Contig-U15425-1
Contig ID Contig-U15425-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15425-1 (Contig-U15425-1Q) /CSM_Contig/Contig-U15425-1Q.Seq.d
ATTCAACTACTACCACTGCCACCGCCACCACCACTACTGATGATTCCACT
GAAAATAAAGAAGAAAAGAAAGACAAAAAAACAACTAAAAAACCAGCCGC
CGCTGAAAAAAAGAAAGTTAAAAAAGATGGTGATGATGATGAAACTGCTG
CTGCTGCCACTGAGGAGAAAAAGGATGAAGAGAAATCTGAAGAAAAAGAG
AAAAAAGAAACTAAAAAACCAGCTGCACCAAAGAAACCAGCTGCCGCTGA
AAAAAAGAGAACCGCTGCAAATCCAACCGATAAAAAAGATGGTGAAAATA
AAGATGTAACTCCATCTGATGATAAACCAGCTGCTACCACCACCACCACC
ACCGCCGCCGCTGCAACCACCACTGAAGAACCAAAAGAAAAGATAACAAA
ACCAGCCGCTGATAAAAAGAAAGCACCAGCAAACAAAAAAGCTGAAAAAG
ACCAATCATCATCTGATGAATCTGCCAACAAAGAGACAACCACCGCCACC
ACTACCACCACTAACAAAGATGCCACCGCTCCAAATACCACCACCAACAA
AGATGCCACCGCTCCAACTACCACAACCACTAAAGATAATGTGGATGAAG
CCTCAGTAGAAAAGACAGCCAACTCAGCCCCAAAAAAGGATGCATCCGAA
AAATAAATCAAAATAAATCAATTAAACCAATTTAAACAGGAAAAAAAAAT
AAAAGA

Gap no gap
Contig length 706
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 4325568
End point 4326273
Strand (PLUS/MINUS) PLUS
Number of clones 4
Number of EST 4
Link to clone list U15425
List of clone(s)

est1=FC-BN11E,1,706
est2=FC-BP20E,1,706
est3=FC-BQ03Z,74,706
est4=SLF612F,74,213
Translated Amino Acid sequence
STTTTATATTTTDDSTENKEEKKDKKTTKKPAAAEKKKVKKDGDDDETAAAATEEKKDEE
KSEEKEKKETKKPAAPKKPAAAEKKRTAANPTDKKDGENKDVTPSDDKPAATTTTTTAAA
ATTTEEPKEKITKPAADKKKAPANKKAEKDQSSSDESANKETTTATTTTTNKDATAPNTT
TNKDATAPTTTTTKDNVDEASVEKTANSAPKKDASEK*ikinqlnqfkqekkik


Translated Amino Acid sequence (All Frames)
Frame A:
iqllplpppppllmiplkikkkrktkkqlknqpplkkrklkkmvmmmkllllplrrkrmk
rnlkkkrkkklknqlhqrnqlplkkreplqiqpikkmvkikm*lhlminqllpppppppp
lqpplknqkkr*qnqplikrkhqqtkklkktnhhlmnlptkrqpppplppltkmpplqip
pptkmpplqlpqplkimwmkpq*krqptqpqkrmhpknksk*in*tnlnrkkk*k


Frame B:
fnyyhchrhhhy**fh*k*rrkerqknn*ktsrr*kkes*krw****ncccch*gekg*r
ei*rkrekrn*ktsctketscr*kkenrcksnr*krw*k*rcnsi***tscyhhhhhrrr
cnhh*rtkrkdnktsr**kestskqks*krpiii**icqqrdnhrhhyhh*qrchrskyh
hqqrchrsnyhnh*r*cg*slsrkdsqlspkkgcirkinqnksikpi*tgkknkr


Frame C:
STTTTATATTTTDDSTENKEEKKDKKTTKKPAAAEKKKVKKDGDDDETAAAATEEKKDEE
KSEEKEKKETKKPAAPKKPAAAEKKRTAANPTDKKDGENKDVTPSDDKPAATTTTTTAAA
ATTTEEPKEKITKPAADKKKAPANKKAEKDQSSSDESANKETTTATTTTTNKDATAPNTT
TNKDATAPTTTTTKDNVDEASVEKTANSAPKKDASEK*ikinqlnqfkqekkik


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15425-1 (Contig-U15425-1Q)
/CSM_Contig/Contig-U15425-1Q.Seq.d
(706 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15425-1 (Contig-U15425-1Q) /CSM_Contig/Conti... 482 e-136
Contig-U13043-1 (Contig-U13043-1Q) /CSM_Contig/Conti... 58 2e-08
Contig-U16026-1 (Contig-U16026-1Q) /CSM_Contig/Conti... 48 2e-05
Contig-U11573-1 (Contig-U11573-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U10975-1 (Contig-U10975-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U15784-1 (Contig-U15784-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U15042-1 (Contig-U15042-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U14187-1 (Contig-U14187-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U11146-1 (Contig-U11146-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U03082-1 (Contig-U03082-1Q) /CSM_Contig/Conti... 42 0.001

>Contig-U15425-1 (Contig-U15425-1Q) /CSM_Contig/Contig-U15425-1Q.Seq.d
Length = 706

Score = 482 bits (243), Expect = e-136
Identities = 243/243 (100%)
Strand = Plus / Plus


Query: 448 aagaccaatcatcatctgatgaatctgccaacaaagagacaaccaccgccaccactacca 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aagaccaatcatcatctgatgaatctgccaacaaagagacaaccaccgccaccactacca 507


Query: 508 ccactaacaaagatgccaccgctccaaataccaccaccaacaaagatgccaccgctccaa 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ccactaacaaagatgccaccgctccaaataccaccaccaacaaagatgccaccgctccaa 567


Query: 568 ctaccacaaccactaaagataatgtggatgaagcctcagtagaaaagacagccaactcag 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ctaccacaaccactaaagataatgtggatgaagcctcagtagaaaagacagccaactcag 627


Query: 628 ccccaaaaaaggatgcatccgaaaaataaatcaaaataaatcaattaaaccaatttaaac 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ccccaaaaaaggatgcatccgaaaaataaatcaaaataaatcaattaaaccaatttaaac 687


Query: 688 agg 690
|||
Sbjct: 688 agg 690


Score = 190 bits (96), Expect = 2e-48
Identities = 110/117 (94%)
Strand = Plus / Plus


Query: 219 ccagctgcaccaaagaaaccagctgccgctgnnnnnnngagaaccgctgcaaatccaacc 278
||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 219 ccagctgcaccaaagaaaccagctgccgctgaaaaaaagagaaccgctgcaaatccaacc 278


Query: 279 gataaaaaagatggtgaaaataaagatgtaactccatctgatgataaaccagctgct 335
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gataaaaaagatggtgaaaataaagatgtaactccatctgatgataaaccagctgct 335


Score = 99.6 bits (50), Expect = 6e-21
Identities = 50/50 (100%)
Strand = Plus / Plus


Query: 1 attcaactactaccactgccaccgccaccaccactactgatgattccact 50
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attcaactactaccactgccaccgccaccaccactactgatgattccact 50


Score = 75.8 bits (38), Expect = 8e-14
Identities = 38/38 (100%)
Strand = Plus / Plus


Query: 126 gatggtgatgatgatgaaactgctgctgctgccactga 163
||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gatggtgatgatgatgaaactgctgctgctgccactga 163


Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus


Query: 354 gccgccgctgcaaccaccactgaagaacca 383
||||||||||||||||||||||||||||||
Sbjct: 354 gccgccgctgcaaccaccactgaagaacca 383


Score = 30.2 bits (15), Expect = 4.4
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 281 taaaaaagatggtga 295
|||||||||||||||
Sbjct: 119 taaaaaagatggtga 133


>Contig-U13043-1 (Contig-U13043-1Q) /CSM_Contig/Contig-U13043-1Q.Seq.d
Length = 861

Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus


Query: 3 tcaactactaccactgccaccgccaccaccactactg 39
|||||||||||||| ||||||| ||||||||||||||
Sbjct: 549 tcaactactaccaccgccaccgacaccaccactactg 585


>Contig-U16026-1 (Contig-U16026-1Q) /CSM_Contig/Contig-U16026-1Q.Seq.d
Length = 997

Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus


Query: 221 agctgcaccaaagaaaccagctgc 244
||||||||||||||||||||||||
Sbjct: 525 agctgcaccaaagaaaccagctgc 548


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,074
Number of Sequences: 8402
Number of extensions: 14074
Number of successful extensions: 3306
Number of sequences better than 10.0: 461
length of query: 706
length of database: 8,075,542
effective HSP length: 16
effective length of query: 690
effective length of database: 7,941,110
effective search space: 5479365900
effective search space used: 5479365900
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.25
Homology vs DNA
Query= Contig-U15425-1 (Contig-U15425-1Q) /CSM_Contig/Contig-U15425-1Q.Seq.d
(706 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU284857) Dictyostelium discoideum gamete cDNA clone:FC-BN1... 159 e-133 6
(AU284917) Dictyostelium discoideum gamete cDNA clone:FC-BP2... 151 e-116 6
(AU284924) Dictyostelium discoideum gamete cDNA clone:FC-BQ0... 151 e-102 5
(AU033802) Dictyostelium discoideum slug cDNA, clone SLB457. 151 4e-88 4
(AU053066) Dictyostelium discoideum slug cDNA, clone SLF612. 143 5e-44 2
(AU053806) Dictyostelium discoideum slug cDNA, clone SLJ725. 131 4e-27 2
(BJ405923) Dictyostelium discoideum cDNA clone:dds33c15, 3' ... 84 2e-23 2
(AU061737) Dictyostelium discoideum slug cDNA, clone SLF612. 78 5e-10 1
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 58 5e-04 1
(BJ381648) Dictyostelium discoideum cDNA clone:ddc42p02, 3' ... 58 5e-04 1
(EY348679) CAWZ16624.fwd CAWZ Helobdella robusta Primary Lat... 56 0.002 1
(EY348678) CAWZ16624.rev CAWZ Helobdella robusta Primary Lat... 56 0.002 1
(AC098170) Rattus norvegicus clone CH230-153L21, *** SEQUENC... 52 0.029 1
(AC229773) Oryza minuta clone OM__Ba0120E20, *** SEQUENCING ... 52 0.029 1
(AC218022) Oryza officinalis clone OO__Ba0116A23, *** SEQUEN... 52 0.029 1
(EH653281) EST04162 Paracoccidioides brasiliensis pCMV-SPORT... 46 0.057 2
(CN245696) EST011579 Mycelium and yeast cells from Paracocci... 46 0.066 2
(DH463453) Monosiga ovata DNA, fosmid clone: MOF-003H03, gen... 42 0.068 2
(AC134206) Rattus norvegicus clone CH230-111F23, *** SEQUENC... 50 0.11 1
(AC129041) Rattus norvegicus clone CH230-106J6, *** SEQUENCI... 50 0.11 1
(AC128532) Rattus norvegicus clone CH230-13L5, WORKING DRAFT... 50 0.11 1
(AC180709) Strongylocentrotus purpuratus clone R3-3084B23, W... 50 0.11 1
(CW925438) EDCBA61TR A. castellanii, 6-8 kb library from tot... 50 0.11 1
(EH063922) PMDBY07TO Perkinsus marinus small insert cDNA lib... 50 0.11 1
(EY318396) CAWX6358.fwd CAWX Helobdella robusta Primary Earl... 50 0.11 1
(AF362374) Dictyostelium discoideum histidine kinase DhkM (d... 48 0.35 2
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 40 0.43 3
(U81036) Rattus norvegicus ankyrin binding cell adhesion mol... 48 0.45 1
(L11002) Rat ankyrin binding glycoprotein-1 related mRNA seq... 48 0.45 1
(AL683879) Mouse DNA sequence from clone RP23-36D5 on chromo... 48 0.45 1
(AC164979) Mus musculus BAC clone RP23-244J23 from chromosom... 48 0.45 1
(AC154773) Mus musculus BAC clone RP24-448I5 from chromosome... 48 0.45 1
(AC154717) Mus musculus BAC clone RP24-369E16 from chromosom... 48 0.45 1
(AC154187) Mus musculus BAC clone RP24-444N2 from chromosome... 48 0.45 1
(AY764183) Aplysia californica syntaxin mRNA, complete cds. 48 0.45 1
(AC134289) Rattus norvegicus clone CH230-30M22, *** SEQUENCI... 48 0.45 1
(AC125983) Rattus norvegicus clone CH230-228H9, *** SEQUENCI... 48 0.45 1
(AC112869) Rattus norvegicus clone CH230-233P5, WORKING DRAF... 48 0.45 1
(AC106691) Rattus norvegicus clone CH230-223J21, *** SEQUENC... 48 0.45 1
(AC105703) Rattus norvegicus clone CH230-57I23, WORKING DRAF... 48 0.45 1
(AC093959) Rattus norvegicus clone CH230-3B9, WORKING DRAFT ... 48 0.45 1
(AC206995) Zea mays chromosome 4 clone CH201-114O16; ZMMBBc0... 48 0.45 1
(AC203886) Zea mays chromosome 4 clone CH201-115B20; ZMMBBc0... 48 0.45 1
(AC180962) Strongylocentrotus purpuratus clone R3-3058N17, W... 48 0.45 1
(AZ983358) 2M0264C04R Mouse 10kb plasmid UUGC2M library Mus ... 48 0.45 1
(DW043497) SL521 Subtracted cDNA library of Vaccinium corymb... 48 0.45 1
(DC617604) Lethenteron japonicum cDNA, clone: Lamprey_liver_... 48 0.45 1
(CV091460) NA558 cDNA non acclimated Bluecrop library Vaccin... 48 0.45 1
(BJ353727) Dictyostelium discoideum cDNA clone:dda51a08, 3' ... 48 0.45 1
(FE490495) CAOT4519.rev CAOT Selaginella moellendorffii mixe... 48 0.45 1
(EY334165) CAWY6173.fwd CAWY Helobdella robusta Subtracted E... 48 0.45 1
(EY331172) CAWY3992.fwd CAWY Helobdella robusta Subtracted E... 48 0.45 1
(BA000037) Vibrio vulnificus YJ016 DNA, chromosome I, comple... 48 0.45 1
(AY588380) Humulus lupulus clone HlCAG6 microsatellite seque... 42 0.60 2
(AJ893561) Procavia capensis partial ar gene for androgen re... 38 1.1 3
(AC179778) Strongylocentrotus purpuratus clone R3-1015N15, W... 42 1.1 3
(EH287114) Q4_Reed_1DPH_cDNA_06_B04_050.F 1d_posthatch Melea... 38 1.1 2
(AB205156) Lethenteron japonicum CNP mRNA for C-type natriur... 44 1.3 2
(AC181321) Strongylocentrotus purpuratus clone R3-115E19, WO... 44 1.4 2
(BX375867) human full-length cDNA 3-PRIME end of clone CS0DC... 38 1.5 2
(CU539059) Zebrafish DNA sequence from clone CH1073-386G6 in... 46 1.8 1
(AC093960) Rattus norvegicus Iddm BAC CH230-4G13 (Children's... 46 1.8 1
(AY022746) Oryza sativa microsatellite MRG5071 containing (C... 46 1.8 1
(AP009648) Lotus japonicus genomic DNA, chromosome 3, clone:... 46 1.8 1
(AP008212) Oryza sativa (japonica cultivar-group) genomic DN... 46 1.8 1
(AP006375) Lotus japonicus genomic DNA, chromosome 4, clone:... 46 1.8 1
(AP003539) Oryza sativa Japonica Group genomic DNA, chromoso... 46 1.8 1
(EA715229) Sequence 94108 from patent US 7365185. 46 1.8 1
(DQ655702) Anopheles gambiae Jxc1 mRNA, partial cds. 46 1.8 1
(AL121652) BAC sequence from the SPG4 candidate region at 2p... 46 1.8 1
(AC092667) Homo sapiens BAC clone RP11-549H5 from 2, complet... 46 1.8 1
(AC087431) Homo sapiens chromosome 3 clone RP11-775C23 map 3... 46 1.8 1
(AC012619) Homo sapiens chromosome 5 clone CTD-2022K1, compl... 46 1.8 1
(AC012364) Homo sapiens BAC clone RP11-444D15 from 2, comple... 46 1.8 1
(AC137187) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 46 1.8 1
(AC135655) Rattus norvegicus clone CH230-69O8, *** SEQUENCIN... 46 1.8 1
(AC134482) Rattus norvegicus clone CH230-179K4, *** SEQUENCI... 46 1.8 1
(AC134480) Rattus norvegicus clone CH230-115H22, *** SEQUENC... 46 1.8 1
(AC131445) Rattus norvegicus clone CH230-3L19, WORKING DRAFT... 46 1.8 1
(AC126517) Rattus norvegicus clone CH230-55H4, *** SEQUENCIN... 46 1.8 1
(AC119421) Papio anubis clone rp41-127o23, WORKING DRAFT SEQ... 46 1.8 1
(AC114123) Rattus norvegicus clone CH230-30G21, WORKING DRAF... 46 1.8 1
(AC107169) Rattus norvegicus clone CH230-69H23, *** SEQUENCI... 46 1.8 1
(CU539058) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.8 1
(AP007906) Lotus japonicus genomic DNA, chromosome 4, clone:... 46 1.8 1
(AP003938) Oryza sativa Japonica Group genomic DNA, chromoso... 46 1.8 1
(AC179811) Strongylocentrotus purpuratus clone R3-1013K2, WO... 46 1.8 1
(AC178592) Strongylocentrotus purpuratus clone R3-113N07, WO... 46 1.8 1
(AC176877) Strongylocentrotus purpuratus clone R3-31G1, WORK... 46 1.8 1
(AC170774) Bos taurus clone CH240-252P20, WORKING DRAFT SEQU... 46 1.8 1
(AC023353) Homo sapiens chromosome 20 clone RP11-775C23, WOR... 46 1.8 1
(AC012605) Homo sapiens chromosome 5 clone CTC-481A8, WORKIN... 46 1.8 1
(AC010981) Homo sapiens chromosome 2 clone RP11-431P19, WORK... 46 1.8 1
(FI240517) CccaBb015-B16JR CccABb Cajanus cajan genomic clon... 46 1.8 1
(DH487900) Monosiga ovata DNA, fosmid clone: MOF-046A13, gen... 46 1.8 1
(DE978601) Macropus eugenii DNA, BAC clone: MEB1-186I01_F, 5... 46 1.8 1
(CW929988) EDCC002TF A. castellanii, 6-8 kb library from tot... 46 1.8 1
(AG252407) Lotus japonicus DNA, clone:LjT31o24_not. 46 1.8 1
(EC101676) ACE00000337 Biotinylated CAP Trapper method (Carn... 46 1.8 1
(EC100158) ACE00000336 Biotinylated CAP Trapper method (Carn... 46 1.8 1
(EB556963) AGENCOURT_51210985 D. virilis EST Drosophila viri... 46 1.8 1
(EB554301) AGENCOURT_51370462 D. virilis EST Drosophila viri... 46 1.8 1
(DY665123) SV_MF_11_D05 SV_MF Senecio vulgaris subsp. vulgar... 46 1.8 1
(DY657662) SV_CP_10_E12 SV_CP Senecio vulgaris subsp. vulgar... 46 1.8 1
(DT545051) EST1055691 GH_TMO Gossypium hirsutum cDNA, mRNA s... 46 1.8 1
(DR577359) WS00746.C21_A19 WS-PS-N-A-8 Picea glauca cDNA clo... 46 1.8 1
(CV086559) CS_gil_42D10_M13Reverse Blue crab gill, normalize... 46 1.8 1
(CD477232) eca01-7ms1-c04 Eca01 Eschscholzia californica cDN... 46 1.8 1
(CB963184) AGENCOURT_13443184 NIH_MGC_187 Homo sapiens cDNA ... 46 1.8 1
(BU005604) QGG8J13.yg.ab1 QG_EFGHJ lettuce serriola Lactuca ... 46 1.8 1
(H38244) yp58g07.s1 Soares fetal liver spleen 1NFLS Homo sap... 46 1.8 1
(EY306842) CAWX20140.fwd CAWX Helobdella robusta Primary Ear... 46 1.8 1
(EX438639) GQ04008.B7_H05 GQ040 - Shoot tip - Active growth ... 46 1.8 1
(EX426761) GQ03814.B7_D07 GQ038 - Stem - Active growth Picea... 46 1.8 1
(EX407763) GQ03519.B7_I17 GQ035 - Needles - End of season Pi... 46 1.8 1
(EX363622) GQ03207.B7_L15 GQ032 - Shoot tip (Normalized libr... 46 1.8 1
(EX362223) GQ03205.B7_N09 GQ032 - Shoot tip (Normalized libr... 46 1.8 1
(EX326935) GQ02826.B7_C09 GQ028 - Cambium / phloem scrapping... 46 1.8 1
(EX317135) GQ02811.B7_G13 GQ028 - Cambium / phloem scrapping... 46 1.8 1
(EX317035) GQ02811.B7_C08 GQ028 - Cambium / phloem scrapping... 46 1.8 1
(DX511975) 762_1_14169231_5489_43582_012 Arachis duranensis ... 40 2.6 2
(CQ583674) Sequence 11432 from Patent WO0171042. 36 2.6 3
(AU265876) Dictyostelium discoideum vegetative cDNA clone:VS... 36 2.6 2
(AC179606) Strongylocentrotus purpuratus clone R3-1028P05, W... 44 2.7 2
(AU263262) Dictyostelium discoideum vegetative cDNA clone:VS... 36 2.8 2
(AU262877) Dictyostelium discoideum vegetative cDNA clone:VS... 36 2.8 2
(CQ583542) Sequence 11300 from Patent WO0171042. 36 2.8 3
(EJ424202) 1093012251399 Global-Ocean-Sampling_GS-28-01-01-1... 42 3.0 2
(AU268985) Dictyostelium discoideum vegetative cDNA clone:VS... 36 3.2 2
(EY838930) PT11-C9-005-004-H11-CT.F Poncirus trifoliata seed... 36 3.2 2
(CQ583673) Sequence 11431 from Patent WO0171042. 36 3.2 3
(DH604781) Rattus norvegicus DNA, BAC clone: RNB1-131P23, 3'... 38 3.3 2
(C84737) Dictyostelium discoideum slug cDNA, clone SSF167. 36 3.3 2
(AL929443) Mouse DNA sequence from clone RP23-467A7 on chrom... 32 3.4 2
(AC178209) Strongylocentrotus purpuratus clone R3-1116H5, WO... 32 3.4 2
(L42512) Drosophila melanogaster shortsighted class 2 (shs) ... 36 3.4 3
(AC180799) Strongylocentrotus purpuratus clone R3-3024C22, W... 32 3.4 2
(AC176783) Strongylocentrotus purpuratus clone R3-3106E9, WO... 32 3.4 2
(AP004969) Lotus japonicus genomic DNA, chromosome 5, clone:... 32 3.5 2
(AC137874) Mus musculus clone RP23-58F21, WORKING DRAFT SEQU... 34 3.5 2
(AC111934) Rattus norvegicus clone CH230-156C15, WORKING DRA... 38 3.8 2
(DE910228) Macropus eugenii DNA, BAC clone: MEB1-093G15_F, 5... 42 4.3 2
(EY841947) PT11-C9-005-045-E09-CT.F Poncirus trifoliata seed... 36 4.3 2
(EY838880) PT11-C9-005-004-C11-CT.F Poncirus trifoliata seed... 36 4.5 2
(EY840689) PT11-C9-005-030-G05-CT.F Poncirus trifoliata seed... 36 4.6 2
(BG334113) 602460483F1 NIH_MGC_20 Homo sapiens cDNA clone IM... 36 4.7 2
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 44 4.7 3
(BF027540) 601672003F1 NIH_MGC_20 Homo sapiens cDNA clone IM... 36 4.9 2
(FK379190) 454GmaGlobSeed113822 Soybean Seeds Containing Glo... 34 5.2 2
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 44 5.3 3
(AC201329) Strongylocentrotus purpuratus clone R3-16M4, WORK... 42 6.0 2
(BX465197) Zebrafish DNA sequence from clone DKEY-184E24 in ... 44 7.0 1
(CT030195) Mouse DNA sequence from clone RP23-191J8 on chrom... 44 7.0 1
(AF187993) Dipodomys ingens microsatellite Di12E sequence. 44 7.0 1
(AC175380) Mus musculus BAC clone RP24-333L5 from chromosome... 44 7.0 1
(AC170188) Mus musculus BAC clone RP24-195M20 from chromosom... 44 7.0 1
(AC158529) Mus musculus BAC clone RP23-263H3 from chromosome... 44 7.0 1
(AC153845) Mus musculus 10 BAC RP23-158C15 (Roswell Park Can... 44 7.0 1
(AC141426) Mus musculus BAC clone RP23-280I14 from chromosom... 44 7.0 1
(AC139381) Mus musculus BAC clone RP23-171D1 from 13, comple... 44 7.0 1
(AC128668) Mus musculus BAC clone RP24-81D14 from chromosome... 44 7.0 1
(AC125536) Mus musculus BAC clone RP24-142N21 from chromosom... 44 7.0 1
(AC125358) Mus musculus BAC clone RP23-256E3 from 8, complet... 44 7.0 1
(AC124414) Mus musculus BAC clone RP24-282K24 from chromosom... 44 7.0 1
(AP009632) Lotus japonicus genomic DNA, chromosome 3, clone:... 44 7.0 1
(AP006494) Cyanidioschyzon merolae DNA, chromosome 12, compl... 44 7.0 1
(AM485160) Vitis vinifera contig VV78X192168.10, whole genom... 44 7.0 1
(AM482964) Vitis vinifera, whole genome shotgun sequence, co... 44 7.0 1
(AM470290) Vitis vinifera contig VV78X254047.2, whole genome... 44 7.0 1
(AM459886) Vitis vinifera contig VV78X011329.13, whole genom... 44 7.0 1
(AM452875) Vitis vinifera contig VV78X008298.7, whole genome... 44 7.0 1
(AM450299) Vitis vinifera contig VV78X273959.4, whole genome... 44 7.0 1
(AM447758) Vitis vinifera contig VV78X125618.10, whole genom... 44 7.0 1
(EA064023) Sequence 1848 from patent US 7171311. 44 7.0 1
(DL067762) Cancer Gene Determination and Therapeutic Screeni... 44 7.0 1
(DL067481) Cancer Gene Determination and Therapeutic Screeni... 44 7.0 1
(DL061117) Cancer Gene Determination and Therapeutic Screeni... 44 7.0 1
(DD416513) Diagnosis and Prognosis of Breast Cancer Patients. 44 7.0 1
(DD333827) A method of testing a sensitivity of tumor cells ... 44 7.0 1
(DD131262) Diagnosis and Prognosis of Breast Cancer Patients. 44 7.0 1
(CS353468) Sequence 1 from Patent WO2005098433. 44 7.0 1
(CS351311) Sequence 695 from Patent WO2006013561. 44 7.0 1
(CS040955) Sequence 1509 from Patent WO2005019258. 44 7.0 1
(CS032003) Sequence 1509 from Patent WO2005016962. 44 7.0 1
(AX336366) Sequence 6875 from Patent WO0194629. 44 7.0 1
(AX336085) Sequence 6594 from Patent WO0194629. 44 7.0 1
(AX329721) Sequence 230 from Patent WO0194629. 44 7.0 1
(AR274893) Sequence 30 from patent US 6506607. 44 7.0 1
(AM494966) Leishmania braziliensis chromosome 29. 44 7.0 1
(AE014850) Plasmodium falciparum 3D7 chromosome 12, section ... 44 7.0 1
(AC134175) Drosophila pseudoobscura FOSMID DPSF1-548A9 (Chi... 44 7.0 1
(U13616) Human ankyrin G (ANK-3) mRNA, complete cds. 44 7.0 1
(AL592430) Human DNA sequence from clone RP11-388P9 on chrom... 44 7.0 1
(AC090744) Homo sapiens chromosome 11, clone RP11-660K15, co... 44 7.0 1
(AC068329) Homo sapiens chromosome 11, clone RP11-82N10, com... 44 7.0 1
(AC012066) Homo sapiens BAC clone RP11-173H9 from 2, complet... 44 7.0 1
(AC159467) Mus musculus clone RP23-157L13, WORKING DRAFT SEQ... 44 7.0 1
(AC141736) Apis mellifera clone CH224-58F15, WORKING DRAFT S... 44 7.0 1
(AC129369) Rattus norvegicus clone CH230-126A1, *** SEQUENCI... 44 7.0 1
(AC129279) Rattus norvegicus clone CH230-8H7, WORKING DRAFT ... 44 7.0 1
(AC128273) Rattus norvegicus clone CH230-415N15, WORKING DRA... 44 7.0 1
(AC128254) Rattus norvegicus clone CH230-468D8, *** SEQUENCI... 44 7.0 1
(AC128247) Rattus norvegicus clone CH230-523D17, WORKING DRA... 44 7.0 1
(AC121176) Rattus norvegicus clone CH230-435M17, WORKING DRA... 44 7.0 1
(AC117153) Rattus norvegicus clone CH230-64A17, WORKING DRAF... 44 7.0 1
(AC116230) Rattus norvegicus clone CH230-211E16, *** SEQUENC... 44 7.0 1
(AC114367) Rattus norvegicus clone CH230-68A2, WORKING DRAFT... 44 7.0 1
(AC113755) Rattus norvegicus clone CH230-193C1, *** SEQUENCI... 44 7.0 1
(AC113658) Rattus norvegicus clone CH230-253I1, *** SEQUENCI... 44 7.0 1
(AC111465) Rattus norvegicus clone CH230-74L1, *** SEQUENCIN... 44 7.0 1
(AC111384) Rattus norvegicus clone CH230-138J5, WORKING DRAF... 44 7.0 1
(AC106501) Rattus norvegicus clone CH230-215G2, *** SEQUENCI... 44 7.0 1
(AC098119) Rattus norvegicus clone CH230-127L7, WORKING DRAF... 44 7.0 1
(AC096154) Rattus norvegicus clone CH230-10H24, WORKING DRAF... 44 7.0 1
(AC095303) Rattus norvegicus clone CH230-36O20, WORKING DRAF... 44 7.0 1
(CU896554) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.0 1
(AC094070) Rattus norvegicus clone CH230-108N20, *** SEQUENC... 44 7.0 1
(AC040893) Homo sapiens chromosome 6 clone RP11-722N5 map 6,... 44 7.0 1
(AP010033) Lotus japonicus genomic DNA, clone: LjT34K24, TM0... 44 7.0 1
(AP009949) Lotus japonicus genomic DNA, chromosome 6, clone:... 44 7.0 1
(AP007468) Lotus japonicus genomic DNA, chromosome 4, clone:... 44 7.0 1
(AP002781) Homo sapiens genomic DNA, chromosome 11q clone:RP... 44 7.0 1
(AC211053) Solanum lycopersicum chromosome 6 clone C06HBa014... 44 7.0 1
(AC207918) Triticum aestivum clone TAACSPALLhA_0865E14, *** ... 44 7.0 1
(AC196869) Macaca mulatta clone CH250-74K20, WORKING DRAFT S... 44 7.0 1
(AC193912) Pan troglodytes chromosome X clone CH251-693K7, W... 44 7.0 1
(AC192857) Pan troglodytes chromosome X clone CH251-324K14, ... 44 7.0 1
(AC186126) Felis catus clone RP86-87E6, WORKING DRAFT SEQUEN... 44 7.0 1
(AC184236) Strongylocentrotus purpuratus clone R3-3057P13, W... 44 7.0 1
(AC182283) Bos taurus clone CH240-501A7, WORKING DRAFT SEQUE... 44 7.0 1
(AC178742) Strongylocentrotus purpuratus clone R3-14A04, WOR... 44 7.0 1
(AC173092) Bos taurus clone CH240-310J18, WORKING DRAFT SEQU... 44 7.0 1
(AC172313) Strongylocentrotus purpuratus clone R3-14A4, WORK... 44 7.0 1
(AC171147) Muntiacus reevesi clone CH245-98B23, WORKING DRAF... 44 7.0 1
(AC170903) Mus musculus chromosome 13 clone RP23-295F19, WOR... 44 7.0 1
(AC170070) Loxodonta africana clone VMRC15-185K10, WORKING D... 44 7.0 1
(AC010159) Homo sapiens chromosome 10 clone RP11-326B1, WORK... 44 7.0 1
(AC005505) Plasmodium falciparum chromosome 12 clone PFYAC18... 44 7.0 1
(AC005140) Plasmodium falciparum chromosome 12 clone PFYACB8... 44 7.0 1
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI... 44 7.0 1
(AK272459) Gryllus bimaculatus mRNA, GBcontig19320. 44 7.0 1
(AQ463546) HS_5212_A1_A03_SP6E RPCI-11 Human Male BAC Librar... 44 7.0 1
(EK131800) 1093009953036 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.0 1
(EI347136) GM_WBc0093G14.f GM_WBc Glycine max genomic clone ... 44 7.0 1
(AL155932) Anopheles gambiae GSS T7 end of clone 30I03 of No... 44 7.0 1
(DQ038799) Homo sapiens ANK3 gene, VIRTUAL TRANSCRIPT, parti... 44 7.0 1
(CT505704) A BAC library has been constructed from cultivar ... 44 7.0 1
(EG695519) RCSBO73TP Castor bean cDNA library from seeds (12... 44 7.0 1
(EC994217) WIN115.C21_L07 Muscat Hamburg pre-veraison berry ... 44 7.0 1
(EC941927) WIN0524.C21_C11 Cab Sauv flower, leaf and root no... 44 7.0 1
(EC940430) WIN0519.C21_K14 Cab Sauv flower, leaf and root no... 44 7.0 1
(EC296829) OVARYF088532E21 POSSUM_01-POSSUM-C-OVARY-2KB Tric... 44 7.0 1
(AV768766) Lotus japonicus cDNA clone:MWL011g10_f, 3' end. 44 7.0 1
(EB935090) 11156514 ZF31XL Danio rerio cDNA clone 3549841, m... 44 7.0 1
(DY647376) PU3_plate30_K24 PU3 Prunus persica cDNA similar t... 44 7.0 1
(DV713468) CGN-62738 Cherry of Early Development Stage Coffe... 44 7.0 1
(DV710715) CGN-59311 Cherry of Early Development Stage Coffe... 44 7.0 1
(DV709292) CGN-57559 Cherry of Early Development Stage Coffe... 44 7.0 1
(DV689411) CGN-32465 Leaf Coffea canephora cDNA clone cccl23... 44 7.0 1
(DV673937) CGN-10235 Pericarp Coffea canephora cDNA clone cc... 44 7.0 1
(DT234612) JGI_CAAT8261.fwd CAAT Pimephales promelas brain 7... 44 7.0 1
(DT231739) JGI_CAAT5549.fwd CAAT Pimephales promelas brain 7... 44 7.0 1
(DR134672) 49434659 Drosophila pseudoobscura embryonic cDNA ... 44 7.0 1
(DR133482) 49292478 Drosophila pseudoobscura embryonic cDNA ... 44 7.0 1
(DN314964) PL06019B2A10 cDNA from juvenile hermaphodites Sch... 44 7.0 1
(DB899754) Populus nigra mRNA, clone: PnFL2-040_L23, 3'end. 44 7.0 1
(DB174719) Homo sapiens cDNA clone TKIDN2010694, 5' end, mRN... 44 7.0 1
(CV261184) WS02016.B21_B12 PTxN-IB-N-A-11 Populus trichocarp... 44 7.0 1
(CO047529) Lr_AT1CF_32G01_SKplus Earthworm Atrazine Exposure... 44 7.0 1
(CK258105) EST741742 potato callus cDNA library, normalized ... 44 7.0 1
(CK248772) EST732409 potato callus cDNA library, normalized ... 44 7.0 1
(CJ743910) Ipomoea nil cDNA clone:jmsf28g23, 5' end. 44 7.0 1
(AJ283363) Anopheles gambiae EST 4A3B-AAA-G-10-F. 44 7.0 1
(CF391733) RTDR3_11_A02.g1_A022 Loblolly pine roots recoveri... 44 7.0 1
(CF387372) RTDR1_12_E01.g1_A015 Loblolly pine roots recoveri... 44 7.0 1
(CF387344) RTDR1_12_E01.b1_A015 Loblolly pine roots recoveri... 44 7.0 1
(CF349806) fc2903.e Rose Petals (Fragrant Cloud) Lambda Zap ... 44 7.0 1
(CD596437) RK101A4A05.T3 Zebrafish Kidney Marrow cDNA librar... 44 7.0 1
(CD595818) RK098A4A05.T3 Zebrafish Kidney Marrow cDNA librar... 44 7.0 1
(BU039308) PP_LEa0001O07f Peach developing fruit mesocarp Pr... 44 7.0 1
(BQ851903) QGB16J17.yg.ab1 QG_ABCDI lettuce salinas Lactuca ... 44 7.0 1
(BP350320) Homo sapiens cDNA clone: SZR08794, Sugano cDNA li... 44 7.0 1
(BJ402722) Dictyostelium discoideum cDNA clone:dds17f19, 3' ... 44 7.0 1
(BJ399537) Dictyostelium discoideum cDNA clone:dds6m07, 3' e... 44 7.0 1
(BJ377030) Dictyostelium discoideum cDNA clone:ddc22g11, 3' ... 44 7.0 1
(BJ358725) Dictyostelium discoideum cDNA clone:ddc11h05, 5' ... 44 7.0 1
(BJ350021) Dictyostelium discoideum cDNA clone:dda38n07, 3' ... 44 7.0 1
(BJ344610) Dictyostelium discoideum cDNA clone:dda19l23, 3' ... 44 7.0 1
(FG085046) CMRC-FF-IH0-abz-c-10-0-CMRC.r1 Ceratitis capitata... 44 7.0 1
(FE774986) CCAG7996.g1 CCAG Petrolisthes cinctipes heart, gi... 44 7.0 1
(FE774985) CCAG7996.b3 CCAG Petrolisthes cinctipes heart, gi... 44 7.0 1
(FE445139) CAOS12096.rev CAOS Selaginella moellendorffii mix... 44 7.0 1
(FD901375) CBOX10416.rev CBOX Volvox carteri f. nagariensis ... 44 7.0 1
(FC861983) PPN052D01-T7 PPN Prunus persica cDNA clone PPN052... 44 7.0 1
(AW568155) si57b01.y1 Gm-r1030 Glycine max cDNA clone GENOME... 44 7.0 1
(EY450359) CBAZ4103.fwd CBAZ Tubifex tubifex Embryos and juv... 44 7.0 1
(EY449480) CBAZ3270.fwd CBAZ Tubifex tubifex Embryos and juv... 44 7.0 1
(EY448370) CBAZ2176.fwd CBAZ Tubifex tubifex Embryos and juv... 44 7.0 1
(EY317386) CAWX27540.rev CAWX Helobdella robusta Primary Ear... 44 7.0 1
(EX853427) CBNF10128.fwd CBNF Phycomyces blakesleeanus NRRL1... 44 7.0 1
(EX816489) CBNA5069.rev CBNA Phycomyces blakesleeanus NRRL15... 44 7.0 1
(ES881567) SME-475 subtracted libraries from gill of black-c... 44 7.0 1
(ES881271) SME-179 subtracted libraries from gill of black-c... 44 7.0 1
(AC180552) Strongylocentrotus purpuratus clone R3-3098C1, WO... 42 8.9 2
(AC184578) Strongylocentrotus purpuratus clone R3-3067D12, W... 42 9.8 2

>(AU284857) Dictyostelium discoideum gamete cDNA clone:FC-BN11,
single read.
Length = 706

Score = 159 bits (80), Expect(6) = e-133
Identities = 80/80 (100%)
Strand = Plus / Plus


Query: 551 agatgccaccgctccaactaccacaaccactaaagataatgtggatgaagcctcagtaga 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 agatgccaccgctccaactaccacaaccactaaagataatgtggatgaagcctcagtaga 610


Query: 611 aaagacagccaactcagccc 630
||||||||||||||||||||
Sbjct: 611 aaagacagccaactcagccc 630

Score = 153 bits (77), Expect(6) = e-133
Identities = 77/77 (100%)
Strand = Plus / Plus


Query: 259 gaaccgctgcaaatccaaccgataaaaaagatggtgaaaataaagatgtaactccatctg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gaaccgctgcaaatccaaccgataaaaaagatggtgaaaataaagatgtaactccatctg 318


Query: 319 atgataaaccagctgct 335
|||||||||||||||||
Sbjct: 319 atgataaaccagctgct 335

Score = 99.6 bits (50), Expect(6) = e-133
Identities = 50/50 (100%)
Strand = Plus / Plus


Query: 1 attcaactactaccactgccaccgccaccaccactactgatgattccact 50
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attcaactactaccactgccaccgccaccaccactactgatgattccact 50

Score = 77.8 bits (39), Expect(6) = e-133
Identities = 39/39 (100%)
Strand = Plus / Plus


Query: 127 atggtgatgatgatgaaactgctgctgctgccactgagg 165
|||||||||||||||||||||||||||||||||||||||
Sbjct: 127 atggtgatgatgatgaaactgctgctgctgccactgagg 165

Score = 71.9 bits (36), Expect(6) = e-133
Identities = 36/36 (100%)
Strand = Plus / Plus


Query: 451 accaatcatcatctgatgaatctgccaacaaagaga 486
||||||||||||||||||||||||||||||||||||
Sbjct: 451 accaatcatcatctgatgaatctgccaacaaagaga 486

Score = 42.1 bits (21), Expect(6) = e-133
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 354 gccgccgctgcaaccaccact 374
|||||||||||||||||||||
Sbjct: 354 gccgccgctgcaaccaccact 374

Score = 42.1 bits (21), Expect(2) = 0.25
Identities = 27/29 (93%)
Strand = Plus / Plus


Query: 551 agatgccaccgctccaactaccacaacca 579
||||||||||||||||| |||||| ||||
Sbjct: 518 agatgccaccgctccaaataccaccacca 546

Score = 30.2 bits (15), Expect(2) = 0.25
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 281 taaaaaagatggtga 295
|||||||||||||||
Sbjct: 119 taaaaaagatggtga 133

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 347,488,632
Number of extensions: 26685815
Number of successful extensions: 3737202
Number of sequences better than 10.0: 307
Length of query: 706
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 682
Effective length of database: 96,409,374,237
Effective search space: 65751193229634
Effective search space used: 65751193229634
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.16
Homology vs Protein
Query= Contig-U15425-1 (Contig-U15425-1Q) /CSM_Contig/Contig-U15425-1Q.Seq.d
(706 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 310,889,101
Number of extensions: 2694838
Number of successful extensions: 4092
Number of sequences better than 10.0: 0
Number of HSP's gapped: 4073
Number of HSP's successfully gapped: 0
Length of query: 235
Length of database: 1,051,180,864
Length adjustment: 125
Effective length of query: 110
Effective length of database: 646,610,989
Effective search space: 71127208790
Effective search space used: 71127208790
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.86 gvh: 0.18 alm: 0.61 top: 0.40 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.43 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

80.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: cytoplasmic
4.0 %: vesicles of secretory system

>> prediction for Contig-U15425-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 3
FC-IC (SUB) 0