Contig-U15427-1
Contig ID Contig-U15427-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15427-1 (Contig-U15427-1Q) /CSM_Contig/Contig-U15427-1Q.Seq.d
ATAATAATAATAATAATAAATAACAGTAATAAAAAAAAGAAAAAGAAAAA
GAAAAGAAAGAAAAAAATAAAAATAATAATAATCAAAACCAACACTCTTT
AATTCAAGAACGATGCTTATACATGTTTTCAAATCCAATTTTAAATAAAA
TAATTTTTATTGTAACATTATTAAA

Gap no gap
Contig length 175
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 2175659
End point 2175833
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U15427
List of clone(s)

est1=SLH303Z,1,175
Translated Amino Acid sequence
nnnnnk*q**KKEKEKEKKEKNKNNNNQNQHSLIQERCLYMFSNPILNKIIFIVTLL


Translated Amino Acid sequence (All Frames)
Frame A:
iiiiiinnsnkkkkkkkkrkkkikiiiiktntl*fkndaytcfqiqf*ik*fll*hy*


Frame B:
******itvikkrkrkrkerkk*k***skptlfnsrtmlihvfksnfk*nnfycniik


Frame C:
nnnnnk*q**KKEKEKEKKEKNKNNNNQNQHSLIQERCLYMFSNPILNKIIFIVTLL


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15427-1 (Contig-U15427-1Q)
/CSM_Contig/Contig-U15427-1Q.Seq.d
(175 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15427-1 (Contig-U15427-1Q) /CSM_Contig/Conti... 202 1e-52
Contig-U16116-1 (Contig-U16116-1Q) /CSM_Contig/Conti... 46 2e-05
Contig-U15977-1 (Contig-U15977-1Q) /CSM_Contig/Conti... 46 2e-05
Contig-U15852-1 (Contig-U15852-1Q) /CSM_Contig/Conti... 46 2e-05
Contig-U15758-1 (Contig-U15758-1Q) /CSM_Contig/Conti... 46 2e-05
Contig-U15650-1 (Contig-U15650-1Q) /CSM_Contig/Conti... 46 2e-05
Contig-U15643-1 (Contig-U15643-1Q) /CSM_Contig/Conti... 46 2e-05
Contig-U15626-1 (Contig-U15626-1Q) /CSM_Contig/Conti... 46 2e-05
Contig-U15464-1 (Contig-U15464-1Q) /CSM_Contig/Conti... 46 2e-05
Contig-U15380-1 (Contig-U15380-1Q) /CSM_Contig/Conti... 46 2e-05

>Contig-U15427-1 (Contig-U15427-1Q) /CSM_Contig/Contig-U15427-1Q.Seq.d
Length = 175

Score = 202 bits (102), Expect = 1e-52
Identities = 102/102 (100%)
Strand = Plus / Plus


Query: 74 taataataatcaaaaccaacactctttaattcaagaacgatgcttatacatgttttcaaa 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 taataataatcaaaaccaacactctttaattcaagaacgatgcttatacatgttttcaaa 133


Query: 134 tccaattttaaataaaataatttttattgtaacattattaaa 175
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 tccaattttaaataaaataatttttattgtaacattattaaa 175


Score = 60.0 bits (30), Expect = 1e-09
Identities = 30/30 (100%)
Strand = Plus / Plus


Query: 1 ataataataataataataaataacagtaat 30
||||||||||||||||||||||||||||||
Sbjct: 1 ataataataataataataaataacagtaat 30


>Contig-U16116-1 (Contig-U16116-1Q) /CSM_Contig/Contig-U16116-1Q.Seq.d
Length = 965

Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 1 ataataataataataataaataa 23
|||||||||||||||||||||||
Sbjct: 96 ataataataataataataaataa 118


Score = 38.2 bits (19), Expect = 0.004
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 1 ataataataataataataa 19
|||||||||||||||||||
Sbjct: 93 ataataataataataataa 111


Score = 34.2 bits (17), Expect = 0.065
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 3 aataataataataataa 19
|||||||||||||||||
Sbjct: 134 aataataataataataa 150


Score = 34.2 bits (17), Expect = 0.065
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 3 aataataataataataa 19
|||||||||||||||||
Sbjct: 92 aataataataataataa 108


Score = 32.2 bits (16), Expect = 0.26
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 1 ataataataataataa 16
||||||||||||||||
Sbjct: 135 ataataataataataa 150


>Contig-U15977-1 (Contig-U15977-1Q) /CSM_Contig/Contig-U15977-1Q.Seq.d
Length = 1200

Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 1 ataataataataataataaataa 23
|||||||||||||||||||||||
Sbjct: 1073 ataataataataataataaataa 1095


Score = 38.2 bits (19), Expect = 0.004
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 1 ataataataataataataa 19
|||||||||||||||||||
Sbjct: 1070 ataataataataataataa 1088


Score = 36.2 bits (18), Expect = 0.016
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 2 taataataataataataa 19
||||||||||||||||||
Sbjct: 891 taataataataataataa 908


Score = 36.2 bits (18), Expect = 0.016
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 2 taataataataataataa 19
||||||||||||||||||
Sbjct: 1068 taataataataataataa 1085


Score = 36.2 bits (18), Expect = 0.016
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 1 ataataataataataata 18
||||||||||||||||||
Sbjct: 746 ataataataataataata 763


Score = 34.2 bits (17), Expect = 0.065
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 1 ataataataataataat 17
|||||||||||||||||
Sbjct: 893 ataataataataataat 909


Score = 34.2 bits (17), Expect = 0.065
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 3 aataataataataataa 19
|||||||||||||||||
Sbjct: 745 aataataataataataa 761


Score = 32.2 bits (16), Expect = 0.26
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 3 aataataataataata 18
||||||||||||||||
Sbjct: 805 aataataataataata 820


Score = 30.2 bits (15), Expect = 1.0
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 1 ataataataataataataa 19
|||||||||||| ||||||
Sbjct: 809 ataataataatagtaataa 827


Score = 30.2 bits (15), Expect = 1.0
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 1 ataataataataataataa 19
|||||| ||||||||||||
Sbjct: 884 ataatattaataataataa 902


Score = 30.2 bits (15), Expect = 1.0
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 3 aataataataataat 17
|||||||||||||||
Sbjct: 1129 aataataataataat 1115


Score = 30.2 bits (15), Expect = 1.0
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 1 ataataataataata 15
|||||||||||||||
Sbjct: 806 ataataataataata 820


Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 6 aataataataataa 19
||||||||||||||
Sbjct: 805 aataataataataa 818


Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 1 ataataataataat 14
||||||||||||||
Sbjct: 1128 ataataataataat 1115


Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 6 aataataataataa 19
||||||||||||||
Sbjct: 1129 aataataataataa 1116


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 37,969
Number of Sequences: 8402
Number of extensions: 37969
Number of successful extensions: 26299
Number of sequences better than 10.0: 2670
length of query: 175
length of database: 8,075,542
effective HSP length: 15
effective length of query: 160
effective length of database: 7,949,512
effective search space: 1271921920
effective search space used: 1271921920
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 1.25
Homology vs DNA
Query= Contig-U15427-1 (Contig-U15427-1Q) /CSM_Contig/Contig-U15427-1Q.Seq.d
(175 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU039261) Dictyostelium discoideum slug cDNA, clone SLH303. 172 3e-39 1
(AF304344) Metriocnemus sp. JMA-2000 12S ribosomal RNA gene,... 38 4e-04 2
(AC172389) Strongylocentrotus purpuratus clone R3-14P13, WOR... 44 0.003 2
(CZ542829) SRAA-aad46d08.g1 Strongyloides ratti whole genome... 52 0.006 1
(AC110563) Mus musculus chromosome 3, clone RP23-287O4, comp... 50 0.025 1
(AC101978) Mus musculus chromosome 3, clone RP24-335I21, com... 50 0.025 1
(CE432023) tigr-gss-dog-17000362991761 Dog Library Canis lup... 50 0.025 1
(AC187465) Medicago truncatula chromosome 2 BAC clone mth2-6... 34 0.062 2
(DN583578) 92191393 Sea Urchin primary mesenchyme cell cDNA ... 40 0.077 2
(N97855) 1391C3 czapPFDd2.1, Debopam Chakrabarti Plasmodium ... 40 0.081 2
(BV027366) S212P60165FB1.T0 CZECHII/Ei Mus musculus STS geno... 48 0.10 1
(AC109281) Mus musculus chromosome 3, clone RP24-66E21, comp... 48 0.10 1
(AC099863) Mus musculus chromosome 3, clone RP23-6F2, comple... 48 0.10 1
(AC189721) Canis Familiaris, clone XX-284L8, complete sequence. 48 0.10 1
(AC188543) Canis familiaris chromosome 26, clone XX-397I18, ... 48 0.10 1
(AC187303) Canis Familiaris chromosome 20, clone XX-187A4, c... 48 0.10 1
(AC184810) Canis familiaris chromosome 26, clone XX-93E11, c... 48 0.10 1
(AC222588) Bos taurus clone CH240-445D18, WORKING DRAFT SEQU... 48 0.10 1
(AC192410) Canis lupus familiaris chromosome 10 clone 14_A_5... 48 0.10 1
(AC186979) Canis familiaris chromosome X clone XX-269O21 map... 48 0.10 1
(AC172895) Bos taurus clone CH240-270F24, WORKING DRAFT SEQU... 48 0.10 1
(AK045653) Mus musculus adult male corpora quadrigemina cDNA... 48 0.10 1
(CE638121) tigr-gss-dog-17000366768900 Dog Library Canis lup... 48 0.10 1
(CE589773) tigr-gss-dog-17000366387909 Dog Library Canis lup... 48 0.10 1
(CE551594) tigr-gss-dog-17000327477141 Dog Library Canis lup... 48 0.10 1
(CE505693) tigr-gss-dog-17000327358095 Dog Library Canis lup... 48 0.10 1
(CE445483) tigr-gss-dog-17000319071959 Dog Library Canis lup... 48 0.10 1
(CE265356) tigr-gss-dog-17000336935350 Dog Library Canis lup... 48 0.10 1
(CE114393) tigr-gss-dog-17000324989766 Dog Library Canis lup... 48 0.10 1
(BZ832442) CH240_270F24.TV CHORI-240 Bos taurus genomic clon... 48 0.10 1
(AC180368) Strongylocentrotus purpuratus clone R3-3116B21, W... 46 0.23 2
(AC079833) Homo sapiens BAC clone CTD-2170K17 from 2, comple... 44 0.28 2
(AF130814) Buchnera aphidicola natural-host Melaphis rhois N... 44 0.28 2
(AF154744) Toxomerus geminatus 12S ribosomal RNA gene, parti... 38 0.30 2
(AF154743) Toxomerus geminatus 12S ribosomal RNA gene, parti... 38 0.30 2
(AL928852) Zebrafish DNA sequence from clone CH211-287A12. 46 0.40 1
(AC193012) Pan troglodytes BAC clone CH251-424B9 from chromo... 46 0.40 1
(AC144613) Pan troglodytes BAC clone RP43-1F6 from chromosom... 46 0.40 1
(CS604809) Sequence 3795 from Patent WO2007039234. 46 0.40 1
(CS603161) Sequence 2147 from Patent WO2007039234. 46 0.40 1
(Z79599) Caenorhabditis elegans Cosmid F47C8. 46 0.40 1
(AF538053) Monosiga brevicollis mitochondrion, complete genome. 46 0.40 1
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 46 0.40 1
(AC011299) Homo sapiens BAC clone RP11-232C20 from 7, comple... 46 0.40 1
(AC026141) Homo sapiens chromosome 1 clone RP11-303O8 map 1,... 46 0.40 1
(AL159165) Human DNA sequence *** SEQUENCING CANCELLED *** f... 46 0.40 1
(AC212545) Saimiri boliviensis boliviensis clone CH254-455B7... 46 0.40 1
(AC201728) Callicebus moloch clone LB5-50F9, WORKING DRAFT S... 46 0.40 1
(AC186938) Callicebus moloch clone LB5-29H21, WORKING DRAFT ... 46 0.40 1
(EK152373) 1095456057773 Global-Ocean-Sampling_GS-31-01-01-1... 46 0.40 1
(EK133943) 1093011483602 Global-Ocean-Sampling_GS-31-01-01-1... 46 0.40 1
(EK118796) 1092963296783 Global-Ocean-Sampling_GS-31-01-01-1... 46 0.40 1
(EJ092018) 1095460201152 Global-Ocean-Sampling_GS-26-01-01-1... 46 0.40 1
(ED793893) GC5A208TF Coffea arabica WGS library, 0.8-2KB Cof... 46 0.40 1
(DX086185) AU_BAC010B1F08_Sp6 CHORI212 Ictalurus punctatus g... 46 0.40 1
(B48867) RPCI11-3M21.TP RPCI-11 Homo sapiens genomic clone R... 46 0.40 1
(DV603772) EST1206768 Glossina morsitans morsitans Fat body ... 46 0.40 1
(CK751992) wmi02-1ms1-g10 Wmi02 Welwitschia mirabilis cDNA c... 46 0.40 1
(EY372542) CAXA14063.rev CAXA Helobdella robusta Subtracted ... 46 0.40 1
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome. 46 0.40 1
(AC216654) Solanum lycopersicum chromosome 6 clone C06HBa022... 40 0.42 2
(AL391538) Human DNA sequence from clone RP11-334H12 on chro... 36 0.85 2
(AM499886) Epiperipatus sp. TB-2001 adult EST, clone bur-aro05. 34 1.1 2
(AL928821) Zebrafish DNA sequence from clone CH211-127N10. 38 1.4 3
(CR847562) Zebrafish DNA sequence from clone DKEY-151M24 in ... 44 1.6 1
(BX088594) Zebrafish DNA sequence from clone RP71-1G17 in li... 44 1.6 1
(AC158586) Mus musculus chromosome 5, clone RP24-372A2, comp... 44 1.6 1
(AC125402) Mus musculus BAC clone RP24-539G2 from chromosome... 44 1.6 1
(AC147039) Pan troglodytes BAC clone RP43-117G22 from chromo... 44 1.6 1
(AC146156) Pan troglodytes BAC clone RP43-1P23 from chromoso... 44 1.6 1
(AC145865) Pan troglodytes BAC clone RP43-20N5 from chromoso... 44 1.6 1
(AM487450) Vitis vinifera contig VV78X097654.5, whole genome... 44 1.6 1
(AM481618) Vitis vinifera contig VV78X204446.20, whole genom... 44 1.6 1
(AM466222) Vitis vinifera contig VV78X002183.5, whole genome... 44 1.6 1
(AM435998) Vitis vinifera, whole genome shotgun sequence, co... 44 1.6 1
(AL161559) Arabidopsis thaliana DNA chromosome 4, contig fra... 44 1.6 1
(AL022347) Arabidopsis thaliana DNA chromosome 4, BAC clone ... 44 1.6 1
(AC149479) Populus trichocarpa clone Pop1-017N13, complete s... 44 1.6 1
(AC149427) Populus trichocarpa clone Pop1-065A01, complete s... 44 1.6 1
(AX349036) Sequence 494 from Patent WO0202807. 44 1.6 1
(AC092022) Homo sapiens BAC clone RP11-750F10 from 7, comple... 44 1.6 1
(AC156070) Bos taurus clone CH240-52P23, WORKING DRAFT SEQUE... 44 1.6 1
(AC153709) Bos taurus clone CH240-21M24, WORKING DRAFT SEQUE... 44 1.6 1
(AC152029) Dasypus novemcinctus clone VMRC5-168B11, WORKING ... 44 1.6 1
(AC141528) Rattus norvegicus clone CH230-489K21, WORKING DRA... 44 1.6 1
(AC140117) Rattus norvegicus clone CH230-432N5, WORKING DRAF... 44 1.6 1
(AC135688) Rattus norvegicus clone CH230-499N13, *** SEQUENC... 44 1.6 1
(AC128415) Rattus norvegicus clone CH230-145K4, WORKING DRAF... 44 1.6 1
(AC119340) Rattus norvegicus clone CH230-354C16, *** SEQUENC... 44 1.6 1
(AC112578) Rattus norvegicus clone CH230-38G5, *** SEQUENCIN... 44 1.6 1
(AC105778) Rattus norvegicus clone CH230-213M11, *** SEQUENC... 44 1.6 1
(AC097024) Rattus norvegicus clone CH230-84J9, WORKING DRAFT... 44 1.6 1
(FP101864) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 1.6 1
(FP016122) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 1.6 1
(CU929420) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 1.6 1
(AC094415) Rattus norvegicus clone CH230-3N6, WORKING DRAFT ... 44 1.6 1
(AC093623) Homo sapiens chromosome UNK clone CTD-2335D13, **... 44 1.6 1
(AC092787) Homo sapiens chromosome UNK clone RP11-143P19, WO... 44 1.6 1
(CU467788) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 1.6 1
(CU463814) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 1.6 1
(AC232478) Brassica rapa subsp. pekinensis clone KBrB035J16,... 44 1.6 1
(AC230525) Bos taurus clone CH240-505P22, WORKING DRAFT SEQU... 44 1.6 1
(AC223461) Bos taurus clone CH240-468O4, WORKING DRAFT SEQUE... 44 1.6 1
(AC223458) Bos taurus clone CH240-468O11, WORKING DRAFT SEQU... 44 1.6 1
(AC222455) Bos taurus clone CH240-418L4, WORKING DRAFT SEQUE... 44 1.6 1
(AC209610) Aotus nancymaae clone CH258-105O17, WORKING DRAFT... 44 1.6 1
(AC204177) Aotus nancymaae clone CH258-222O9, WORKING DRAFT ... 44 1.6 1
(AC181591) Bos taurus clone CH240-398B4, WORKING DRAFT SEQUE... 44 1.6 1
(AC181123) Strongylocentrotus purpuratus clone R3-16J16, WOR... 44 1.6 1
(AC170317) Bos taurus clone CH240-275H3, WORKING DRAFT SEQUE... 44 1.6 1
(AC169729) Bos taurus clone CH240-196C16, WORKING DRAFT SEQU... 44 1.6 1
(FH704993) CHO_OF5170xb01r1.ab1 CHO_OF5 Nicotiana tabacum ge... 44 1.6 1
(FH530288) CHO_OF4729xl18f1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 1.6 1
(ER528680) 1093015731851 Global-Ocean-Sampling_GS-35-01-01-1... 44 1.6 1
(AM664105) Entamoeba moshkovskii FIC GSS, clone mosh040f03.p1k. 44 1.6 1
(AM654256) Entamoeba moshkovskii FIC GSS, clone mosh011c02.p1k. 44 1.6 1
(AM646592) Entamoeba moshkovskii FIC GSS, clone mosh040f03.q1k. 44 1.6 1
(EI760315) CHORI510R310K21TR BAC library from the primary ov... 44 1.6 1
(EI334233) GM_WBc0075F15.f GM_WBc Glycine max genomic clone ... 44 1.6 1
(ED680027) GM_WBb0012K14.r GM_WBb Glycine max genomic clone ... 44 1.6 1
(ED614734) GM_WBa0006L22.r GM_WBa Glycine max genomic clone ... 44 1.6 1
(DX556269) GH_MBb0085B07f GH_MBb Gossypium hirsutum genomic ... 44 1.6 1
(CZ503484) GMW2-12K14a.g1 GMW2 Glycine max genomic, genomic ... 44 1.6 1
(CW623771) OP__Ba0001J09.f OP__Ba Oryza punctata genomic clo... 44 1.6 1
(CL054483) CH216-79F24_RM1.1 CH216 Xenopus (Silurana) tropic... 44 1.6 1
(CG200571) PUFVL07TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 44 1.6 1
(CC209544) CH261-112F1_Sp6.1 CH261 Gallus gallus genomic clo... 44 1.6 1
(BZ053733) jnr40c11.b1 B.oleracea001 Brassica oleracea genom... 44 1.6 1
(BH960719) odd88h10.b1 B.oleracea002 Brassica oleracea genom... 44 1.6 1
(BH960708) odd88h09.b1 B.oleracea002 Brassica oleracea genom... 44 1.6 1
(ES376582) Oro_Retina_6-2_A11 Guppy pDNR_LIB Oropuche Retina... 44 1.6 1
(DY393064) CL__Eb0007M15.r CL__Eb Curcuma longa cDNA clone C... 44 1.6 1
(DV793073) HW_Loin_9_H12 Bos taurus CF-24-HW loin cDNA libra... 44 1.6 1
(AM858044) Crassostrea gigas EST, 5' end sequence, clone cdn... 44 1.6 1
(BP496342) Rattus norvegicus mRNA, clone:RI14387, 3' end, ex... 44 1.6 1
(BP485991) Rattus norvegicus mRNA, clone:RI02771, 3' end, ex... 44 1.6 1
(BI744676) rk91a06.y1 Meloidogyne javanica egg pAMP1 v6 Chia... 44 1.6 1
(BG666655) DRABRG05 Rat DRG Library Rattus norvegicus cDNA c... 44 1.6 1
(BF567943) UI-R-BO0-ahp-h-05-0-UI.r1 UI-R-BO0 Rattus norvegi... 44 1.6 1
(AM180355) Clostridium difficile 630 complete genome. 44 1.6 1
(BX000353) Zebrafish DNA sequence from clone DKEY-147H15. 36 2.3 2
(CT027823) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 2.4 2
(AF268063) Candidatus Carsonella ruddii natural-host Trioza ... 38 2.6 2
(AM438017) Vitis vinifera, whole genome shotgun sequence, co... 40 2.8 2
(AY068754) Schmidtea mediterranea clone H.109.1h unknown mRN... 34 2.9 2
(AQ992424) nbeb0091I01f CUGI Rice BAC Library (EcoRI) Oryza ... 40 2.9 2
(AC224815) Bos taurus clone CH240-475F14, WORKING DRAFT SEQU... 30 3.0 2
(AC220085) Bos taurus clone CH240-361P9, WORKING DRAFT SEQUE... 30 3.0 2
(AC208455) Zea mays chromosome 3 clone CH201-339M4; ZMMBBc03... 34 3.1 2
(AC210168) Zea mays chromosome 3 clone CH201-252A9; ZMMBBc02... 34 3.1 2
(AC016779) Genomic sequence for Oryza sativa clone 10N6, com... 34 3.1 2
(AC106544) Rattus norvegicus clone CH230-126B4, WORKING DRAF... 40 3.1 3
(BX004890) Zebrafish DNA sequence from clone DKEY-9A6 in lin... 38 3.3 4
(AM449533) Vitis vinifera, whole genome shotgun sequence, co... 30 3.4 2
(ER590730) 1093016196523 Global-Ocean-Sampling_GS-36-01-01-2... 32 4.0 2
(CG368107) OGWMB15TV ZM_0.7_1.5_KB Zea mays genomic clone ZM... 34 4.1 2
(EK171815) 1095458078550 Global-Ocean-Sampling_GS-31-01-01-1... 32 4.1 2
(CO074079) GR__Ea33P24.f GR__Ea Gossypium raimondii cDNA clo... 34 4.1 2
(BP150881) Sus scrofa mRNA, clone:OVRM10096E10, 5' end, expr... 30 4.1 2
(DU175953) 1098553246974 CHORI-243 Ovis aries genomic clone ... 34 4.1 2
(BH501984) BOGDF14TR BOGD Brassica oleracea genomic clone BO... 34 4.1 2
(DW274241) UI-S-GS1-acv-o-05-0-UI.s1 UI-S-GS1 Euprymna scolo... 32 4.1 2
(DU313585) 1098312119295 CHORI-243 Ovis aries genomic clone ... 34 4.1 2
(CU826814) A BAC library has been constructed from PN40024 g... 32 4.1 2
(CG248460) OGWMD15TV ZM_0.7_1.5_KB Zea mays genomic clone ZM... 34 4.3 2
(AC223550) Bos taurus clone CH240-466L3, WORKING DRAFT SEQUE... 40 4.7 3
(AC016989) Homo sapiens chromosome 5 clone RP11-213A19 map 5... 34 5.3 3
(AC177047) Strongylocentrotus purpuratus clone R3-38P16, WOR... 38 6.0 3
(CU467964) Zebrafish DNA sequence from clone DKEY-225N22 in ... 42 6.2 1
(CR855338) Zebrafish DNA sequence from clone CH211-247N2 in ... 42 6.2 1
(CR381551) Zebrafish DNA sequence from clone DKEY-203A12 in ... 42 6.2 1
(CR376836) Zebrafish DNA sequence from clone CH211-190O6 in ... 42 6.2 1
(BX572632) Zebrafish DNA sequence from clone CH211-162I20 in... 42 6.2 1
(BX323992) Zebrafish DNA sequence from clone DKEY-185B14 in ... 42 6.2 1
(AL929596) Zebrafish DNA sequence from clone DKEY-53H9. 42 6.2 1
(AL928946) Zebrafish DNA sequence from clone CH211-265D20 in... 42 6.2 1
(AC147440) Gallus gallus BAC clone CH261-49N7 from chromosom... 42 6.2 1
(L33180) Bombyx mori nuclear polyhedrosis virus isolate T3, ... 42 6.2 1
(GF082956) pRRL2:Newb:20080411:93033 USMARC Pig Breed SNP Di... 42 6.2 1
(Y08260) M.musculus mRNA for CPEB protein. 42 6.2 1
(AL807810) Mouse DNA sequence from clone RP23-186F3 on chrom... 42 6.2 1
(AC162897) Mus musculus chromosome 7, clone RP23-371C4, comp... 42 6.2 1
(AC161215) Mus musculus chromosome 7, clone RP24-185E6, comp... 42 6.2 1
(AC151906) Mus musculus BAC clone RP23-177B17 from chromosom... 42 6.2 1
(AC151267) Mus musculus BAC clone RP24-296E22 from chromosom... 42 6.2 1
(AC140786) Mus musculus BAC clone RP23-455E11 from chromosom... 42 6.2 1
(AC136516) Mus musculus BAC clone RP23-223E24 from 7, comple... 42 6.2 1
(AC130549) Mus musculus BAC clone RP24-456I3 from chromosome... 42 6.2 1
(AC122902) Mus musculus BAC clone RP23-40O6 from chromosome ... 42 6.2 1
(AC122531) Mus musculus BAC clone RP24-536C4 from 3, complet... 42 6.2 1
(AC118240) Mus musculus chromosome 16, clone RP23-186J5, com... 42 6.2 1
(AC090750) Mus musculus strain C57BL/6J clone rp23-329l13 ma... 42 6.2 1
(AC188799) Pan troglodytes BAC clone CH251-445N12 from chrom... 42 6.2 1
(CU915747) S.lycopersicum DNA sequence from clone SL_MboI-32... 42 6.2 1
(CR855060) Oryza sativa genomic DNA, chromosome 4, BAC clone... 42 6.2 1
(AP008210) Oryza sativa (japonica cultivar-group) genomic DN... 42 6.2 1
(AP000410) Arabidopsis thaliana genomic DNA, chromosome 3, T... 42 6.2 1
(AM484369) Vitis vinifera contig VV78X124949.10, whole genom... 42 6.2 1
(AM476221) Vitis vinifera contig VV78X160811.4, whole genome... 42 6.2 1
(AL731615) Oryza sativa genomic DNA, chromosome 4, BAC clone... 42 6.2 1
(AL353814) Arabidopsis thaliana DNA chromosome 3, BAC clone ... 42 6.2 1
(AC217588) Populus trichocarpa clone POP047-P10, complete se... 42 6.2 1
(AC215442) Solanum lycopersicum chromosome 2 clone C02SLe000... 42 6.2 1
(AC189331) Brassica rapa subsp. pekinensis clone KBrB037O12,... 42 6.2 1
(AC148528) Medicago truncatula clone mth2-53h4, complete seq... 42 6.2 1
(AC146584) Medicago truncatula clone mth2-68k18, complete se... 42 6.2 1
(AC136449) Medicago truncatula clone mth2-11k13, complete se... 42 6.2 1
(EA707509) Sequence 86388 from patent US 7365185. 42 6.2 1
(EA686781) Sequence 65660 from patent US 7365185. 42 6.2 1
(EA650997) Sequence 29876 from patent US 7365185. 42 6.2 1
(DD010736) Diagnosis of known genetic Parameters within the ... 42 6.2 1
(DD010735) Diagnosis of known genetic Parameters within the ... 42 6.2 1
(CS468864) Sequence 55 from Patent EP1748080. 42 6.2 1
(CS468863) Sequence 54 from Patent EP1748080. 42 6.2 1
(CS419341) Sequence 55 from Patent WO2006094836. 42 6.2 1
(CS419340) Sequence 54 from Patent WO2006094836. 42 6.2 1
(CQ597959) Sequence 25717 from Patent WO0171042. 42 6.2 1
(BD187789) A virus in which a gene for controlling an insect... 42 6.2 1
(AX346979) Sequence 2050 from Patent WO0200928. 42 6.2 1
(AX346978) Sequence 2049 from Patent WO0200928. 42 6.2 1
(AX344573) Sequence 24 from Patent WO0200932. 42 6.2 1
(AX344563) Sequence 14 from Patent WO0200932. 42 6.2 1
(AX344561) Sequence 12 from Patent WO0200932. 42 6.2 1
(AX344560) Sequence 11 from Patent WO0200932. 42 6.2 1
(AC175699) Tupaia belangeri, clone XX-8220E7, complete seque... 42 6.2 1
(AC155899) Loxodonta africana, clone Loxodonta africana-4339... 42 6.2 1
(Z99772) Caenorhabditis elegans Fosmid H05L14. 42 6.2 1
(U88315) Caenorhabditis elegans cosmid C37H5, complete seque... 42 6.2 1
(AY997523) Heteropsis pauper voucher E. Faure UPBD 48 cytoch... 42 6.2 1
(AY997519) Heteropsis pauper voucher E. Faure UPBD 44 cytoch... 42 6.2 1
(AY997517) Heteropsis pauper voucher E. Faure UPBD 42 cytoch... 42 6.2 1
(AY997511) Heteropsis pauper voucher E. Faure UPBD 36 cytoch... 42 6.2 1
(AY997510) Heteropsis pauper voucher E. Faure UPBD 35 cytoch... 42 6.2 1
(AY997504) Heteropsis pauper voucher E. Faure UPBD 29 cytoch... 42 6.2 1
(AY997499) Heteropsis pauper voucher E. Faure UPBD 23 cytoch... 42 6.2 1
(AY997498) Heteropsis pauper voucher E. Faure UPBD 22 cytoch... 42 6.2 1
(AY997497) Heteropsis pauper voucher E. Faure UPBD 21 cytoch... 42 6.2 1
(AY997493) Heteropsis pauper voucher E. Faure UPBD 15 cytoch... 42 6.2 1
(AY997492) Heteropsis pauper voucher E. Faure UPBD 13 cytoch... 42 6.2 1
(AY997481) Heteropsis pauper voucher E. Faure UPBD 11S cytoc... 42 6.2 1
(AY997472) Heteropsis pauper voucher E. Faure UPBD 1S cytoch... 42 6.2 1
(AY040195) Henotesia sp. Torres-7 cytochrome b (cytb) gene, ... 42 6.2 1
(AY040192) Henotesia subsimilis cytochrome b (cytb) gene, pa... 42 6.2 1
(AY040186) Henotesia pauper cytochrome b (cytb) gene, partia... 42 6.2 1
(AY040181) Henotesia sp. Torres-14 cytochrome b (cytb) gene,... 42 6.2 1
(AM940018) Glossina morsitans morsitans attA11 gene, attB ge... 42 6.2 1
(AE014135) Drosophila melanogaster chromosome 4, complete se... 42 6.2 1
(AC154031) Drosophila melanogaster clone CH223-18M04, comple... 42 6.2 1
(AC024776) Caenorhabditis elegans cosmid Y41D4B, complete se... 42 6.2 1
(AB265409) Xerodes rufescentarius gene for 16S rRNA, partial... 42 6.2 1
(DQ400449) Homo sapiens complement component 5 (C5) gene, co... 42 6.2 1
(AP002076) Homo sapiens genomic DNA, chromosome 4q22-q24, cl... 42 6.2 1
(AP001094) Homo sapiens genomic DNA, chromosome 18 clone:RP1... 42 6.2 1
(AL162388) Human DNA sequence from clone RP11-373A6 on chrom... 42 6.2 1
(AL160032) Human DNA sequence from clone RP11-474L7 on chrom... 42 6.2 1
(AL049837) Human chromosome 14 DNA sequence BAC R-959A22 of ... 42 6.2 1
(AC093680) Homo sapiens BAC clone RP11-656C2 from 4, complet... 42 6.2 1
(AC016920) Homo sapiens 3 BAC RP11-203L15 (Roswell Park Canc... 42 6.2 1
(AC008275) Homo sapiens BAC clone RP11-294I11 from 2, comple... 42 6.2 1
(AC007372) Homo sapiens chromosome 14 BAC containing gene fo... 42 6.2 1
(AC006430) Homo sapiens chromosome 9, clone RP11-525G7, comp... 42 6.2 1
(AC005229) Homo sapiens PAC clone RP5-1136G13 from 7q31-q35,... 42 6.2 1
(AC162094) Bos taurus clone CH240-106L16, WORKING DRAFT SEQU... 42 6.2 1
(AC160222) Loxodonta africana clone VMRC15-219C20, WORKING D... 42 6.2 1
(AC150716) Callithrix jacchus clone CH259-135E4, WORKING DRA... 42 6.2 1
(AC148268) Callithrix jacchus clone CH259-435H2, WORKING DRA... 42 6.2 1
(AC133835) Rattus norvegicus clone CH230-197A15, *** SEQUENC... 42 6.2 1
(AC131123) Rattus norvegicus clone CH230-5C18, WORKING DRAFT... 42 6.2 1
(AC128097) Rattus norvegicus clone CH230-324E24, WORKING DRA... 42 6.2 1
(AC125709) Rattus norvegicus clone CH230-37D9, *** SEQUENCIN... 42 6.2 1
(AC123888) Rattus norvegicus clone CH230-43J18, WORKING DRAF... 42 6.2 1
(AC118376) Rattus norvegicus clone CH230-71O15, *** SEQUENCI... 42 6.2 1
(AC117875) Rattus norvegicus clone CH230-366P15, WORKING DRA... 42 6.2 1
(AC117772) Mus musculus clone RP24-534J16, LOW-PASS SEQUENCE... 42 6.2 1
(AC112428) Rattus norvegicus clone CH230-114J9, *** SEQUENCI... 42 6.2 1
(AC110872) Homo sapiens chromosome 3 clone RP11-154N11, WORK... 42 6.2 1
(AC110155) Mus musculus clone RP23-150L18, LOW-PASS SEQUENCE... 42 6.2 1
(AC094604) Rattus norvegicus clone CH230-3K5, *** SEQUENCING... 42 6.2 1
(CU928232) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 6.2 1
(CU855927) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 6.2 1
(CU640442) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 6.2 1
(AC093403) Mus musculus chromosome 7 clone RP23-91P23, WORKI... 42 6.2 1
(AC087108) Homo sapiens chromosome 4 clone CTD-2321M3 map 4,... 42 6.2 1
(AC084747) Mus musculus clone RP23-364A14, WORKING DRAFT SEQ... 42 6.2 1
(CU481471) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 6.2 1
(CU467648) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 6.2 1
(CU462922) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 6.2 1
(CU062616) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 6.2 1
(CT030691) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***... 42 6.2 1
(CR933814) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 6.2 1
(AP001078) Homo sapiens genomic DNA, chromosome 18p11.3 clon... 42 6.2 1
(AC226827) Medicago truncatula chromosome 2 clone mth2-156k5... 42 6.2 1
(AC218219) Bos taurus clone CH240-290L12, WORKING DRAFT SEQU... 42 6.2 1
(AC217331) Oryza punctata clone OP__Ba0051F17, *** SEQUENCIN... 42 6.2 1
(AC215542) Oryza punctata clone OP__Ba0053H10, *** SEQUENCIN... 42 6.2 1
(AC210807) Zea mays chromosome 3 clone CH201-96P9; ZMMBBc009... 42 6.2 1
(AC207898) Zea mays chromosome 3 clone ZMMBBb-466B23; ZMMBBb... 42 6.2 1
(AC202313) Medicago truncatula clone mth2-144c7, WORKING DRA... 42 6.2 1
(AC197352) Zea mays chromosome 6 clone CH201-54E10; ZMMBBc00... 42 6.2 1
(AC195692) Myotis lucifugus clone CH235-297F9, WORKING DRAFT... 42 6.2 1
(AC194090) Zea mays chromosome 6 clone CH201-412M12; ZMMBBc0... 42 6.2 1
(AC191713) Zea mays chromosome 9 clone CH201-340N12; ZMMBBc0... 42 6.2 1
(AC189211) Brassica rapa subsp. pekinensis clone KBrB008C11,... 42 6.2 1
(AC171774) Loxodonta africana clone VMRC15-97G15, WORKING DR... 42 6.2 1
(AC165994) Bos taurus clone CH240-165I10, WORKING DRAFT SEQU... 42 6.2 1
(AC164785) Bos taurus clone CH240-154P1, *** SEQUENCING IN P... 42 6.2 1
(AC163643) Mus musculus chromosome 6 clone RP24-477O24, *** ... 42 6.2 1
(AC024683) Homo sapiens chromosome 14 clone RP11-177E17 map ... 42 6.2 1
(AC021310) Homo sapiens chromosome 18 clone RP11-408I22 map ... 42 6.2 1
(AC018170) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 42 6.2 1
(AC012143) Homo sapiens clone RP11-11G20, WORKING DRAFT SEQU... 42 6.2 1
(AC006760) Caenorhabditis elegans clone Y41D4, *** SEQUENCIN... 42 6.2 1
(AK136088) Mus musculus in vitro fertilized eggs cDNA, RIKEN... 42 6.2 1
(AK135615) Mus musculus adult male adrenal gland cDNA, RIKEN... 42 6.2 1
(AK133615) Mus musculus adult male pituitary gland cDNA, RIK... 42 6.2 1
(AK077799) Mus musculus adult male thymus cDNA, RIKEN full-l... 42 6.2 1
(BH136681) ENTOR72TF Entamoeba histolytica Sheared DNA Entam... 42 6.2 1
(BH133177) ENTMZ27TR Entamoeba histolytica Sheared DNA Entam... 42 6.2 1
(AZ538674) ENTFU71TR Entamoeba histolytica Sheared DNA Entam... 42 6.2 1
(AZ109973) RPCI-23-446H24.TJ RPCI-23 Mus musculus genomic cl... 42 6.2 1
(FI179409) MUGQ_CH252P189E09Sp6_CN284_043 CHORI-252 Vervet M... 42 6.2 1
(FH002612) CHO_OF278xc12r1.ab1 CHO_OF Nicotiana tabacum geno... 42 6.2 1
(ET865014) CHO_OF322xl02f1.ab1 CHO_OF Nicotiana tabacum geno... 42 6.2 1
(ER627844) 1093018339952 Global-Ocean-Sampling_GS-36-01-01-2... 42 6.2 1
(ER626588) 1093018210706 Global-Ocean-Sampling_GS-36-01-01-2... 42 6.2 1
(ER610941) 1093016309358 Global-Ocean-Sampling_GS-36-01-01-2... 42 6.2 1
(EK519766) 1095515514935 Global-Ocean-Sampling_GS-32-01-01-1... 42 6.2 1
(EK483014) 1095469530288 Global-Ocean-Sampling_GS-32-01-01-1... 42 6.2 1
(EK412797) 1095505210543 Global-Ocean-Sampling_GS-31-01-01-1... 42 6.2 1
(EK365452) 1095469395210 Global-Ocean-Sampling_GS-31-01-01-1... 42 6.2 1
(EK348170) 1095467585679 Global-Ocean-Sampling_GS-31-01-01-1... 42 6.2 1
(EK111749) 1092963120314 Global-Ocean-Sampling_GS-31-01-01-1... 42 6.2 1
(EK108867) 1092963079398 Global-Ocean-Sampling_GS-31-01-01-1... 42 6.2 1
(EK082134) 1092961111970 Global-Ocean-Sampling_GS-31-01-01-1... 42 6.2 1
(EK081526) 1092961107850 Global-Ocean-Sampling_GS-31-01-01-1... 42 6.2 1
(EK081341) 1092961106882 Global-Ocean-Sampling_GS-31-01-01-1... 42 6.2 1
(EK026820) 1092955374328 Global-Ocean-Sampling_GS-31-01-01-1... 42 6.2 1
(EJ880022) 1093018391833 Global-Ocean-Sampling_GS-30-02-01-1... 42 6.2 1
(EJ822271) 1093017543005 Global-Ocean-Sampling_GS-30-02-01-1... 42 6.2 1
(AM664875) Entamoeba moshkovskii FIC GSS, clone mosh111c02.q1k. 42 6.2 1
(AM657158) Entamoeba moshkovskii FIC GSS, clone mosh057d05.q1k. 42 6.2 1
(AM649083) Entamoeba moshkovskii FIC GSS, clone mosh064d07.p1k. 42 6.2 1
(EJ775206) 1092990702095 Global-Ocean-Sampling_GS-30-02-01-1... 42 6.2 1
(EJ737088) 1092961205405 Global-Ocean-Sampling_GS-30-02-01-1... 42 6.2 1
(EJ497248) 1095403582390 Global-Ocean-Sampling_GS-28-01-01-1... 42 6.2 1
(EJ432616) 1093015263927 Global-Ocean-Sampling_GS-28-01-01-1... 42 6.2 1
(EJ413316) 1093012163876 Global-Ocean-Sampling_GS-28-01-01-1... 42 6.2 1
(EJ376353) 1092963743817 Global-Ocean-Sampling_GS-28-01-01-1... 42 6.2 1
(EJ211870) 1092347008195 Global-Ocean-Sampling_GS-27-01-01-1... 42 6.2 1
(EI482263) PV_GBa0095C11.f PV_GBa Phaseolus vulgaris genomic... 42 6.2 1
(EI396605) MUGQ_CH252P211K09Sp6_CN332_037 CHORI-252 Vervet M... 42 6.2 1
(ED809284) ML__Ba0042J21r ML__Ba Mimulus lewisii genomic, ge... 42 6.2 1
(ED806302) MG__Bb0017H06f MG__Bb Mimulus guttatus genomic, g... 42 6.2 1
(ED744645) GM_WBb0108E12.r GM_WBb Glycine max genomic clone ... 42 6.2 1
(ED682476) GM_WBb0016B02.r GM_WBb Glycine max genomic clone ... 42 6.2 1
(ED672178) GM_WBb0001D15.f GM_WBb Glycine max genomic clone ... 42 6.2 1
(ED620391) GM_WBa0015C07.f GM_WBa Glycine max genomic clone ... 42 6.2 1
(DX912888) KBrH050L11F KBrH, Brassica rapa HindIII BAC libra... 42 6.2 1
(DX525420) GH_MBb0031F18f GH_MBb Gossypium hirsutum genomic ... 42 6.2 1
(DU043305) 159822 Tomato HindIII BAC Library Solanum lycoper... 42 6.2 1
(CZ733311) OC__Ba0065B03.r OC__Ba Oryza coarctata genomic cl... 42 6.2 1
(CZ498813) GMW2-16B2a.g1 GMW2 Glycine max genomic, genomic s... 42 6.2 1
(CZ173412) MIAA-24P16b.g1 Meloidogyne incognita BAC end sequ... 42 6.2 1
(CW942546) TcB24.1_D08_SP6 Tribolium BAC library Tribolium c... 42 6.2 1
(CT952249) Equus caballus GSS, BAC clone CH241-27C15, T7 end... 42 6.2 1
(CR351314) mte1-86P21FM1 BAC end, cultivar Jemalong A17 of M... 42 6.2 1
(CR143969) Reverse strand read from insert in 5'HPRT inserti... 42 6.2 1
(AG656003) Macaca fuscata fuscata DNA, clone: MSB2-073K01_F,... 42 6.2 1
(CG612320) OST298380 Mus musculus 129Sv/Ev Mus musculus cDNA... 42 6.2 1
(CE708359) tigr-gss-dog-17000369389905 Dog Library Canis lup... 42 6.2 1
(CE680514) tigr-gss-dog-17000329510027 Dog Library Canis lup... 42 6.2 1
(CE582279) tigr-gss-dog-17000366278720 Dog Library Canis lup... 42 6.2 1
(CE571946) tigr-gss-dog-17000313051429 Dog Library Canis lup... 42 6.2 1
(CE234779) tigr-gss-dog-17000333374997 Dog Library Canis lup... 42 6.2 1
(CC914736) t084b09ba.r1 TAMBT Bos taurus genomic clone t084b... 42 6.2 1
(BZ232416) CH230-476P24.TJ CHORI-230 Segment 2 Rattus norveg... 42 6.2 1
(BZ077540) lkz79d09.b1 B.oleracea002 Brassica oleracea genom... 42 6.2 1
(AV382096) Mus musculus adult male diencephalon cDNA, RIKEN ... 42 6.2 1
(AV380291) Mus musculus adult male epididymis cDNA, RIKEN fu... 42 6.2 1
(AV359517) Mus musculus egg female in vitro fertilized eggs ... 42 6.2 1
(AV357627) Mus musculus egg female in vitro fertilized eggs ... 42 6.2 1
(AV357503) Mus musculus egg female in vitro fertilized eggs ... 42 6.2 1
(AV357246) Mus musculus egg female in vitro fertilized eggs ... 42 6.2 1
(AV357191) Mus musculus egg female in vitro fertilized eggs ... 42 6.2 1
(AV347797) Mus musculus adult male olfactory brain cDNA, RIK... 42 6.2 1
(AV343397) Mus musculus adult male olfactory brain cDNA, RIK... 42 6.2 1
(EB824922) 1082656 KZ01 Plodia interpunctella cDNA clone 552... 42 6.2 1
(DV662100) DS214B_E05 Eppig Hampl Solter fully-grown mouse o... 42 6.2 1
(DV661596) DS208D_D12 Eppig Hampl Solter fully-grown mouse o... 42 6.2 1
(DV660409) DS193A_A10 Eppig Hampl Solter fully-grown mouse o... 42 6.2 1
(DV658417) DS166B_E04 Eppig Hampl Solter fully-grown mouse o... 42 6.2 1
(DV657139) DS150B_E10 Eppig Hampl Solter fully-grown mouse o... 42 6.2 1
(DV648292) DS038B_G03 Eppig Hampl Solter fully-grown mouse o... 42 6.2 1
(DT298913) JGI_CAAW9456.rev CAAW Pimephales promelas testis ... 42 6.2 1
(DT297308) JGI_CAAW7782.rev CAAW Pimephales promelas testis ... 42 6.2 1
(AV266498) Mus musculus adult male testis cDNA, RIKEN full-l... 42 6.2 1
(DT241812) JGI_CAAT12167.rev CAAT Pimephales promelas brain ... 42 6.2 1
(DT238208) JGI_CAAT10211.rev CAAT Pimephales promelas brain ... 42 6.2 1
(DT235036) JGI_CAAT8491.rev CAAT Pimephales promelas brain 7... 42 6.2 1
(DT230733) JGI_CAAT5006.rev CAAT Pimephales promelas brain 7... 42 6.2 1
(DT230475) JGI_CAAT4860.rev CAAT Pimephales promelas brain 7... 42 6.2 1
(DT229260) JGI_CAAT4198.rev CAAT Pimephales promelas brain 7... 42 6.2 1
(DT228185) JGI_CAAT3612.rev CAAT Pimephales promelas brain 7... 42 6.2 1
(DT223167) JGI_CAAT487.rev CAAT Pimephales promelas brain 7-... 42 6.2 1
(DT190375) JGI_ANNO53796.rev ANNO Pimephales promelas Whole ... 42 6.2 1
(DT153384) JGI_ANNO31361.rev ANNO Pimephales promelas Whole ... 42 6.2 1
(DT137913) JGI_ANNO17299.rev ANNO Pimephales promelas Whole ... 42 6.2 1
(DT137530) JGI_ANNO17081.rev ANNO Pimephales promelas Whole ... 42 6.2 1
(DN808383) 73954594 Sea Urchin primary mesenchyme cell cDNA ... 42 6.2 1
(DC230681) Plasmodium berghei strain ANKA cDNA clone:SG01942... 42 6.2 1
(AU220258) Caenorhabditis elegans cDNA clone:yk887d11 : 3' e... 42 6.2 1
(AU024112) Mus musculus unfertilized egg cDNA 3'-end sequenc... 42 6.2 1
(CO811672) AGENCOURT_30240801 NIH_MGC_257 Mus musculus cDNA ... 42 6.2 1
(CO809365) AGENCOURT_30254940 NIH_MGC_256 Mus musculus cDNA ... 42 6.2 1
(CO803180) AGENCOURT_30257266 NIH_MGC_256 Mus musculus cDNA ... 42 6.2 1
(AM089372) Lutzomyia longipalpis EST clone NSFM-110a07, sequ... 42 6.2 1
(CN777906) tad85g02.y2 Hydra EST Darmstadt I Hydra magnipapi... 42 6.2 1
(CK166267) FGAS050361 Triticum aestivum FGAS: TaLt7 Triticum... 42 6.2 1
(CJ204711) Mus musculus 1 cell embryo 1 cell cDNA, RIKEN ful... 42 6.2 1
(CJ204055) Mus musculus 1 cell embryo 1 cell cDNA, RIKEN ful... 42 6.2 1
(CJ190141) Mus musculus in vitro fertilized eggs cDNA, RIKEN... 42 6.2 1
(AJ927400) Theileria annulata EST, clone tam029f09_q1k. 42 6.2 1
(AI528597) mq82f06.x1 Stratagene mouse melanoma (#937312) Mu... 42 6.2 1
(BY456459) Mus musculus 10 days neonate brain cDNA, RIKEN fu... 42 6.2 1
(BW953673) Branchiostoma floridae cDNA, neurula clone:bfne12... 42 6.2 1
(BW901819) Branchiostoma floridae cDNA, neurula clone:bfne02... 42 6.2 1
(BW895043) Branchiostoma floridae cDNA, neurula clone:bfne12... 42 6.2 1
(BW844081) Branchiostoma floridae cDNA, neurula clone:bfne02... 42 6.2 1
(BW836318) Branchiostoma floridae cDNA, larva clone:bflv057g... 42 6.2 1
(BW832842) Branchiostoma floridae cDNA, larva clone:bflv047k... 42 6.2 1
(BW716878) Branchiostoma floridae cDNA, adult clone:bfad024e... 42 6.2 1
(BW698249) Branchiostoma floridae cDNA, adult clone:bfad024e... 42 6.2 1
(BU663078) cl95g02.z1 Hembase; Erythroid Precursor Cells (LC... 42 6.2 1
(BQ575550) UI-H-EZ1-bbf-m-23-0-UI.s1 NCI_CGAP_Ch2 Homo sapie... 42 6.2 1
(BP772565) Mus musculus mRNA, clone: mie35012, 3' end, expre... 42 6.2 1
(BP768759) Mus musculus mRNA, clone: mid37096, 3' end, expre... 42 6.2 1
(BM416577) OP21676 Mixed Stage EST's from Globodera pallida,... 42 6.2 1
(BJ790474) Caenorhabditis elegans cDNA clone:yk1638a10 : 3' ... 42 6.2 1
(BJ372991) Dictyostelium discoideum cDNA clone:ddc15b09, 3' ... 42 6.2 1
(BG068906) H3070F01-3 NIA Mouse 15K cDNA Clone Set Mus muscu... 42 6.2 1
(AA823218) vw42b04.r1 Soares_mammary_gland_NbMMG Mus musculu... 42 6.2 1
(AA509767) vh52d11.r1 Soares_mammary_gland_NbMMG Mus musculu... 42 6.2 1
(BF228000) uz38d05.x1 NCI_CGAP_Mam5 Mus musculus cDNA clone ... 42 6.2 1
(BB812972) Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-l... 42 6.2 1
(BB706391) Mus musculus in vitro fertilized eggs cDNA, RIKEN... 42 6.2 1
(BB702953) Mus musculus in vitro fertilized eggs cDNA, RIKEN... 42 6.2 1
(BB701408) Mus musculus in vitro fertilized eggs cDNA, RIKEN... 42 6.2 1
(BB695792) Mus musculus 2 days neonate sympathetic ganglion ... 42 6.2 1
(BB223504) Mus musculus adult male aorta and vein cDNA, RIKE... 42 6.2 1
(FK848527) K06021F09 Karenia brevis Multi-strain Library Kar... 42 6.2 1
(FK213839) XABT219516.g1 Gateway compatible cien cDNA librar... 42 6.2 1
(BB060065) Mus musculus egg female in vitro fertilized eggs ... 42 6.2 1
(BB033353) Mus musculus adult male thymus cDNA, RIKEN full-l... 42 6.2 1
(FK097419) XABT146835.g1 Gateway compatible cien cDNA librar... 42 6.2 1
(FF465807) G50P6282RB2.T0 Acorn worm gastrula/neurula pCMVSp... 42 6.2 1
(FF450939) G178P60134RB2.T0 Acorn worm gastrula/neurula pCMV... 42 6.2 1
(AW519422) un04a06.x1 Sugano mouse kidney mkia Mus musculus ... 42 6.2 1
(EV457615) 159-123-H01 Fundulus heteroclitus 159 Fundulus he... 42 6.2 1
(EV457408) 159-121-F09 Fundulus heteroclitus 159 Fundulus he... 42 6.2 1
(AA422864) vd29h05.s1 Knowles Solter mouse 2 cell Mus muscul... 42 6.2 1
(AA422742) vd29f05.s1 Knowles Solter mouse 2 cell Mus muscul... 42 6.2 1
(AA420350) vd01g04.s1 Knowles Solter mouse 2 cell Mus muscul... 42 6.2 1
(AA415529) vd18g03.s1 Knowles Solter mouse 2 cell Mus muscul... 42 6.2 1
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 42 6.2 1
(AE017143) Haemophilus ducreyi strain 35000HP complete genome. 42 6.2 1
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)... 42 6.2 1
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 42 6.2 1
(AC216320) Pteropus vampyrus clone CH279-18L11, WORKING DRAF... 40 6.9 2
(AL035331) Drosophila melanogaster cosmid clone 33C11. 34 7.4 2
(AY534144) Saprolegnia ferax strain ATCC 36051 mitochondion,... 36 7.5 3
(AC011670) Homo sapiens chromosome 5 clone RP11-138H1 map 5,... 38 7.5 2
(CU914724) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 7.6 3
(EH214253) USDA-FP_177037 WHMH (pink hibiscus mealybug) Maco... 30 7.7 3
(AC161396) Bos taurus clone CH240-69P7, WORKING DRAFT SEQUEN... 38 7.9 2
(CU302299) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 9.1 2
(CP000153) Sulfurimonas denitrificans DSM 1251, complete gen... 32 9.1 2
(AC111223) Rattus norvegicus clone CH230-120K5, *** SEQUENCI... 38 9.4 3

>(AU039261) Dictyostelium discoideum slug cDNA, clone SLH303.
Length = 175

Score = 172 bits (87), Expect = 3e-39
Identities = 87/87 (100%)
Strand = Plus / Plus


Query: 89 ccaacactctttaattcaagaacgatgcttatacatgttttcaaatccaattttaaataa 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 ccaacactctttaattcaagaacgatgcttatacatgttttcaaatccaattttaaataa 148


Query: 149 aataatttttattgtaacattattaaa 175
|||||||||||||||||||||||||||
Sbjct: 149 aataatttttattgtaacattattaaa 175

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 172,250,653
Number of extensions: 15520715
Number of successful extensions: 4864938
Number of sequences better than 10.0: 482
Length of query: 175
Length of database: 98,766,808,389
Length adjustment: 22
Effective length of query: 153
Effective length of database: 96,605,827,083
Effective search space: 14780691543699
Effective search space used: 14780691543699
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 7.16
Homology vs Protein
Query= Contig-U15427-1 (Contig-U15427-1Q) /CSM_Contig/Contig-U15427-1Q.Seq.d
(175 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 143,649,768
Number of extensions: 1789415
Number of successful extensions: 1655
Number of sequences better than 10.0: 0
Number of HSP's gapped: 1655
Number of HSP's successfully gapped: 0
Length of query: 58
Length of database: 1,051,180,864
Length adjustment: 31
Effective length of query: 27
Effective length of database: 950,847,535
Effective search space: 25672883445
Effective search space used: 25672883445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 26 (14.6 bits)

PSORT

psg: 0.32 gvh: 0.28 alm: 0.35 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: nuclear
32.0 %: cytoplasmic
4.0 %: cytoskeletal

>> prediction for Contig-U15427-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0