 0.005
CP000155_5768(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 45 0.005
FM178379_1249(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ... 45 0.005
CP000686_3618(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 44 0.006
CP001110_2532(CP001110|pid:none) Pelodictyon phaeoclathratiforme... 44 0.006
CP000569_35(CP000569|pid:none) Actinobacillus pleuropneumoniae L... 44 0.006
AB025604_16(AB025604|pid:none) Arabidopsis thaliana genomic DNA,... 44 0.006
AM114193_1714(AM114193|pid:none) Uncultured methanogenic archaeo... 44 0.006
AJ567348_3(AJ567348|pid:none) Sinorhizobium fredii partial cobN ... 44 0.008
CP001338_184(CP001338|pid:none) Candidatus Methanosphaerula palu... 44 0.008
CP000390_1633(CP000390|pid:none) Mesorhizobium sp. BNC1, complet... 43 0.014
AE016827_385(AE016827|pid:none) Mannheimia succiniciproducens MB... 43 0.014
AP008971_1380(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA... 43 0.018
AE013598_23(AE013598|pid:none) Xanthomonas oryzae pv. oryzae KAC... 43 0.018
CP000724_3156(CP000724|pid:none) Alkaliphilus metalliredigens QY... 43 0.018
CP000441_1284(CP000441|pid:none) Burkholderia ambifaria AMMD chr... 42 0.023
AM295250_81(AM295250|pid:none) Staphylococcus carnosus subsp. ca... 42 0.023
CP000607_1428(CP000607|pid:none) Chlorobium phaeovibrioides DSM ... 42 0.023
AY087834_1(AY087834|pid:none) Arabidopsis thaliana clone 38797 m... 42 0.023
CP000511_3865(CP000511|pid:none) Mycobacterium vanbaalenii PYR-1... 42 0.023
CP001026_1902(CP001026|pid:none) Burkholderia ambifaria MC40-6 c... 42 0.031
CP000141_1589(CP000141|pid:none) Carboxydothermus hydrogenoforma... 42 0.031
CP000482_2466(CP000482|pid:none) Pelobacter propionicus DSM 2379... 42 0.031
CP000462_2533(CP000462|pid:none) Aeromonas hydrophila subsp. hyd... 42 0.031
AM260479_1927(AM260479|pid:none) Ralstonia eutropha H16 chromoso... 42 0.031
CR378677_52(CR378677|pid:none) Photobacterium profundum SS9 chro... 42 0.031
AE017340_2484(AE017340|pid:none) Idiomarina loihiensis L2TR, com... 42 0.031
CP000387_1003(CP000387|pid:none) Streptococcus sanguinis SK36, c... 42 0.040
AE004439_2013(AE004439|pid:none) Pasteurella multocida subsp. mu... 42 0.040
CP001053_823(CP001053|pid:none) Burkholderia phytofirmans PsJN c... 41 0.052
CT573071_41(CT573071|pid:none) Kuenenia stuttgartiensis genome f... 41 0.052
CP000473_2414(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 41 0.052
CP000804_3443(CP000804|pid:none) Roseiflexus castenholzii DSM 13... 41 0.052
FJ456942_9(FJ456942|pid:none) Lycorma delicatula mitochondrion, ... 41 0.052
CP000473_3557(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 41 0.068
CR954246_1076(CR954246|pid:none) Pseudoalteromonas haloplanktis ... 41 0.068
CP000519_188(CP000519|pid:none) Mycobacterium sp. KMS plasmid pM... 41 0.068
CP001287_5(CP001287|pid:none) Cyanothece sp. PCC 8801, complete ... 41 0.068
BA000040_7013(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 40 0.089
CP001322_1923(CP001322|pid:none) Desulfatibacillum alkenivorans ... 40 0.089
CP000251_3793(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 40 0.089
AM778955_70(AM778955|pid:none) Microcystis aeruginosa PCC 7806 g... 40 0.12
CP000148_1959(CP000148|pid:none) Geobacter metallireducens GS-15... 40 0.12
AM408590_2460(AM408590|pid:none) Mycobacterium bovis BCG Pasteur... 40 0.12
CP000302_2916(CP000302|pid:none) Shewanella denitrificans OS217,... 40 0.12
CP001108_473(CP001108|pid:none) Prosthecochloris aestuarii DSM 2... 40 0.12
CP000853_1047(CP000853|pid:none) Alkaliphilus oremlandii OhILAs,... 40 0.12
AP010904_4305(AP010904|pid:none) Desulfovibrio magneticus RS-1 D... 40 0.15
CP001022_512(CP001022|pid:none) Exiguobacterium sibiricum 255-15... 40 0.15
CP000698_2765(CP000698|pid:none) Geobacter uraniireducens Rf4, c... 40 0.15
CP000478_502(CP000478|pid:none) Syntrophobacter fumaroxidans MPO... 40 0.15
CP000511_3621(CP000511|pid:none) Mycobacterium vanbaalenii PYR-1... 39 0.20
CP000450_918(CP000450|pid:none) Nitrosomonas eutropha C91, compl... 39 0.20
CP000927_2769(CP000927|pid:none) Caulobacter sp. K31, complete g... 39 0.20
CP000606_2751(CP000606|pid:none) Shewanella loihica PV-4, comple... 39 0.20
BA000037_1955(BA000037|pid:none) Vibrio vulnificus YJ016 DNA, ch... 39 0.20
FM954972_1120(FM954972|pid:none) Vibrio splendidus LGP32 chromos... 39 0.26
CT978603_141(CT978603|pid:none) Synechococcus sp. RCC307 genomic... 39 0.34
CP001037_2829(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 39 0.34
CP000725_793(CP000725|pid:none) Streptococcus gordonii str. Chal... 39 0.34
CP000377_644(CP000377|pid:none) Silicibacter sp. TM1040, complet... 38 0.44
CP000507_3328(CP000507|pid:none) Shewanella amazonensis SB2B, co... 38 0.44
CP000356_1025(CP000356|pid:none) Sphingopyxis alaskensis RB2256,... 38 0.44
AE010299_720(AE010299|pid:none) Methanosarcina acetivorans str. ... 38 0.44
BA000022_3120(BA000022|pid:none) Synechocystis sp. PCC 6803 DNA,... 38 0.44
AJ833002_15(AJ833002|pid:none) Serratia marcescens prodigiosin b... 38 0.44
CP001326_113(CP001326|pid:none) Micromonas sp. RCC299 chromosome... 38 0.58
CR628336_260(CR628336|pid:none) Legionella pneumophila str. Pari... 38 0.58
CP000116_484(CP000116|pid:none) Thiobacillus denitrificans ATCC ... 37 0.75
EU016618_53(EU016618|pid:none) Uncultured marine microorganism H... 37 0.75
AY596295_81(AY596295|pid:none) Haloarcula marismortui ATCC 43049... 37 0.75
CP000628_379(CP000628|pid:none) Agrobacterium radiobacter K84 ch... 37 0.75
CP000806_3482(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 37 0.75
CP001053_620(CP001053|pid:none) Burkholderia phytofirmans PsJN c... 37 0.98
CR522870_3019(CR522870|pid:none) Desulfotalea psychrophila LSv54... 37 0.98
CP000057_207(CP000057|pid:none) Haemophilus influenzae 86-028NP,... 37 0.98
EF089399_91(EF089399|pid:none) Uncultured marine bacterium EB0_3... 37 0.98
AE006470_1656(AE006470|pid:none) Chlorobium tepidum TLS, complet... 37 0.98
CP000672_532(CP000672|pid:none) Haemophilus influenzae PittGG, c... 37 0.98
CP000089_1579(CP000089|pid:none) Dechloromonas aromatica RCB, co... 37 0.98
CP001614_3327(CP001614|pid:none) Teredinibacter turnerae T7901, ... 37 1.3
CP000830_2188(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ... 37 1.3
BA000001_1260(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, ... 37 1.3
AE014133_309(AE014133|pid:none) Streptococcus mutans UA159, comp... 37 1.3
BA000045_2461(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 37 1.3
AF314589_12(AF314589|pid:none) Ophiopholis aculeata mitochondrio... 36 1.7
CU638744_734(CU638744|pid:none) Podospora anserina genomic DNA c... 36 1.7
CU633751_268(CU633751|pid:none) Cupriavidus taiwanensis str. LMG... 36 1.7
CP000675_272(CP000675|pid:none) Legionella pneumophila str. Corb... 36 2.2
AH1148(AH1148) hypothetical protein lmo0591 [imported] - Listeri... 36 2.2
CP000384_3471(CP000384|pid:none) Mycobacterium sp. MCS, complete... 36 2.2
CP000878_1083(CP000878|pid:none) Prochlorococcus marinus str. MI... 36 2.2
AE016825_3216(AE016825|pid:none) Chromobacterium violaceum ATCC ... 36 2.2
CP000644_1569(CP000644|pid:none) Aeromonas salmonicida subsp. sa... 36 2.2
CR628337_257(CR628337|pid:none) Legionella pneumophila str. Lens... 36 2.2
CP000360_3562(CP000360|pid:none) Acidobacteria bacterium Ellin34... 36 2.2
CP001349_4814(CP001349|pid:none) Methylobacterium nodulans ORS 2... 36 2.2
CU861906_30(CU861906|pid:none) Ralstonia solanacearum strain Mol... 36 2.2
CP001510_1742(CP001510|pid:none) Methylobacterium extorquens AM1... 35 2.9
AP009179_1174(AP009179|pid:none) Sulfurovum sp. NBC37-1 genomic ... 35 2.9
AH1507(AH1507) hypothetical membrane protein homolog lin0600 [im... 35 2.9
CP000127_2710(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 35 2.9
CP001197_2965(CP001197|pid:none) Desulfovibrio vulgaris str. 'Mi... 35 2.9
CP001175_2012(CP001175|pid:none) Listeria monocytogenes HCC23, c... 35 3.7
AM910994_368(AM910994|pid:none) Plasmodium knowlesi strain H chr... 35 3.7
CP000127_1060(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 35 3.7
FM242711_596(FM242711|pid:none) Listeria monocytogenes Clip81459... 35 3.7
CR954247_161(CR954247|pid:none) Pseudoalteromonas haloplanktis s... 35 3.7
CP000321_52(CP000321|pid:none) Nitrobacter hamburgensis X14 plas... 35 3.7
CP001101_502(CP001101|pid:none) Chlorobium phaeobacteroides BS1,... 35 3.7
BA000040_1218(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 35 3.7
AM263198_558(AM263198|pid:none) Listeria welshimeri serovar 6b s... 35 3.7
CP001389_1218(CP001389|pid:none) Rhizobium sp. NGR234, complete ... 35 3.7
CP000943_6095(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 35 4.9
EF537017_1(EF537017|pid:none) Oryzias latipes steroid 5-alpha-re... 35 4.9
CP001392_2434(CP001392|pid:none) Diaphorobacter sp. TPSY, comple... 35 4.9
CP000389_3(CP000389|pid:none) Mesorhizobium sp. BNC1 plasmid 1, ... 35 4.9
CP000494_5766(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 35 4.9
CP000720_2748(CP000720|pid:none) Yersinia pseudotuberculosis IP ... 35 4.9
CP000490_1200(CP000490|pid:none) Paracoccus denitrificans PD1222... 35 4.9
CP001103_3318(CP001103|pid:none) Alteromonas macleodii 'Deep eco... 35 4.9
AY349019_58(AY349019|pid:none) Neodiprion lecontei NPV, complete... 35 4.9
AE017354_1018(AE017354|pid:none) Legionella pneumophila subsp. p... 35 4.9
CP001089_1306(CP001089|pid:none) Geobacter lovleyi SZ, complete ... 35 4.9
CP000851_2811(CP000851|pid:none) Shewanella pealeana ATCC 700345... 35 4.9
CP001185_678(CP001185|pid:none) Thermosipho africanus TCF52B, co... 35 4.9
CP000697_3000(CP000697|pid:none) Acidiphilium cryptum JF-5, comp... 34 6.4
CP001392_2144(CP001392|pid:none) Diaphorobacter sp. TPSY, comple... 34 6.4
CP000679_1731(CP000679|pid:none) Caldicellulosiruptor saccharoly... 34 6.4
AE017180_2311(AE017180|pid:none) Geobacter sulfurreducens PCA, c... 34 6.4
CP000557_1545(CP000557|pid:none) Geobacillus thermodenitrificans... 34 6.4
AM236080_3171(AM236080|pid:none) Rhizobium leguminosarum bv. vic... 34 6.4
CP000301_900(CP000301|pid:none) Rhodopseudomonas palustris BisB1... 34 6.4
CU914168_92(CU914168|pid:none) Ralstonia solanacearum strain IPO... 34 6.4
BA000040_3993(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 34 6.4
CP000489_210(CP000489|pid:none) Paracoccus denitrificans PD1222 ... 34 6.4
AM447130_2(AM447130|pid:none) Vitis vinifera contig VV78X274538.... 34 6.4
EF101928_410(EF101928|pid:none) Acanthocystis turfacea Chlorella... 28 7.7
CP000112_1555(CP000112|pid:none) Desulfovibrio desulfuricans G20... 34 8.3
CP000471_386(CP000471|pid:none) Magnetococcus sp. MC-1, complete... 34 8.3
CP000316_3309(CP000316|pid:none) Polaromonas sp. JS666, complete... 34 8.3
AP009179_1312(AP009179|pid:none) Sulfurovum sp. NBC37-1 genomic ... 34 8.3
AE009952_2951(AE009952|pid:none) Yersinia pestis KIM, complete g... 34 8.3
CP000539_3009(CP000539|pid:none) Acidovorax sp. JS42, complete g... 34 8.3
CP000820_561(CP000820|pid:none) Frankia sp. EAN1pec, complete ge... 34 8.3
AE003852_1180(AE003852|pid:none) Vibrio cholerae O1 biovar eltor... 34 8.3
AP008231_316(AP008231|pid:none) Synechococcus elongatus PCC 6301... 34 8.3
CP001279_918(CP001279|pid:none) Nautilia profundicola AmH, compl... 34 8.3
CP000479_4042(CP000479|pid:none) Mycobacterium avium 104, comple... 34 8.3
CP001389_2142(CP001389|pid:none) Rhizobium sp. NGR234, complete ... 34 8.3
CP000910_2882(CP000910|pid:none) Renibacterium salmoninarum ATCC... 34 8.3

>(Q558K8) RecName: Full=Protein-S-isoprenylcysteine
O-methyltransferase; EC=2.1.1.100; AltName:
Full=Isoprenylcysteine carboxylmethyltransferase;
AltName: Full=Prenylcysteine carboxyl methyltransferase;
Short=pcCMT; AltName: Full=Prenylated protein
carboxyl methyltransferase; Short=PPMT;
&AF487784_1(AF487784|pid:none)
Length = 237

Score = 367 bits (943), Expect(2) = e-125
Identities = 171/171 (100%), Positives = 171/171 (100%)
Frame = +2

Query: 302 EYIWVTMYHPDKLSSKSFLLNHSPQFNMALLISFIEFWIEWYFFPSLKTFSLWWVGAICM 481
EYIWVTMYHPDKLSSKSFLLNHSPQFNMALLISFIEFWIEWYFFPSLKTFSLWWVGAICM
Sbjct: 67 EYIWVTMYHPDKLSSKSFLLNHSPQFNMALLISFIEFWIEWYFFPSLKTFSLWWVGAICM 126

Query: 482 VFGQIVRSVAMDTAGSNFTHLVQEEKRDDHVLVTNGIYQYMRHPSYFGWFVWSVSTQVIL 661
VFGQIVRSVAMDTAGSNFTHLVQEEKRDDHVLVTNGIYQYMRHPSYFGWFVWSVSTQVIL
Sbjct: 127 VFGQIVRSVAMDTAGSNFTHLVQEEKRDDHVLVTNGIYQYMRHPSYFGWFVWSVSTQVIL 186

Query: 662 MNPISIIGFGWASWSFFSQRIENEEDYLIQFFGKSYKDYKKSVWSGIPGIH 814
MNPISIIGFGWASWSFFSQRIENEEDYLIQFFGKSYKDYKKSVWSGIPGIH
Sbjct: 187 MNPISIIGFGWASWSFFSQRIENEEDYLIQFFGKSYKDYKKSVWSGIPGIH 237

Score = 103 bits (258), Expect(2) = e-125
Identities = 52/68 (76%), Positives = 53/68 (77%)
Frame = +3

Query: 99 MDQSEIVKLNKIKAKSAWLKKGAARSSAISCXXXXXXXXXXXXXXXSQTLRGFGIYLAGL 278
MDQSEIVKLNKIKAKSAWLKKGAARSSAISC SQTLRGFGIYLAGL
Sbjct: 1 MDQSEIVKLNKIKAKSAWLKKGAARSSAISCGLGIGIGFGIALFIFSQTLRGFGIYLAGL 60

Query: 279 CTFHMWEW 302
CTFHMWE+
Sbjct: 61 CTFHMWEY 68

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,317,291,783
Number of extensions: 26203436
Number of successful extensions: 72269
Number of sequences better than 10.0: 244
Number of HSP's gapped: 72101
Number of HSP's successfully gapped: 248
Length of query: 314
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 186
Effective length of database: 636,901,312
Effective search space: 118463644032
Effective search space used: 118463644032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.91 gvh: 0.33 alm: 0.32 top: 0.57 tms: 0.00 mit: 0.39 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
28.0 %: mitochondrial
20.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for Contig-U15442-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 5
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0