Contig-U03010-1
Contig ID Contig-U03010-1
Contig update 2002. 9.13
Contig sequence
>Contig-U03010-1 (Contig-U03010-1Q) /CSM_Contig/Contig-U03010-1Q.Seq.d
CAATCTAAAAATAAATATTTAATAAATAAACAAACTAATACAAATAAATA
AAAATAATAGTAATAAACAAATAAATATAAAAAAAGAAATTTACGTATAT
AATAAAATTATGGATACAAAGATTGATTATCAACCAACTATACAAGAAGA
TAAAGTTGTTGATATAAAATATAATATTAGTAGTAGCGATGATGGTAATG
TAATCAATATGAGTGGTGGTGGTGGTGGCGGTGATGTTGGTAATAGTTGT
TGTATCTCTGAAGATAATCATCAAAAAGGAATCATTAGAAATAGTAGTAG
TGGTACAATTAACAATATTTTAGGTACAGATGATAATAATAATAATAATA
ATAATAATAATAGTAATAACAAAAATAGCAATAATAATGATACAACAAAC
TCTACCATAACAAATTCTACTTCAACTAATTTACCAATAAAAACATATAT
TGAATCACCAAAATCAATATCATCAGACTCTTCCTCAGTTTCATCATCTT
TGTATGAACCAATTGTAAAAGAAATAAATGAATTTATAAATCCGCCATCC
ATAACATCATCTCAAACCATCATAAACAATCAAGAAGAAAAAGATATTGA
AAATAAAACAATTGTAAATAATAATAATAATAATAATAGTTTAAATGATA
GTATAAGTAGTAGTAGTAGTAGTAATAGTAGTAGTAATAGTAATAATGAA
GAATCAAATACAATAACAAAAATTTCACCAACAATTAGAGCAGTAACAAG
ATCCATCACCATTTTATAATTCTAA

Gap no gap
Contig length 775
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 2
Number of EST 2
Link to clone list U03010
List of clone(s)

est1=AFO116F,1,691
est2=SSK211F,124,776
Translated Amino Acid sequence
nlkini**INKLIQINKNNSNKQINIKKEIYVYNKIMDTKIDYQPTIQEDKVVDIKYNIS
SSDDGNVINMSGGGGGGDVGNSCCISEDNHQKGIIRNSSSGTINNILGTDDNNNNNNNNN
SNNKNSNNNDTTNSTITNSTSTNLPIKTYIESPKSISSDSSSVSSSLYEPIVKEINEFIN
PPSITSSQTIINNQEEKDIENKTIVNNNNNNNSLNDSISSSSSSNSSSNSNNEESNTITK
ISPTIRAVTRSITIL*f*


Translated Amino Acid sequence (All Frames)
Frame A:
qsknkylinkqtntnk*k****tnkykkrnlri**nygykd*lstnytrr*sc*yki*y*
**r*w*cnqyewwwwwr*cw**llyl*r*sskrnh*k***wyn*qyfryr**********
***qk*q***ynklyhnkfyfn*ftnkniy*itkiniirlflsfiifv*tnckrnk*iyk
saihniisnhhkqsrrkry*k*nnck*******fk**yk**************rikynnk
nftnn*ssnkihhhfiil


Frame B:
nlkini**INKLIQINKNNSNKQINIKKEIYVYNKIMDTKIDYQPTIQEDKVVDIKYNIS
SSDDGNVINMSGGGGGGDVGNSCCISEDNHQKGIIRNSSSGTINNILGTDDNNNNNNNNN
SNNKNSNNNDTTNSTITNSTSTNLPIKTYIESPKSISSDSSSVSSSLYEPIVKEINEFIN
PPSITSSQTIINNQEEKDIENKTIVNNNNNNNSLNDSISSSSSSNSSSNSNNEESNTITK
ISPTIRAVTRSITIL*f*


Frame C:
i*k*ifnk*tn*yk*ikiivink*i*kkkftyiiklwiqrliinqlykkiklli*niilv
vammvm*si*vvvvvavmlvivvvslkiiikkesleivvvvqltif*vqmiiiiiiiiii
vitkiaiimiqqtlp*qillqliyq*khilnhqnqyhqtlpqfhhlcmnql*kk*mnl*i
rhp*hhlkps*tikkkkilkikql*iiiiiiiv*miv*vvvvvvivvvivimknqiq*qk
fhqqleq*qdpspfyns


own update 2004. 6. 9
Homology vs CSM-cDNA
Query= Contig-U03010-1 (Contig-U03010-1Q)
/CSM_Contig/Contig-U03010-1Q.Seq.d
(775 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U03010-1 (Contig-U03010-1Q) /CSM_Contig/Conti... 490 e-138
Contig-U12772-1 (Contig-U12772-1Q) /CSM_Contig/Conti... 44 2e-04
Contig-U11414-1 (Contig-U11414-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U04133-1 (Contig-U04133-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U02699-1 (Contig-U02699-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U14601-1 (Contig-U14601-1Q) /CSM_Contig/Conti... 38 0.014
Contig-U11467-1 (Contig-U11467-1Q) /CSM_Contig/Conti... 38 0.014
Contig-U11110-1 (Contig-U11110-1Q) /CSM_Contig/Conti... 38 0.014
Contig-U11089-1 (Contig-U11089-1Q) /CSM_Contig/Conti... 38 0.014
Contig-U11888-1 (Contig-U11888-1Q) /CSM_Contig/Conti... 34 0.22

>Contig-U03010-1 (Contig-U03010-1Q) /CSM_Contig/Contig-U03010-1Q.Seq.d
Length = 775

Score = 490 bits (247), Expect = e-138
Identities = 247/247 (100%)
Strand = Plus / Plus


Query: 86 gaaatttacgtatataataaaattatggatacaaagattgattatcaaccaactatacaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 gaaatttacgtatataataaaattatggatacaaagattgattatcaaccaactatacaa 145


Query: 146 gaagataaagttgttgatataaaatataatattagtagtagcgatgatggtaatgtaatc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 gaagataaagttgttgatataaaatataatattagtagtagcgatgatggtaatgtaatc 205


Query: 206 aatatgagtggtggtggtggtggcggtgatgttggtaatagttgttgtatctctgaagat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aatatgagtggtggtggtggtggcggtgatgttggtaatagttgttgtatctctgaagat 265


Query: 266 aatcatcaaaaaggaatcattagaaatagtagtagtggtacaattaacaatattttaggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aatcatcaaaaaggaatcattagaaatagtagtagtggtacaattaacaatattttaggt 325


Query: 326 acagatg 332
|||||||
Sbjct: 326 acagatg 332


Score = 448 bits (226), Expect = e-126
Identities = 226/226 (100%)
Strand = Plus / Plus


Query: 389 gatacaacaaactctaccataacaaattctacttcaactaatttaccaataaaaacatat 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gatacaacaaactctaccataacaaattctacttcaactaatttaccaataaaaacatat 448


Query: 449 attgaatcaccaaaatcaatatcatcagactcttcctcagtttcatcatctttgtatgaa 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 attgaatcaccaaaatcaatatcatcagactcttcctcagtttcatcatctttgtatgaa 508


Query: 509 ccaattgtaaaagaaataaatgaatttataaatccgccatccataacatcatctcaaacc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ccaattgtaaaagaaataaatgaatttataaatccgccatccataacatcatctcaaacc 568


Query: 569 atcataaacaatcaagaagaaaaagatattgaaaataaaacaattg 614
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 atcataaacaatcaagaagaaaaagatattgaaaataaaacaattg 614


Score = 165 bits (83), Expect = 9e-41
Identities = 83/83 (100%)
Strand = Plus / Plus


Query: 693 ataatgaagaatcaaatacaataacaaaaatttcaccaacaattagagcagtaacaagat 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ataatgaagaatcaaatacaataacaaaaatttcaccaacaattagagcagtaacaagat 752


Query: 753 ccatcaccattttataattctaa 775
|||||||||||||||||||||||
Sbjct: 753 ccatcaccattttataattctaa 775


>Contig-U12772-1 (Contig-U12772-1Q) /CSM_Contig/Contig-U12772-1Q.Seq.d
Length = 534

Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus


Query: 279 gaatcattagaaatagtagtagtggt 304
||||||||||| ||||||||||||||
Sbjct: 330 gaatcattagatatagtagtagtggt 355


Score = 32.2 bits (16), Expect = 0.85
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 485 tcagtttcatcatctt 500
||||||||||||||||
Sbjct: 150 tcagtttcatcatctt 135


>Contig-U11414-1 (Contig-U11414-1Q) /CSM_Contig/Contig-U11414-1Q.Seq.d
Length = 1931

Score = 40.1 bits (20), Expect = 0.003
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 214 tggtggtggtggtggcggtg 233
||||||||||||||||||||
Sbjct: 1021 tggtggtggtggtggcggtg 1040


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,188
Number of Sequences: 6905
Number of extensions: 14188
Number of successful extensions: 2490
Number of sequences better than 10.0: 359
length of query: 775
length of database: 5,674,871
effective HSP length: 16
effective length of query: 759
effective length of database: 5,564,391
effective search space: 4223372769
effective search space used: 4223372769
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.24
Homology vs DNA
Query= Contig-U03010-1 (Contig-U03010-1Q) /CSM_Contig/Contig-U03010-1Q.Seq.d
(775 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AF310892) Dictyostelium discoideum citrate synthase (gltA) ... 436 0.0 4
(AC115584) Dictyostelium discoideum chromosome 2 map complem... 444 0.0 4
(BJ328719) Dictyostelium discoideum cDNA clone:dda29o03, 5' ... 444 0.0 2
(AU074278) Dictyostelium discoideum slug cDNA, clone SSK211. 414 e-111 1
(AC127179) Rattus norvegicus clone CH230-121D22, *** SEQUENC... 44 0.001 2
(AC205956) Canis lupus familiaris clone XX-208J15, *** SEQUE... 56 0.002 1
(AC205946) Canis lupus familiaris clone XX-146L8, *** SEQUEN... 56 0.002 1
(CT027738) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 0.003 6
(DW083509) CLPX6258.b1_D05.ab1 CLP(XYZ) lettuce perennis Lac... 52 0.007 2
(AC176226) Strongylocentrotus purpuratus clone R3-3062L2, WO... 50 0.010 4
(AC184941) Bos taurus clone CH240-310C21, WORKING DRAFT SEQU... 46 0.017 5
(AC180451) Strongylocentrotus purpuratus clone R3-3103B15, W... 42 0.028 6
(AC187621) Pan troglodytes BAC clone CH251-458G17 from chrom... 52 0.032 1
(AC096176) Rattus norvegicus clone CH230-11D3, WORKING DRAFT... 52 0.032 1
(AC178350) Strongylocentrotus purpuratus clone R3-3105J21, W... 52 0.032 1
(DH541335) Rattus norvegicus DNA, BAC clone: RNB1-046D04, 5'... 52 0.032 1
(EB051995) StheSEQ10748 Sporotrichum thermophile pBluescript... 52 0.032 1
(AA735332) LD21122.5prime LD Drosophila melanogaster embryo ... 52 0.032 1
(AK118440) Arabidopsis thaliana At4g02650 mRNA for putative ... 50 0.060 2
(AC117969) Rattus norvegicus clone CH230-301F11, WORKING DRA... 44 0.069 2
(AP004943) Lotus japonicus genomic DNA, chromosome 3, clone:... 44 0.072 6
(AC124873) Rattus norvegicus clone CH230-23M5, *** SEQUENCIN... 50 0.077 2
(AC090652) Mus musculus strain C57BL/6J chromosome 7 clone r... 38 0.077 2
(AC187331) Canis lupus familiaris chromosome 3 clone 14_J_6 ... 34 0.078 2
(AC123552) Mus musculus chromosome 7 clone RP24-396I18, comp... 38 0.078 2
(DW507396) GH_TMIRS_114_A04_F Cotton Normalized Library dT p... 48 0.084 2
(AC123107) Rattus norvegicus clone CH230-141K8, *** SEQUENCI... 50 0.090 2
(FE759212) CAYF6763.b2 CAYF Petrolisthes cinctipes heart, wh... 36 0.10 2
(AC153493) Mus musculus 10 BAC RP23-23J2 (Roswell Park Cance... 46 0.11 3
(FJ632593) Synthetic construct Drosophila melanogaster clone... 50 0.13 1
(AL844604) Mouse DNA sequence from clone RP24-318C20 on chro... 50 0.13 1
(AL773520) Mouse DNA sequence from clone RP23-350F23 on chro... 50 0.13 1
(AL670884) Mouse DNA sequence from clone RP23-372M15 on chro... 50 0.13 1
(AL590649) Mouse DNA sequence from clone RP23-100J5 on chrom... 50 0.13 1
(AC162690) Mus musculus chromosome 5, clone RP24-170F2, comp... 50 0.13 1
(AC132235) Mus musculus BAC clone RP24-497H15 from chromosom... 50 0.13 1
(AC125109) Mus musculus BAC clone RP24-232H5 from chromosome... 50 0.13 1
(AP006494) Cyanidioschyzon merolae DNA, chromosome 12, compl... 50 0.13 1
(AL161495) Arabidopsis thaliana DNA chromosome 4, contig fra... 50 0.13 1
(AL161494) Arabidopsis thaliana DNA chromosome 4, contig fra... 50 0.13 1
(AC002330) Arabidopsis thaliana BAC T10P11 from chromosome I... 50 0.13 1
(CS477037) Sequence 236 from Patent WO2006133931. 50 0.13 1
(CS458703) Sequence 236 from Patent EP1734118. 50 0.13 1
(X55902) D. melanogaster mRNA for no-on transient A gene cod... 50 0.13 1
(U51084) Drosophila paulistorum Orinocan period protein (per... 50 0.13 1
(U51081) Drosophila paulistorum Andean-Brazilian period prot... 50 0.13 1
(M33496) D.melanogaster no-on-transient A gene product, comp... 50 0.13 1
(AY119651) Drosophila melanogaster RE58280 full insert cDNA. 50 0.13 1
(AE014298) Drosophila melanogaster chromosome X, complete se... 50 0.13 1
(AC010920) Drosophila melanogaster, chromosome X, region 14C... 50 0.13 1
(AC010846) Drosophila melanogaster clone BACR13G13, complete... 50 0.13 1
(AC211859) Homo sapiens FOSMID clone ABC12-46343000P1 from c... 50 0.13 1
(AC162694) Mus musculus chromosome 5 clone RP24-214G12 map 5... 50 0.13 1
(AC142008) Rattus norvegicus clone CH230-302O15, *** SEQUENC... 50 0.13 1
(AC141149) Rattus norvegicus clone CH230-115B17, WORKING DRA... 50 0.13 1
(AC141143) Rattus norvegicus clone CH230-143C14, WORKING DRA... 50 0.13 1
(AC126498) Rattus norvegicus clone CH230-122E3, *** SEQUENCI... 50 0.13 1
(AC123084) Rattus norvegicus clone CH230-10K24, WORKING DRAF... 50 0.13 1
(AC112296) Rattus norvegicus clone CH230-45B5, *** SEQUENCIN... 50 0.13 1
(AC111232) Rattus norvegicus clone CH230-95D3, WORKING DRAFT... 50 0.13 1
(AC108997) Rattus norvegicus clone CH230-271B21, WORKING DRA... 50 0.13 1
(AC106295) Rattus norvegicus clone CH230-77J18, WORKING DRAF... 50 0.13 1
(AC098199) Rattus norvegicus clone CH230-112F8, *** SEQUENCI... 50 0.13 1
(CT005265) Leishmania major chromosome 26 strain Friedlin, c... 50 0.13 1
(AC213696) Pongo abelii chromosome UNKNOWN clone CH276-496C2... 50 0.13 1
(AC213635) Zea mays chromosome 2 clone CH201-460D16; ZMMBBc0... 50 0.13 1
(AC201451) Strongylocentrotus purpuratus clone R3-3031E2, WO... 50 0.13 1
(AC181309) Strongylocentrotus purpuratus clone R3-4017H24, W... 50 0.13 1
(AC180878) Strongylocentrotus purpuratus clone R3-3067P10, W... 50 0.13 1
(AC178972) Strongylocentrotus purpuratus clone R3-3122A17, W... 50 0.13 1
(AC177241) Strongylocentrotus purpuratus clone R3-42F6, WORK... 50 0.13 1
(AC169997) Macaca mulatta clone CH250-141E20, WORKING DRAFT ... 50 0.13 1
(AC016020) Drosophila melanogaster strain y chromosome X clo... 50 0.13 1
(AC014941) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 50 0.13 1
(AZ032968) RPCI-23-350F23.TJ RPCI-23 Mus musculus genomic cl... 50 0.13 1
(FI432709) CH322-166I24.x CHORI-322 Drosophila melanogaster ... 50 0.13 1
(DW250910) Cm_mx1_40b06_SP6 Green Shore Crab Multiple Tissue... 50 0.13 1
(DV467193) Cm_mx0_82h03_SP6 Green Shore Crab Multiple Tissue... 50 0.13 1
(DV467004) Cm_mx0_80f10_SP6 Green Shore Crab Multiple Tissue... 50 0.13 1
(DV466880) Cm_mx0_79a08_SP6 Green Shore Crab Multiple Tissue... 50 0.13 1
(DV112119) Cm_mx0_77e06_SP6 Green Shore Crab Multiple Tissue... 50 0.13 1
(AU090691) Paralichthys olivaceus cDNA, clone: JFConA44F. 50 0.13 1
(CV526804) CS_GIL_19B11_SP6 Blue crab gill, normalized Calli... 50 0.13 1
(CK659799) LP17816.5prime LP Drosophila melanogaster larval-... 50 0.13 1
(BP944476) Bruguiera gymnorhiza mRNA, clone: Bg03-10_G13, 5'... 50 0.13 1
(AA735358) LD21176.5prime LD Drosophila melanogaster embryo ... 50 0.13 1
(GE805545) EST_scau_evk_896127 scauevk mixed_tissue Sebastes... 50 0.13 1
(FG245834) CBYB3916.b1 CBYB Cercospora zeae-maydis cercospor... 50 0.13 1
(FE441165) CAOP9738.rev CAOP Selaginella moellendorffii mixe... 50 0.13 1
(FD720402) CAAA4560.rev CAAA Petromyzon marinus Petromyzon m... 50 0.13 1
(AA440710) LD15575.5prime LD Drosophila melanogaster embryo ... 50 0.13 1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 38 0.14 10
(FH858983) OSB_178009xi24f1.ab1 OSB_178 Nicotiana tabacum ge... 34 0.14 3
(AC176748) Strongylocentrotus purpuratus clone R3-3097G9, WO... 46 0.15 5
(CU210938) Mouse DNA sequence from clone DN-418I23 on chromo... 48 0.23 2
(AC176021) Strongylocentrotus purpuratus clone R3-3024M1, WO... 48 0.25 3
(AC125895) Rattus norvegicus clone CH230-297M1, WORKING DRAF... 46 0.28 2
(AC141729) Apis mellifera clone CH224-57G1, WORKING DRAFT SE... 34 0.29 2
(AC188543) Canis familiaris chromosome 26, clone XX-397I18, ... 36 0.29 2
(AC184810) Canis familiaris chromosome 26, clone XX-93E11, c... 36 0.29 2
(AC141755) Apis mellifera clone CH224-60D21, WORKING DRAFT S... 34 0.29 2
(AC141660) Apis mellifera clone CH224-54J20, WORKING DRAFT S... 34 0.29 2
(AC180737) Strongylocentrotus purpuratus clone R3-3081K24, W... 46 0.30 4
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 36 0.31 8
(AC128894) Rattus norvegicus clone CH230-188C7, *** SEQUENCI... 42 0.31 2
(DH463453) Monosiga ovata DNA, fosmid clone: MOF-003H03, gen... 46 0.32 2
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6... 34 0.34 6
(AC130853) Rattus norvegicus clone CH230-75K19, *** SEQUENCI... 40 0.34 2
(AC129873) Rattus norvegicus clone CH230-158I15, WORKING DRA... 40 0.34 2
(AC096060) Rattus norvegicus clone CH230-42N9, *** SEQUENCIN... 42 0.37 2
(CE783184) tigr-gss-dog-17000330780166 Dog Library Canis lup... 36 0.38 2
(AC100521) Mus musculus clone RP23-145N19, LOW-PASS SEQUENCE... 42 0.43 2
(AC131891) Atelerix albiventris clone LB4-253J19, WORKING DR... 38 0.46 5
(BV046195) S212P6339FG8.T0 CZECHII/Ei Mus musculus STS genom... 48 0.51 1
(AL844551) Mouse DNA sequence from clone RP23-117M21 on chro... 48 0.51 1
(AL670399) Mouse DNA sequence from clone RP23-263M10 on chro... 48 0.51 1
(AC182458) Mus musculus BAC clone RP23-14N12 from chromosome... 48 0.51 1
(AC169673) Mus musculus chromosome 1, clone RP24-188K18, com... 48 0.51 1
(AC154294) Mus musculus BAC clone RP23-431B18 from 16, compl... 48 0.51 1
(AC153015) Mus musculus BAC clone RP23-200I3 from chromosome... 48 0.51 1
(AC152983) Mus musculus 10 BAC RP23-17L11 (Roswell Park Canc... 48 0.51 1
(AC137692) Mus musculus BAC clone RP24-323P9 from 13, comple... 48 0.51 1
(AC134848) Mus musculus BAC clone RP24-196B3 from chromosome... 48 0.51 1
(AC125234) Mus musculus BAC clone RP23-14K16 from 13, comple... 48 0.51 1
(AC122205) Mus musculus BAC clone RP23-76C13 from chromosome... 48 0.51 1
(AC101848) Mus musculus chromosome 1, clone RP23-267J24, com... 48 0.51 1
(AC090432) Mus musculus strain C57BL6/J chromosome 5 clone R... 48 0.51 1
(AP009756) Lotus japonicus genomic DNA, clone: LjT38B21, TM1... 48 0.51 1
(AC147481) Medicago truncatula chromosome 2 clone mth2-138b1... 48 0.51 1
(CS788875) Sequence 131 from Patent WO2005031001. 48 0.51 1
(AC156160) Monodelphis domestica, clone XX-23H4, complete se... 48 0.51 1
(EU208426) Armigeres subalbatus ASAP ID ACN-0185257 question... 48 0.51 1
(AF036170) Dictyostelium discoideum homeobox-containing prot... 48 0.51 1
(AE014296) Drosophila melanogaster chromosome 3L, complete s... 48 0.51 1
(AC010045) Drosophila melanogaster 3L BAC RP98-17C17 (Roswel... 48 0.51 1
(AL606807) Human DNA sequence from clone RP11-316P17 on chro... 48 0.51 1
(AL158800) Human chromosome 14 DNA sequence BAC R-359N5 of l... 48 0.51 1
(AL121832) Human DNA sequence from clone RP5-908M14 on chrom... 48 0.51 1
(AC130686) Homo sapiens chromosome 17, clone RP13-415G19, co... 48 0.51 1
(AC156406) Bos taurus clone CH240-58N7, WORKING DRAFT SEQUEN... 48 0.51 1
(AC151704) Gallus gallus clone WAG-85C19, WORKING DRAFT SEQU... 48 0.51 1
(AC147001) Medicago truncatula clone mth2-128a17, WORKING DR... 48 0.51 1
(AC135031) Rattus norvegicus clone CH230-257H4, WORKING DRAF... 48 0.51 1
(AC133834) Rattus norvegicus clone CH230-74M15, *** SEQUENCI... 48 0.51 1
(AC132762) Rattus norvegicus clone CH230-310C19, WORKING DRA... 48 0.51 1
(AC129830) Rattus norvegicus clone CH230-116B18, WORKING DRA... 48 0.51 1
(AC124869) Rattus norvegicus clone CH230-8B6, WORKING DRAFT ... 48 0.51 1
(AC120593) Rattus norvegicus clone CH230-300L19, WORKING DRA... 48 0.51 1
(AC120580) Rattus norvegicus clone CH230-443M21, *** SEQUENC... 48 0.51 1
(AC119021) Rattus norvegicus clone CH230-244E11, WORKING DRA... 48 0.51 1
(AC112815) Rattus norvegicus clone CH230-354O9, *** SEQUENCI... 48 0.51 1
(AC112814) Rattus norvegicus clone CH230-353O18, *** SEQUENC... 48 0.51 1
(AC111461) Rattus norvegicus clone CH230-213C21, WORKING DRA... 48 0.51 1
(AC097555) Rattus norvegicus clone CH230-214G8, WORKING DRAF... 48 0.51 1
(AC097398) Rattus norvegicus clone CH230-26K16, *** SEQUENCI... 48 0.51 1
(AC095741) Rattus norvegicus clone CH230-1G23, *** SEQUENCIN... 48 0.51 1
(AC095355) Rattus norvegicus clone CH230-1F23, *** SEQUENCIN... 48 0.51 1
(AC094422) Rattus norvegicus clone CH230-3K14, *** SEQUENCIN... 48 0.51 1
(CU468554) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.51 1
(BX572642) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 48 0.51 1
(AC230960) Bos taurus clone CH240-494N7, WORKING DRAFT SEQUE... 48 0.51 1
(AC207536) Zea mays chromosome 9 clone ZMMBBb-491I5; ZMMBBb0... 48 0.51 1
(AC201524) Strongylocentrotus purpuratus clone R3-3090A18, W... 48 0.51 1
(AC180557) Strongylocentrotus purpuratus clone R3-3098D21, W... 48 0.51 1
(AC179831) Strongylocentrotus purpuratus clone R3-1012E24, W... 48 0.51 1
(AC179324) Strongylocentrotus purpuratus clone R3-1102N7, WO... 48 0.51 1
(AC179168) Strongylocentrotus purpuratus clone R3-4016G13, W... 48 0.51 1
(AC178981) Strongylocentrotus purpuratus clone R3-3122G2, WO... 48 0.51 1
(AC176960) Strongylocentrotus purpuratus clone R3-1103I22, W... 48 0.51 1
(AC166071) Monodelphis domestica clone XX-2478B3, *** SEQUEN... 48 0.51 1
(AC165453) Bos taurus clone CH240-321L12, WORKING DRAFT SEQU... 48 0.51 1
(AC165434) Mus musculus chromosome 1 clone RP23-262C15 map 1... 48 0.51 1
(AY439700) Armigeres subalbatus ASAP ID: 44103 unknown mRNA ... 48 0.51 1
(AZ211711) SP_0157_B2_C02_T7A Strongylocentrotus purpuratus,... 48 0.51 1
(EI895945) VUH1-90F5TV VUUBBa (VUH1) Vigna unguiculata genom... 48 0.51 1
(DU125637) KBrH099D18R Brassica rapa BAC library KBrH Brassi... 48 0.51 1
(AL143221) Anopheles gambiae GSS SP6 end of clone 06O10 of N... 48 0.51 1
(CW934197) EDCCM95TF A. castellanii, 6-8 kb library from tot... 48 0.51 1
(CW373124) fsbb001f049f12k0 Sorghum methylation filtered lib... 48 0.51 1
(CU050245) Equus caballus GSS, BAC clone CH241-150J2, SP6 en... 48 0.51 1
(CL715967) OR_BBa0042E21.r OR_BBa Oryza nivara genomic clone... 48 0.51 1
(AG401650) Mus musculus molossinus DNA, clone:MSMg01-236F24.... 48 0.51 1
(EE628716) CHEL11304.b1_P17.ab1 CHE(LMS) serpentine sunflowe... 48 0.51 1
(DY975023) CLSM8710.b1_K18.ab1 CLS(LMS) lettuce sativa Lactu... 48 0.51 1
(DW585053) Cm_mx1_55d12_SP6 Green Shore Crab Multiple Tissue... 48 0.51 1
(DW138348) CLSY5754.b1_D24.ab1 CLS(XYZ) lettuce sativa Lactu... 48 0.51 1
(DW134863) CLSY2369.b1_A17.ab1 CLS(XYZ) lettuce sativa Lactu... 48 0.51 1
(DT748098) EST1181947 Aquilegia cDNA library Aquilegia formo... 48 0.51 1
(DN240179) MUC4LC1015_E03_.b_019. Musa acuminata leaves COLD... 48 0.51 1
(AU034181) Dictyostelium discoideum slug cDNA, clone SLC229. 48 0.51 1
(CF448152) EST684497 normalized cDNA library of onion Allium... 48 0.51 1
(BU009434) QGJ10H08.yg.ab1 QG_EFGHJ lettuce serriola Lactuca... 48 0.51 1
(BM629387) 17000668639544 A.Gam.ad.cDNA1 Anopheles gambiae c... 48 0.51 1
(FM976267) Glossina morsitans morsitans EST, clone GMsg127f0... 48 0.51 1
(FK715525) pl_066-D11 Ilyanassa (snail) 0-48h Ilyanassa obso... 48 0.51 1
(FK713838) pl_078-D8 Ilyanassa (snail) 0-48h Ilyanassa obsol... 48 0.51 1
(FG248630) CBYB915.b1 CBYB Cercospora zeae-maydis cercospori... 48 0.51 1
(FG248307) CBYB691.g1 CBYB Cercospora zeae-maydis cercospori... 48 0.51 1
(FG247915) CBYB5259.g2 CBYB Cercospora zeae-maydis cercospor... 48 0.51 1
(FG247816) CBYB5196.g2 CBYB Cercospora zeae-maydis cercospor... 48 0.51 1
(FG247330) CBYB4896.g1 CBYB Cercospora zeae-maydis cercospor... 48 0.51 1
(FG246991) CBYB4673.g1 CBYB Cercospora zeae-maydis cercospor... 48 0.51 1
(FG245498) CBYB3646.g1 CBYB Cercospora zeae-maydis cercospor... 48 0.51 1
(FG244625) CBYB3015.g1 CBYB Cercospora zeae-maydis cercospor... 48 0.51 1
(FF552356) MOPFM48TF MOP Vigna unguiculata cDNA 5', mRNA seq... 48 0.51 1
(FF542401) MOPCQ69TF MOP Vigna unguiculata cDNA 5', mRNA seq... 48 0.51 1
(FE512941) CAOU8190.rev CAOU Selaginella moellendorffii mixe... 48 0.51 1
(FE505694) CAOU13547.fwd CAOU Selaginella moellendorffii mix... 48 0.51 1
(FE487595) CAOT2461.rev CAOT Selaginella moellendorffii mixe... 48 0.51 1
(FE474549) CAOS5016.rev CAOS Selaginella moellendorffii mixe... 48 0.51 1
(FE472208) CAOS3870.rev CAOS Selaginella moellendorffii mixe... 48 0.51 1
(FE453175) CAOS16784.rev CAOS Selaginella moellendorffii mix... 48 0.51 1
(FE446086) CAOS12638.rev CAOS Selaginella moellendorffii mix... 48 0.51 1
(FE436172) CAOP6770.rev CAOP Selaginella moellendorffii mixe... 48 0.51 1
(FC577742) CAXP13021.fwd CAXP Lottia gigantea from head, foo... 48 0.51 1
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 48 0.51 1
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 48 0.51 1
(AC181266) Strongylocentrotus purpuratus clone R3-4012L23, W... 40 0.55 4
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 38 0.59 8
(AC178118) Strongylocentrotus purpuratus clone R3-3074I12, W... 46 0.65 5
(AC178260) Strongylocentrotus purpuratus clone R3-3087P15, W... 46 0.73 2
(AC108420) Mus musculus chromosome 7, clone RP23-38E14, comp... 42 0.74 2
(AC114904) Mus musculus chromosome 1, clone RP24-121J22, com... 46 0.77 3
(CQ869876) Sequence 297 from Patent WO2004074320. 42 0.79 2
(AC176734) Strongylocentrotus purpuratus clone R3-3096O20, W... 44 0.81 2
(DD010735) Diagnosis of known genetic Parameters within the ... 36 0.87 2
(AC176403) Strongylocentrotus purpuratus clone R3-3044J13, W... 40 0.89 4
(AC181866) Strongylocentrotus purpuratus clone R3-1019N19, W... 40 0.94 3
(AX344560) Sequence 11 from Patent WO0200932. 36 1.0 2
(AC114113) Rattus norvegicus clone CH230-186O3, WORKING DRAF... 46 1.0 2
(AC179910) Strongylocentrotus purpuratus clone R3-1003I18, W... 34 1.0 2
(AC121311) Mus musculus chromosome 3, clone RP24-317L5, comp... 34 1.0 2
(AC112456) Rattus norvegicus clone CH230-110N23, *** SEQUENC... 46 1.0 2
(CT010483) Mouse DNA sequence from clone RP23-281L8 on chrom... 36 1.0 2
(AC117803) Mus musculus chromosome 17, clone RP24-562I11, co... 36 1.1 2
(AC090111) Homo sapiens chromosome 21 clone unknown, complet... 36 1.1 2
(AC026776) Homo sapiens chromosome 21 clone CTC-304G18, comp... 36 1.1 2
(AC115530) Rattus norvegicus strain Brown Norway clone RP31-... 42 1.1 2
(AC201046) Strongylocentrotus purpuratus clone R3-12M21, WOR... 46 1.1 2
(DY985018) CLSS8309.b1_I14.ab1 CLS(LMS) lettuce sativa Lactu... 44 1.2 2
(AC131618) Rattus norvegicus clone CH230-336D15, *** SEQUENC... 42 1.3 4
(AC103543) Rattus norvegicus clone CH230-85B1, *** SEQUENCIN... 40 1.3 2
(DY977665) CLSS11444.b1_H06.ab1 CLS(LMS) lettuce sativa Lact... 44 1.3 2
(DW070649) CLLZ2021.b1_J01.ab1 CLL(XYZ) lettuce saligna Lact... 44 1.4 2
(AC098760) Rattus norvegicus clone CH230-170A6, WORKING DRAF... 40 1.4 3
(EB229468) PEG003-C-204833-501 Normalized Pedal-Pleural Gang... 34 1.4 2
(AC136032) Rattus norvegicus clone CH230-47F8, *** SEQUENCIN... 40 1.5 4
(DY981848) CLSS3870.b1_K07.ab1 CLS(LMS) lettuce sativa Lactu... 44 1.5 2
(AC175847) Strongylocentrotus purpuratus clone R3-3038M6, WO... 36 1.5 5
(EV409718) ALB_18L14_F AFAa_Sm Anopheles albimanus cDNA clon... 40 1.6 2
(AC112741) Rattus norvegicus clone CH230-81J4, *** SEQUENCIN... 44 1.7 3
(AC152969) Oryza sativa Japonica Group chromosome 5 clone OS... 42 1.7 3
(AC181911) Strongylocentrotus purpuratus clone R3-1011P20, W... 40 1.8 3
(AL627325) Zebrafish DNA sequence from clone RP71-1P14 in li... 46 2.0 1
(G81911) S208P6055RC10.T0 129S1/SvImJ Mus musculus STS genom... 46 2.0 1
(BV060127) S209P6488RH9.T0 C3H/HeJ Mus musculus STS genomic,... 46 2.0 1
(CT571272) Mouse DNA sequence from clone RP23-431G22 on chro... 46 2.0 1
(CT485788) Mouse DNA sequence from clone RP23-421B5 on chrom... 46 2.0 1
(AL928871) Mouse DNA sequence from clone RP23-350F2 on chrom... 46 2.0 1
(AL845297) Mouse DNA sequence from clone RP23-207P16 on chro... 46 2.0 1
(AL772402) Mouse DNA sequence from clone RP23-65J9 on chromo... 46 2.0 1
(AL645740) Mouse DNA sequence from clone RP23-411H13 on chro... 46 2.0 1
(AC164422) Mus musculus chromosome 19, clone RP23-407G6, com... 46 2.0 1
(AC160090) Mus musculus 6 BAC RP23-322E20 (Roswell Park Canc... 46 2.0 1
(AC157578) Mus musculus chromosome 3, clone RP24-179O3, comp... 46 2.0 1
(AC154689) Mus musculus BAC clone RP24-329P8 from chromosome... 46 2.0 1
(AC154656) Mus musculus BAC clone RP24-268M5 from chromosome... 46 2.0 1
(AC154004) Mus musculus 6 BAC RP24-169F24 (Roswell Park Canc... 46 2.0 1
(AC144908) Mus musculus chromosome 5, clone RP23-102O19, com... 46 2.0 1
(AC141898) Mus musculus BAC clone RP23-155I18 from chromosom... 46 2.0 1
(AC135720) Mus musculus chromosome 15, clone RP24-298F20, co... 46 2.0 1
(AC133906) Mus musculus chromosome 14, clone RP24-230P12, co... 46 2.0 1
(AC131740) Mus musculus BAC clone RP23-85D12 from chromosome... 46 2.0 1
(AC131101) Mus musculus BAC clone RP23-60O18 from 6, complet... 46 2.0 1
(AC127275) Mus musculus BAC clone RP24-207I8 from chromosome... 46 2.0 1
(AC125106) Mus musculus BAC clone RP24-221A9 from chromosome... 46 2.0 1
(AC124549) Mus musculus BAC clone RP23-284E24 from 13, compl... 46 2.0 1
(AC124394) Mus musculus BAC clone RP24-335M3 from chromosome... 46 2.0 1
(AC122738) Mus musculus chromosome 1, clone RP23-68E17, comp... 46 2.0 1
(AC122117) Mus musculus chromosome 18, clone RP23-61O22, com... 46 2.0 1
(AC120922) Rattus norvegicus 9 BAC CH230-104J1 (Children's H... 46 2.0 1
(AC120405) Mus musculus chromosome 1, clone RP24-409F22, com... 46 2.0 1
(AC120396) Mus musculus chromosome 1, clone RP24-331B5, comp... 46 2.0 1
(AC120006) Mus musculus chromosome 19, clone RP24-176M2, com... 46 2.0 1
(AC119977) Mus musculus chromosome 5, clone RP24-486F14, com... 46 2.0 1
(AC118245) Mus musculus chromosome 6, clone RP23-292C5, comp... 46 2.0 1
(AC116507) Mus musculus chromosome 19, clone RP24-309C17, co... 46 2.0 1
(AC115949) Mus musculus chromosome 3, clone RP24-568B16, com... 46 2.0 1
(AC115940) Mus musculus chromosome 5, clone RP24-553D12, com... 46 2.0 1
(AC115795) Mus musculus chromosome 5, clone RP23-400O10, com... 46 2.0 1
(AC113720) Rattus norvegicus 1 BAC CH230-117B1 (Children's H... 46 2.0 1
(AC104932) Mus musculus chromosome 3, clone RP24-337A16, com... 46 2.0 1
(AC102104) Mus musculus chromosome 15, clone RP23-85P16, com... 46 2.0 1
(AC095563) Rattus norvegicus 9 BAC CH230-7G11 (Children's Ho... 46 2.0 1
(AC068907) Mus musculus strain C57BL/6J clone rp23-347f7 map... 46 2.0 1
(AP005268) Pan troglodytes DNA, chromosome 7 clone:PTB-029M21. 46 2.0 1
(AC201844) Pongo abelii BAC clone CH276-112O13 from chromoso... 46 2.0 1
(AC198628) Pan troglodytes BAC clone CH251-341B4 from chromo... 46 2.0 1
(AC158541) Pan troglodytes BAC clone CH251-19F24 from chromo... 46 2.0 1
(AC146849) Pan troglodytes BAC clone RP43-163I11 from chromo... 46 2.0 1
(CU638743) Podospora anserina genomic DNA chromosome 3, supe... 46 2.0 1
(AP009847) Lotus japonicus genomic DNA, clone: LjT02E24, TM1... 46 2.0 1
(AP008215) Oryza sativa (japonica cultivar-group) genomic DN... 46 2.0 1
(AP005092) Oryza sativa Japonica Group genomic DNA, chromoso... 46 2.0 1
(FB596591) Sequence 12314 from Patent WO2004081186. 46 2.0 1
(EA689584) Sequence 68463 from patent US 7365185. 46 2.0 1
(EA683078) Sequence 61957 from patent US 7365185. 46 2.0 1
(CS493811) Sequence 689 from Patent WO2006130156. 46 2.0 1
(A45360) Sequence 30 from Patent WO9517522. 46 2.0 1
(GC699882) Sequence 15127 from patent US 6812339. 46 2.0 1
(AR545327) Sequence 458 from patent US 6747137. 46 2.0 1
(AR061165) Sequence 30 from patent US 5843647. 46 2.0 1
(AY033634) Sus scrofa Fas ligand (FasL) mRNA, complete cds. 46 2.0 1
(AC187012) Canis Familiaris chromosome 23, clone XX-155L5, c... 46 2.0 1
(AM494942) Leishmania braziliensis chromosome 5. 46 2.0 1
(AC199241) Caenorhabditis elegans cosmid 2RSSE, complete seq... 46 2.0 1
(X73215) H.sapiens simple repeat region (wg0f5). 46 2.0 1
(AL137127) Human DNA sequence from clone RP5-1126H10 on chro... 46 2.0 1
(AC099344) Homo sapiens BAC clone RP11-427E2 from 2, complet... 46 2.0 1
(AC095044) Homo sapiens BAC clone RP11-132B16 from 7, comple... 46 2.0 1
(AC003992) Homo sapiens BAC clone CTA-250D13 from 7, complet... 46 2.0 1
(AB009777) Homo sapiens gene for osteonidogen, promoter region. 46 2.0 1
(AC162529) Pan troglodytes chromosome UNKNOWN clone CH251-17... 46 2.0 1
(AC156670) Bos taurus clone CH240-60K24, WORKING DRAFT SEQUE... 46 2.0 1
(AC147696) Otolemur garnettii clone CH256-474F16, WORKING DR... 46 2.0 1
(AC147490) Otolemur garnettii clone CH256-330F10, WORKING DR... 46 2.0 1
(AC141665) Apis mellifera clone CH224-54J16, WORKING DRAFT S... 46 2.0 1
(AC141164) Rattus norvegicus clone CH230-479M21, WORKING DRA... 46 2.0 1
(AC139606) Rattus norvegicus clone CH230-388D19, WORKING DRA... 46 2.0 1
(AC137330) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 46 2.0 1
(AC133980) Rattus norvegicus clone CH230-169M13, *** SEQUENC... 46 2.0 1
(AC130758) Rattus norvegicus clone CH230-236H20, *** SEQUENC... 46 2.0 1
(AC130062) Rattus norvegicus clone CH230-286L7, WORKING DRAF... 46 2.0 1
(AC129610) Rattus norvegicus clone CH230-1G13, WORKING DRAFT... 46 2.0 1
(AC128562) Rattus norvegicus clone CH230-425G14, *** SEQUENC... 46 2.0 1
(AC127923) Rattus norvegicus clone CH230-188L13, *** SEQUENC... 46 2.0 1
(AC126466) Rattus norvegicus clone CH230-34O4, *** SEQUENCIN... 46 2.0 1
(AC126134) Rattus norvegicus clone CH230-23O13, WORKING DRAF... 46 2.0 1
(AC125950) Rattus norvegicus clone CH230-11I8, WORKING DRAFT... 46 2.0 1
(AC125569) Rattus norvegicus clone CH230-8E24, *** SEQUENCIN... 46 2.0 1
(AC121423) Rattus norvegicus clone CH230-127L1, *** SEQUENCI... 46 2.0 1
(AC120904) Rattus norvegicus clone CH230-462O8, *** SEQUENCI... 46 2.0 1
(AC120747) Rattus norvegicus clone CH230-25J5, *** SEQUENCIN... 46 2.0 1
(AC119079) Rattus norvegicus clone CH230-146C16, *** SEQUENC... 46 2.0 1
(AC118913) Rattus norvegicus clone CH230-70P13, *** SEQUENCI... 46 2.0 1
(AC118177) Rattus norvegicus clone CH230-487F18, WORKING DRA... 46 2.0 1
(AC117126) Rattus norvegicus clone CH230-204B9, *** SEQUENCI... 46 2.0 1
(AC115397) Rattus norvegicus clone CH230-253G20, WORKING DRA... 46 2.0 1
(AC114450) Rattus norvegicus clone CH230-126H22, WORKING DRA... 46 2.0 1
(AC112371) Rattus norvegicus clone CH230-262I13, WORKING DRA... 46 2.0 1
(AC111053) Mus musculus clone RP24-464N22, WORKING DRAFT SEQ... 46 2.0 1
(AC108606) Rattus norvegicus clone CH230-272B12, WORKING DRA... 46 2.0 1
(AC107354) Rattus norvegicus clone CH230-48L1, *** SEQUENCIN... 46 2.0 1
(AC103461) Rattus norvegicus clone CH230-47G11, WORKING DRAF... 46 2.0 1
(AC103286) Rattus norvegicus clone CH230-123H2, WORKING DRAF... 46 2.0 1
(AC101290) Mus musculus clone RP23-103D10, LOW-PASS SEQUENCE... 46 2.0 1
(AC099197) Rattus norvegicus clone CH230-193E1, WORKING DRAF... 46 2.0 1
(AC098076) Rattus norvegicus clone CH230-122N13, WORKING DRA... 46 2.0 1
(AC097075) Rattus norvegicus clone CH230-153N20, *** SEQUENC... 46 2.0 1
(AC097017) Rattus norvegicus clone CH230-2L17, *** SEQUENCIN... 46 2.0 1
(AC096491) Rattus norvegicus clone CH230-21H6, *** SEQUENCIN... 46 2.0 1
(AC096288) Rattus norvegicus clone CH230-38G14, *** SEQUENCI... 46 2.0 1
(AC095837) Rattus norvegicus clone CH230-10E13, *** SEQUENCI... 46 2.0 1
(AC095686) Rattus norvegicus clone CH230-9C18, WORKING DRAFT... 46 2.0 1
(AC095670) Rattus norvegicus clone CH230-8O20, WORKING DRAFT... 46 2.0 1
(AC095666) Rattus norvegicus clone CH230-8O14, WORKING DRAFT... 46 2.0 1
(AC094545) Rattus norvegicus clone CH230-4I20, *** SEQUENCIN... 46 2.0 1
(CU638834) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.0 1
(AC094199) Rattus norvegicus clone CH230-2M2, *** SEQUENCING... 46 2.0 1
(AC094175) Rattus norvegicus clone CH230-2M14, *** SEQUENCIN... 46 2.0 1
(AC093994) Rattus norvegicus clone CH230-48H17, *** SEQUENCI... 46 2.0 1
(AC079458) Homo sapiens chromosome 12q clone RP11-478P24, **... 46 2.0 1
(AC073704) Mus musculus clone RP23-175I12, WORKING DRAFT SEQ... 46 2.0 1
(CT005248) Leishmania major chromosome 9 strain Friedlin, co... 46 2.0 1
(BX469927) Human DNA sequence *** SEQUENCING CANCELLED *** f... 46 2.0 1
(AC223625) Bos taurus clone CH240-463P4, WORKING DRAFT SEQUE... 46 2.0 1
(AC205726) Zea mays chromosome 4 clone CH201-153I17; ZMMBBc0... 46 2.0 1
(AC201100) Strongylocentrotus purpuratus clone R3-13H3, WORK... 46 2.0 1
(AC181542) Strongylocentrotus purpuratus clone R3-1109O3, WO... 46 2.0 1
(AC181181) Strongylocentrotus purpuratus clone R3-3040C10, W... 46 2.0 1
(AC181074) Strongylocentrotus purpuratus clone R3-3047N01, W... 46 2.0 1
(AC181040) Strongylocentrotus purpuratus clone R3-3029B16, W... 46 2.0 1
(AC180935) Strongylocentrotus purpuratus clone R3-3061J17, W... 46 2.0 1
(AC179667) Strongylocentrotus purpuratus clone R3-1024B17, W... 46 2.0 1
(AC179537) Strongylocentrotus purpuratus clone R3-6J22, WORK... 46 2.0 1
(AC179082) Strongylocentrotus purpuratus clone R3-4009I11, W... 46 2.0 1
(AC178897) Strongylocentrotus purpuratus clone R3-3114J14, W... 46 2.0 1
(AC178850) Strongylocentrotus purpuratus clone R3-26H13, WOR... 46 2.0 1
(AC178566) Strongylocentrotus purpuratus clone R3-3025N02, W... 46 2.0 1
(AC178113) Strongylocentrotus purpuratus clone R3-1117C3, WO... 46 2.0 1
(AC177493) Strongylocentrotus purpuratus clone R3-1027N13, W... 46 2.0 1
(AC175921) Strongylocentrotus purpuratus clone R3-12M1, WORK... 46 2.0 1
(AC173350) Strongylocentrotus purpuratus clone R3-3047I2, WO... 46 2.0 1
(AC169273) Bos taurus clone CH240-246J8, WORKING DRAFT SEQUE... 46 2.0 1
(AC166490) Mus musculus chromosome 5 clone RP24-335B10 map 5... 46 2.0 1
(AC165411) Mus musculus chromosome 5 clone RP24-107N7 map 5,... 46 2.0 1
(AC017210) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 46 2.0 1
(DU525779) 1098609894492 CHORI-243 Ovis aries genomic clone ... 46 2.0 1
(DU455301) 1098415822048 CHORI-243 Ovis aries genomic clone ... 46 2.0 1
(AG982918) Hemicentrotus pulcherrimus BAC clone: BUB1-03I06_... 46 2.0 1
(DE281376) Oryzias latipes DNA, clone: ola1-239I16.F, genomi... 46 2.0 1
(DE053365) Oryzias latipes DNA, clone: ola1-023C08.F, genomi... 46 2.0 1
(DE053282) Oryzias latipes DNA, clone: ola1-023A12.F, genomi... 46 2.0 1
(CZ538617) SRAA-aad20g06.b1 Strongyloides ratti whole genome... 46 2.0 1
(CZ292028) cp79b01.f Candida parapsilosis Random Genomic Lib... 46 2.0 1
(AG695248) Macaca fuscata fuscata DNA, clone: MSB2-131C14_F,... 46 2.0 1
(CL530532) trib002xm21.b1 T. reesei HindIII BAC library Hypo... 46 2.0 1
(AG287420) Mus musculus molossinus DNA, clone:MSMg01-061C06.... 46 2.0 1
(EE637772) CHEL7539.b1_E14.ab1 CHE(LMS) serpentine sunflower... 46 2.0 1
(EE636223) CHEL6900.b1_H22.ab1 CHE(LMS) serpentine sunflower... 46 2.0 1
(EE632090) CHEL3336.b1_O18.ab1 CHE(LMS) serpentine sunflower... 46 2.0 1
(EB622649) AGENCOURT_56976817 D. grimshawi EST Drosophila gr... 46 2.0 1
(EB606794) AGENCOURT_56961005 D. grimshawi EST Drosophila gr... 46 2.0 1
(EB550106) AGENCOURT_52965486 D. erecta EST Drosophila erect... 46 2.0 1
(EB525436) 299714 Pigtailed macaque ovary library Macaca nem... 46 2.0 1
(EB055961) StheSEQ15780 Sporotrichum thermophile pBluescript... 46 2.0 1
(DY982780) CLSS510.b1_L07.ab1 CLS(LMS) lettuce sativa Lactuc... 46 2.0 1
(DY960131) CLSM10033.b1_A13.ab1 CLS(LMS) lettuce sativa Lact... 46 2.0 1
(DY937936) CHPX4698.b1_C23.ab1 CHP(XYZ) plains sunflower Hel... 46 2.0 1
(DY937052) CHPX3322.b1_C16.ab1 CHP(XYZ) plains sunflower Hel... 46 2.0 1
(DY935472) CHPX14495.b1_M24.ab1 CHP(XYZ) plains sunflower He... 46 2.0 1
(DY933961) CHPX12338.b1_C13.ab1 CHP(XYZ) plains sunflower He... 46 2.0 1
(DY908986) CHAX3909.b1_I17.ab1 CHA(XYZ) common wild sunflowe... 46 2.0 1
(DY805228) CTOX13368.b1_P06.ab1 CTO(XYZ) dandelion Taraxacum... 46 2.0 1
(DY803282) CTOX11425.b1_B02.ab1 CTO(XYZ) dandelion Taraxacum... 46 2.0 1
(DW172603) CLVZ3686.b1_K10.ab1 CLV(XYZ) lettuce virosa Lactu... 46 2.0 1
(DW126225) CLSX2737.b1_A13.ab1 CLS(XYZ) lettuce sativa Lactu... 46 2.0 1
(DW024906) PMAH-aaa46a12.g1 Lamprey_EST_Olfactory Petromyzon... 46 2.0 1
(DR768402) ILLUMIGEN_MCQ_61396 Katze_MMOV Macaca mulatta cDN... 46 2.0 1
(DR398821) TKN094D09_634498 Taraxacum kok-saghyz root cDNA l... 46 2.0 1
(DR134067) 49221807 Drosophila pseudoobscura embryonic cDNA ... 46 2.0 1
(DR129599) 49089880 Drosophila pseudoobscura embryonic cDNA ... 46 2.0 1
(DC599681) Lotus japonicus mRNA, clone: MR082e03_r, 5' end s... 46 2.0 1
(DB998904) Quercus mongolica subsp. crispula mRNA, clone: Qm... 46 2.0 1
(CO774101) ILLUMIGEN_MCQ_51010 Katze_MMIL Macaca mulatta cDN... 46 2.0 1
(AM328308) Oryzias latipes EST, clone FOE002-P00090-DPE-F_D24. 46 2.0 1
(AM317960) Oryzias latipes EST, clone FOE002-P00060-DPE-F_M01. 46 2.0 1
(CN547221) EST 15210 Ripe Grape Berry LambdaZapII Library Vi... 46 2.0 1
(CB283588) DF0148 Dermatophagoides farinae cDNA library Derm... 46 2.0 1
(CB283485) DF0023 Dermatophagoides farinae cDNA library Derm... 46 2.0 1
(CA287048) SCSBSD2056G10.g SD2 Saccharum officinarum cDNA cl... 46 2.0 1
(C50829) Caenorhabditis elegans cDNA clone yk486h9 : 5' end,... 46 2.0 1
(BW599980) Lotus japonicus cDNA, clone: LjCa-020-BH02, 5' en... 46 2.0 1
(BQ795175) EST 4113 Ripening Grape berries Lambda Zap II Lib... 46 2.0 1
(BQ531988) APEX3_19_A06 pSLR Saccharum officinarum cDNA 5', ... 46 2.0 1
(BM136601) WHE2613_H06_O11ZS Wheat Fusarium graminearum infe... 46 2.0 1
(BJ102930) Caenorhabditis elegans cDNA clone:yk1044c08 : 5' ... 46 2.0 1
(GO036189) LJNBW61TF JCVI-LJ3 Lotus japonicus cDNA 5', mRNA ... 46 2.0 1
(GO023594) LJMCD17TF JCVI-LJ2 Lotus japonicus cDNA 5', mRNA ... 46 2.0 1
(GO021554) LJMAF30TF JCVI-LJ2 Lotus japonicus cDNA 5', mRNA ... 46 2.0 1
(GE507013) CCFT5533.g1_J15.ab1 CCF(STU) sunflower Helianthus... 46 2.0 1
(FE797060) CCAG21188.b1 CCAG Petrolisthes cinctipes heart, g... 46 2.0 1
(FE509645) CAOU15660.fwd CAOU Selaginella moellendorffii mix... 46 2.0 1
(FE472599) CAOS4062.fwd CAOS Selaginella moellendorffii mixe... 46 2.0 1
(EX219825) AsAmIn193B03.b_B03 Plasmodium-infected mosquito m... 46 2.0 1
(CP001037) Nostoc punctiforme PCC 73102, complete genome. 46 2.0 1
(AP005565) Oryza sativa Japonica Group genomic DNA, chromoso... 38 2.1 4
(AK016922) Mus musculus adult male testis cDNA, RIKEN full-l... 42 2.4 2
(AC181105) Strongylocentrotus purpuratus clone R3-3042E01, W... 42 2.4 3
(AC179908) Strongylocentrotus purpuratus clone R3-1003I5, WO... 42 2.5 5
(AP010577) Lotus japonicus genomic DNA, chromosome 1, clone:... 44 2.5 3
(AC177127) Strongylocentrotus purpuratus clone R3-4014H6, WO... 42 2.6 2
(AC073405) Oryza sativa Japonica Group chromosome 5 clone P0... 42 2.6 3
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 34 2.6 7
(FD383345) Nad03b_94_H09_C005.g1 Nuphar advena flower bud li... 42 2.7 2
(DH489849) Monosiga ovata DNA, fosmid clone: MOF-049G18, gen... 42 2.8 2
(AP003046) Oryza sativa Japonica Group genomic DNA, chromoso... 44 2.8 2
(AC168614) Strongylocentrotus purpuratus clone R3-3046G18, W... 40 2.8 2
(AP003453) Oryza sativa Japonica Group genomic DNA, chromoso... 40 3.0 2
(AC126961) Rattus norvegicus clone CH230-194B24, *** SEQUENC... 44 3.0 5
(AC181057) Strongylocentrotus purpuratus clone R3-3049I5, WO... 42 3.0 7
(AB252660) Ipomoea purpurea IpIVS gene, exon 1 to 8 sequence... 34 3.2 3
(AL139378) Human DNA sequence from clone RP11-271B5 on chrom... 40 3.2 2
(AC178086) Strongylocentrotus purpuratus clone R3-3062F12, W... 42 3.3 3
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 42 3.4 6
(FM992694) Candida dubliniensis CD36 chromosome 7, complete ... 32 3.4 2
(AC097242) Rattus norvegicus clone CH230-89C24, *** SEQUENCI... 42 3.4 4
(AC200459) Pan troglodytes BAC clone CH251-259D1 from chromo... 44 3.5 4
(AC128850) Rattus norvegicus clone CH230-446K22, *** SEQUENC... 44 3.6 2
(AP010595) Lotus japonicus genomic DNA, chromosome 5, clone:... 38 3.7 5
(DH496923) Monosiga ovata DNA, fosmid clone: MOF-061P18, gen... 42 3.7 2
(AC021737) Homo sapiens chromosome 12 clone RP11-130L11 map ... 40 3.8 4
(DJ441123) Breast Cancer Biomarkers. 34 3.8 2
(CS200174) Sequence 55 from Patent WO2005106044. 34 3.8 2
(AC139574) Mus musculus BAC clone RP23-477I8 from chromosome... 32 3.8 2
(AC179546) Strongylocentrotus purpuratus clone R3-6M2, WORKI... 32 3.8 2
(AC025038) Homo sapiens chromosome 10 clone RP11-443O13, com... 38 3.8 4
(AC009141) Homo sapiens chromosome 16 clone RP11-543G23, com... 42 3.8 2
(CU856035) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 3.8 2
(AC020907) Homo sapiens chromosome 19 clone CTD-2527I21, com... 34 3.8 2
(DJ441124) Breast Cancer Biomarkers. 34 3.9 2
(CS200175) Sequence 56 from Patent WO2005106044. 34 3.9 2
(AC179542) Strongylocentrotus purpuratus clone R3-6L18, WORK... 32 3.9 2
(BX649466) Zebrafish DNA sequence from clone DKEY-31C8 in li... 34 4.0 2
(AC177405) Strongylocentrotus purpuratus clone R3-53M22, WOR... 40 4.0 5
(AC129336) Mus musculus BAC clone RP23-113I7 from chromosome... 42 4.1 2
(AC125687) Rattus norvegicus clone CH230-39G12, WORKING DRAF... 42 4.3 2
(AC146988) Lytechinus variegatus clone BLV-46J3, *** SEQUENC... 42 4.3 5
(AC126519) Rattus norvegicus clone CH230-159N5, WORKING DRAF... 40 4.4 2
(CE606654) tigr-gss-dog-17000327558443 Dog Library Canis lup... 34 4.4 2

>(AF310892) Dictyostelium discoideum citrate synthase (gltA) gene,
partial cds; RacF2 (racF2) gene, complete cds; and
unknown gene.
Length = 5632

Score = 436 bits (220), Expect(4) = 0.0
Identities = 223/224 (99%)
Strand = Plus / Plus


Query: 109 tatggatacaaagattgattatcaaccaactatacaagaagataaagttgttgatataaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3506 tatggatacaaagattgattatcaaccaactatacaagaagataaagttgttgatataaa 3565


Query: 169 atataatattagtagtagcgatgatggtaatgtaatcaatatgagtggtggtggtggtgg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3566 atataatattagtagtagcgatgatggtaatgtaatcaatatgagtggtggtggtggtgg 3625


Query: 229 cggtgatgttggtaatagttgttgtatctctgaagataatcatcaaaaaggaatcattag 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3626 cggtgatgttggtaatagttgttgtatctctgaagataatcatcaaaaaggaatcattag 3685


Query: 289 aaatagtagtagtggtacaattaacaatattttaggtacagatg 332
||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 3686 aaatagtagtagtggtacaattaccaatattttaggtacagatg 3729

Score = 309 bits (156), Expect(4) = 0.0
Identities = 156/156 (100%)
Strand = Plus / Plus


Query: 416 tctacttcaactaatttaccaataaaaacatatattgaatcaccaaaatcaatatcatca 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3813 tctacttcaactaatttaccaataaaaacatatattgaatcaccaaaatcaatatcatca 3872


Query: 476 gactcttcctcagtttcatcatctttgtatgaaccaattgtaaaagaaataaatgaattt 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3873 gactcttcctcagtttcatcatctttgtatgaaccaattgtaaaagaaataaatgaattt 3932


Query: 536 ataaatccgccatccataacatcatctcaaaccatc 571
||||||||||||||||||||||||||||||||||||
Sbjct: 3933 ataaatccgccatccataacatcatctcaaaccatc 3968

Score = 111 bits (56), Expect(4) = 0.0
Identities = 56/56 (100%)
Strand = Plus / Plus


Query: 698 gaagaatcaaatacaataacaaaaatttcaccaacaattagagcagtaacaagatc 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4095 gaagaatcaaatacaataacaaaaatttcaccaacaattagagcagtaacaagatc 4150

Score = 44.1 bits (22), Expect(4) = 0.0
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 754 catcaccattttataattctaa 775
||||||||||||||||||||||
Sbjct: 4150 catcaccattttataattctaa 4171

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 659,955,631
Number of extensions: 46095603
Number of successful extensions: 5533281
Number of sequences better than 10.0: 1328
Length of query: 775
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 751
Effective length of database: 99,340,224,878
Effective search space: 74604508883378
Effective search space used: 74604508883378
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.21
Homology vs Protein
Query= Contig-U03010-1 (Contig-U03010-1Q) /CSM_Contig/Contig-U03010-1Q.Seq.d
(775 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC115584_16(AC115584|pid:none) Dictyostelium discoideum chromoso... 165 2e-39

>AC115584_16(AC115584|pid:none) Dictyostelium discoideum chromosome
2 map complement(3622543-3568102) strain AX4, complete
sequence.
Length = 531

Score = 165 bits (417), Expect = 2e-39
Identities = 105/215 (48%), Positives = 105/215 (48%)
Frame = +2

Query: 110 MDTKIDYQPTIQEDKVVDIKYNISSSDXXXXXXXXXXXXXXXXXXXXXXSEDNHQKGIIR 289
MDTKIDYQPTIQEDKVVDIKYNISSSD SEDNHQKGIIR
Sbjct: 1 MDTKIDYQPTIQEDKVVDIKYNISSSDDGNVINMSGGGGGGDVGNSCCISEDNHQKGIIR 60

Query: 290 NSSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPIKTYIEXXXXX 469
NSSSG LPIKTYIE
Sbjct: 61 NSSSGTINNILGTDDNNNNNNNNNSNNKNSNNNDTTNSTITNSTSTNLPIKTYIESPKSI 120

Query: 470 XXXXXXXXXXLYEPIVKEINEFINPPSITSSQTIINNQEEKDIENKTIVXXXXXXXXXXX 649
LYEPIVKEINEFINPPSITSSQTIINNQEEKDIENKTIV
Sbjct: 121 SSDSSSVSSSLYEPIVKEINEFINPPSITSSQTIINNQEEKDIENKTIVNNNNNNNSLND 180

Query: 650 XXXXXXXXXXXXXXXXXXXXTITKISPTIRAVTRS 754
TITKISPTIRAVTRS
Sbjct: 181 SISSSSSSNSSSNSNNEESNTITKISPTIRAVTRS 215

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 468,056,068
Number of extensions: 4148996
Number of successful extensions: 7578
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7575
Number of HSP's successfully gapped: 2
Length of query: 258
Length of database: 1,051,180,864
Length adjustment: 126
Effective length of query: 132
Effective length of database: 643,374,430
Effective search space: 84925424760
Effective search space used: 84925424760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.46 gvh: 0.16 alm: 0.51 top: 0.53 tms: 0.00 mit: 0.31 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for Contig-U03010-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0