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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15414-1
Contig ID Contig-U15414-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15414-1 (Contig-U15414-1Q) /CSM_Contig/Contig-U15414-1Q.Seq.d
ATTTTTAAATACAATAATTCAAAAGTTTGCAATTGATATTTGTCCAAATT
ATTACAATTGATTTGATACCAGTGATTTCTCAATCACTTGGTAGTATTTT
CAAAGATTATATGAGTTATTTAAAAAATGAAATTCAAAAAGAATATTTAT
CAGATACTCAATGTTTGGCGATCATTAGTGATTCAGTTTATATTGTCGAT
GATTTAGTATCAAGAATTGCAACTAGATTCGAAGATGCAACAGGTGAGAA
ATTAAATAACCTAACTCAGTTATCGTCATTGTTGTATAGTTATTTCGAGT
CAATTAGAGACCAATATTCAACTAGAAAAGCATTGGAATTGGTGGATAAT
AGTATGAATTGGGAAGAACAAGAATATCAAGTCGAGGAAGAGTTGGACCC
ATTTCCAAAGAATTTTATTGTTTTATCAGAAGCTTTGGATAGATTGGCTG
AATCAATTCAAACCAATGTCAATGTTGAAAGTGTTTTACCAATTGCCTCT
AGAATCATCTCTGAAATCGTTAATATCATTTCAAATAGATTCGAATCTAC
TTCAAATTTGGTTTTCGGTTATGGTGGTTTACAACATTTCATATTGGAAA
TGAAATATTTAGCAACTTTTGCTGGTAAATATCCTGTTGAAGATTCAACT
TTTGAATTAATTAATACAATGATTAGAAATCATAAAGAAATTTATTTAAA
TAATACTTCTGATCCAAAACCTTTAAAAACTGAAGAATATTTTACTTCAA
TCATTGATAATTTAGTTTATCAAAAAGCAGTTTATAATTAAAATAAAATA
AAATAAAATAAAAAATAAAATAATACTTTAACAAA
Gap no gap
Contig length 835
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 2788621
End point 2787787
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U15414
List of clone(s) 

est1=SHJ606Z,1,835
Translated Amino Acid sequence 
f*iq*FKSLQLIFVQIITIDLIPVISQSLGSIFKDYMSYLKNEIQKEYLSDTQCLAIISD
SVYIVDDLVSRIATRFEDATGEKLNNLTQLSSLLYSYFESIRDQYSTRKALELVDNSMNW
EEQEYQVEEELDPFPKNFIVLSEALDRLAESIQTNVNVESVLPIASRIISEIVNIISNRF
ESTSNLVFGYGGLQHFILEMKYLATFAGKYPVEDSTFELINTMIRNHKEIYLNNTSDPKP
LKTEEYFTSIIDNLVYQKAVYN*nkik*nkk*nntlt
Translated Amino Acid sequence (All Frames) 
Frame A:
ifkynnskvcn*ylskllqli*yq*flnhlvvfskii*vi*kmkfkkniyqilnvwrslv
iqfilsmi*yqelqldskmqqvrn*it*lsyrhccivissqletniqlekhwnwwiiv*i
gknkniksrkswthfqrillfyqklwidwlnqfkpmsmlkvfyqlplesslkslisfqid
snllqiwfsvmvvynisywk*ni*qlllvnillkiqlln*liq*leiikkfi*iilliqn
l*klknillqslii*fikkqfiikik*nkiknkiil*q


Frame B:
flntiiqkfaidicpnyyn*fdtsdfsitw*yfqrlyelfkk*nskrifirysmfgdh**
fslycr*fsikncn*irrcnr*eik*pnsvivivv*lfrvn*rpifn*ksigigg**yel
grtrissrgrvgpiskefycfirsfg*ig*insnqcqc*kcftncl*nhl*nr*yhfk*i
riyfkfgfrlwwfttfhigneifsnfcw*isc*rfnf*in*ynd*ks*rnlfk*yf*skt
fkn*rifyfnh**fslskssl*lk*nkik*kik*yfnk


Frame C:
f*iq*FKSLQLIFVQIITIDLIPVISQSLGSIFKDYMSYLKNEIQKEYLSDTQCLAIISD
SVYIVDDLVSRIATRFEDATGEKLNNLTQLSSLLYSYFESIRDQYSTRKALELVDNSMNW
EEQEYQVEEELDPFPKNFIVLSEALDRLAESIQTNVNVESVLPIASRIISEIVNIISNRF
ESTSNLVFGYGGLQHFILEMKYLATFAGKYPVEDSTFELINTMIRNHKEIYLNNTSDPKP
LKTEEYFTSIIDNLVYQKAVYN*nkik*nkk*nntlt
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15414-1 (Contig-U15414-1Q)
/CSM_Contig/Contig-U15414-1Q.Seq.d
         (835 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15414-1 (Contig-U15414-1Q) /CSM_Contig/Conti...  1562  0.0
Contig-U15324-1 (Contig-U15324-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U14691-1 (Contig-U14691-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U09907-1 (Contig-U09907-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U05142-1 (Contig-U05142-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U16177-1 (Contig-U16177-1Q) /CSM_Contig/Conti...    36  0.084
Contig-U11735-1 (Contig-U11735-1Q) /CSM_Contig/Conti...    36  0.084
Contig-U11325-1 (Contig-U11325-1Q) /CSM_Contig/Conti...    36  0.084
Contig-U11177-1 (Contig-U11177-1Q) /CSM_Contig/Conti...    36  0.084
Contig-U16437-1 (Contig-U16437-1Q) /CSM_Contig/Conti...    34  0.33

>Contig-U15414-1 (Contig-U15414-1Q) /CSM_Contig/Contig-U15414-1Q.Seq.d
          Length = 835

 Score = 1562 bits (788), Expect = 0.0
 Identities = 788/788 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttttaaatacaataattcaaaagtttgcaattgatatttgtccaaattattacaattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atttttaaatacaataattcaaaagtttgcaattgatatttgtccaaattattacaattg 60

                                                                       
Query: 61  atttgataccagtgatttctcaatcacttggtagtattttcaaagattatatgagttatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atttgataccagtgatttctcaatcacttggtagtattttcaaagattatatgagttatt 120

                                                                       
Query: 121 taaaaaatgaaattcaaaaagaatatttatcagatactcaatgtttggcgatcattagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taaaaaatgaaattcaaaaagaatatttatcagatactcaatgtttggcgatcattagtg 180

                                                                       
Query: 181 attcagtttatattgtcgatgatttagtatcaagaattgcaactagattcgaagatgcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attcagtttatattgtcgatgatttagtatcaagaattgcaactagattcgaagatgcaa 240

                                                                       
Query: 241 caggtgagaaattaaataacctaactcagttatcgtcattgttgtatagttatttcgagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caggtgagaaattaaataacctaactcagttatcgtcattgttgtatagttatttcgagt 300

                                                                       
Query: 301 caattagagaccaatattcaactagaaaagcattggaattggtggataatagtatgaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caattagagaccaatattcaactagaaaagcattggaattggtggataatagtatgaatt 360

                                                                       
Query: 361 gggaagaacaagaatatcaagtcgaggaagagttggacccatttccaaagaattttattg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gggaagaacaagaatatcaagtcgaggaagagttggacccatttccaaagaattttattg 420

                                                                       
Query: 421 ttttatcagaagctttggatagattggctgaatcaattcaaaccaatgtcaatgttgaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttttatcagaagctttggatagattggctgaatcaattcaaaccaatgtcaatgttgaaa 480

                                                                       
Query: 481 gtgttttaccaattgcctctagaatcatctctgaaatcgttaatatcatttcaaatagat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gtgttttaccaattgcctctagaatcatctctgaaatcgttaatatcatttcaaatagat 540

                                                                       
Query: 541 tcgaatctacttcaaatttggttttcggttatggtggtttacaacatttcatattggaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tcgaatctacttcaaatttggttttcggttatggtggtttacaacatttcatattggaaa 600

                                                                       
Query: 601 tgaaatatttagcaacttttgctggtaaatatcctgttgaagattcaacttttgaattaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tgaaatatttagcaacttttgctggtaaatatcctgttgaagattcaacttttgaattaa 660

                                                                       
Query: 661 ttaatacaatgattagaaatcataaagaaatttatttaaataatacttctgatccaaaac 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ttaatacaatgattagaaatcataaagaaatttatttaaataatacttctgatccaaaac 720

                                                                       
Query: 721 ctttaaaaactgaagaatattttacttcaatcattgataatttagtttatcaaaaagcag 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ctttaaaaactgaagaatattttacttcaatcattgataatttagtttatcaaaaagcag 780

                   
Query: 781 tttataat 788
           ||||||||
Sbjct: 781 tttataat 788


>Contig-U15324-1 (Contig-U15324-1Q) /CSM_Contig/Contig-U15324-1Q.Seq.d
          Length = 2104

 Score = 38.2 bits (19), Expect = 0.021
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 642  gattcaacttttgaattaattaa 664
            |||||| ||||||||||||||||
Sbjct: 1079 gattcagcttttgaattaattaa 1101


 Score = 38.2 bits (19), Expect = 0.021
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 642 gattcaacttttgaattaattaa 664
           |||||| ||||||||||||||||
Sbjct: 578 gattcagcttttgaattaattaa 600


>Contig-U14691-1 (Contig-U14691-1Q) /CSM_Contig/Contig-U14691-1Q.Seq.d
          Length = 2424

 Score = 38.2 bits (19), Expect = 0.021
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 110  tatgagttatttaaaaaat 128
            |||||||||||||||||||
Sbjct: 1441 tatgagttatttaaaaaat 1459


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,078
Number of Sequences: 8402
Number of extensions: 21078
Number of successful extensions: 2295
Number of sequences better than 10.0: 259
length of query: 835
length of database: 8,075,542
effective HSP length: 16
effective length of query: 819
effective length of database: 7,941,110
effective search space: 6503769090
effective search space used: 6503769090
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.25
Homology vs DNA 
Query= Contig-U15414-1 (Contig-U15414-1Q) /CSM_Contig/Contig-U15414-1Q.Seq.d
         (835 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ407621) Dictyostelium discoideum cDNA clone:dds43k02, 3' ...  1552   0.0    1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    54   0.009  1
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    54   0.009  1
(AC130444) Rattus norvegicus clone CH230-473E6, *** SEQUENCI...    52   0.034  1
(FF090709) CPAD-aaa77g08.b1 PB2801_EST_CPAD1 Caenorhabditis ...    50   0.13   1
(FF086108) CPAD-aaa71g03.b1 PB2801_EST_CPAD1 Caenorhabditis ...    50   0.13   1
(FD511890) C4_TOmix_03H05_TW C4_TOmix Caenorhabditis brenner...    50   0.13   1
(DQ229107) Chara vulgaris chloroplast, complete genome.            34   0.28   8
(AC113305) Mus musculus chromosome 10, clone RP23-433H22, co...    38   0.30   2
(DQ927303) Tetrahymena malaccensis strain MP75 mitochondrion...    36   0.33   7
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    32   0.35   15
(AY258288) Mus musculus membrane-spanning 4-domains subfamil...    48   0.35   2
(BV036230) S212P6953FH2.T0 CZECHII/Ei Mus musculus STS genom...    38   0.39   2
(AC165168) Mus musculus BAC clone RP23-12D3 from chromosome ...    48   0.53   1
(AC156615) Mus musculus chromosome 3, clone RP23-1B20, compl...    48   0.53   1
(AC132093) Mus musculus BAC clone RP24-506H13 from chromosom...    48   0.53   1
(AC127289) Mus musculus BAC clone RP23-359O14 from chromosom...    48   0.53   1
(AC010602) Homo sapiens chromosome 5 clone CTB-122H10, compl...    48   0.53   1
(AC149844) Papio anubis clone RP41-130L8, WORKING DRAFT SEQU...    48   0.53   1
(AC128343) Rattus norvegicus clone CH230-105F16, WORKING DRA...    48   0.53   1
(AC115241) Rattus norvegicus clone CH230-234J7, WORKING DRAF...    48   0.53   1
(AC094121) Rattus norvegicus clone CH230-2O6, WORKING DRAFT ...    48   0.53   1
(AC022802) Homo sapiens chromosome 2 clone RP11-364F5 map 2,...    48   0.53   1
(AC015479) Homo sapiens chromosome 2 clone RP11-505G12 map 2...    48   0.53   1
(AC010224) Homo sapiens chromosome 5 clone CTC-283G1, WORKIN...    48   0.53   1
(DE873249) Macropus eugenii DNA, BAC clone: MEB1-043O08_R, 3...    48   0.53   1
(CZ171357) MIAA-7M20c.b1 Meloidogyne incognita BAC end seque...    48   0.53   1
(EL865163) CBXT19586.g1 NICHD_XGC_trop_25 Xenopus (Silurana)...    48   0.53   1
(DR877686) JGI_CABI1293.fwd NIH_XGC_tropOvi1 Xenopus (Silura...    48   0.53   1
(DR877685) JGI_CABI1293.rev NIH_XGC_tropOvi1 Xenopus (Silura...    48   0.53   1
(DC183498) Xenopus (Silurana) tropicalis NBRP cDNA clone: st...    48   0.53   1
(DC179178) Xenopus (Silurana) tropicalis NBRP cDNA clone: st...    48   0.53   1
(DC179022) Xenopus (Silurana) tropicalis NBRP cDNA clone: st...    48   0.53   1
(DC178966) Xenopus (Silurana) tropicalis NBRP cDNA clone: st...    48   0.53   1
(DC178706) Xenopus (Silurana) tropicalis NBRP cDNA clone: st...    48   0.53   1
(DB762166) Apis mellifera head cDNA, RIKEN full-length enric...    48   0.53   1
(CX364645) JGI_XZT25281.rev NIH_XGC_tropTad5 Xenopus (Silura...    48   0.53   1
(CR414704) Xenopus tropicalis EST, clone TTbA010h22 3'.            48   0.53   1
(AL885782) Xenopus tropicalis EST, clone TEgg017a06 3'.            48   0.53   1
(AL854867) Xenopus tropicalis EST, clone TEgg004h24 3'.            48   0.53   1
(ES673513) CCAX1133.g1 NICHD_XGC_tropEye1 Xenopus (Silurana)...    48   0.53   1
(EA102813) Sequence 196 from patent US 7195870.                    40   0.75   2
(AX344871) Sequence 296 from Patent WO0200927.                     40   0.75   2
(AX323802) Sequence 290 from Patent WO0192565.                     40   0.75   2
(AX278033) Sequence 196 from Patent WO0177375.                     40   0.75   2
(AF409138) Lumpy skin disease virus isolate Neethling vaccin...    40   0.81   7
(CT027665) Medicago truncatula chromosome 5 clone mth2-69e15...    34   1.1    6
(AC163725) Pan troglodytes BAC clone CH251-612A20 from chrom...    42   1.1    2
(AC161621) Pan troglodytes BAC clone CH251-164P18 from chrom...    42   1.1    3
(ES398122) MUT13-K14.x1d-t SHGC-MUT Mytilus californianus cD...    34   1.1    3
(AC171314) Mus musculus chromosome 15 clone RP24-98L11 map 1...    38   1.1    3
(U41016) Caenorhabditis elegans cosmid R11G1, complete seque...    40   1.2    4
(AC125700) Rattus norvegicus clone CH230-12K11, *** SEQUENCI...    34   1.2    8
(AC008246) Homo sapiens chromosome 11 clone RP11-26C9 map 11...    42   1.5    6
(AP007419) Lotus japonicus genomic DNA, chromosome 5, clone:...    40   1.6    6
(AM438800) Vitis vinifera, whole genome shotgun sequence, co...    40   1.6    4
(AC174791) Glycine tomentella clone gtd1-6a2, WORKING DRAFT ...    32   1.6    8
(EJ696384) 1092956019675 Global-Ocean-Sampling_GS-30-02-01-1...    42   1.7    2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    36   1.9    11
(CU694487) Zebrafish DNA sequence from clone DKEY-89G21 in l...    46   2.1    1
(BV656554) S217P62048RG10.T0 Noemie Pan troglodytes troglody...    46   2.1    1
(AC144792) Mus musculus BAC clone RP24-501M24 from chromosom...    46   2.1    1
(AC139129) Mus musculus chromosome 1, clone RP24-245K18, com...    46   2.1    1
(AC132393) Mus musculus BAC clone RP23-386K20 from 1, comple...    46   2.1    1
(AC124552) Mus musculus BAC clone RP23-222M11 from chromosom...    46   2.1    1
(AC124121) Mus musculus chromosome 8, clone RP23-169B14, com...    46   2.1    1
(AM466300) Vitis vinifera, whole genome shotgun sequence, co...    46   2.1    1
(AC150442) Medicago truncatula chromosome 7 clone mth2-2o12,...    46   2.1    1
(AC139854) Medicago truncatula clone mth2-16e16, complete se...    46   2.1    1
(AC226433) Bos taurus Y Chr NOVECTOR CH240-304N9 (Children's...    46   2.1    1
(AL512368) Human DNA sequence from clone RP11-387L5 on chrom...    46   2.1    1
(AC034246) Homo sapiens chromosome 5 clone RP11-160F8, compl...    46   2.1    1
(AC016580) Homo sapiens chromosome 5 clone CTD-2509J24, comp...    46   2.1    1
(AC026476) Homo sapiens chromosome 5 clone RP11-87I15, WORKI...    46   2.1    1
(AL512455) Human DNA sequence *** SEQUENCING CANCELLED *** f...    46   2.1    1
(AC008777) Homo sapiens chromosome 5 clone CTD-2022G9, WORKI...    46   2.1    1
(AK053246) Mus musculus 0 day neonate lung cDNA, RIKEN full-...    46   2.1    1
(AZ579804) 1M0367J23R Mouse 10kb plasmid UUGC1M library Mus ...    46   2.1    1
(AZ420280) 1M0198K06F Mouse 10kb plasmid UUGC1M library Mus ...    46   2.1    1
(AL985879) Danio rerio genomic clone DKEY-25P16, genomic sur...    46   2.1    1
(DE850076) Macropus eugenii DNA, BAC clone: MEB1-012O06_R, 3...    46   2.1    1
(CU832960) A BAC library has been constructed from PN40024 g...    46   2.1    1
(CR310096) mte1-31F1RM1 BAC end, cultivar Jemalong A17 of Me...    46   2.1    1
(CE103054) tigr-gss-dog-17000371132715 Dog Library Canis lup...    46   2.1    1
(BX175067) Danio rerio genomic clone DKEY-184K24, genomic su...    46   2.1    1
(EC295983) OVARYF089652O13 POSSUM_01-POSSUM-C-OVARY-2KB Tric...    46   2.1    1
(BB536467) Mus musculus 0 day neonate lung cDNA, RIKEN full-...    46   2.1    1
(GE531342) CCHS18095.b1_M11.ab1 CCHS Espina Barnadesia spino...    46   2.1    1
(AE017263) Mesoplasma florum L1 complete genome.                   46   2.1    1
(AC175271) Bos taurus Y Chr BAC CH240-457N11 (Children's Hos...    44   2.6    3
(CU855884) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    36   3.0    6
(AC218086) Spermophilus tridecemlineatus clone VMRC20-163K11...    44   3.0    4
(AL139375) Human DNA sequence from clone RP11-138N13 on chro...    36   3.0    5
(AR584244) Sequence 1 from patent US 6797466.                      34   3.4    2
(AR271569) Sequence 1 from patent US 6503729.                      34   3.4    2
(L77117) Methanocaldococcus jannaschii DSM 2661, complete ge...    34   3.4    2
(BX005404) Zebrafish DNA sequence from clone DKEY-21I14 in l...    44   3.9    5
(FP067373) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   4.0    2
(AL390894) Human chromosome 14 DNA sequence BAC R-572M18 of ...    34   4.0    2
(CU657964) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   4.0    2
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI...    36   4.4    8
(U21318) Caenorhabditis elegans cosmid K03H9, complete seque...    32   4.4    2
(AC115063) Mus musculus chromosome 1, clone RP24-400H18, com...    38   4.7    6
(EK261677) 1095462170658 Global-Ocean-Sampling_GS-31-01-01-1...    40   4.8    2
(AE015929) Staphylococcus epidermidis ATCC 12228, complete g...    42   5.0    21
(ER576846) 1093015815380 Global-Ocean-Sampling_GS-36-01-01-2...    38   5.0    2
(CU929599) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   5.4    3
(AC098109) Rattus norvegicus clone CH230-126I13, *** SEQUENC...    38   5.4    2
(AY077834) Sheeppox virus NISKHI, complete genome.                 40   5.5    6
(AY077832) Sheeppox virus 10700-99 strain TU-V02127, complet...    40   5.5    6
(AY077833) Sheeppox virus A, complete genome.                      40   5.5    6
(AZ548078) ENTGA38TF Entamoeba histolytica Sheared DNA Entam...    36   5.6    2
(AC173213) Strongylocentrotus purpuratus clone R3-3065G23, W...    40   5.7    5
(CC535360) CH240_414I11.T7 CHORI-240 Bos taurus genomic clon...    42   6.1    2
(EI538874) Wang-VSVGgfp-Jurkat-454-Avr-057805_0746_2125 Wang...    36   6.2    2
(AC187973) Canis Familiaris chromosome 11, clone XX-107E19, ...    44   6.3    6
(DQ866050) Simosyrphus grandicornis mitochondrion, complete ...    34   6.4    4
(AM458513) Vitis vinifera contig VV78X127444.7, whole genome...    36   6.8    4
(AB425711) Chrysolina aurichalcea mitochondrial ND2 gene for...    38   6.8    2
(AB425670) Chrysolina aurichalcea mitochondrial ND2 gene for...    38   6.8    2
(AB425663) Chrysolina aurichalcea mitochondrial ND2 gene for...    38   6.8    2
(AB425662) Chrysolina aurichalcea mitochondrial ND2 gene for...    38   6.8    2
(AB425661) Chrysolina aurichalcea mitochondrial ND2 gene for...    38   6.8    2
(AB425660) Chrysolina aurichalcea mitochondrial ND2 gene for...    38   6.8    2
(AB425541) Chrysolina aurichalcea mitochondrial ND2 gene for...    38   6.8    2
(AB425540) Chrysolina aurichalcea mitochondrial ND2 gene for...    38   6.8    2
(AB425488) Chrysolina aurichalcea mitochondrial ND2 gene for...    38   6.8    2
(AY653733) Acanthamoeba polyphaga mimivirus, complete genome.      34   6.8    17
(EK301450) 1095462366127 Global-Ocean-Sampling_GS-31-01-01-1...    38   6.9    2
(AL138656) Arabidopsis thaliana DNA chromosome 3, BAC clone ...    36   7.5    5
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    32   7.5    10
(AC159997) Mus musculus chromosome 15 clone RP24-403A9 map 1...    38   7.7    3
(AC166244) Mus musculus chromosome 15, clone RP24-403A9, com...    38   8.1    3
(CR942805) Zebrafish DNA sequence from clone DKEY-230A20 in ...    44   8.3    1
(BX908796) Zebrafish DNA sequence from clone CH211-198E20 in...    44   8.3    1
(BX901901) Zebrafish DNA sequence from clone CH211-223B8 in ...    44   8.3    1
(BX005319) Zebrafish DNA sequence from clone DKEY-10F23.           44   8.3    1
(BV267464) S235P6219FG12.T0 ItalianGreyhound Canis familiari...    44   8.3    1
(BX284683) Mouse DNA sequence from clone RP23-316G5 on chrom...    44   8.3    1
(AL671991) Mouse DNA sequence from clone RP23-343L7 on chrom...    44   8.3    1
(AC141637) Mus musculus BAC clone RP23-424D5 from 9, complet...    44   8.3    1
(AC134914) Mus musculus BAC clone RP23-227C5 from 9, complet...    44   8.3    1
(AC101911) Mus musculus chromosome 19, clone RP24-374E20, co...    44   8.3    1
(DQ822577) Sabatia campestris clone Sc1 microsatellite seque...    44   8.3    1
(AM440722) Vitis vinifera contig VV78X001142.7, whole genome...    44   8.3    1
(AM434418) Vitis vinifera contig VV78X267046.5, whole genome...    44   8.3    1
(AM426895) Vitis vinifera contig VV78X118313.5, whole genome...    44   8.3    1
(AM397737) Herbertus aduncus chloroplast tRNA-Gly gene, spec...    44   8.3    1
(AC185958) Glycine tomentella clone gtd1-181e18, complete se...    44   8.3    1
(AC218129) Bos taurus  BAC CH240-335I4 (Children's Hospital ...    44   8.3    1
(AC205958) Canis familiaris, clone XX-179B3, complete sequence.    44   8.3    1
(AL023828) Caenorhabditis elegans YAC Y17G7B.                      44   8.3    1
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5...    44   8.3    1
(AL445219) Human DNA sequence from clone RP11-71L7 on chromo...    44   8.3    1
(AC207447) Homo sapiens FOSMID clone ABC9-43952900L11 from c...    44   8.3    1
(AC104660) Homo sapiens BAC clone RP11-614H7 from 4, complet...    44   8.3    1
(AC013476) Homo sapiens BAC clone RP11-525G12 from 2, comple...    44   8.3    1
(AC008657) Homo sapiens chromosome 5 clone CTB-19H10, comple...    44   8.3    1
(AC110983) Rattus norvegicus clone CH230-127D20, WORKING DRA...    44   8.3    1
(AC105382) Homo sapiens chromosome 4 clone RP11-8N5, *** SEQ...    44   8.3    1
(AC096600) Rattus norvegicus clone CH230-111A10, WORKING DRA...    44   8.3    1
(AC096028) Rattus norvegicus clone CH230-34F18, *** SEQUENCI...    44   8.3    1
(CU655861) M.truncatula DNA sequence *** SEQUENCING IN PROGR...    44   8.3    1
(AC084860) Homo sapiens chromosome 8 clone CTC-781E15 map 8,...    44   8.3    1
(AC230570) Bos taurus clone CH240-504L15, WORKING DRAFT SEQU...    44   8.3    1
(AC189977) Glycine tomentella clone gtd1-55n8, WORKING DRAFT...    44   8.3    1
(AC184662) Strongylocentrotus purpuratus clone R3-3072K1, WO...    44   8.3    1
(AC164369) Bos taurus clone CH240-133C10, *** SEQUENCING IN ...    44   8.3    1
(AZ572658) 308PvE05 Pv MBN #30 Plasmodium vivax genomic 3', ...    44   8.3    1
(FI254266) CccaBb041-O2JF CccABb Cajanus cajan genomic clone...    44   8.3    1
(ET015471) MUGQ_CH252P319F04T7_CP596_012 CHORI-252 Vervet Mo...    44   8.3    1
(ER760295) SB_BBc144-K05.R SB_BBc Sorghum bicolor genomic 3'...    44   8.3    1
(EJ547831) 1092959415668 Global-Ocean-Sampling_GS-29-01-01-1...    44   8.3    1
(EJ519591) 1092955129725 Global-Ocean-Sampling_GS-29-01-01-1...    44   8.3    1
(EJ207003) 1092344361651 Global-Ocean-Sampling_GS-27-01-01-1...    44   8.3    1
(EJ141450) 1092343655679 Global-Ocean-Sampling_GS-27-01-01-1...    44   8.3    1
(ED106605) AUAC-aav77e02.g1 Ascaris suum whole genome shotgu...    44   8.3    1
(ED096808) AUAC-aar39h09.b1 Ascaris suum whole genome shotgu...    44   8.3    1
(DX445259) BE2018_G19_F IASMA L2 HindIII BAC library Vitis v...    44   8.3    1
(DU879929) 295567 Tomato HindIII BAC Library Solanum lycoper...    44   8.3    1
(CG025070) ZMMBBc0562J02r ZMMBBc Zea mays subsp. mays genomi...    44   8.3    1
(BZ505103) BONIM87TF BO_1.6_2_KB_tot Brassica oleracea genom...    44   8.3    1
(AA550482) 1636m3 gmbPfHB3.1, G. Roman Reddy Plasmodium falc...    44   8.3    1
(DW992228) EST44609 Salivary Gland 1 Aedes aegypti cDNA clon...    44   8.3    1
(BM168150) EST570673 PyBS Plasmodium yoelii yoelii cDNA clon...    44   8.3    1
(BB981106) Plasmodium berghei str. ANKA cDNA clone: OK011338...    44   8.3    1
(FG689285) G1144P334FC12.T0 Anolis carolinensis pooled norma...    44   8.3    1
(AE013028) Thermoanaerobacter tengcongensis MB4, section 55 ...    44   8.3    1
(ER467490) 1092963930693 Global-Ocean-Sampling_GS-35-01-01-1...    34   8.4    3
(AC150858) Bos taurus clone CH240-431L22, WORKING DRAFT SEQU...    36   8.8    6
(AZ528080) ENTBY71TF Entamoeba histolytica Sheared DNA Entam...    34   9.0    3
(EA700568) Sequence 79447 from patent US 7365185.                  36   9.1    4
(AZ672499) ENTHO40TR Entamoeba histolytica Sheared DNA Entam...    34   9.3    3
(AY166675) Plasmodium reichenowi RBL1 pseudogene, complete s...    34   9.4    3
(AE014134) Drosophila melanogaster chromosome 2L, complete s...    30   9.6    2
(AC120202) Papio anubis clone RP41-81C4, WORKING DRAFT SEQUE...    36   9.6    6

>(BJ407621) Dictyostelium discoideum cDNA clone:dds43k02, 3' end,
           single read.
          Length = 835

 Score = 1552 bits (783), Expect = 0.0
 Identities = 783/783 (100%)
 Strand = Plus / Minus


Query: 1   atttttaaatacaataattcaaaagtttgcaattgatatttgtccaaattattacaattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 atttttaaatacaataattcaaaagtttgcaattgatatttgtccaaattattacaattg 776


Query: 61  atttgataccagtgatttctcaatcacttggtagtattttcaaagattatatgagttatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 atttgataccagtgatttctcaatcacttggtagtattttcaaagattatatgagttatt 716


Query: 121 taaaaaatgaaattcaaaaagaatatttatcagatactcaatgtttggcgatcattagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 taaaaaatgaaattcaaaaagaatatttatcagatactcaatgtttggcgatcattagtg 656


Query: 181 attcagtttatattgtcgatgatttagtatcaagaattgcaactagattcgaagatgcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 attcagtttatattgtcgatgatttagtatcaagaattgcaactagattcgaagatgcaa 596


Query: 241 caggtgagaaattaaataacctaactcagttatcgtcattgttgtatagttatttcgagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 caggtgagaaattaaataacctaactcagttatcgtcattgttgtatagttatttcgagt 536


Query: 301 caattagagaccaatattcaactagaaaagcattggaattggtggataatagtatgaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 caattagagaccaatattcaactagaaaagcattggaattggtggataatagtatgaatt 476


Query: 361 gggaagaacaagaatatcaagtcgaggaagagttggacccatttccaaagaattttattg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gggaagaacaagaatatcaagtcgaggaagagttggacccatttccaaagaattttattg 416


Query: 421 ttttatcagaagctttggatagattggctgaatcaattcaaaccaatgtcaatgttgaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ttttatcagaagctttggatagattggctgaatcaattcaaaccaatgtcaatgttgaaa 356


Query: 481 gtgttttaccaattgcctctagaatcatctctgaaatcgttaatatcatttcaaatagat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gtgttttaccaattgcctctagaatcatctctgaaatcgttaatatcatttcaaatagat 296


Query: 541 tcgaatctacttcaaatttggttttcggttatggtggtttacaacatttcatattggaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tcgaatctacttcaaatttggttttcggttatggtggtttacaacatttcatattggaaa 236


Query: 601 tgaaatatttagcaacttttgctggtaaatatcctgttgaagattcaacttttgaattaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 tgaaatatttagcaacttttgctggtaaatatcctgttgaagattcaacttttgaattaa 176


Query: 661 ttaatacaatgattagaaatcataaagaaatttatttaaataatacttctgatccaaaac 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 ttaatacaatgattagaaatcataaagaaatttatttaaataatacttctgatccaaaac 116


Query: 721 ctttaaaaactgaagaatattttacttcaatcattgataatttagtttatcaaaaagcag 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 ctttaaaaactgaagaatattttacttcaatcattgataatttagtttatcaaaaagcag 56


Query: 781 ttt 783
           |||
Sbjct: 55  ttt 53

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,104,180,136
Number of extensions: 70724615
Number of successful extensions: 6082861
Number of sequences better than 10.0: 198
Length of query: 835
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 811
Effective length of database: 96,409,374,237
Effective search space: 78188002506207
Effective search space used: 78188002506207
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.16
Homology vs Protein 
Query= Contig-U15414-1 (Contig-U15414-1Q) /CSM_Contig/Contig-U15414-1Q.Seq.d
         (835 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001097_1(CP001097|pid:none) Chlorobium limicola DSM 245, compl...    34   5.2
CP000425_1230(CP000425|pid:none) Lactococcus lactis subsp. cremo...    34   6.7
(Q5HTR3) RecName: Full=5-methyltetrahydropteroyltriglutamate--ho...    33   8.8
(A8FMQ7) RecName: Full=5-methyltetrahydropteroyltriglutamate--ho...    33   8.8
(A1W0I5) RecName: Full=5-methyltetrahydropteroyltriglutamate--ho...    33   8.8

>CP001097_1(CP001097|pid:none) Chlorobium limicola DSM 245, complete
           genome.
          Length = 491

 Score = 34.3 bits (77), Expect = 5.2
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
 Frame = +3

Query: 435 LDRLAESIQTNVNVESVLPIAS-RIISEIVNIISNRFESTSNLVFGYGGLQHF------- 590
           +  +  S++TN   E VL ++S +   + VN I N            G +Q F
Sbjct: 203 IQAIGNSVRTNCLSEKVLYVSSEKFAIDFVNAIQN------------GKIQEFSSFYRTI 250

Query: 591 -ILEMKYLATFAGKYPVEDSTFELINTMIRNHKEIYLNNTSDPKPLK 728
            +L +  +  FAGK   ++  F + NT+ +++K+I L+     K +K
Sbjct: 251 DVLIIDDIQFFAGKEKTQEEIFHIFNTLHQSNKQIILSADRPIKEIK 297

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,066,253,356
Number of extensions: 18486863
Number of successful extensions: 47274
Number of sequences better than 10.0: 5
Number of HSP's gapped: 47266
Number of HSP's successfully gapped: 5
Length of query: 278
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 151
Effective length of database: 640,137,871
Effective search space: 96660818521
Effective search space used: 96660818521
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.92  gvh: 0.53  alm: 0.26  top: 0.40  tms: 0.07  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 16.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	  8.0 %: Golgi
	  8.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall

>> prediction for Contig-U15414-1 is end
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0