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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Contig-U15431-1
Contig ID Contig-U15431-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15431-1 (Contig-U15431-1Q) /CSM_Contig/Contig-U15431-1Q.Seq.d
CATCAAGAGAGAAAACTAGAAAAGATAAAGCATTAGTATTAACAACAGAT
GATCTTTCATTAGCATTAAGAGAATATGGTATTAACATTAGAAAACCTGA
ATATTTCGCTGAAAATATACCACCACAAGAAATTGATGAAGCTGCTGCTG
CAACCAATGCTGCTGCTTTAGCTGTATCAACATCTTCAACTACAACCACT
ACAACATCAAAAGAATCAAAAGAATCAAAAGAATCAACAAATTCTACAAC
TGCAACTGCACCAACAACTCCAAAAGAAGAATCTGGTGAATCTTCAAAAA
AGAAACAAAAAACTAAATAAGACATAATACATATATCTAATATGTATTAA
TTTGTAAATATAATTGAAAATAAATAATAGTAAAAAGATAAATATATATA
TATATATATATATAGACTATAAA
Gap no gap
Contig length 423
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 2748088
End point 2747666
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U15431
List of clone(s) 

est1=SLI382Z,1,423
Translated Amino Acid sequence 
SREKTRKDKALVLTTDDLSLALREYGINIRKPEYFAENIPPQEIDEAAAATNAAALAVST
SSTTTTTTSKESKESKESTNSTTATAPTTPKEESGESSKKKQKTK*diihisnmy*fvni
ienk***kdkyiyiyiyrl*
Translated Amino Acid sequence (All Frames) 
Frame A:
hqerklekikh*y*qqmifh*h*enmvltlenlnislkiyhhkklmklllqpmlll*lyq
hlqlqplqhqknqknqknqqilqlqlhqqlqkknlvnlqkrnkklnkt*yiylicinl*i
*lkinnskkiniyiyiyidyk


Frame B:
ikren*kr*sisinnr*sfisikriwy*h*kt*ifr*kytttrn**scccnqcccfscin
ifnynhynikrikrikrinkfyncnctnnskrriw*ifkketkn*irhntyi*yvlicky
n*k*iivkr*iyiyiyi*ti


Frame C:
SREKTRKDKALVLTTDDLSLALREYGINIRKPEYFAENIPPQEIDEAAAATNAAALAVST
SSTTTTTTSKESKESKESTNSTTATAPTTPKEESGESSKKKQKTK*diihisnmy*fvni
ienk***kdkyiyiyiyrl*
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15431-1 (Contig-U15431-1Q)
/CSM_Contig/Contig-U15431-1Q.Seq.d
         (423 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15431-1 (Contig-U15431-1Q) /CSM_Contig/Conti...   585  e-167
Contig-U11946-1 (Contig-U11946-1Q) /CSM_Contig/Conti...    54  2e-07
Contig-U06491-1 (Contig-U06491-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U15759-1 (Contig-U15759-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U14250-1 (Contig-U14250-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U08442-1 (Contig-U08442-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U15668-1 (Contig-U15668-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U14170-1 (Contig-U14170-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U12071-1 (Contig-U12071-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U01123-1 (Contig-U01123-1Q) /CSM_Contig/Conti...    38  0.011

>Contig-U15431-1 (Contig-U15431-1Q) /CSM_Contig/Contig-U15431-1Q.Seq.d
          Length = 423

 Score =  585 bits (295), Expect = e-167
 Identities = 295/295 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcaagagagaaaactagaaaagataaagcattagtattaacaacagatgatctttcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   catcaagagagaaaactagaaaagataaagcattagtattaacaacagatgatctttcat 60

                                                                       
Query: 61  tagcattaagagaatatggtattaacattagaaaacctgaatatttcgctgaaaatatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tagcattaagagaatatggtattaacattagaaaacctgaatatttcgctgaaaatatac 120

                                                                       
Query: 121 caccacaagaaattgatgaagctgctgctgcaaccaatgctgctgctttagctgtatcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caccacaagaaattgatgaagctgctgctgcaaccaatgctgctgctttagctgtatcaa 180

                                                                       
Query: 181 catcttcaactacaaccactacaacatcaaaagaatcaaaagaatcaaaagaatcaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 catcttcaactacaaccactacaacatcaaaagaatcaaaagaatcaaaagaatcaacaa 240

                                                                  
Query: 241 attctacaactgcaactgcaccaacaactccaaaagaagaatctggtgaatcttc 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 attctacaactgcaactgcaccaacaactccaaaagaagaatctggtgaatcttc 295


 Score = 81.8 bits (41), Expect = 8e-16
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                    
Query: 313 ctaaataagacataatacatatatctaatatgtattaattt 353
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ctaaataagacataatacatatatctaatatgtattaattt 353


>Contig-U11946-1 (Contig-U11946-1Q) /CSM_Contig/Contig-U11946-1Q.Seq.d
          Length = 1617

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                              
Query: 207 tcaaaagaatcaaaagaatcaaaagaatcaacaaattctacaactgcaact 257
           |||||||| |||||||| |||||||| |||| | || ||||||||||||||
Sbjct: 358 tcaaaagattcaaaagattcaaaagattcaaaagatactacaactgcaact 408


>Contig-U06491-1 (Contig-U06491-1Q) /CSM_Contig/Contig-U06491-1Q.Seq.d
          Length = 808

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 208 caaaagaatcaaaagaatcaaaagaa 233
           ||||| ||||||||||||||||||||
Sbjct: 244 caaaacaatcaaaagaatcaaaagaa 269


 Score = 40.1 bits (20), Expect = 0.003
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 206 atcaaaagaatcaaaagaatcaaa 229
           ||||||||||||||||||| ||||
Sbjct: 251 atcaaaagaatcaaaagaaccaaa 274


 Score = 36.2 bits (18), Expect = 0.042
 Identities = 27/30 (90%)
 Strand = Plus / Plus

                                         
Query: 208 caaaagaatcaaaagaatcaaaagaatcaa 237
           ||||| || ||||| |||||||||||||||
Sbjct: 235 caaaacaaccaaaacaatcaaaagaatcaa 264


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6962
Number of Sequences: 8402
Number of extensions: 6962
Number of successful extensions: 1012
Number of sequences better than 10.0: 161
length of query: 423
length of database: 8,075,542
effective HSP length: 16
effective length of query: 407
effective length of database: 7,941,110
effective search space: 3232031770
effective search space used: 3232031770
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.25
Homology vs DNA 
Query= Contig-U15431-1 (Contig-U15431-1Q) /CSM_Contig/Contig-U15431-1Q.Seq.d
         (423 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU053320) Dictyostelium discoideum slug cDNA, clone SLI382.      585   e-163  1
(AZ682996) ENTLB94TF Entamoeba histolytica Sheared DNA Entam...    64   4e-06  1
(AZ671906) ENTJF42TF Entamoeba histolytica Sheared DNA Entam...    64   4e-06  1
(AZ549111) ENTDZ22TF Entamoeba histolytica Sheared DNA Entam...    64   4e-06  1
(AZ539945) ENTEU89TR Entamoeba histolytica Sheared DNA Entam...    64   4e-06  1
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    58   3e-04  1
(CP000099) Methanosarcina barkeri str. Fusaro, complete genome.    58   3e-04  1
(AL954324) Zebrafish DNA sequence from clone DKEY-35P13 in l...    40   9e-04  2
(BJ424570) Dictyostelium discoideum cDNA clone:ddv52k19, 5' ...    54   0.004  1
(BJ423517) Dictyostelium discoideum cDNA clone:ddv49p11, 5' ...    54   0.004  1
(BJ421992) Dictyostelium discoideum cDNA clone:ddv44a16, 5' ...    54   0.004  1
(BJ371624) Dictyostelium discoideum cDNA clone:ddc58e23, 5' ...    54   0.004  1
(CP000350) Leptospira borgpetersenii serovar Hardjo-bovis JB...    54   0.004  1
(CP000348) Leptospira borgpetersenii serovar Hardjo-bovis L5...    54   0.004  1
(BW274223) Ciona intestinalis cDNA, clone:cign068o11, 5' end...    36   0.014  2
(BW308031) Ciona intestinalis cDNA, clone:ciht018h14, 5' end...    36   0.014  2
(BW274226) Ciona intestinalis cDNA, clone:cign068o15, 5' end...    36   0.014  2
(BW239427) Ciona intestinalis cDNA, clone:cicl104h01, 5' end...    36   0.014  2
(EF588716) Matonia pectinata isolate a048 rbcL-atpB intergen...    52   0.017  1
(AF128525) Homo sapiens chromosome 8 clone XX-18L18 map cen,...    44   0.020  3
(AC090151) Homo sapiens chromosome 8, clone RP11-550I15, com...    44   0.043  3
(BJ389363) Dictyostelium discoideum cDNA clone:dds18p10, 5' ...    36   0.053  2
(BJ345428) Dictyostelium discoideum cDNA clone:dda23m13, 3' ...    36   0.053  2
(BJ401228) Dictyostelium discoideum cDNA clone:dds22f15, 3' ...    36   0.054  2
(AU034157) Dictyostelium discoideum slug cDNA, clone SLC113.       36   0.054  2
(CR381548) Zebrafish DNA sequence from clone CH211-278L3 in ...    50   0.066  1
(CC124016) NDL.54A4.T7 Notre Dame Liverpool Aedes aegypti ge...    50   0.066  1
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    44   0.067  5
(BW641566) Dugesia ryukyuensis mRNA, clone: Dr_sW_021_K17, 5...    38   0.12   2
(AC202508) Medicago truncatula clone mth2-50h3, WORKING DRAF...    36   0.16   2
(AC153002) Medicago truncatula chromosome 6 clone mth2-95m8,...    36   0.16   2
(DB757350) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB756333) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB777560) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB768169) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB765249) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB766245) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB766332) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB775413) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB774716) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB778425) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB771054) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB774531) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB774160) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB766602) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB778489) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB756848) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB755273) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB778653) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB755487) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB768250) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB758636) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB768808) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(ES611341) MTGland_A006_2007-04-03/MTGlandA006_E05_020_1 Med...    36   0.20   2
(DB768280) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB760766) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB759569) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB777874) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB781046) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB773311) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB776265) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB773466) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB766002) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB760828) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB758675) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB775186) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB767351) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB763530) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB778365) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB765114) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB758509) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB777671) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB775333) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB764464) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB761921) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB767465) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(DB767045) Apis mellifera head cDNA, RIKEN full-length enric...    38   0.20   2
(AC122540) Mus musculus BAC clone RP24-555K13 from chromosom...    48   0.26   1
(AM269894) Eimeria tenella chromosome 1, ordered contigs.          48   0.26   1
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    48   0.26   1
(AC229607) Mustela putorius furo clone CH237-304M9, WORKING ...    48   0.26   1
(AC226838) Mustela putorius furo clone CH237-320A13, WORKING...    48   0.26   1
(AC165314) Mus musculus chromosome 3 clone RP23-52E7 map 3, ...    48   0.26   1
(EJ723449) 1092959471363 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.26   1
(EJ685699) 1092955175244 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.26   1
(DU590278) OO__Ba0083M06.r OO__Ba Oryza officinalis genomic ...    48   0.26   1
(DU543049) OO__Ba0016G18.f OO__Ba Oryza officinalis genomic ...    48   0.26   1
(DU541959) OO__Ba0014O05.f OO__Ba Oryza officinalis genomic ...    48   0.26   1
(CZ680166) OM__Ba0238L02.r OM__Ba Oryza minuta genomic clone...    48   0.26   1
(BW637260) Dugesia ryukyuensis mRNA, clone: Dr_sW_007_P11, 5...    38   0.41   2
(AC160096) Medicago truncatula chromosome 8 clone mth2-75a15...    34   0.58   2
(AC174307) Medicago truncatula clone mth2-123h8, WORKING DRA...    34   0.58   2
(EV260273) MTYE583TF JCVI-MT1 Medicago truncatula cDNA 5', m...    34   0.73   2
(FD768216) Zfi02b_48_B05_C017.g1 cDNA library derived from f...    32   0.74   2
(DB770556) Apis mellifera head cDNA, RIKEN full-length enric...    36   0.75   2
(AC016394) Homo sapiens chromosome 10 clone RP11-152N13, com...    42   0.87   2
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041...    46   1.0    1
(CE665084) tigr-gss-dog-17000329179768 Dog Library Canis lup...    46   1.0    1
(EL480843) CHUM2834.b1_D13.ab1 CHU(LMS) puzzle sunflower Hel...    46   1.0    1
(EL428743) CHCM7992.b1_P06.ab1 CHC(LMS) Texas blueweed Helia...    46   1.0    1
(EE627128) CHWS560.b1_P19.ab1 CHW(LMS) silverleaf sunflower ...    46   1.0    1
(DY914636) CHAY10135.b1_N13.ab1 CHA(XYZ) common wild sunflow...    46   1.0    1
(CF078688) QHK3K03.yg.ab1 QH_K sunflower H.paradoxus Heliant...    46   1.0    1
(CF078289) QHK1O18.yg.ab1 QH_K sunflower H.paradoxus Heliant...    46   1.0    1
(CF077996) QHK17O17.yg.ab1 QH_K sunflower H.paradoxus Helian...    46   1.0    1
(CF077223) QHK15L03.yg.ab1 QH_K sunflower H.paradoxus Helian...    46   1.0    1
(CF076806) QHK12P10.yg.ab1 QH_K sunflower H.paradoxus Helian...    46   1.0    1
(CF076588) QHK12D16.yg.ab1 QH_K sunflower H.paradoxus Helian...    46   1.0    1
(CF076188) QHK10B24.yg.ab1 QH_K sunflower H.paradoxus Helian...    46   1.0    1
(GE751775) MUS23-I20.y1d-s SHGC-MUS Mytilus californianus cD...    46   1.0    1
(FD152117) CBZC2171.g1 CBZC: Normalized blue catfish cDNA li...    46   1.0    1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   1.8    7
(AF303045) Helicoverpa armigera nuclear polyhedrosis virus, ...    32   2.1    2
(AC139073) Homo sapiens chromosome 11 clone RP11-485M24 map ...    32   2.1    2
(AL137124) Human DNA sequence from clone RP11-485M23 on chro...    32   2.3    2
(AK112387) Ciona intestinalis cDNA, clone:ciad045p15, full i...    34   2.6    2
(FK164183) XABT188836.b1 Gateway compatible cien cDNA librar...    34   2.7    2
(BW211476) Ciona intestinalis cDNA, clone:cieg067g24, 5' end...    34   2.7    2
(FF744850) XABT55293.fwd Gateway compatible cien cDNA librar...    34   2.7    2
(FK197454) XABT209348.b1 Gateway compatible cien cDNA librar...    34   2.7    2
(BP007860) Ciona intestinalis cDNA, clone:ciad45p15, 5' end,...    34   2.7    2
(FK048510) XABT116561.b1 Gateway compatible cien cDNA librar...    34   2.7    2
(FF767999) XABT71354.fwd Gateway compatible cien cDNA librar...    34   2.7    2
(FK193920) XABT207133.b1 Gateway compatible cien cDNA librar...    34   2.8    2
(FK070192) XABT129983.b1 Gateway compatible cien cDNA librar...    34   2.8    2
(BW357775) Ciona intestinalis cDNA, clone:cima813m24, 5'end,...    34   2.8    2
(BW203987) Ciona intestinalis cDNA, clone:cicl086d12, 5' end...    34   2.8    2
(CE097162) tigr-gss-dog-17000371076308 Dog Library Canis lup...    34   2.8    2
(EC184551) SOE00001224 Scenedesmus obliquus Normalized large...    34   2.8    2
(DB775138) Apis mellifera head cDNA, RIKEN full-length enric...    34   2.8    2
(DB780247) Apis mellifera head cDNA, RIKEN full-length enric...    34   2.8    2
(BJ702006) Ptyochromis sp. 'redtail sheller' cDNA clone:no55...    32   3.3    3
(EB975358) 15501798 ZF40 Danio rerio cDNA clone 4218726, mRN...    40   4.0    2
(BV032164) S212P6412FH5.T0 CZECHII/Ei Mus musculus STS genom...    44   4.1    1
(AC122587) Rattus norvegicus  BAC CH230-173H6 (Children's Ho...    44   4.1    1
(AC118290) Rattus norvegicus 2 BAC CH230-366D18 (Children's ...    44   4.1    1
(AC116411) Mus musculus chromosome 3, clone RP24-485O3, comp...    44   4.1    1
(CP000502) Pichia stipitis CBS 6054 chromosome 8, complete s...    44   4.1    1
(AM441513) Vitis vinifera contig VV78X041175.4, whole genome...    44   4.1    1
(AC189231) Brassica rapa subsp. pekinensis clone KBrB013M01,...    44   4.1    1
(U10401) Caenorhabditis elegans cosmid T20B12, complete sequ...    44   4.1    1
(AF264757) Caenorhabditis elegans Mlx interactor (mio) mRNA,...    44   4.1    1
(AF019985) Dictyostelium discoideum Spalten (spnA) mRNA, com...    44   4.1    1
(AF152364) Homo sapiens constitutive fragile region FRA3B se...    44   4.1    1
(AC099780) Homo sapiens chromosome 3 clone RP11-769M23, comp...    44   4.1    1
(AC150674) Bos taurus clone CH240-443I13, WORKING DRAFT SEQU...    44   4.1    1
(AC120831) Rattus norvegicus clone CH230-447G3, *** SEQUENCI...    44   4.1    1
(CU929257) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   4.1    1
(AC094205) Rattus norvegicus clone CH230-3A14, *** SEQUENCIN...    44   4.1    1
(AC222305) Bos taurus clone CH240-414K6, WORKING DRAFT SEQUE...    44   4.1    1
(AC220920) Oryza officinalis clone OO__Ba0066I12, *** SEQUEN...    44   4.1    1
(AC217848) Bos taurus clone CH240-184L18, WORKING DRAFT SEQU...    44   4.1    1
(AC173523) Bos taurus clone CH240-182I1, WORKING DRAFT SEQUE...    44   4.1    1
(AC168650) Strongylocentrotus purpuratus clone R3-3017J13, W...    44   4.1    1
(AC012461) Homo sapiens chromosome 8 clone RP11-550I15, WORK...    44   4.1    1
(AZ411417) 1M0184P20F Mouse 10kb plasmid UUGC1M library Mus ...    44   4.1    1
(ER539830) 1093016015371 Global-Ocean-Sampling_GS-35-01-01-1...    44   4.1    1
(ER537401) 1093015871717 Global-Ocean-Sampling_GS-35-01-01-1...    44   4.1    1
(ER314782) 1092344131891 Global-Ocean-Sampling_GS-34-01-01-1...    44   4.1    1
(EK379950) 1095469456606 Global-Ocean-Sampling_GS-31-01-01-1...    44   4.1    1
(EK173793) 1095458087908 Global-Ocean-Sampling_GS-31-01-01-1...    44   4.1    1
(DU581520) OO__Ba0071M11.r OO__Ba Oryza officinalis genomic ...    44   4.1    1
(DU106081) JBnY029G15R Brassica napus BAC library JBnY Brass...    44   4.1    1
(AL201647) Tetraodon nigroviridis genome survey sequence PUC...    44   4.1    1
(DE211866) Branchiostoma floridae DNA, clone: CH302-102_A22_...    44   4.1    1
(DE030593) Branchiostoma floridae DNA, clone: CH302-047L20.F...    44   4.1    1
(CZ673627) OM__Ba0230A09.f OM__Ba Oryza minuta genomic clone...    44   4.1    1
(CZ666384) OM__Ba0220F23.f OM__Ba Oryza minuta genomic clone...    44   4.1    1
(CZ664820) OM__Ba0218D23.f OM__Ba Oryza minuta genomic clone...    44   4.1    1
(CZ664552) OM__Ba0217O03.f OM__Ba Oryza minuta genomic clone...    44   4.1    1
(CZ657347) OM__Ba0208E04.r OM__Ba Oryza minuta genomic clone...    44   4.1    1
(CZ620659) OM__Ba0151D07.f OM__Ba Oryza minuta genomic clone...    44   4.1    1
(CZ614689) OM__Ba0142M02.r OM__Ba Oryza minuta genomic clone...    44   4.1    1
(CZ134342) OA_BBa0027M17.f OA_BBa Oryza alta genomic clone O...    44   4.1    1
(CZ128126) OA_BBa0018J23.r OA_BBa Oryza alta genomic clone O...    44   4.1    1
(CZ011565) OA_BBa0056D08.f OA_BBa Oryza alta genomic clone O...    44   4.1    1
(CW778683) OP__Ba0083D10.f OP__Ba Oryza punctata genomic clo...    44   4.1    1
(CW753668) OP__Ba0069P14.r OP__Ba Oryza punctata genomic clo...    44   4.1    1
(CW750447) OP__Ba0063E18.r OP__Ba Oryza punctata genomic clo...    44   4.1    1
(CW692170) OP__Ba0058C17.r OP__Ba Oryza punctata genomic clo...    44   4.1    1
(BZ496451) BONKK07TF BO_1.6_2_KB_tot Brassica oleracea genom...    44   4.1    1
(EE525877) 37RDBRH_UP_047_G05_10JUL2004_035 Brassica rapa 37...    44   4.1    1
(EE449953) 76ETGS72_UP_007_G02_11MAY2005_004 76ETGS72 Brassi...    44   4.1    1
(EB145143) 021010ABCA002640HT (ABCA) Royal Gala fruit stored...    44   4.1    1
(EB144997) 010829ABCA002149HT (ABCA) Royal Gala fruit stored...    44   4.1    1
(EB144586) 010828ABCA001050HT (ABCA) Royal Gala fruit stored...    44   4.1    1
(DT934532) BAAC-PNP1278F10.g1 C.remanei EST SB146 Caenorhabd...    44   4.1    1
(AV196397) Caenorhabditis elegans cDNA clone:yk653f10 : 5' e...    44   4.1    1
(AV186164) Caenorhabditis elegans cDNA clone:yk495h8 : 5' en...    44   4.1    1
(AU269549) Dictyostelium discoideum vegetative cDNA clone:VS...    44   4.1    1
(AU269548) Dictyostelium discoideum vegetative cDNA clone:VS...    44   4.1    1
(AU061434) Dictyostelium discoideum slug cDNA, clone SLE231.       44   4.1    1
(D35937) Caenorhabditis elegans cDNA clone yk27c2 : 5' end, ...    44   4.1    1
(CV022717) Rasgscb0304 Salivary Gland 4th instar 3rd period ...    44   4.1    1
(CT789383) Paramecium tetraurelia 5-PRIME EST from clone LK0...    44   4.1    1
(CT737646) Paramecium tetraurelia 5-PRIME EST from clone LK0...    44   4.1    1
(CN993636) Mdfw2048c10.y1 Mdfw Malus x domestica cDNA clone ...    44   4.1    1
(CN578690) Mdfw2038i24.y1 Mdfw Malus x domestica cDNA clone ...    44   4.1    1
(CK810564) Rasgsc5506 Salivary Gland 4th instar 3rd period (...    44   4.1    1
(CK808999) Rasgsc2036 Salivary Gland 4th instar 3rd period (...    44   4.1    1
(CB386668) OSTF059F9_1 AD-wrmcDNA Caenorhabditis elegans cDN...    44   4.1    1
(C90129) Dictyostelium discoideum slug cDNA, clone SSI124.         44   4.1    1
(C44598) Caenorhabditis elegans cDNA clone yk371h9 : 5' end,...    44   4.1    1
(BJ323383) Dictyostelium discoideum cDNA clone:dda10g07, 5' ...    44   4.1    1
(FK714432) pl_034-C4 Ilyanassa (snail) 0-48h Ilyanassa obsol...    44   4.1    1
(EY939916) RS2E067TF RS2(RS) Raphanus sativus cDNA 5', mRNA ...    44   4.1    1
(EY935764) RS2E067JQ RS2(RS) Raphanus sativus cDNA 3', mRNA ...    44   4.1    1
(EX773488) RR4CS29TF RR4(PB) Raphanus raphanistrum subsp. la...    44   4.1    1
(EX069562) BR054206 seedling cDNA library KBPS Brassica rapa...    44   4.1    1
(EV210559) 0181749 Brassica napus Leaf - drought Brassica na...    44   4.1    1
(EV210290) 0181480 Brassica napus Leaf - drought Brassica na...    44   4.1    1
(EV200506) 0101659 Brassica napus Cold acclimation - light B...    44   4.1    1
(EV091132) 0187352 Brassica napus Apical meristem Brassica n...    44   4.1    1
(AE001272) Lactococcus lactis DPC3147 plasmid pMRC01, comple...    44   4.1    1
(AC178049) Strongylocentrotus purpuratus clone R3-1117F14, W...    40   4.2    2
(EI820867) POTEZ69TR Solanum tuberosum RHPOTKEY BAC ends Sol...    40   4.4    2
(EE053845) ZF30D-5_C2 Developmental library II Taeniopygia g...    40   4.6    2
(DC225985) Plasmodium berghei strain ANKA cDNA clone:SG00435...    34   4.7    2
(CT780845) Paramecium tetraurelia 5-PRIME EST from clone LK0...    40   5.2    2
(AC022426) Homo sapiens chromosome 5 clone CTD-2315O11, comp...    36   8.9    2
(DL005605) NUCLEIC ACID PROBES AND NUCLEIC ACID ANALOG PROBES.     36   8.9    2
(CS459530) Sequence 11 from Patent WO2006117596.                   36   8.9    2

>(AU053320) Dictyostelium discoideum slug cDNA, clone SLI382.
          Length = 423

 Score =  585 bits (295), Expect = e-163
 Identities = 295/295 (100%)
 Strand = Plus / Plus


Query: 1   catcaagagagaaaactagaaaagataaagcattagtattaacaacagatgatctttcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   catcaagagagaaaactagaaaagataaagcattagtattaacaacagatgatctttcat 60


Query: 61  tagcattaagagaatatggtattaacattagaaaacctgaatatttcgctgaaaatatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tagcattaagagaatatggtattaacattagaaaacctgaatatttcgctgaaaatatac 120


Query: 121 caccacaagaaattgatgaagctgctgctgcaaccaatgctgctgctttagctgtatcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caccacaagaaattgatgaagctgctgctgcaaccaatgctgctgctttagctgtatcaa 180


Query: 181 catcttcaactacaaccactacaacatcaaaagaatcaaaagaatcaaaagaatcaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 catcttcaactacaaccactacaacatcaaaagaatcaaaagaatcaaaagaatcaacaa 240


Query: 241 attctacaactgcaactgcaccaacaactccaaaagaagaatctggtgaatcttc 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 attctacaactgcaactgcaccaacaactccaaaagaagaatctggtgaatcttc 295

 Score = 46.1 bits (23), Expect = 1.0
 Identities = 23/23 (100%)
 Strand = Plus / Plus


Query: 215 atcaaaagaatcaaaagaatcaa 237
           |||||||||||||||||||||||
Sbjct: 206 atcaaaagaatcaaaagaatcaa 228

 Score = 46.1 bits (23), Expect = 1.0
 Identities = 23/23 (100%)
 Strand = Plus / Plus


Query: 206 atcaaaagaatcaaaagaatcaa 228
           |||||||||||||||||||||||
Sbjct: 215 atcaaaagaatcaaaagaatcaa 237

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 415,236,284
Number of extensions: 28075635
Number of successful extensions: 2255612
Number of sequences better than 10.0: 225
Length of query: 423
Length of database: 98,766,808,389
Length adjustment: 23
Effective length of query: 400
Effective length of database: 96,507,600,660
Effective search space: 38603040264000
Effective search space used: 38603040264000
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.16
Homology vs Protein 
Query= Contig-U15431-1 (Contig-U15431-1Q) /CSM_Contig/Contig-U15431-1Q.Seq.d
         (423 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT070545_1(BT070545|pid:none) Picea sitchensis clone WS02735_F07...    60   2e-08
AF344879_1(AF344879|pid:none) Arabidopsis thaliana putative TBP-...    54   2e-06
AM483532_1(AM483532|pid:none) Vitis vinifera contig VV78X259178....    52   5e-06
BT073861_1(BT073861|pid:none) Oncorhynchus mykiss clone omyk-evo...    51   1e-05
BT046561_1(BT046561|pid:none) Salmo salar clone ssal-evf-521-006...    50   3e-05
BT046950_1(BT046950|pid:none) Salmo salar clone ssal-sjb-020-036...    49   5e-05
AB116022_1(AB116022|pid:none) Flaveria trinervia TAF10 mRNA for ...    49   5e-05
BT040843_1(BT040843|pid:none) Zea mays full-length cDNA clone ZM...    48   9e-05
BT074337_1(BT074337|pid:none) Oncorhynchus mykiss clone omyk-evo...    46   5e-04
BT047315_1(BT047315|pid:none) Salmo salar clone ssal-evf-514-335...    46   5e-04
BT075397_1(BT075397|pid:none) Osmerus mordax clone omor-eva-503-...    46   5e-04
CR954201_120(CR954201|pid:none) Ostreococcus tauri strain OTTH05...    44   0.002
DQ214881_1(DQ214881|pid:none) Taeniopygia guttata clone 0063P000...    43   0.003
BX784025_12(BX784025|pid:none) Zebrafish DNA sequence from clone...    43   0.004
CP001574_131(CP001574|pid:none) Micromonas sp. RCC299 chromosome...    42   0.005
AY550064_1(AY550064|pid:none) Sus scrofa TBP-related factor 10 m...    42   0.007
DQ214878_1(DQ214878|pid:none) Taeniopygia guttata clone 0058P006...    42   0.007
BC142260_1(BC142260|pid:none) Bos taurus TAF10 RNA polymerase II...    42   0.007
(Q8K0H5) RecName: Full=Transcription initiation factor TFIID sub...    42   0.007
AJ249987_1(AJ249987|pid:none) Mus musculus TAFII30 gene for mTAF...    42   0.007
AK047115_1(AK047115|pid:none) Mus musculus 10 days neonate cereb...    42   0.007
(O60171) RecName: Full=Transcription initiation factor TFIID sub...    40   0.025
AC142095_22(AC142095|pid:none) Medicago truncatula clone mth2-14...    39   0.043
AE017351_307(AE017351|pid:none) Cryptococcus neoformans var. neo...    38   0.12
CR382124_717(CR382124|pid:none) Kluyveromyces lactis strain NRRL...    37   0.16
FN392319_954(FN392319|pid:none) Pichia pastoris GS115 chromosome...    36   0.36
(Q9U5W9) RecName: Full=Transcription initiation factor TFIID sub...    35   0.81
CR382137_859(CR382137|pid:none) Debaryomyces hansenii strain CBS...    34   1.4
CP000500_365(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...    33   2.4
FM992695_103(FM992695|pid:none) Candida dubliniensis CD36 chromo...    33   3.1

>BT070545_1(BT070545|pid:none) Picea sitchensis clone WS02735_F07
           unknown mRNA.  &EF081812_1(EF081812|pid:none)
          Length = 130

 Score = 60.5 bits (145), Expect = 2e-08
 Identities = 26/37 (70%), Positives = 35/37 (94%)
 Frame = +3

Query: 6   REKTRKDKALVLTTDDLSLALREYGINIRKPEYFAEN 116
           R+K +KDK+LVLTT+DLSLALREYG+N+++ EYFA+N
Sbjct: 82  RDKQQKDKSLVLTTEDLSLALREYGVNMKRQEYFADN 118

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 233,175,604
Number of extensions: 2138463
Number of successful extensions: 5999
Number of sequences better than 10.0: 30
Number of HSP's gapped: 5998
Number of HSP's successfully gapped: 30
Length of query: 141
Length of database: 1,051,180,864
Length adjustment: 104
Effective length of query: 37
Effective length of database: 714,578,728
Effective search space: 26439412936
Effective search space used: 26439412936
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
PSORT 

 psg: 0.69  gvh: 0.52  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: mitochondrial
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U15431-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0