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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15420-1
Contig ID Contig-U15420-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15420-1 (Contig-U15420-1Q) /CSM_Contig/Contig-U15420-1Q.Seq.d
ATATATATATATATTATGAATAACATTTATTTATTTGAATTTCCCAAATA
TTTAAGATAATTTTTTAGAATGTTCTAGAACATTCGAAGAATAAAAAAAT
TTTCGAAAGAAAAGTAAAAATTTCGAACCGGCACAATGACGCGATCATTG
TGTAAGGTCGAAAAACTGAAAGGTCTCATTATTACTACTGACTCAATCAA
AGGTCCCGTTATTAATGCTAAAGAACAAAGAAGTGGTATTGTTTCAATCT
TAGAATTAACATCGTTAGATGATACTAACTCTCAAGTGTGCCCTGTTCGC
CACCTTGCAACATACCTTAGAGCATCTAAAGGAAGAAGAAAGCCCCATTC
GGGTGACTCTGTCTTTATTAAGAATGAAGGTGAACCGCTCCAAGTTAATG
ATATTAATTCAATTGTACTATCAACACTCTCAAAGTCAGGTATTGATATT
GTCAAGTTCAAATCTCACTCTACCCGTTCCGCTATGGCTTCTCTGCTGTT
GTCCAATAACGTTCCGTTCCACGTTGTCAAAAAGATGGGTCGTTGGAAAT
CAAACGATACTGTAGATACCTTCTACGATAAAAGAATCATTGGTGAAAAA
TCTGGTGGTTTCTTAAATACTGTCGTCCAAATTTCATAATATATATATAT
ATATGATAATATAAATTAAAAATTTAATTTATTAAATTATATTTTATATT
AAATATATATATATATATTAGTCCCATCCCACCCGCCCTTAGTCGGAATT
CCATAAATCAAATTGTTTTAGTTTTTAGTGCCACTATTTATACGTTTTTA
TTTTCTTAAAAATTTAGCAAAACTCAAAAAAATAAGAGTTTTCGACCCTT
CACAACTTTGTGCATAGTGTCGGTTCGGAATTTTTCAGTTTTTCGACCTT
GCGCAATGATCGCGTCATTGTGCCGGTTCGAAATTTTTACTTTTCTTTCG
AAAATTTTTTATTCTTCGAATGTTCTAGAACATTCTAAAAAATTATCTTA
AATATTTGGGAAATTCAAATAAATAAATGTTATTCATAATATATATATAT
ATATTTAATATAAAAAAAAAAAAAAAA
Gap no gap
Contig length 1077
Chromosome number (1..6, M) 3F
Chromosome length 19366
Start point 1471
End point 1288
Strand (PLUS/MINUS) MINUS
Number of clones 7
Number of EST 7
Link to clone list U15420
List of clone(s) 

est1=FC-AE03F,1,596
est2=SLF219Z,187,677
est3=SLC181Z,195,571
est4=SLE632Z,195,570
est5=SLI627Z,199,740
est6=SLB473F,610,1010
est7=SLD833F,945,1077
Translated Amino Acid sequence 
iyiyimnniylfefpkylr*ffrmf*nirrikkfskek*KFRTGTMTRSLCKVEKLKGLI
ITTDSIKGPVINAKEQRSGIVSILELTSLDDTNSQVCPVRHLATYLRASKGRRKPHSGDS
VFIKNEGEPLQVNDINSIVLSTLSKSGIDIVKFKSHSTRSAMASLLLSNNVPFHVVKKMG
RWKSNDTVDTFYDKRIIGEKSGGFLNTVVQIS*yiyiydnin*kfnllnyily*iyiyil
vpshpplvgip*iklf*flvplfirfyflknlaklkkirvfdpsqlca*crfgifqffdl
aq*srhcagskfllffrkffilrmf*nilknylkylgnsnk*mlfiiyiyifnikkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
iyiyimnniylfefpkylr*ffrmf*nirrikkfskek*KFRTGTMTRSLCKVEKLKGLI
ITTDSIKGPVINAKEQRSGIVSILELTSLDDTNSQVCPVRHLATYLRASKGRRKPHSGDS
VFIKNEGEPLQVNDINSIVLSTLSKSGIDIVKFKSHSTRSAMASLLLSNNVPFHVVKKMG
RWKSNDTVDTFYDKRIIGEKSGGFLNTVVQIS*yiyiydnin*kfnllnyily*iyiyil
vpshpplvgip*iklf*flvplfirfyflknlaklkkirvfdpsqlca*crfgifqffdl
aq*srhcagskfllffrkffilrmf*nilknylkylgnsnk*mlfiiyiyifnikkkkk


Frame B:
yiyil*itfiylnfpni*dnflecsrtfee*knfrkksknfepaq*rdhcvrskn*kvsl
llltqskvpllmlknkevvlfqs*n*hr*miltlkcalfatlqhtlehlkeeespirvtl
sllrmkvnrsklmiliqlyyqhsqsqvlilsssnltlpvplwllcccpitfrstlskrwv
vgnqtil*ipstikeslvknlvvs*ilsskfhniyiymii*iknliy*iifyikyiyiy*
shptrp*sefhksncfsf*chylyvfiflki*qnskk*efstlhnfvhsvgseffsfstl
rndrvivpvrnfyfsfenflffecsrtf*kiilniweiqinkcys*yiyiyli*kkkk


Frame C:
iyiyye*hlfi*isqifkiif*nvlehsknkkiferkvkisnrhndaiiv*grktershy
yy*lnqrsry*c*rtkkwycfnlrinivr*y*lssvpcsppcnip*si*rkkkapfg*lc
ly*e*r*taps**y*fnctintlkvry*ycqvqislypfrygfsavvq*rsvprcqkdgs
leikrycryllr*knhw*kiwwflkycrpnfiiyiyi**yklki*fiklyfilniyiyis
pippalsrnsinqivlvfsatiytflfs*kfsktqknksfrpfttlcivsvrnfsvfrpc
amiaslcrfeiftflskifyssnvlehskkls*ifgkfk*invihniyiyi*ykkkkk
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15420-1 (Contig-U15420-1Q)
/CSM_Contig/Contig-U15420-1Q.Seq.d
         (1077 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15420-1 (Contig-U15420-1Q) /CSM_Contig/Conti...  1189  0.0
Contig-U16007-1 (Contig-U16007-1Q) /CSM_Contig/Conti...    36  0.11
Contig-U15729-1 (Contig-U15729-1Q) /CSM_Contig/Conti...    36  0.11
Contig-U15670-1 (Contig-U15670-1Q) /CSM_Contig/Conti...    36  0.11
Contig-U15514-1 (Contig-U15514-1Q) /CSM_Contig/Conti...    36  0.11
Contig-U13950-1 (Contig-U13950-1Q) /CSM_Contig/Conti...    36  0.11
Contig-U08746-1 (Contig-U08746-1Q) /CSM_Contig/Conti...    36  0.11
Contig-U14096-1 (Contig-U14096-1Q) /CSM_Contig/Conti...    34  0.43
Contig-U12523-1 (Contig-U12523-1Q) /CSM_Contig/Conti...    34  0.43
Contig-U11826-1 (Contig-U11826-1Q) /CSM_Contig/Conti...    34  0.43

>Contig-U15420-1 (Contig-U15420-1Q) /CSM_Contig/Contig-U15420-1Q.Seq.d
          Length = 1077

 Score = 1189 bits (600), Expect = 0.0
 Identities = 614/621 (98%)
 Strand = Plus / Plus

                                                                       
Query: 15  tatgaataacatttatttatttgaatttcccaaatatttaagataattttttagaatgtt 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15  tatgaataacatttatttatttgaatttcccaaatatttaagataattttttagaatgtt 74

                                                                       
Query: 75  ctagaacattcgaagaatnnnnnnnttttcgaaagaaaagtaaaaatttcgaaccggcac 134
           ||||||||||||||||||       |||||||||||||||||||||||||||||||||||
Sbjct: 75  ctagaacattcgaagaataaaaaaattttcgaaagaaaagtaaaaatttcgaaccggcac 134

                                                                       
Query: 135 aatgacgcgatcattgtgtaaggtcgaaaaactgaaaggtctcattattactactgactc 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 aatgacgcgatcattgtgtaaggtcgaaaaactgaaaggtctcattattactactgactc 194

                                                                       
Query: 195 aatcaaaggtcccgttattaatgctaaagaacaaagaagtggtattgtttcaatcttaga 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 aatcaaaggtcccgttattaatgctaaagaacaaagaagtggtattgtttcaatcttaga 254

                                                                       
Query: 255 attaacatcgttagatgatactaactctcaagtgtgccctgttcgccaccttgcaacata 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 attaacatcgttagatgatactaactctcaagtgtgccctgttcgccaccttgcaacata 314

                                                                       
Query: 315 ccttagagcatctaaaggaagaagaaagccccattcgggtgactctgtctttattaagaa 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ccttagagcatctaaaggaagaagaaagccccattcgggtgactctgtctttattaagaa 374

                                                                       
Query: 375 tgaaggtgaaccgctccaagttaatgatattaattcaattgtactatcaacactctcaaa 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tgaaggtgaaccgctccaagttaatgatattaattcaattgtactatcaacactctcaaa 434

                                                                       
Query: 435 gtcaggtattgatattgtcaagttcaaatctcactctacccgttccgctatggcttctct 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gtcaggtattgatattgtcaagttcaaatctcactctacccgttccgctatggcttctct 494

                                                                       
Query: 495 gctgttgtccaataacgttccgttccacgttgtcaaaaagatgggtcgttggaaatcaaa 554
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gctgttgtccaataacgttccgttccacgttgtcaaaaagatgggtcgttggaaatcaaa 554

                                                                       
Query: 555 cgatactgtagataccttctacgataaaagaatcattggtgaaaaatctggtggtttctt 614
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cgatactgtagataccttctacgataaaagaatcattggtgaaaaatctggtggtttctt 614

                                
Query: 615 aaatactgtcgtccaaatttc 635
           |||||||||||||||||||||
Sbjct: 615 aaatactgtcgtccaaatttc 635


 Score =  593 bits (299), Expect = e-169
 Identities = 313/320 (97%)
 Strand = Plus / Plus

                                                                        
Query: 719  tagtcccatcccacccgcccttagtcggaattccataaatcaaattgttttagtttttag 778
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719  tagtcccatcccacccgcccttagtcggaattccataaatcaaattgttttagtttttag 778

                                                                        
Query: 779  tgccactatttatacgtttttattttcttaaaaatttagcaaaactcnnnnnnntaagag 838
            |||||||||||||||||||||||||||||||||||||||||||||||       ||||||
Sbjct: 779  tgccactatttatacgtttttattttcttaaaaatttagcaaaactcaaaaaaataagag 838

                                                                        
Query: 839  ttttcgacccttcacaactttgtgcatagtgtcggttcggaatttttcagtttttcgacc 898
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839  ttttcgacccttcacaactttgtgcatagtgtcggttcggaatttttcagtttttcgacc 898

                                                                        
Query: 899  ttgcgcaatgatcgcgtcattgtgccggttcgaaatttttacttttctttcgaaaatttt 958
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899  ttgcgcaatgatcgcgtcattgtgccggttcgaaatttttacttttctttcgaaaatttt 958

                                                                        
Query: 959  ttattcttcgaatgttctagaacattctaaaaaattatcttaaatatttgggaaattcaa 1018
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959  ttattcttcgaatgttctagaacattctaaaaaattatcttaaatatttgggaaattcaa 1018

                                
Query: 1019 ataaataaatgttattcata 1038
            ||||||||||||||||||||
Sbjct: 1019 ataaataaatgttattcata 1038


 Score =  280 bits (141), Expect = 4e-75
 Identities = 154/157 (98%), Gaps = 1/157 (0%)
 Strand = Plus / Minus

                                                                        
Query: 883  tttcagtttttcgaccttgcgcaatgatcgcgtcattgtgccggttcgaaatttttactt 942
            |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 171  tttcagtttttcgaccttacacaatgatcgcgtcattgtgccggttcgaaatttttactt 112

                                                                        
Query: 943  ttctttcgaaaatttttt-attcttcgaatgttctagaacattctaaaaaattatcttaa 1001
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 111  ttctttcgaaaatttttttattcttcgaatgttctagaacattctaaaaaattatcttaa 52

                                                 
Query: 1002 atatttgggaaattcaaataaataaatgttattcata 1038
            |||||||||||||||||||||||||||||||||||||
Sbjct: 51   atatttgggaaattcaaataaataaatgttattcata 15


 Score =  244 bits (123), Expect = 2e-64
 Identities = 148/157 (94%), Gaps = 1/157 (0%)
 Strand = Plus / Minus

                                                                        
Query: 15   tatgaataacatttatttatttgaatttcccaaatatttaagataattttttagaatgtt 74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1038 tatgaataacatttatttatttgaatttcccaaatatttaagataattttttagaatgtt 979

                                                                        
Query: 75   ctagaacattcgaagaatnnnnnnnttttcgaaagaaaagtaaaaatttcgaaccggcac 134
            ||||||||||||||||||       |||||||||||||||||||||||||||||||||||
Sbjct: 978  ctagaacattcgaagaat-aaaaaattttcgaaagaaaagtaaaaatttcgaaccggcac 920

                                                 
Query: 135  aatgacgcgatcattgtgtaaggtcgaaaaactgaaa 171
            |||||||||||||||| | ||||||||||||||||||
Sbjct: 919  aatgacgcgatcattgcgcaaggtcgaaaaactgaaa 883


 Score = 36.2 bits (18), Expect = 0.11
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 68  gaatgttctagaacattc 85
           ||||||||||||||||||
Sbjct: 968 gaatgttctagaacattc 985


 Score = 36.2 bits (18), Expect = 0.11
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 968 gaatgttctagaacattc 985
           ||||||||||||||||||
Sbjct: 68  gaatgttctagaacattc 85


 Score = 36.2 bits (18), Expect = 0.11
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                            
Query: 68 gaatgttctagaacattc 85
          ||||||||||||||||||
Sbjct: 85 gaatgttctagaacattc 68


 Score = 36.2 bits (18), Expect = 0.11
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 968 gaatgttctagaacattc 985
           ||||||||||||||||||
Sbjct: 985 gaatgttctagaacattc 968


>Contig-U16007-1 (Contig-U16007-1Q) /CSM_Contig/Contig-U16007-1Q.Seq.d
          Length = 1322

 Score = 36.2 bits (18), Expect = 0.11
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 1017 aaataaataaatgttatt 1034
            ||||||||||||||||||
Sbjct: 245  aaataaataaatgttatt 228


 Score = 36.2 bits (18), Expect = 0.11
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 19  aataacatttatttattt 36
           ||||||||||||||||||
Sbjct: 228 aataacatttatttattt 245


>Contig-U15729-1 (Contig-U15729-1Q) /CSM_Contig/Contig-U15729-1Q.Seq.d
          Length = 3894

 Score = 36.2 bits (18), Expect = 0.11
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 795  tttttattttcttaaaaa 812
            ||||||||||||||||||
Sbjct: 3678 tttttattttcttaaaaa 3661


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,904
Number of Sequences: 8402
Number of extensions: 22904
Number of successful extensions: 1894
Number of sequences better than 10.0: 110
length of query: 1077
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1061
effective length of database: 7,941,110
effective search space: 8425517710
effective search space used: 8425517710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.25
Homology vs DNA 
Query= Contig-U15420-1 (Contig-U15420-1Q) /CSM_Contig/Contig-U15420-1Q.Seq.d
         (1077 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC115680) Dictyostelium discoideum chromosome 2 map 4915084...   918   0.0    5
(AF298624) Dictyostelium discoideum chromosome 2 repeat region.   799   0.0    4
(M11340) Slime mold (D.discoideum) transposon DIRS-1, clone ...   422   0.0    7
(M11339) Slime mold (D.discoideum) transposon DIRS-1, comple...   414   0.0    11
(C23746) Dictyostelium discoideum gamete cDNA, clone FC-AE03.     846   0.0    2
(AU060783) Dictyostelium discoideum slug cDNA, clone SLB473.      757   0.0    1
(AU053426) Dictyostelium discoideum slug cDNA, clone SLI627.      303   0.0    3
(AU052858) Dictyostelium discoideum slug cDNA, clone SLF219.      295   e-147  3
(K01222) Slime mold (D.discoideum) transposable element Tdd-...   287   e-134  4
(AU034468) Dictyostelium discoideum slug cDNA, clone SLC181.      295   e-132  2
(AU034879) Dictyostelium discoideum slug cDNA, clone SLE632.      280   e-127  2
(K01221) Slime mold (D.discoideum) transposable element Tdd-...   194   e-104  3
(K03066) Slime mold (D.discoideum) mRNA complementary to two...   287   2e-96  3
(K03070) Slime mold (D.discoideum) DIRS-1 right inverted ter...   141   3e-96  4
(K03072) Slime mold (D.discoideum) DIRS-1 right inverted ter...   141   1e-88  3
(K03068) Slime mold (D.discoideum) DIRS-1 right inverted ter...   133   7e-87  5
(K03069) Slime mold (D.discoideum) DIRS-1 left inverted term...   117   3e-82  5
(K03067) Slime mold (D.discoideum) DIRS-1 left inverted term...    96   7e-79  6
(K03073) Slime mold (D.discoideum) mRNA complementary to the...   184   6e-73  2
(K03071) Slime mold (D.discoideum) DIRS-1 left inverted term...   141   2e-70  4
(AU061357) Dictyostelium discoideum slug cDNA, clone SLD833.      256   2e-63  1
(BJ356021) Dictyostelium discoideum cDNA clone:dda59a06, 3' ...   234   3e-62  2
(K01966) Slime mold (D.discoideum) heat-shock promoter in DI...    64   1e-05  1
(K03064) Slime mold (D.discoideum) mRNA complementary to rig...    62   5e-05  1
(FH896857) CHO_ONF048xk10f1.ab1 CHO_ONF Nicotiana tabacum ge...    42   0.015  3
(EG626938) EMBRYOF088217D19 POSSUM_01-POSSUM-C-EMBRYO-2KB Tr...    36   0.13   2
(AC174767) Gasterosteus aculeatus chromosome VMRC28-49C03, c...    42   0.37   2
(AC150787) Medicago truncatula clone mth2-171n13, complete s...    48   0.69   1
(AC205828) Zea mays chromosome 10 clone CH201-412E7; ZMMBBc0...    48   0.69   1
(ER868050) PPTEC21TF Solanum tuberosum RHPOTKEY BAC ends Sol...    48   0.69   1
(CL986152) ZMMBHe0002g01.f ZMMBHe Zea mays genomic clone ZMM...    48   0.69   1
(CG884036) ZMMBBb0494E24r ZMMBBb (HindIII) Zea mays subsp. m...    48   0.69   1
(DW807199) MSAM210558_1063_1632 LCM-dissected maize shoot ap...    48   0.69   1
(AE016823) Leptospira interrogans serovar Copenhageni str. F...    48   0.69   1
(AE010300) Leptospira interrogans serovar lai str. 56601 chr...    48   0.69   1
(AM477968) Vitis vinifera contig VV78X236872.6, whole genome...    36   1.6    2
(EU115441) Dictyostelium discoideum Ddi2122 RNA, complete se...    46   2.7    1
(AL158135) Human DNA sequence from clone RP1-304H12 on chrom...    46   2.7    1
(CU929539) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.7    1
(AC226465) Tupaia belangeri clone CH275-116O20, WORKING DRAF...    46   2.7    1
(AM483130) Vitis vinifera contig VV78X176419.8, whole genome...    40   3.9    2
(AM432345) Vitis vinifera contig VV78X071289.3, whole genome...    40   4.5    2
(AF303045) Helicoverpa armigera nuclear polyhedrosis virus, ...    38   4.8    2
(AF271059) Heliocoverpa armigera nucleopolyhedrovirus G4, co...    38   4.8    2
(EI059056) hgu0004ah12.g1 hgu Oryza glaberrima genomic clone...    42   4.9    2
(CB451270) 706026 MARC 6BOV Bos taurus cDNA 3', mRNA sequence.     42   6.8    2
(CB450734) 705418 MARC 6BOV Bos taurus cDNA 5', mRNA sequence.     42   6.9    2
(DE236970) Trifolium pratense DNA, clone:RCG32695.                 40   7.1    2
(FK118733) XABT161079.b1 Gateway compatible cien cDNA librar...    36   7.9    2
(AM476679) Vitis vinifera contig VV78X097503.10, whole genom...    40   7.9    2
(DT822746) LB00225.CR_F06 GC_BGC-02 Bos taurus cDNA clone IM...    42   8.8    2
(DT822453) LB00223.CR_O08 GC_BGC-02 Bos taurus cDNA clone IM...    42   8.8    2

>(AC115680) Dictyostelium discoideum chromosome 2 map 4915084-5005461
             strain AX4, complete sequence.
          Length = 90373

 Score =  918 bits (463), Expect(5) = 0.0
 Identities = 466/467 (99%)
 Strand = Plus / Plus


Query: 169   aaaggtctcattattactactgactcaatcaaaggtcccgttattaatgctaaagaacaa 228
             |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 74868 aaaggtctcattattactcctgactcaatcaaaggtcccgttattaatgctaaagaacaa 74927


Query: 229   agaagtggtattgtttcaatcttagaattaacatcgttagatgatactaactctcaagtg 288
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74928 agaagtggtattgtttcaatcttagaattaacatcgttagatgatactaactctcaagtg 74987


Query: 289   tgccctgttcgccaccttgcaacataccttagagcatctaaaggaagaagaaagccccat 348
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74988 tgccctgttcgccaccttgcaacataccttagagcatctaaaggaagaagaaagccccat 75047


Query: 349   tcgggtgactctgtctttattaagaatgaaggtgaaccgctccaagttaatgatattaat 408
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75048 tcgggtgactctgtctttattaagaatgaaggtgaaccgctccaagttaatgatattaat 75107


Query: 409   tcaattgtactatcaacactctcaaagtcaggtattgatattgtcaagttcaaatctcac 468
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75108 tcaattgtactatcaacactctcaaagtcaggtattgatattgtcaagttcaaatctcac 75167


Query: 469   tctacccgttccgctatggcttctctgctgttgtccaataacgttccgttccacgttgtc 528
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75168 tctacccgttccgctatggcttctctgctgttgtccaataacgttccgttccacgttgtc 75227


Query: 529   aaaaagatgggtcgttggaaatcaaacgatactgtagataccttctacgataaaagaatc 588
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75228 aaaaagatgggtcgttggaaatcaaacgatactgtagataccttctacgataaaagaatc 75287


Query: 589   attggtgaaaaatctggtggtttcttaaatactgtcgtccaaatttc 635
             |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75288 attggtgaaaaatctggtggtttcttaaatactgtcgtccaaatttc 75334

 Score =  303 bits (153), Expect(5) = 0.0
 Identities = 153/153 (100%)
 Strand = Plus / Plus


Query: 833   taagagttttcgacccttcacaactttgtgcatagtgtcggttcggaatttttcagtttt 892
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75532 taagagttttcgacccttcacaactttgtgcatagtgtcggttcggaatttttcagtttt 75591


Query: 893   tcgaccttgcgcaatgatcgcgtcattgtgccggttcgaaatttttacttttctttcgaa 952
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75592 tcgaccttgcgcaatgatcgcgtcattgtgccggttcgaaatttttacttttctttcgaa 75651


Query: 953   aattttttattcttcgaatgttctagaacattc 985
             |||||||||||||||||||||||||||||||||
Sbjct: 75652 aattttttattcttcgaatgttctagaacattc 75684

 Score =  208 bits (105), Expect(5) = 0.0
 Identities = 105/105 (100%)
 Strand = Plus / Plus


Query: 721   gtcccatcccacccgcccttagtcggaattccataaatcaaattgttttagtttttagtg 780
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75420 gtcccatcccacccgcccttagtcggaattccataaatcaaattgttttagtttttagtg 75479


Query: 781   ccactatttatacgtttttattttcttaaaaatttagcaaaactc 825
             |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75480 ccactatttatacgtttttattttcttaaaaatttagcaaaactc 75524

 Score =  127 bits (64), Expect(5) = 0.0
 Identities = 70/72 (97%)
 Strand = Plus / Plus


Query: 100   ttttcgaaagaaaagtaaaaatttcgaaccggcacaatgacgcgatcattgtgtaaggtc 159
             ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 71080 ttttcgaaagaaaagtaaaaatttcgaaccggcacaatgacgcgatcattgcgcaaggtc 71139


Query: 160   gaaaaactgaaa 171
             ||||||||||||
Sbjct: 71140 gaaaaactgaaa 71151

 Score = 50.1 bits (25), Expect(5) = 0.0
 Identities = 25/25 (100%)
 Strand = Plus / Plus


Query: 68    gaatgttctagaacattcgaagaat 92
             |||||||||||||||||||||||||
Sbjct: 71049 gaatgttctagaacattcgaagaat 71073

 Score =  303 bits (153), Expect(4) = e-145
 Identities = 153/153 (100%)
 Strand = Plus / Minus


Query: 833   taagagttttcgacccttcacaactttgtgcatagtgtcggttcggaatttttcagtttt 892
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71201 taagagttttcgacccttcacaactttgtgcatagtgtcggttcggaatttttcagtttt 71142


Query: 893   tcgaccttgcgcaatgatcgcgtcattgtgccggttcgaaatttttacttttctttcgaa 952
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71141 tcgaccttgcgcaatgatcgcgtcattgtgccggttcgaaatttttacttttctttcgaa 71082


Query: 953   aattttttattcttcgaatgttctagaacattc 985
             |||||||||||||||||||||||||||||||||
Sbjct: 71081 aattttttattcttcgaatgttctagaacattc 71049

 Score =  145 bits (73), Expect(4) = e-145
 Identities = 73/73 (100%)
 Strand = Plus / Minus


Query: 753   ataaatcaaattgttttagtttttagtgccactatttatacgtttttattttcttaaaaa 812
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71281 ataaatcaaattgttttagtttttagtgccactatttatacgtttttattttcttaaaaa 71222


Query: 813   tttagcaaaactc 825
             |||||||||||||
Sbjct: 71221 tttagcaaaactc 71209

 Score =  127 bits (64), Expect(4) = e-145
 Identities = 70/72 (97%)
 Strand = Plus / Minus


Query: 100   ttttcgaaagaaaagtaaaaatttcgaaccggcacaatgacgcgatcattgtgtaaggtc 159
             ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 75653 ttttcgaaagaaaagtaaaaatttcgaaccggcacaatgacgcgatcattgcgcaaggtc 75594


Query: 160   gaaaaactgaaa 171
             ||||||||||||
Sbjct: 75593 gaaaaactgaaa 75582

 Score = 50.1 bits (25), Expect(4) = e-145
 Identities = 25/25 (100%)
 Strand = Plus / Minus


Query: 68    gaatgttctagaacattcgaagaat 92
             |||||||||||||||||||||||||
Sbjct: 75684 gaatgttctagaacattcgaagaat 75660

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 897,581,288
Number of extensions: 51859798
Number of successful extensions: 4331403
Number of sequences better than 10.0: 52
Length of query: 1077
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1053
Effective length of database: 96,409,374,237
Effective search space: 101519071071561
Effective search space used: 101519071071561
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.16
Homology vs Protein 
Query= Contig-U15420-1 (Contig-U15420-1Q) /CSM_Contig/Contig-U15420-1Q.Seq.d
         (1077 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B24785(B24785)hypothetical protein 1028 - slime mold (Dictyostel...   274   3e-72
EF710659_7(EF710659|pid:none) Glyptapanteles indiensis clone BAC...    55   6e-06
CP000516_66(CP000516|pid:none) Marinobacter aquaeolei VT8 plasmi...    42   0.028
AY531876_2(AY531876|pid:none) Tribolium castaneum retrotransposo...    42   0.037
CP000027_854(CP000027|pid:none) Dehalococcoides ethenogenes 195,...    42   0.049
CP000820_4072(CP000820|pid:none) Frankia sp. EAN1pec, complete g...    40   0.11
AF442732_2(AF442732|pid:none) Tetraodon nigroviridis TnDirs1 ret...    39   0.24
U66917_104(U66917|pid:none) Pseudomonas sp. ADP atrazine catabol...    39   0.31
AM502246_140(AM502246|pid:none) Leishmania infantum chromosome 28.     38   0.53
CP000470_176(CP000470|pid:none) Shewanella sp. ANA-3 plasmid 1, ...    38   0.54
CP001277_1478(CP001277|pid:none) Candidatus Hamiltonella defensa...    37   0.92
AF157835_38(AF157835|pid:none) Acyrthosiphon pisum bacteriophage...    37   0.92
EU794063_1(EU794063|pid:none) Candidatus Hamiltonella defensa st...    37   0.92
EU794066_1(EU794066|pid:none) Candidatus Hamiltonella defensa st...    37   0.92
EU794064_1(EU794064|pid:none) Candidatus Hamiltonella defensa pu...    37   0.92
AB102868_4(AB102868|pid:none) Enterobacteria phage ST104 DNA, co...    37   1.2
CU651637_489(CU651637|pid:none) Escherichia coli LF82 chromosome...    37   1.2
DQ003260_4(DQ003260|pid:none) Salmonella phage SE1, complete gen...    37   1.2
CP000036_230(CP000036|pid:none) Shigella boydii Sb227, complete ...    37   1.2
AE014073_292(AE014073|pid:none) Shigella flexneri 2a str. 2457T,...    37   1.2
CP000247_585(CP000247|pid:none) Escherichia coli 536, complete g...    37   1.2
AE005674_294(AE005674|pid:none) Shigella flexneri 2a str. 301, c...    37   1.2
CP001164_263(CP001164|pid:none) Escherichia coli O157:H7 str. EC...    37   1.2
CP001614_1977(CP001614|pid:none) Teredinibacter turnerae T7901, ...    37   1.2
CT573213_3636(CT573213|pid:none) Frankia alni str. ACN14A chromo...    37   1.2
CP001277_537(CP001277|pid:none) Candidatus Hamiltonella defensa ...    37   1.6
CP000829_1431(CP000829|pid:none) Streptococcus pyogenes NZ131, c...    36   2.0
FP236842_2547(FP236842|pid:none) Erwinia pyrifoliae strain Ep1/9...    36   2.7
(P04890) RecName: Full=Integrase;  &AB362338_23(AB362338|pid:non...    36   2.7
AE017220_324(AE017220|pid:none) Salmonella enterica subsp. enter...    36   2.7
CP000783_3027(CP000783|pid:none) Enterobacter sakazakii ATCC BAA...    36   2.7
CP000653_990(CP000653|pid:none) Enterobacter sp. 638, complete g...    36   2.7
CU928161_506(CU928161|pid:none) Escherichia coli S88 chromosome,...    35   3.5
(Q9CI63) RecName: Full=Prophage ps2 probable integrase; AltName:...    35   3.5
(P24218) RecName: Full=Prophage DLP12 integrase; AltName: Full=P...    35   3.5
CU928163_566(CU928163|pid:none) Escherichia coli UMN026 chromoso...    35   3.5
CP000096_1839(CP000096|pid:none) Pelodictyon luteolum DSM 273, c...    35   4.5
CP000249_2277(CP000249|pid:none) Frankia sp. CcI3, complete geno...    35   4.5
CP000688_836(CP000688|pid:none) Dehalococcoides sp. BAV1, comple...    35   4.5
CP000249_1128(CP000249|pid:none) Frankia sp. CcI3, complete geno...    35   4.5
AY531391_10(AY531391|pid:none) Schizaphis graminum mitochondrion...    35   5.9
CU928158_2579(CU928158|pid:none) Escherichia fergusonii ATCC 354...    35   5.9
CP000233_716(CP000233|pid:none) Lactobacillus salivarius UCC118,...    35   5.9
EU570103_23(EU570103|pid:none) Salmonella phage epsilon34, compl...    35   5.9
CP001103_2927(CP001103|pid:none) Alteromonas macleodii 'Deep eco...    35   5.9
CP000557_1603(CP000557|pid:none) Geobacillus thermodenitrificans...    34   7.8
BA000043_1730(BA000043|pid:none) Geobacillus kaustophilus HTA426...    34   7.8
AE015928_2741(AE015928|pid:none) Bacteroides thetaiotaomicron VP...    34   7.8
CP001638_1484(CP001638|pid:none) Geobacillus sp. WCH70, complete...    34   7.8

>B24785(B24785)hypothetical protein 1028 - slime mold (Dictyostelium
            discoideum) transposon DIRS-1 (fragment)
          Length = 1028

 Score =  274 bits (701), Expect = 3e-72
 Identities = 140/154 (90%), Positives = 145/154 (94%)
 Frame = +1

Query: 169  KGLIITTDSIKGPVINAKEQRSGIVSILELTSLDDTNSQVCPVRHLATYLRASKGRRKPH 348
            KGLIIT DSIKGPVINAKEQRSG+VSILELTSLDDTNSQVCPVRHLATYLRASKGRRKPH
Sbjct: 873  KGLIITPDSIKGPVINAKEQRSGVVSILELTSLDDTNSQVCPVRHLATYLRASKGRRKPH 932

Query: 349  SGDSVFIKNEGEPLQVNDINSIVLSTLSKSGIDIVKFKSHSTRSAMASLLLSNNVPFHVV 528
            SGDSVFIKNE    ++  +  IVLSTLSKSGIDIVKFKSHSTRSAMASLL+SNNVPFHVV
Sbjct: 933  SGDSVFIKNEVNRSKLMILTQIVLSTLSKSGIDIVKFKSHSTRSAMASLLVSNNVPFHVV 992

Query: 529  KKMGRWKSNDTVDTFYDKRIIGEKSGGFLNTVVQ 630
            KKMGRWKSNDTVDTFYDKRIIGEKSGGFLNTVVQ
Sbjct: 993  KKMGRWKSNDTVDTFYDKRIIGEKSGGFLNTVVQ 1026

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,486,123,056
Number of extensions: 26254925
Number of successful extensions: 60841
Number of sequences better than 10.0: 49
Number of HSP's gapped: 60794
Number of HSP's successfully gapped: 49
Length of query: 359
Length of database: 1,051,180,864
Length adjustment: 130
Effective length of query: 229
Effective length of database: 630,428,194
Effective search space: 144368056426
Effective search space used: 144368056426
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.60  gvh: 0.63  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.03
 nuc: 0.03  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for Contig-U15420-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 6
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0