Contig-U15401-1
Contig ID Contig-U15401-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15401-1 (Contig-U15401-1Q) /CSM_Contig/Contig-U15401-1Q.Seq.d
AAACCAGGCACAGATGGTAAAGAATTCATTTATCCATCCTATGTACAAGA
TATTATGGGTGATATATTTTCATTGGGTTTTGGTCCATTCCGTTGGGTTT
GTACCAGTGGCAATCCAAAGGATTTAGAAATCACCGATCGTATCGCCAAA
GAATTAATTGAAAAATTAAGATCTCAACCAGGTGTACCAAAGAATGTTCA
ACAACAATTTAATGATAATCATCTTTGGATTAGTCAAGCAGGTGAACATA
AATTAGTTGTTGGTTCACAAGCCCGTATCCTTTATAGTGATTGTATTGGT
CGTTCAGAATTAGCAGTTGCTTTCAATAAAGCTGTTGCCGATGGTACATT
ATCAGCTCCAGTCGTAATTAGTAGAGATCATCATGATGTCTCTGGTACTG
ATGCACCATGGAGAGAAACTTCAAACATTAAAGATGGTTCCCAATTTTGT
GCTGATATGGCTATTCATAATGTTATTGGTGATTCATTTAGAGGTGCAAC
TTGGGTTGCCATTCATAATGGTGGTGGTACAGGTTTTGGTGAAGCTATCA
ATGGTGGTTTTGGTCTCTATTTATGTGGTAGTAAATTACAAGAAGAAAAA
GCTAGAATGATGTTAAATTGGGATGTTAATAATGGTATTGCTCGTCGTTC
TTGGTCATATAATGATAACGCTGAAAATACAATTAAAAGAGCAATGGAAT
TAGATCCATCTTTAAAAGTTACAATTCCAAATCATACAAGCGATGATTTA
ATTAATTCTTTAAATTTTTAAAAAAAAAACAAAATACNAATAATATAAAT
ATATAAAATTTTTTTCTTTTATTTTTTTTTTTTAAAAATATA

Gap no gap
Contig length 842
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 8369042
End point 8368200
Strand (PLUS/MINUS) MINUS
Number of clones 8
Number of EST 8
Link to clone list U15401
List of clone(s)

est1=VHB638Z,1,742
est2=VFD202Z,22,751
est3=SFG741Z,24,742
est4=VHE110Z,465,842
est5=VHG574Z,524,842
est6=VHO853Z,524,632
est7=VHA404Z,743,842
est8=VHJ573Z,745,842
Translated Amino Acid sequence
KPGTDGKEFIYPSYVQDIMGDIFSLGFGPFRWVCTSGNPKDLEITDRIAKELIEKLRSQP
GVPKNVQQQFNDNHLWISQAGEHKLVVGSQARILYSDCIGRSELAVAFNKAVADGTLSAP
VVISRDHHDVSGTDAPWRETSNIKDGSQFCADMAIHNVIGDSFRGATWVAIHNGGGTGFG
EAINGGFGLYLCGSKLQEEKARMMLNWDVNNGIARRSWSYNDNAENTIKRAMELDPSLKV
TIPNHTSDDLINSLNF*kknkixii*iykifffyffflki


Translated Amino Acid sequence (All Frames)
Frame A:
KPGTDGKEFIYPSYVQDIMGDIFSLGFGPFRWVCTSGNPKDLEITDRIAKELIEKLRSQP
GVPKNVQQQFNDNHLWISQAGEHKLVVGSQARILYSDCIGRSELAVAFNKAVADGTLSAP
VVISRDHHDVSGTDAPWRETSNIKDGSQFCADMAIHNVIGDSFRGATWVAIHNGGGTGFG
EAINGGFGLYLCGSKLQEEKARMMLNWDVNNGIARRSWSYNDNAENTIKRAMELDPSLKV
TIPNHTSDDLINSLNF*kknkixii*iykifffyffflki


Frame B:
nqaqmvknsfihpmykilwviyfhwvlvhsvgfvpvaiqri*kspivspkn*lkn*dlnq
vyqrmfnnnlmiiifglvkqvnin*llvhkpvsfivivlvvqn*qllsikllpmvhyqlq
s*lveiimmslvlmhhgeklqtlkmvpnfvliwlfimllvihlevqlglpfimvvvqvlv
klsmvvlvsiyvvvnykkkkle*c*igmlimvllvvlghimitlkiqlkeqwn*ihl*kl
qfqiiqami*lil*ifkkktkyx*ykyikffsfifff*ky


Frame C:
trhrw*rihlsilctryyg*yifigfwsiplglyqwqskgfrnhrsyrqrin*kikistr
ctkecstti***ssld*ssr*t*iscwftspypl**lywsfrisscfq*sccrwyiisss
rn**rss*clwy*ctmernfkh*rwfpilc*ygys*cyw*fi*rcnlgchs*wwwyrfw*
syqwwfwslfmw**itrrks*ndvklgc**wycssflvi***r*kyn*ksngirsifksy
nsksykr*fn*ffkflkkkqntnnini*nffllffffkni


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15401-1 (Contig-U15401-1Q)
/CSM_Contig/Contig-U15401-1Q.Seq.d
(842 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15401-1 (Contig-U15401-1Q) /CSM_Contig/Conti... 1536 0.0
Contig-U13124-1 (Contig-U13124-1Q) /CSM_Contig/Conti... 121 2e-27
Contig-U11856-1 (Contig-U11856-1Q) /CSM_Contig/Conti... 56 9e-08
Contig-U15471-1 (Contig-U15471-1Q) /CSM_Contig/Conti... 52 1e-06
Contig-U00294-1 (Contig-U00294-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U13024-1 (Contig-U13024-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U08935-1 (Contig-U08935-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U06647-1 (Contig-U06647-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U15188-1 (Contig-U15188-1Q) /CSM_Contig/Conti... 38 0.021
Contig-U15069-1 (Contig-U15069-1Q) /CSM_Contig/Conti... 38 0.021

>Contig-U15401-1 (Contig-U15401-1Q) /CSM_Contig/Contig-U15401-1Q.Seq.d
Length = 842

Score = 1536 bits (775), Expect = 0.0
Identities = 798/808 (98%)
Strand = Plus / Plus


Query: 1 aaaccaggcacagatggtaaagaattcatttatccatcctatgtacaagatattatgggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaccaggcacagatggtaaagaattcatttatccatcctatgtacaagatattatgggt 60


Query: 61 gatatattttcattgggttttggtccattccgttgggtttgtaccagtggcaatccaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatatattttcattgggttttggtccattccgttgggtttgtaccagtggcaatccaaag 120


Query: 121 gatttagaaatcaccgatcgtatcgccaaagaattaattgaaaaattaagatctcaacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gatttagaaatcaccgatcgtatcgccaaagaattaattgaaaaattaagatctcaacca 180


Query: 181 ggtgtaccaaagaatgttcaacaacaatttaatgataatcatctttggattagtcaagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggtgtaccaaagaatgttcaacaacaatttaatgataatcatctttggattagtcaagca 240


Query: 241 ggtgaacataaattagttgttggttcacaagcccgtatcctttatagtgattgtattggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggtgaacataaattagttgttggttcacaagcccgtatcctttatagtgattgtattggt 300


Query: 301 cgttcagaattagcagttgctttcaataaagctgttgccgatggtacattatcagctcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cgttcagaattagcagttgctttcaataaagctgttgccgatggtacattatcagctcca 360


Query: 361 gtcgtaattagtagagatcatcatgatgtctctggtactgatgcaccatggagagaaact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtcgtaattagtagagatcatcatgatgtctctggtactgatgcaccatggagagaaact 420


Query: 421 tcaaacattaaagatggttcccaattttgtgctgatatggctattcataatgttattggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcaaacattaaagatggttcccaattttgtgctgatatggctattcataatgttattggt 480


Query: 481 gattcatttagaggtgcaacttgggttgccattcataatggtggtggtacaggttttggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gattcatttagaggtgcaacttgggttgccattcataatggtggtggtacaggttttggt 540


Query: 541 gaagctatcaatggtggttttggtctctatttatgtggtagtaaattacaagaagaaaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaagctatcaatggtggttttggtctctatttatgtggtagtaaattacaagaagaaaaa 600


Query: 601 gctagaatgatgttaaattgggatgttaataatggtattgctcgtcgttcttggtcatat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gctagaatgatgttaaattgggatgttaataatggtattgctcgtcgttcttggtcatat 660


Query: 661 aatgataacgctgaaaatacaattaaaagagcaatggaattagatccatctttaaaagtt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aatgataacgctgaaaatacaattaaaagagcaatggaattagatccatctttaaaagtt 720


Query: 721 acaattccaaatcatacaagcgatgatttaattaattctttaaatttttnnnnnnnnnnc 780
||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 721 acaattccaaatcatacaagcgatgatttaattaattctttaaatttttaaaaaaaaaac 780


Query: 781 aaaatacnaataatataaatatataaaa 808
||||||||||||||||||||||||||||
Sbjct: 781 aaaatacnaataatataaatatataaaa 808


>Contig-U13124-1 (Contig-U13124-1Q) /CSM_Contig/Contig-U13124-1Q.Seq.d
Length = 113

Score = 121 bits (61), Expect = 2e-27
Identities = 88/101 (87%)
Strand = Plus / Plus


Query: 529 acaggttttggtgaagctatcaatggtggttttggtctctatttatgtggtagtaaatta 588
||||||||||| ||||||||||| || || |||||| | |||||| | |||||||||||
Sbjct: 11 acaggttttggngaagctatcaanggnggntttggtntntatttangnggtagtaaattt 70


Query: 589 caagaagaaaaagctagaatgatgttaaattgggatgttaa 629
||| || |||||| |||||||||||| ||||||||||||||
Sbjct: 71 caanaanaaaaagntagaatgatgttnaattgggatgttaa 111


>Contig-U11856-1 (Contig-U11856-1Q) /CSM_Contig/Contig-U11856-1Q.Seq.d
Length = 843

Score = 56.0 bits (28), Expect = 9e-08
Identities = 78/101 (77%)
Strand = Plus / Plus


Query: 475 attggtgattcatttagaggtgcaacttgggttgccattcataatggtggtggtacaggt 534
||||| ||||| |||| ||| || ||||||| |||| || | || || || || ||||||
Sbjct: 742 attggngattcntttaaaggggcnacttgggntgccnttnanaanggnggcggnacaggt 801


Query: 535 tttggtgaagctatcaatggtggttttggtctctatttatg 575
||||| ||| | ||| || || ||||||| ||| |||||
Sbjct: 802 tttggngaannnancaangggggntttggtcnctanttatg 842


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,423
Number of Sequences: 8402
Number of extensions: 17423
Number of successful extensions: 2226
Number of sequences better than 10.0: 294
length of query: 842
length of database: 8,075,542
effective HSP length: 16
effective length of query: 826
effective length of database: 7,941,110
effective search space: 6559356860
effective search space used: 6559356860
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.25
Homology vs DNA
Query= Contig-U15401-1 (Contig-U15401-1Q) /CSM_Contig/Contig-U15401-1Q.Seq.d
(842 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 1516 0.0 2
(BJ437477) Dictyostelium discoideum cDNA clone:ddv34k10, 3' ... 1471 0.0 1
(BJ430367) Dictyostelium discoideum cDNA clone:ddv7c02, 3' e... 1423 0.0 1
(BJ400670) Dictyostelium discoideum cDNA clone:dds14b11, 3' ... 1417 0.0 1
(BJ438959) Dictyostelium discoideum cDNA clone:ddv39c03, 3' ... 424 e-123 2
(BJ440796) Dictyostelium discoideum cDNA clone:ddv44c19, 3' ... 410 e-116 2
(BJ445776) Dictyostelium discoideum cDNA clone:ddv60j14, 3' ... 153 1e-32 1
(EK325355) 1095467004953 Global-Ocean-Sampling_GS-31-01-01-1... 60 4e-24 5
(ER616399) 1093017261569 Global-Ocean-Sampling_GS-36-01-01-2... 52 6e-24 5
(BJ383499) Dictyostelium discoideum cDNA clone:ddc53b12, 3' ... 121 4e-23 1
(ER628955) 1093018396229 Global-Ocean-Sampling_GS-36-01-01-2... 72 3e-21 4
(FF513979) G709P56RH7.T0 Acorn worm normalized neurula pExpr... 68 6e-21 4
(EK350001) 1095467864161 Global-Ocean-Sampling_GS-31-01-01-1... 78 4e-19 3
(EJ359974) 1092963682523 Global-Ocean-Sampling_GS-28-01-01-1... 70 2e-17 3
(EC818808) SME00002792 esmbsro2 Sawyeria marylandensis cDNA,... 66 8e-17 2
(EK063077) 1092960098862 Global-Ocean-Sampling_GS-31-01-01-1... 56 4e-16 4
(EG342573) SAAH-aab30c07.g1 Agen 0058 Schmidtea mediterranea... 72 6e-16 3
(EE283549) SAAH-aab33a09.g1 Agen 0058 Schmidtea mediterranea... 72 6e-16 3
(DN302265) PL04025A2A08 cDNA from sexually mature hermaphodi... 72 6e-16 3
(EG416142) SAAH-aab45b04.b1 Agen 0058 Schmidtea mediterranea... 72 6e-16 3
(EG342572) SAAH-aab30c07.b1 Agen 0058 Schmidtea mediterranea... 72 6e-16 3
(EG343903) SAAH-aad29a11.g1 Agen 0058 Schmidtea mediterranea... 72 6e-16 3
(EG353573) SAAH-aaa36h03.g1 Agen 0058 Schmidtea mediterranea... 72 6e-16 3
(EE669959) SAAH-aac43a08.g1 Agen 0058 Schmidtea mediterranea... 72 6e-16 3
(EG352554) SAAH-aad24c02.b1 Agen 0058 Schmidtea mediterranea... 72 6e-16 3
(EG415112) SAAH-aab33a09.b1 Agen 0058 Schmidtea mediterranea... 72 6e-16 3
(EG345398) SAAH-aac83e05.g1 Agen 0058 Schmidtea mediterranea... 72 6e-16 3
(EG411184) SAAH-aaa77e01.b1 Agen 0058 Schmidtea mediterranea... 72 6e-16 3
(EE284119) SAAH-aab39f02.g1 Agen 0058 Schmidtea mediterranea... 72 6e-16 3
(EG415703) SAAH-aab39f02.b1 Agen 0058 Schmidtea mediterranea... 72 6e-16 3
(EG346044) SAAH-aad11b05.b1 Agen 0058 Schmidtea mediterranea... 72 6e-16 3
(EG346953) SAAH-aaa73d10.g1 Agen 0058 Schmidtea mediterranea... 72 6e-16 3
(EG407161) SAAH-aac43a08.b1 Agen 0058 Schmidtea mediterranea... 72 6e-16 3
(DN305068) PL05007B1D02 cDNA from sexually mature hermaphodi... 68 8e-15 3
(DN296900) PL04007B1E12 cDNA from sexually mature hermaphodi... 68 8e-15 3
(BJ795215) Caenorhabditis elegans cDNA clone:yk1709c03 : 3' ... 44 2e-14 4
(EE667974) SAAH-aac00e03.g1 Agen 0058 Schmidtea mediterranea... 64 1e-13 3
(EJ601584) 1092961190891 Global-Ocean-Sampling_GS-29-01-01-1... 74 1e-13 2
(EK294208) 1095462341322 Global-Ocean-Sampling_GS-31-01-01-1... 50 2e-13 4
(CO746674) tah93c12.y1 Hydra EST UCI 5 Hydra magnipapillata ... 84 1e-11 1
(AM224897) Paracentrotus lividus EST, clone MPMGp1174J0455Q,... 64 3e-11 3
(EK082010) 1092961111064 Global-Ocean-Sampling_GS-31-01-01-1... 42 4e-11 4
(CJ426725) Molgula tectiformis cDNA, larva clone:mtlv027k20,... 80 2e-10 1
(CJ421449) Molgula tectiformis cDNA, larva clone:mtlv007f11,... 80 2e-10 1
(CJ417487) Molgula tectiformis cDNA, larva clone:mtlv027k20,... 80 2e-10 1
(BJ442703) Dictyostelium discoideum cDNA clone:ddv50a19, 3' ... 52 8e-10 2
(CB394696) OSTR142E10_1 AD-wrmcDNA Caenorhabditis elegans cD... 44 1e-09 3
(BJ790045) Caenorhabditis elegans cDNA clone:yk1633c03 : 3' ... 44 2e-09 3
(BJ789235) Caenorhabditis elegans cDNA clone:yk1615g12 : 3' ... 44 2e-09 3
(AU216411) Caenorhabditis elegans cDNA clone:yk837e09 : 3' e... 44 2e-09 3
(BJ150833) Caenorhabditis elegans cDNA clone:yk1288f08 : 3' ... 44 2e-09 3
(BJ436554) Dictyostelium discoideum cDNA clone:ddv31c18, 3' ... 48 3e-09 2
(ES512254) BIG_AF_20071 Brine Shrimp embryos, 10 hours after... 74 9e-09 1
(ES508613) BIG_AF_16430 Brine Shrimp embryos, 10 hours after... 74 9e-09 1
(BJ436411) Dictyostelium discoideum cDNA clone:ddv31h02, 3' ... 48 1e-08 2
(EC618117) SAAH-aaa77e01.g1 Agen 0058 Schmidtea mediterranea... 46 2e-08 3
(EC824255) SME00007635 esmbsro2 Sawyeria marylandensis cDNA,... 72 4e-08 1
(ER500208) 1093015396173 Global-Ocean-Sampling_GS-35-01-01-1... 56 5e-08 2
(CT782079) Paramecium tetraurelia 5-PRIME EST from clone LK0... 62 7e-08 3
(CT763430) Paramecium tetraurelia 5-PRIME EST from clone LK0... 62 7e-08 3
(CB889023) taa45b07.x1 Hydra EST -III Hydra magnipapillata c... 46 2e-07 2
(DN247092) ACAE-aaa30o01.b1 Hydra EST UCI 5 Hydra magnipapil... 46 2e-07 2
(CB889026) taa45c01.x1 Hydra EST -III Hydra magnipapillata c... 46 2e-07 2
(FK806439) HTAM-aaa25b08.g1 Heterorhabditis_bacteriophora_ES... 64 9e-06 1
(DN249191) ACAE-aaa36l15.b1 Hydra EST UCI 5 Hydra magnipapil... 42 1e-05 2
(FF513978) G709P56FH7.T0 Acorn worm normalized neurula pExpr... 60 3e-05 2
(EJ082852) 1095460063745 Global-Ocean-Sampling_GS-26-01-01-1... 38 4e-05 3
(GE316374) OXBA-aaa23d05.g1 Oxytricha_pSMART_OXBA Sterkiella... 44 1e-04 2
(GE312258) OXBA-aaa23d05.b1 Oxytricha_pSMART_OXBA Sterkiella... 44 1e-04 2
(DL218172) NUCLEIC ACIDS AND PROTEINS FROM STREPTOCOCCUS GRO... 42 1e-04 3
(CQ651406) Sequence 8363 from Patent WO0234771. 42 1e-04 3
(EJ510785) 1095407083125 Global-Ocean-Sampling_GS-28-01-01-1... 34 8e-04 4
(BI863618) kx46d06.y1 Parastrongyloides trichosuri FL pAMP1 ... 38 0.002 3
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 38 0.002 11
(DR778125) BAAC-PNP1256B18.g1 C.remanei EST SB146 Caenorhabd... 48 0.002 2
(DR780750) BAAC-PNP1263K10.g1 C.remanei EST SB146 Caenorhabd... 48 0.002 2
(GE321358) OXBB-aaa22a11.g1 Oxytricha_pSMART_OXBB Sterkiella... 48 0.002 2
(BJ383743) Dictyostelium discoideum cDNA clone:ddc47h03, 3' ... 56 0.002 1
(EJ384910) 1092963798585 Global-Ocean-Sampling_GS-28-01-01-1... 40 0.004 3
(EJ181615) 1092344127341 Global-Ocean-Sampling_GS-27-01-01-1... 50 0.007 2
(EK069570) 1092960173861 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.028 2
(EJ276692) 1095366024369 Global-Ocean-Sampling_GS-27-01-01-1... 42 0.032 2
(BI746008) rm21e09.y1 Meloidogyne arenaria egg pAMP1 v1 Chia... 38 0.073 2
(EK473699) 1095469469503 Global-Ocean-Sampling_GS-32-01-01-1... 36 0.10 2
(DQ181034) Dihammatus sp. UPOL 001017 large subunit ribosoma... 50 0.14 1
(AC101703) Mus musculus chromosome 1, clone RP23-248B15, com... 36 0.24 6
(FC817616) Sr_pAMT7_09g22_T7 S. ratti mixed stage pAMP Stron... 42 0.41 2
(AC159078) Bos taurus clone CH240-46K24, WORKING DRAFT SEQUE... 36 0.42 6
(BX119995) Mouse DNA sequence from clone RP23-318H22 on chro... 48 0.53 1
(AY353826) Nirripirti milgunensis 16S ribosomal RNA gene, pa... 48 0.53 1
(AC091169) Homo sapiens chromosome 18, clone RP11-809A17, co... 48 0.53 1
(AC134444) Mus musculus chromosome UNK clone RP24-159H9, WOR... 48 0.53 1
(AC090237) Homo sapiens chromosome 18 clone RP11-885E20 map ... 48 0.53 1
(BX544886) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 48 0.53 1
(AP002413) Homo sapiens genomic DNA, chromosome 18q12 clone:... 48 0.53 1
(AP001914) Homo sapiens genomic DNA, chromosome 18q12 clone:... 48 0.53 1
(AP001843) Homo sapiens genomic DNA, chromosome 18q12 clone:... 48 0.53 1
(AZ522308) 205PbB12 Pb MBN #21 Plasmodium berghei genomic 3'... 48 0.53 1
(EG405577) SAAH-aac00e03.b1 Agen 0058 Schmidtea mediterranea... 48 0.53 1
(CN631064) taf50h12.y1 Hydra EST Darmstadt I Hydra magnipapi... 48 0.53 1
(BW898438) Branchiostoma floridae cDNA, neurula clone:bfne01... 48 0.53 1
(FG736750) G1145P317RN4.T0 Anolis carolinensis pooled normal... 48 0.53 1
(FG736702) G1145P317FN4.T0 Anolis carolinensis pooled normal... 48 0.53 1
(AM626686) Entamoeba dispar GSS, clone dispar130d10.q1k. 40 0.66 3
(AC120305) Homo sapiens 3 BAC RP11-570H17 (Roswell Park Canc... 36 0.80 5
(CP000685) Flavobacterium johnsoniae UW101, complete genome. 36 0.88 2
(BI397106) kt60c10.y3 Strongyloides ratti L2 pAMP1 v1 Chiape... 36 1.0 2
(CD523921) kw18g01.y1 Strongyloides ratti PA female naive pA... 36 1.1 2
(EJ540717) 1092955370489 Global-Ocean-Sampling_GS-29-01-01-1... 42 1.3 2
(FC817949) Sr_pAMT7_010g16_T7 S. ratti mixed stage pAMP Stro... 36 1.5 2
(EJ026450) 1095454027309 Global-Ocean-Sampling_GS-26-01-01-1... 34 1.5 2
(EJ862700) 1093018216631 Global-Ocean-Sampling_GS-30-02-01-1... 42 1.5 2
(FC815545) Sr_pAMT7_03h03_T7 S. ratti mixed stage pAMP Stron... 42 1.5 2
(FC820337) Sr_pAMT7_017g17_T7 S. ratti mixed stage pAMP Stro... 36 1.5 2
(EK409329) 1095505151942 Global-Ocean-Sampling_GS-31-01-01-1... 42 1.6 2
(ER585456) 1093015868840 Global-Ocean-Sampling_GS-36-01-01-2... 42 1.6 2
(FC816893) Sr_pAMT7_07g07_T7 S. ratti mixed stage pAMP Stron... 36 1.7 2
(EJ782400) 1093017287913 Global-Ocean-Sampling_GS-30-02-01-1... 42 1.7 2
(EK487525) 1095500037671 Global-Ocean-Sampling_GS-32-01-01-1... 42 1.8 2
(EK366226) 1095469399036 Global-Ocean-Sampling_GS-31-01-01-1... 42 1.8 2
(EK504201) 1095506073426 Global-Ocean-Sampling_GS-32-01-01-1... 42 1.9 2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 32 2.1 12
(AC123839) Mus musculus BAC clone RP23-392K4 from 17, comple... 46 2.1 1
(AC208996) Populus trichocarpa clone JGIACSB1089-H15, comple... 46 2.1 1
(AK113165) Ciona intestinalis cDNA, clone:ciad011k22, full i... 46 2.1 1
(AC104315) Rattus norvegicus clone CH230-166M9, *** SEQUENCI... 46 2.1 1
(EK416307) 1095515466999 Global-Ocean-Sampling_GS-31-01-01-1... 46 2.1 1
(EJ401977) 1093012060128 Global-Ocean-Sampling_GS-28-01-01-1... 46 2.1 1
(BW427384) Ciona intestinalis cDNA, clone:cijv015j08, 5'end,... 46 2.1 1
(AV959059) Ciona intestinalis cDNA, clone:ciad11k22, 5' end,... 46 2.1 1
(CP000312) Clostridium perfringens SM101, complete genome. 46 2.1 1
(CP000262) Streptococcus pyogenes MGAS10750, complete genome. 46 2.1 1
(CP000246) Clostridium perfringens ATCC 13124, complete genome. 46 2.1 1
(BA000016) Clostridium perfringens str. 13 DNA, complete gen... 46 2.1 1
(CP000551) Prochlorococcus marinus str. AS9601, complete gen... 34 2.7 15
(AZ902766) RPCI-24-190B6.TJ RPCI-24 Mus musculus genomic clo... 32 2.8 3
(DH341689) Oryzias latipes Fosmid clone:GOLWFno712_a06, forw... 34 3.4 2
(AC158846) Bos taurus clone CH240-353M4, WORKING DRAFT SEQUE... 36 3.7 5
(AC126964) Rattus norvegicus clone CH230-108O14, WORKING DRA... 34 4.0 2
(AC154960) Bos taurus clone CH240-34E12, WORKING DRAFT SEQUE... 36 4.0 5
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 34 4.1 7
(AY225825) Cadia purpurea LEGCYC1B gene, complete cds. 38 4.2 3
(AC185902) Bos taurus clone RP42-135G24, WORKING DRAFT SEQUE... 40 5.2 6
(AL132952) Caenorhabditis elegans YAC Y51H4A. 44 5.2 4
(BZ090809) CH230-222M11.TV CHORI-230 Segment 1 Rattus norveg... 34 5.4 2
(EJ244925) 1095335009950 Global-Ocean-Sampling_GS-27-01-01-1... 42 6.1 2
(ER630241) 1093018417212 Global-Ocean-Sampling_GS-36-01-01-2... 40 6.8 2
(EJ055091) 1095456021795 Global-Ocean-Sampling_GS-26-01-01-1... 40 7.0 2
(AY772389) Agrocybe chaxingu strain SM 960903 apocytochrome ... 40 8.0 2
(DQ181015) Platerodrilus sp. UPOL 000586 large subunit ribos... 44 8.3 1
(AC094051) Rattus norvegicus clone CH230-89D20, *** SEQUENCI... 44 8.3 1
(CU302441) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.3 1
(AC199005) Zea mays chromosome 5 clone ZMMBBb-54J14; ZMMBBb0... 44 8.3 1
(AC167025) Bos taurus clone CH240-187B17, WORKING DRAFT SEQU... 44 8.3 1
(EK554691) 1095516153418 Global-Ocean-Sampling_GS-32-01-01-1... 44 8.3 1
(EK502458) 1095505836234 Global-Ocean-Sampling_GS-32-01-01-1... 44 8.3 1
(EK279700) 1095462290598 Global-Ocean-Sampling_GS-31-01-01-1... 44 8.3 1
(EK274008) 1095462268971 Global-Ocean-Sampling_GS-31-01-01-1... 44 8.3 1
(EK090017) 1092961207716 Global-Ocean-Sampling_GS-31-01-01-1... 44 8.3 1
(EK070695) 1092960190127 Global-Ocean-Sampling_GS-31-01-01-1... 44 8.3 1
(CZ346587) ZMMBF0120M03f ZMMBF Zea mays genomic clone ZMMBF0... 44 8.3 1
(CZ171465) MIAA-10I18b.b1 Meloidogyne incognita BAC end sequ... 44 8.3 1
(CG296832) OGXDK62TH ZM_0.7_1.5_KB Zea mays genomic clone ZM... 44 8.3 1
(CC121615) NDL.58D6.T7 Notre Dame Liverpool Aedes aegypti ge... 44 8.3 1
(BX197808) Danio rerio genomic clone DKEY-210N19, genomic su... 44 8.3 1
(EE030520) ZM_BFc0090A18.r ZM_BFc Zea mays cDNA clone ZM_BFc... 44 8.3 1
(EC347950) LIVERF089464C23 POSSUM_01-POSSUM-LIVER-2KB Tricho... 44 8.3 1
(DR808587) ZM_BFb0035G13.r ZM_BFb Zea mays cDNA 5', mRNA seq... 44 8.3 1
(CA792403) AGENCOURT_10253818 NICHD_XGC_OO1 Xenopus laevis c... 44 8.3 1
(AI714809) 606021A10.x2 606 - Ear tissue cDNA library from S... 44 8.3 1
(EV777137) AGENCOURT_114821141 NIH_MGC_433 Rattus norvegicus... 44 8.3 1
(CP000847) Rickettsia akari str. Hartford, complete genome. 44 8.3 1
(CP000238) Baumannia cicadellinicola str. Hc (Homalodisca co... 44 8.3 1
(AM422018) Candidatus Phytoplasma australiense complete genome. 44 8.3 1
(AC219733) Bos taurus clone CH240-324L14, WORKING DRAFT SEQU... 36 8.7 5

>(AC115612) Dictyostelium discoideum chromosome 2 map 6245135-6357017
strain AX4, complete sequence.
Length = 111882

Score = 1516 bits (765), Expect(2) = 0.0
Identities = 768/769 (99%)
Strand = Plus / Minus


Query: 1 aaaccaggcacagatggtaaagaattcatttatccatcctatgtacaagatattatgggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15816 aaaccaggcacagatggtaaagaattcatttatccatcctatgtacaagatattatgggt 15757


Query: 61 gatatattttcattgggttttggtccattccgttgggtttgtaccagtggcaatccaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15756 gatatattttcattgggttttggtccattccgttgggtttgtaccagtggcaatccaaag 15697


Query: 121 gatttagaaatcaccgatcgtatcgccaaagaattaattgaaaaattaagatctcaacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15696 gatttagaaatcaccgatcgtatcgccaaagaattaattgaaaaattaagatctcaacca 15637


Query: 181 ggtgtaccaaagaatgttcaacaacaatttaatgataatcatctttggattagtcaagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15636 ggtgtaccaaagaatgttcaacaacaatttaatgataatcatctttggattagtcaagca 15577


Query: 241 ggtgaacataaattagttgttggttcacaagcccgtatcctttatagtgattgtattggt 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 15576 ggtgaacataaattagttgttggttcacaagctcgtatcctttatagtgattgtattggt 15517


Query: 301 cgttcagaattagcagttgctttcaataaagctgttgccgatggtacattatcagctcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15516 cgttcagaattagcagttgctttcaataaagctgttgccgatggtacattatcagctcca 15457


Query: 361 gtcgtaattagtagagatcatcatgatgtctctggtactgatgcaccatggagagaaact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15456 gtcgtaattagtagagatcatcatgatgtctctggtactgatgcaccatggagagaaact 15397


Query: 421 tcaaacattaaagatggttcccaattttgtgctgatatggctattcataatgttattggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15396 tcaaacattaaagatggttcccaattttgtgctgatatggctattcataatgttattggt 15337


Query: 481 gattcatttagaggtgcaacttgggttgccattcataatggtggtggtacaggttttggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15336 gattcatttagaggtgcaacttgggttgccattcataatggtggtggtacaggttttggt 15277


Query: 541 gaagctatcaatggtggttttggtctctatttatgtggtagtaaattacaagaagaaaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15276 gaagctatcaatggtggttttggtctctatttatgtggtagtaaattacaagaagaaaaa 15217


Query: 601 gctagaatgatgttaaattgggatgttaataatggtattgctcgtcgttcttggtcatat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15216 gctagaatgatgttaaattgggatgttaataatggtattgctcgtcgttcttggtcatat 15157


Query: 661 aatgataacgctgaaaatacaattaaaagagcaatggaattagatccatctttaaaagtt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15156 aatgataacgctgaaaatacaattaaaagagcaatggaattagatccatctttaaaagtt 15097


Query: 721 acaattccaaatcatacaagcgatgatttaattaattctttaaattttt 769
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15096 acaattccaaatcatacaagcgatgatttaattaattctttaaattttt 15048

Score = 44.1 bits (22), Expect(2) = 0.0
Identities = 27/29 (93%)
Strand = Plus / Minus


Query: 780 caaaatacnaataatataaatatataaaa 808
|||||| | ||||||||||||||||||||
Sbjct: 15037 caaaatccaaataatataaatatataaaa 15009

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 956,389,983
Number of extensions: 59577063
Number of successful extensions: 4976319
Number of sequences better than 10.0: 180
Length of query: 842
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 818
Effective length of database: 96,409,374,237
Effective search space: 78862868125866
Effective search space used: 78862868125866
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.16
Homology vs Protein
Query= Contig-U15401-1 (Contig-U15401-1Q) /CSM_Contig/Contig-U15401-1Q.Seq.d
(842 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC115612_6(AC115612|pid:none) Dictyostelium discoideum chromosom... 531 e-149
(Q86AX3) RecName: Full=Probable urocanate hydratase; Sh... 531 e-149
BC091617_1(BC091617|pid:none) Xenopus tropicalis MGC97780 protei... 328 2e-88
(Q9NAE2) RecName: Full=Probable urocanate hydratase; Sh... 314 3e-84
CU207366_232(CU207366|pid:none) Gramella forsetii KT0803 complet... 309 8e-83
EU016618_28(EU016618|pid:none) Uncultured marine microorganism H... 296 6e-79
CR626927_3865(CR626927|pid:none) Bacteroides fragilis NCTC 9343,... 243 7e-63
AE004092_1590(AE004092|pid:none) Streptococcus pyogenes M1 GAS, ... 238 1e-61
CP000387_415(CP000387|pid:none) Streptococcus sanguinis SK36, co... 238 2e-61
CP000259_1781(CP000259|pid:none) Streptococcus pyogenes MGAS9429... 238 2e-61
AM295007_1707(AM295007|pid:none) Streptococcus pyogenes Manfredo... 237 4e-61
CP000260_1837(CP000260|pid:none) Streptococcus pyogenes MGAS1027... 237 4e-61
CP000056_1750(CP000056|pid:none) Streptococcus pyogenes MGAS6180... 236 5e-61
AE014074_1773(AE014074|pid:none) Streptococcus pyogenes MGAS315,... 236 5e-61
CP000262_1863(CP000262|pid:none) Streptococcus pyogenes MGAS1075... 236 9e-61
CP000139_323(CP000139|pid:none) Bacteroides vulgatus ATCC 8482, ... 234 3e-60
CP001634_442(CP001634|pid:none) Kosmotoga olearia TBF 19.5.1, co... 233 5e-60
CP000140_3547(CP000140|pid:none) Parabacteroides distasonis ATCC... 231 3e-59
AE017283_2107(AE017283|pid:none) Propionibacterium acnes KPA1712... 230 4e-59
AP009380_1800(AP009380|pid:none) Porphyromonas gingivalis ATCC 3... 229 1e-58
CP000724_3913(CP000724|pid:none) Alkaliphilus metalliredigens QY... 228 1e-58
CP000853_571(CP000853|pid:none) Alkaliphilus oremlandii OhILAs, ... 228 1e-58
CP001087_4340(CP001087|pid:none) Desulfobacterium autotrophicum ... 227 3e-58
CP000879_235(CP000879|pid:none) Petrotoga mobilis SJ95, complete... 226 6e-58
AE015924_1601(AE015924|pid:none) Porphyromonas gingivalis W83, c... 226 7e-58
CU466930_1044(CU466930|pid:none) Candidatus Cloacamonas acidamin... 205 1e-51
(Q978N4) RecName: Full=Probable urocanate hydratase; Sh... 151 2e-35
AL445063_235(AL445063|pid:none) Thermoplasma acidophilum complet... 150 4e-35
(Q9HLI9) RecName: Full=Probable urocanate hydratase; Sh... 150 4e-35
CP000910_1299(CP000910|pid:none) Renibacterium salmoninarum ATCC... 139 1e-31
AP011115_4739(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 137 3e-31
(B7IF30) RecName: Full=Urocanate hydratase; Short=Uroca... 137 3e-31
AP008957_5134(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 135 1e-30
CP001341_584(CP001341|pid:none) Arthrobacter chlorophenolicus A6... 135 2e-30
CP000667_1096(CP000667|pid:none) Salinispora tropica CNB-440, co... 135 2e-30
CP000750_4419(CP000750|pid:none) Kineococcus radiotolerans SRS30... 134 4e-30
CP000924_1800(CP000924|pid:none) Thermoanaerobacter pseudethanol... 134 5e-30
CP001618_1828(CP001618|pid:none) Beutenbergia cavernae DSM 12333... 132 1e-29
(Q1AYH3) RecName: Full=Urocanate hydratase; Short=Uroca... 132 1e-29
CP001628_211(CP001628|pid:none) Micrococcus luteus NCTC 2665, co... 130 4e-29
(P25503) RecName: Full=Urocanate hydratase; Short=Uroca... 130 7e-29
(Q7P190) RecName: Full=Urocanate hydratase; Short=Uroca... 129 9e-29
CP001252_100(CP001252|pid:none) Shewanella baltica OS223, comple... 129 1e-28
(Q07W36) RecName: Full=Urocanate hydratase; Short=Uroca... 129 1e-28
(A4FNF1) RecName: Full=Urocanate hydratase; Short=Uroca... 129 1e-28
CP001601_1023(CP001601|pid:none) Corynebacterium aurimucosum ATC... 129 1e-28
CP000353_1423(CP000353|pid:none) Ralstonia metallidurans CH34 me... 129 2e-28
AE016853_5144(AE016853|pid:none) Pseudomonas syringae pv. tomato... 129 2e-28
AE009952_3986(AE009952|pid:none) Yersinia pestis KIM, complete g... 129 2e-28
AP009153_1936(AP009153|pid:none) Gemmatimonas aurantiaca T-27 DN... 129 2e-28
(B0TM56) RecName: Full=Urocanate hydratase; Short=Uroca... 129 2e-28
(Q8EKJ5) RecName: Full=Urocanate hydratase; Short=Uroca... 128 2e-28
(A4Y1I2) RecName: Full=Urocanate hydratase; Short=Uroca... 128 2e-28
AB039932_8(AB039932|pid:none) Agrobacterium rhizogenes plasmid p... 128 2e-28
AM746676_8024(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 128 2e-28
CP000302_83(CP000302|pid:none) Shewanella denitrificans OS217, c... 128 3e-28
AP009493_4462(AP009493|pid:none) Streptomyces griseus subsp. gri... 127 3e-28
CP000094_360(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, c... 127 3e-28
CP000909_950(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl... 127 5e-28
(Q7N295) RecName: Full=Urocanate hydratase; Short=Uroca... 127 5e-28
CP001133_493(CP001133|pid:none) Vibrio fischeri MJ11 chromosome ... 127 5e-28
CP000874_1299(CP000874|pid:none) Rhizobium sp. NGR234 plasmid pN... 127 6e-28
CP001638_1191(CP001638|pid:none) Geobacillus sp. WCH70, complete... 127 6e-28
CP000614_2219(CP000614|pid:none) Burkholderia vietnamiensis G4 c... 127 6e-28
CS354162_7(CS354162|pid:none) Sequence 24 from Patent WO20060245... 126 8e-28
CP000151_2291(CP000151|pid:none) Burkholderia sp. 383 chromosome... 126 8e-28
(Q11E20) RecName: Full=Urocanate hydratase; Short=Uroca... 126 1e-27
CP000961_4786(CP000961|pid:none) Shewanella woodyi ATCC 51908, c... 126 1e-27
(B6ERX7) RecName: Full=Urocanate hydratase; Short=Uroca... 126 1e-27
CP000091_2160(CP000091|pid:none) Ralstonia eutropha JMP134 chrom... 126 1e-27
(A7ZAE5) RecName: Full=Urocanate hydratase; Short=Uroca... 126 1e-27
AM747720_2240(AM747720|pid:none) Burkholderia cenocepacia J2315 ... 125 1e-27
CP000050_2612(CP000050|pid:none) Xanthomonas campestris pv. camp... 125 1e-27
AM181176_351(AM181176|pid:none) Pseudomonas fluorescens SBW25 co... 125 1e-27
(Q9AGU4) RecName: Full=Urocanate hydratase; Short=Uroca... 125 1e-27
AE008922_1553(AE008922|pid:none) Xanthomonas campestris pv. camp... 125 1e-27
(Q9KBE5) RecName: Full=Urocanate hydratase; Short=Uroca... 125 2e-27
(Q9KZ75) RecName: Full=Urocanate hydratase; Short=Uroca... 125 2e-27
AP008229_2280(AP008229|pid:none) Xanthomonas oryzae pv. oryzae M... 125 2e-27
(B7JI79) RecName: Full=Urocanate hydratase; Short=Uroca... 125 2e-27
CP000606_3750(CP000606|pid:none) Shewanella loihica PV-4, comple... 125 2e-27
(B7HCC9) RecName: Full=Urocanate hydratase; Short=Uroca... 125 2e-27
(B2FKG1) RecName: Full=Urocanate hydratase; Short=Uroca... 125 2e-27
(A0RH38) RecName: Full=Urocanate hydratase; Short=Uroca... 125 2e-27
CP001113_798(CP001113|pid:none) Salmonella enterica subsp. enter... 125 2e-27
AY596297_1594(AY596297|pid:none) Haloarcula marismortui ATCC 430... 125 2e-27
(Q81Y46) RecName: Full=Urocanate hydratase; Short=Uroca... 125 2e-27
AM933173_754(AM933173|pid:none) Salmonella enterica subsp. enter... 124 3e-27
(B5XZ80) RecName: Full=Urocanate hydratase; Short=Uroca... 124 3e-27
(A6VDL7) RecName: Full=Urocanate hydratase; Short=Uroca... 124 3e-27
CP000557_1210(CP000557|pid:none) Geobacillus thermodenitrificans... 124 3e-27
CP001144_800(CP001144|pid:none) Salmonella enterica subsp. enter... 124 3e-27
AM933172_731(AM933172|pid:none) Salmonella enterica subsp. enter... 124 3e-27
(A9MTJ2) RecName: Full=Urocanate hydratase; Short=Uroca... 124 3e-27
CP000577_1570(CP000577|pid:none) Rhodobacter sphaeroides ATCC 17... 124 3e-27
(A9MJF0) RecName: Full=Urocanate hydratase; Short=Uroca... 124 3e-27
CP001193_312(CP001193|pid:none) Rhizobium leguminosarum bv. trif... 124 3e-27
(Q1GSG8) RecName: Full=Urocanate hydratase; Short=Uroca... 124 3e-27
CP001150_1253(CP001150|pid:none) Rhodobacter sphaeroides KD131 c... 124 4e-27
(A9MCL2) RecName: Full=Urocanate hydratase; Short=Uroca... 124 4e-27
AM260479_691(AM260479|pid:none) Ralstonia eutropha H16 chromosom... 124 4e-27
(Q5WCP7) RecName: Full=Urocanate hydratase; Short=Uroca... 124 4e-27
CP000713_844(CP000713|pid:none) Psychrobacter sp. PRwf-1, comple... 124 4e-27
(A5VVJ8) RecName: Full=Urocanate hydratase; Short=Uroca... 124 4e-27
CP000967_2095(CP000967|pid:none) Xanthomonas oryzae pv. oryzae P... 124 4e-27
CP000943_1556(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 124 4e-27
CP000143_1528(CP000143|pid:none) Rhodobacter sphaeroides 2.4.1 c... 124 5e-27
(B0SYU4) RecName: Full=Urocanate hydratase; Short=Uroca... 124 5e-27
(P58987) RecName: Full=Urocanate hydratase; Short=Uroca... 124 5e-27
CP000323_1923(CP000323|pid:none) Psychrobacter cryohalolentis K5... 124 5e-27
(A1JSW8) RecName: Full=Urocanate hydratase; Short=Uroca... 124 5e-27
(B8CGY4) RecName: Full=Urocanate hydratase; Short=Uroca... 124 5e-27
BX571965_2362(BX571965|pid:none) Burkholderia pseudomallei strai... 123 7e-27
(Q6MJM2) RecName: Full=Urocanate hydratase; Short=Uroca... 123 7e-27
(A8AJ16) Urocanate hydratase (EC 4.2.1.49) (Urocanase) (Imidazol... 123 7e-27
(Q92V80) RecName: Full=Urocanate hydratase; Short=Uroca... 123 7e-27
CP000644_3688(CP000644|pid:none) Aeromonas salmonicida subsp. sa... 123 7e-27
(Q87Q76) RecName: Full=Urocanate hydratase; Short=Uroca... 123 7e-27
CP001635_159(CP001635|pid:none) Variovorax paradoxus S110 chromo... 123 7e-27
CP001337_1608(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 123 9e-27
(Q1I3Q8) RecName: Full=Urocanate hydratase; Short=Uroca... 123 9e-27
(A5VFA2) RecName: Full=Urocanate hydratase; Short=Uroca... 123 9e-27
(B0KM58) RecName: Full=Urocanate hydratase; Short=Uroca... 123 9e-27
AM236085_209(AM236085|pid:none) Rhizobium leguminosarum bv. vici... 123 9e-27
CP000489_710(CP000489|pid:none) Paracoccus denitrificans PD1222 ... 123 9e-27
(B7GUU5) RecName: Full=Urocanate hydratase; Short=Uroca... 122 1e-26
CP000316_1148(CP000316|pid:none) Polaromonas sp. JS666, complete... 122 1e-26
M33923_1(M33923|pid:none) Pseudomonas putida urocanase (hutU) ge... 122 1e-26
CP001489_821(CP001489|pid:none) Brucella melitensis ATCC 23457 c... 122 1e-26
CU468230_3419(CU468230|pid:none) Acinetobacter baumannii str. SD... 122 1e-26
(A7GQZ9) RecName: Full=Urocanate hydratase; Short=Uroca... 122 1e-26
(P25080) RecName: Full=Urocanate hydratase; Short=Uroca... 122 1e-26
(A5WA67) RecName: Full=Urocanate hydratase; Short=Uroca... 122 1e-26
AE008290_8(AE008290|pid:none) Agrobacterium tumefaciens str. C58... 122 1e-26
CP000739_1064(CP000739|pid:none) Sinorhizobium medicae WSM419 pl... 122 1e-26
CU928164_683(CU928164|pid:none) Escherichia coli IAI39 chromosom... 122 1e-26
(Q49ZQ7) RecName: Full=Urocanate hydratase; Short=Uroca... 122 1e-26
(A6WYU6) RecName: Full=Urocanate hydratase; Short=Uroca... 122 1e-26
CP001075_76(CP001075|pid:none) Rhizobium etli CIAT 652 plasmid p... 122 1e-26
CU633749_643(CU633749|pid:none) Cupriavidus taiwanensis str. LMG... 122 2e-26
(P67417) RecName: Full=Urocanate hydratase; Short=Uroca... 122 2e-26
CP000478_2353(CP000478|pid:none) Syntrophobacter fumaroxidans MP... 122 2e-26
(Q983H8) RecName: Full=Urocanate hydratase; Short=Uroca... 122 2e-26
CP000884_149(CP000884|pid:none) Delftia acidovorans SPH-1, compl... 122 2e-26
(B1J2Q5) RecName: Full=Urocanate hydratase; Short=Uroca... 122 2e-26
(Q8DA20) RecName: Full=Urocanate hydratase; Short=Uroca... 122 2e-26
(Q6GEA4) RecName: Full=Urocanate hydratase; Short=Uroca... 122 2e-26
CU468135_2225(CU468135|pid:none) Erwinia tasmaniensis strain ET1... 121 3e-26
CP001349_992(CP001349|pid:none) Methylobacterium nodulans ORS 20... 121 3e-26
AM295250_1818(AM295250|pid:none) Staphylococcus carnosus subsp. ... 121 3e-26
(Q89GV4) RecName: Full=Urocanate hydratase; Short=Uroca... 121 3e-26
AM412319_1(AM412319|pid:none) [Polyangium] brachysporum glidobac... 121 3e-26
(A4YNK8) RecName: Full=Urocanate hydratase; Short=Uroca... 121 3e-26
CP000634_782(CP000634|pid:none) Agrobacterium vitis S4 chromosom... 121 3e-26
CP000031_2146(CP000031|pid:none) Ruegeria pomeroyi DSS-3, comple... 121 3e-26
FP236842_2357(FP236842|pid:none) Erwinia pyrifoliae strain Ep1/9... 121 3e-26
AJ938182_2208(AJ938182|pid:none) Staphylococcus aureus RF122 com... 121 3e-26
CP001157_2526(CP001157|pid:none) Azotobacter vinelandii DJ, comp... 121 3e-26
CP001103_3101(CP001103|pid:none) Alteromonas macleodii 'Deep eco... 120 4e-26
CP000358_266(CP000358|pid:none) Deinococcus geothermalis DSM 113... 120 6e-26
(Q8XW28) RecName: Full=Urocanate hydratase; Short=Uroca... 120 7e-26
AE017354_1353(AE017354|pid:none) Legionella pneumophila subsp. p... 120 7e-26
CP001359_2424(CP001359|pid:none) Anaeromyxobacter dehalogenans 2... 119 1e-25
CR628336_1337(CR628336|pid:none) Legionella pneumophila str. Par... 119 1e-25
CP000360_1046(CP000360|pid:none) Acidobacteria bacterium Ellin34... 119 1e-25
CR555306_3260(CR555306|pid:none) Azoarcus sp. EbN1 complete geno... 119 2e-25
(Q9RZ02) RecName: Full=Urocanate hydratase; Short=Uroca... 119 2e-25
CP000251_1503(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 119 2e-25
(Q931G1) RecName: Full=Urocanate hydratase; Short=Uroca... 119 2e-25
CP000352_2841(CP000352|pid:none) Ralstonia metallidurans CH34, c... 118 3e-25
CP001068_2837(CP001068|pid:none) Ralstonia pickettii 12J chromos... 117 4e-25
AP008955_4230(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 116 1e-24
CP000769_2297(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, c... 114 3e-24
CP000542_3569(CP000542|pid:none) Verminephrobacter eiseniae EF01... 114 5e-24
CP000613_3165(CP000613|pid:none) Rhodospirillum centenum SW, com... 112 2e-23
CP000660_1424(CP000660|pid:none) Pyrobaculum arsenaticum DSM 135... 104 3e-21
CP000023_1215(CP000023|pid:none) Streptococcus thermophilus LMG ... 103 5e-21
CP000390_2524(CP000390|pid:none) Mesorhizobium sp. BNC1, complet... 97 7e-19
BX571965_1694(BX571965|pid:none) Burkholderia pseudomallei strai... 91 6e-17
AE009951_1974(AE009951|pid:none) Fusobacterium nucleatum subsp. ... 87 7e-16
AF248314_1(AF248314|pid:none) Uncultured bacterium pCosAS1 uroca... 86 2e-15
CP001074_375(CP001074|pid:none) Rhizobium etli CIAT 652, complet... 85 3e-15
CP000628_442(CP000628|pid:none) Agrobacterium radiobacter K84 ch... 83 1e-14
BC154999_1(BC154999|pid:none) Xenopus tropicalis cDNA clone IMAG... 83 1e-14
AM236080_368(AM236080|pid:none) Rhizobium leguminosarum bv. vici... 81 4e-14
CP000521_3727(CP000521|pid:none) Acinetobacter baumannii ATCC 17... 71 5e-11
CU914168_2419(CU914168|pid:none) Ralstonia solanacearum strain I... 41 0.043
CP001160_273(CP001160|pid:none) Thalassiosira pseudonana CCMP133... 37 1.1
AM230707_1(AM230707|pid:none) Pseudomonas avellanae partial hrpZ... 35 4.0
DQ149153_31(DQ149153|pid:none) Cercopithecine herpesvirus 16 str... 35 4.0
CP001147_1667(CP001147|pid:none) Thermodesulfovibrio yellowstoni... 34 5.3
AY445077_1(AY445077|pid:none) Canine distemper virus isolate 98-... 34 6.9
AM270302_21(AM270302|pid:none) Aspergillus niger contig An13c008... 34 6.9
CP001100_18(CP001100|pid:none) Chloroherpeton thalassium ATCC 35... 33 9.0
AJ009656_1(AJ009656|pid:none) Canine distemper virus N gene, iso... 33 9.0
CP000656_4441(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c... 33 9.0

>AC115612_6(AC115612|pid:none) Dictyostelium discoideum chromosome 2
map 6245135-6357017 strain AX4, complete sequence.
Length = 654

Score = 531 bits (1367), Expect = e-149
Identities = 256/256 (100%), Positives = 256/256 (100%)
Frame = +1

Query: 1 KPGTDGKEFIYPSYVQDIMGDIFSLGFGPFRWVCTSGNPKDLEITDRIAKELIEKLRSQP 180
KPGTDGKEFIYPSYVQDIMGDIFSLGFGPFRWVCTSGNPKDLEITDRIAKELIEKLRSQP
Sbjct: 399 KPGTDGKEFIYPSYVQDIMGDIFSLGFGPFRWVCTSGNPKDLEITDRIAKELIEKLRSQP 458

Query: 181 GVPKNVQQQFNDNHLWISQAGEHKLVVGSQARILYSDCIGRSELAVAFNKAVADGTLSAP 360
GVPKNVQQQFNDNHLWISQAGEHKLVVGSQARILYSDCIGRSELAVAFNKAVADGTLSAP
Sbjct: 459 GVPKNVQQQFNDNHLWISQAGEHKLVVGSQARILYSDCIGRSELAVAFNKAVADGTLSAP 518

Query: 361 VVISRDHHDVSGTDAPWRETSNIKDGSQFCADMAIHNVIGDSFRGATWVAIHNGGGTGFG 540
VVISRDHHDVSGTDAPWRETSNIKDGSQFCADMAIHNVIGDSFRGATWVAIHNGGGTGFG
Sbjct: 519 VVISRDHHDVSGTDAPWRETSNIKDGSQFCADMAIHNVIGDSFRGATWVAIHNGGGTGFG 578

Query: 541 EAINGGFGLYLCGSKLQEEKARMMLNWDVNNGIARRSWSYNDNAENTIKRAMELDPSLKV 720
EAINGGFGLYLCGSKLQEEKARMMLNWDVNNGIARRSWSYNDNAENTIKRAMELDPSLKV
Sbjct: 579 EAINGGFGLYLCGSKLQEEKARMMLNWDVNNGIARRSWSYNDNAENTIKRAMELDPSLKV 638

Query: 721 TIPNHTSDDLINSLNF 768
TIPNHTSDDLINSLNF
Sbjct: 639 TIPNHTSDDLINSLNF 654

Lambda K H
0.317 0.135 0.418

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,354,566,719
Number of extensions: 28392066
Number of successful extensions: 81294
Number of sequences better than 10.0: 196
Number of HSP's gapped: 80835
Number of HSP's successfully gapped: 196
Length of query: 280
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 153
Effective length of database: 640,137,871
Effective search space: 97941094263
Effective search space used: 97941094263
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.80 gvh: 0.44 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
20.0 %: nuclear
12.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for Contig-U15401-1 is cyt

VS (DIR, S) 0
VH (FL, L) 6
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0