Homology vs CSM-cDNA |
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Homology vs DNA |
Query= Contig-U15400-1 (Contig-U15400-1Q) /CSM_Contig/Contig-U15400-1Q.Seq.d (1298 letters)
Database: ddbj_B 98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ339915) Dictyostelium discoideum cDNA clone:dda10n23, 3' ... 1219 0.0 1 (BJ350353) Dictyostelium discoideum cDNA clone:dda39f15, 3' ... 1185 0.0 1 (BJ401028) Dictyostelium discoideum cDNA clone:dds15i24, 3' ... 1128 0.0 1 (BJ346799) Dictyostelium discoideum cDNA clone:dda25h02, 3' ... 1051 0.0 2 (BJ345510) Dictyostelium discoideum cDNA clone:dda23m21, 3' ... 1061 0.0 1 (BJ372885) Dictyostelium discoideum cDNA clone:ddc14c20, 3' ... 773 0.0 3 (BJ332560) Dictyostelium discoideum cDNA clone:dda39f15, 5' ... 910 0.0 1 (BJ362645) Dictyostelium discoideum cDNA clone:ddc22j21, 5' ... 823 0.0 1 (BJ323507) Dictyostelium discoideum cDNA clone:dda10n23, 5' ... 492 0.0 3 (C84730) Dictyostelium discoideum slug cDNA, clone SSE890. 460 e-157 2 (C94477) Dictyostelium discoideum slug cDNA, clone SSL173. 333 e-116 2 (BJ400532) Dictyostelium discoideum cDNA clone:dds13l15, 3' ... 168 5e-72 3 (BJ329471) Dictyostelium discoideum cDNA clone:dda25h02, 5' ... 178 6e-57 3 (AU072570) Dictyostelium discoideum slug cDNA, clone SSE890. 208 4e-49 1 (CR392003) Zebrafish DNA sequence from clone DKEY-242N9 in l... 40 0.034 2 (AC146500) Danio rerio clone CH211-130P22, complete sequence. 40 0.034 2 (BZ397965) EINBE10TR EI_10_12_KB Entamoeba invadens genomic ... 38 0.043 2 (EK330272) 1095467021656 Global-Ocean-Sampling_GS-31-01-01-1... 36 0.055 3 (AC207503) Tupaia belangeri clone CH275-167F20, WORKING DRAF... 48 0.14 4 (AC108205) Homo sapiens BAC clone RP11-140N6 from 4, complet... 38 0.15 5 (CL557283) OB__Ba0009P09.f OB__Ba Oryza brachyantha genomic ... 40 0.20 2 (AC097973) Rattus norvegicus clone CH230-35C21, WORKING DRAF... 50 0.21 1 (AC079050) Homo sapiens chromosome 8 clone RP11-111G3 map 8,... 44 0.27 6 (AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 32 0.28 14 (AB265408) Xandrames dholaria gene for 16S rRNA, partial seq... 46 0.30 2 (AL844509) Plasmodium falciparum chromosome 13. 40 0.31 15 (EF506945) Leptosira terrestris UTEX 333 chloroplast, comple... 34 0.36 9 (AC095041) Homo sapiens BAC clone RP11-84H6 from 4, complete... 38 0.36 5 (CU570947) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.42 6 (AY394561) Campylobacter jejuni plasmid pTet, complete seque... 44 0.48 6 (FI204098) CccaBa013-N13TR CccABa Cajanus cajan genomic clon... 34 0.61 2 (AC012419) Homo sapiens chromosome 2 clone RP11-18C16 map 2,... 46 0.67 4 (CP000497) Pichia stipitis CBS 6054 chromosome 3, complete s... 48 0.83 1 (CU928316) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.83 1 (CT163031) Sus scrofa genomic clone CH242-127F21, genomic su... 48 0.83 1 (EI838192) POTE516TF Solanum tuberosum RHPOTKEY BAC ends Sol... 46 0.84 2 (AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 36 0.90 10 (BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 40 0.97 17 (AB265387) Cystidia stratonice gene for 16S rRNA, partial se... 46 1.1 2 (AC176649) Strongylocentrotus purpuratus clone R3-3080O01, W... 34 1.4 7 (AJ245480) Brassica napus subsp. napus AtPP-A14 gene for put... 36 1.6 4 (AC097362) Rattus norvegicus clone CH230-3E15, WORKING DRAFT... 34 1.6 2 (AC147471) Medicago truncatula clone mth2-7a7, complete sequ... 36 1.7 2 (AC137819) Medicago truncatula chromosome 8 clone mth2-21i24... 36 1.7 2 (AC162031) Medicago truncatula chromosome 8 clone mth2-194a2... 36 1.7 2 (CR932958) Medicago truncatula chromosome 5 clone mth2-174i2... 36 1.7 2 (AC145331) Medicago truncatula clone mth2-8o7, complete sequ... 36 1.7 2 (AC109060) Rattus norvegicus clone CH230-95O6, *** SEQUENCIN... 40 1.8 4 (AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5... 38 2.2 10 (AQ411976) CpG0938B CpIOWAgDNA1 Cryptosporidium parvum genom... 34 2.2 2 (FF329584) 280440859 Pea aphid whole body normalized full le... 32 2.2 2 (DE338416) Bombyx mori genomic DNA, BAC clone:BET_027_L03. 32 2.2 2 (GD266640) USDA-FP_198394 Asian citrus psyllid testes (Hemip... 34 2.2 2 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 34 2.2 17 (CR513448) mth4-42B21FM2 BAC end, cultivar Jemalong A17 of M... 36 2.2 2 (ET719767) CHO_OF119xd07r1.ab1 CHO_OF Nicotiana tabacum geno... 34 2.3 2 (CU469464) Candidatus Phytoplasma mali strain AT complete ch... 34 2.5 16 (AZ524051) 226PbF06 Pb MBN #21 Plasmodium berghei genomic 3'... 36 2.5 2 (AC129992) Rattus norvegicus clone CH230-176I1, *** SEQUENCI... 42 2.7 6 (AC233204) Monodelphis domestica clone VMRC18-699K12, WORKIN... 36 2.8 6 (FF692754) XABT104728.rev Gateway compatible cien cDNA libra... 40 2.9 2 (EK121101) 1092963432570 Global-Ocean-Sampling_GS-31-01-01-1... 40 3.2 2 (BV499769) S222P6513FA9.T0 Karlien Pan troglodytes verus STS... 46 3.3 1 (BV207585) sqnm223940 Human DNA (Sequenom) Homo sapiens STS ... 46 3.3 1 (BV018897) S212P6716FB11.T0 CZECHII/Ei Mus musculus STS geno... 46 3.3 1 (AC154695) Mus musculus BAC clone RP24-341I23 from 13, compl... 46 3.3 1 (AC140780) Mus musculus BAC clone RP24-500J16 from chromosom... 46 3.3 1 (AC115289) Mus musculus BAC clone RP23-57G16 from 13, comple... 46 3.3 1 (AC198408) Pan troglodytes BAC clone CH251-288N22 from chrom... 46 3.3 1 (AC194672) Pan troglodytes BAC clone CH251-166N15 from chrom... 46 3.3 1 (CU468237) S.lycopersicum DNA sequence from clone LE_HBa-303... 46 3.3 1 (GC528200) Sequence 1710 from patent US 7411051. 46 3.3 1 (EA745461) Sequence 1710 from patent US 7368531. 46 3.3 1 (EA736007) Sequence 7453 from patent US 7368527. 46 3.3 1 (EA736006) Sequence 7452 from patent US 7368527. 46 3.3 1 (EA433420) Sequence 3 from patent US 7335467. 46 3.3 1 (EA119798) Sequence 3982 from patent US 7205146. 46 3.3 1 (DD386325) COMPOSITIONS AND METHODS FOR THE DIAGNOSIS AND TR... 46 3.3 1 (CQ725926) Sequence 11860 from Patent WO02068579. 46 3.3 1 (EU569764) Phthonandria atrilineata mitochondrion, complete ... 46 3.3 1 (AB265402) Phigaliohybernia fulvinfula gene for 16S rRNA, pa... 46 3.3 1 (AB265400) Parapercnia giraffata gene for 16S rRNA, partial ... 46 3.3 1 (AB265393) Lassaba nikkonis gene for 16S rRNA, partial seque... 46 3.3 1 (AB265390) Erannis golda gene for 16S rRNA, partial sequence. 46 3.3 1 (AB265375) Abraxas miranda gene for 16S rRNA, partial sequence. 46 3.3 1 (AK025046) Homo sapiens cDNA: FLJ21393 fis, clone COL03515, ... 46 3.3 1 (AF151907) Homo sapiens CGI-149 protein mRNA, complete cds. 46 3.3 1 (AC068288) Homo sapiens BAC clone RP11-592A2 from 2, complet... 46 3.3 1 (AC007021) Homo sapiens PAC clone RP6-155F9 from Xq23, compl... 46 3.3 1 (FP090906) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.3 1 (AC215770) Felis catus clone RP86-57I18, WORKING DRAFT SEQUE... 46 3.3 1 (AC186117) Callicebus moloch clone LB5-387D21, WORKING DRAFT... 46 3.3 1 (AC185166) Felis catus clone RP86-121A23, WORKING DRAFT SEQU... 46 3.3 1 (AC164285) Bos taurus clone CH240-140G2, *** SEQUENCING IN P... 46 3.3 1 (FH011965) CHO_OF409xn04r1.ab1 CHO_OF Nicotiana tabacum geno... 46 3.3 1 (ER529881) 1093015740940 Global-Ocean-Sampling_GS-35-01-01-1... 46 3.3 1 (EK546717) 1095516096965 Global-Ocean-Sampling_GS-32-01-01-1... 46 3.3 1 (EK283270) 1095462303130 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.3 1 (DU916756) 324246 Tomato EcoRI BAC Library Solanum lycopersi... 46 3.3 1 (EG933332) EST_ssal_evf_35156 ssalevf mixed_tissue Salmo sal... 46 3.3 1 (EG767096) EST_ssal_evd_43171 ssalevd thymus Salmo salar cDN... 46 3.3 1 (EG767095) EST_ssal_evd_43170 ssalevd thymus Salmo salar cDN... 46 3.3 1 (EG623184) EMBRYOF088210G7 POSSUM_01-POSSUM-C-EMBRYO-2KB Tri... 46 3.3 1 (EB222115) PEG002-C-102262-501 Normalized Pedal-Pleural Gang... 46 3.3 1 (DB427424) Asterina pectinifera cDNA clone:apg1j23, 3' end. 46 3.3 1 (DB166273) Homo sapiens cDNA clone THYRO1001111, 5' end, mRN... 46 3.3 1 (CX873336) HESC4_79_F11.g1_A037 NIH_MGC_262 Homo sapiens cDN... 46 3.3 1 (AL596737) Homo sapiens mRNA; EST DKFZp451B061_r1 (from clo... 46 3.3 1 (CN297884) 17000600174955 GRN_PRENEU Homo sapiens cDNA 5', m... 46 3.3 1 (CB217010) NISC_nq11d05.y1 NICHD_HS_Ut2 Homo sapiens cDNA cl... 46 3.3 1 (AI701105) we10a08.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone ... 46 3.3 1 (BX095751) RZPD Homo sapiens cDNA clone IMAGp998I20733 = IMA... 46 3.3 1 (BU192410) AGENCOURT_7934740 NIH_MGC_68 Homo sapiens cDNA cl... 46 3.3 1 (BQ439192) AGENCOURT_7774750 NIH_MGC_68 Homo sapiens cDNA cl... 46 3.3 1 (BQ333985) MR2-MT0126-290800-011-g04 MT0126 Homo sapiens cDN... 46 3.3 1 (BQ333920) MR2-MT0126-240800-003-g04 MT0126 Homo sapiens cDN... 46 3.3 1 (BQ333904) MR2-MT0126-230800-004-e09 MT0126 Homo sapiens cDN... 46 3.3 1 (BQ333902) MR2-MT0126-230800-004-d06 MT0126 Homo sapiens cDN... 46 3.3 1 (BQ333893) MR2-MT0126-210800-001-h12 MT0126 Homo sapiens cDN... 46 3.3 1 (BQ228406) AGENCOURT_7594252 NIH_MGC_70 Homo sapiens cDNA cl... 46 3.3 1 (BP271693) Homo sapiens cDNA clone: KAT00891, Sugano cDNA li... 46 3.3 1 (BP252532) Homo sapiens cDNA clone: HRC01456, Sugano cDNA li... 46 3.3 1 (BM693472) UI-E-CK1-afm-n-06-0-UI.r1 UI-E-CK1 Homo sapiens c... 46 3.3 1 (BM668751) UI-E-CK1-afm-n-06-0-UI.s2 UI-E-CK1 Homo sapiens c... 46 3.3 1 (BM468067) AGENCOURT_6432307 NIH_MGC_71 Homo sapiens cDNA cl... 46 3.3 1 (BI856400) 603387764F1 NIH_MGC_87 Homo sapiens cDNA clone IM... 46 3.3 1 (BG958847) PM4-CT0801-150301-010-b12 CT0801 Homo sapiens cDN... 46 3.3 1 (BE674335) 7d78d04.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone ... 46 3.3 1 (W46344) zc30b10.r1 Soares_senescent_fibroblasts_NbHSF Homo ... 46 3.3 1 (W05246) za83a06.r1 Soares_fetal_lung_NbHL19W Homo sapiens c... 46 3.3 1 (W04379) za77f05.r1 Soares_fetal_lung_NbHL19W Homo sapiens c... 46 3.3 1 (R99416) yq79a05.r1 Soares fetal liver spleen 1NFLS Homo sap... 46 3.3 1 (AW953180) EST365250 MAGE resequences, MAGB Homo sapiens cDN... 46 3.3 1 (AA085801) zl90e11.r1 Stratagene colon (#937204) Homo sapien... 46 3.3 1 (AE015927) Clostridium tetani E88, complete genome. 46 3.3 1 (FH168881) CHO_OF3297xk17r1.ab1 CHO_OF3 Nicotiana tabacum ge... 42 3.5 2 (AE017308) Mycoplasma mobile 163K complete genome. 38 3.6 15 (BZ391337) EINAG70TR EI_10_12_KB Entamoeba invadens genomic ... 40 3.6 2 (FH373273) CHO_OF4530xl17r1.ab1 CHO_OF4 Nicotiana tabacum ge... 42 3.6 2 (EK341984) 1095467065791 Global-Ocean-Sampling_GS-31-01-01-1... 44 3.8 2 (CU972429) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 3.8 7 (AL731825) Bacillus thuringiensis subsp. israelensis plasmid... 34 3.9 4 (AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 32 3.9 10 (AB265401) Pareclipsis gracilis gene for 16S rRNA, partial s... 42 4.0 2 (AC126795) Mus musculus BAC clone RP24-576D17 from chromosom... 42 4.0 5 (AC226871) Monodelphis domestica clone VMRC18-569O10, WORKIN... 36 4.1 4 (AL034558) Plasmodium falciparum MAL3P2. 36 4.2 7 (AC220456) Bos taurus clone CH240-357L15, WORKING DRAFT SEQU... 40 4.2 8 (AY394560) Campylobacter coli plasmid pCC31, complete sequence. 44 4.3 6 (AY714214) Campylobacter jejuni strain 81-176 plasmid pTet, ... 44 4.5 6 (BX005088) Zebrafish DNA sequence from clone CH211-160E15 in... 38 4.8 5 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 34 4.8 12 (AC106532) Rattus norvegicus clone CH230-136K8, WORKING DRAF... 38 4.9 10 (CU856568) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 4.9 8 (AP009389) Pelotomaculum thermopropionicum SI DNA, complete ... 34 5.0 2 (AC140830) Homo sapiens chromosome 5 clone RP11-901K15, comp... 38 5.4 7 (AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 5.6 10 (AC116100) Dictyostelium discoideum chromosome 2 map 6163571... 34 5.8 6 (AC106507) Rattus norvegicus clone CH230-206D13, *** SEQUENC... 34 6.0 2 (AC111692) Rattus norvegicus clone CH230-16P23, *** SEQUENCI... 34 6.0 2 (AC148865) Canis lupus familiaris clone RP81-343E4, WORKING ... 34 6.1 2 (FG346245) EST m4d04 - [Humulus lupulus] Humulus lupulus Mal... 34 6.1 2 (AC215364) Solanum lycopersicum chromosome 2 clone C02HBa003... 34 6.2 2 (AC023553) Homo sapiens chromosome 4 clone RP11-579G19 map 4... 34 6.2 9 (AC215400) Solanum lycopersicum chromosome 2 clone C02HBa015... 34 6.2 2 (AC215466) Solanum lycopersicum chromosome 2 clone C02SLe012... 34 6.4 2 (BX663616) Zebrafish DNA sequence from clone DKEY-287H22 in ... 38 6.7 5 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 30 6.8 13 (AC130060) Rattus norvegicus clone CH230-437N20, WORKING DRA... 38 7.0 6 (FI310246) AdH1181-CPY2-M7TF AdH1 Arachis duranensis genomic... 36 7.1 3 (BH691855) BOMAW33TF BO_2_3_KB Brassica oleracea genomic clo... 36 7.3 3 (AC168821) Strongylocentrotus purpuratus clone R3-13E24, WOR... 36 7.4 7 (AC123121) Rattus norvegicus clone CH230-22B7, *** SEQUENCIN... 40 7.8 5 (AC117890) Rattus norvegicus clone CH230-201J23, *** SEQUENC... 44 8.0 7 (Y11429) T.annulata plastid DNA for partial rps12, ORF204 an... 34 8.1 2 (AB087746) Ixodes uriae mitochondrial DNA, complete genome, ... 34 8.1 3 (AC217753) Tupaia belangeri clone CH275-536G17, WORKING DRAF... 34 8.2 4 (EK543048) 1095516070284 Global-Ocean-Sampling_GS-32-01-01-1... 34 8.2 2 (EK556209) 1095516167200 Global-Ocean-Sampling_GS-32-01-01-1... 34 8.2 2 (EK319997) 1095462425905 Global-Ocean-Sampling_GS-31-01-01-1... 32 8.3 2 (ET691853) CHO_OF330xj17f1.ab1 CHO_OF Nicotiana tabacum geno... 34 8.3 2 (ET946415) CHO_OF314xi23r1.ab1 CHO_OF Nicotiana tabacum geno... 34 8.3 2 (AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 34 8.5 8 (CJ196925) Mus musculus mammary gland RCB-0527 Jyg-MC(B) cDN... 38 8.7 2 (AC096422) Rattus norvegicus clone CH230-28B9, *** SEQUENCIN... 44 9.1 5 (AC188933) Canis familiaris chromosome 14, clone XX-466C13, ... 42 9.7 7
>(BJ339915) Dictyostelium discoideum cDNA clone:dda10n23, 3' end, single read. Length = 665
Score = 1219 bits (615), Expect = 0.0 Identities = 615/615 (100%) Strand = Plus / Minus
Query: 539 taaagaccgctggtagtttaggtggtggtaatggtgacattgaaatggattacacttttt 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 665 taaagaccgctggtagtttaggtggtggtaatggtgacattgaaatggattacacttttt 606
Query: 599 atgaacaaagaaatactctcttttatcaagatcaacaaaattcaaaatactatcaagata 658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 605 atgaacaaagaaatactctcttttatcaagatcaacaaaattcaaaatactatcaagata 546
Query: 659 attgtgtaaacatctcatgcgatcaagaacaagaaattctaaatagttgtttatcatctt 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 545 attgtgtaaacatctcatgcgatcaagaacaagaaattctaaatagttgtttatcatctt 486
Query: 719 caaagaaatcaaattcaagaaaaaagaatacaaccaacgccaacatcaccgccaacacta 778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 485 caaagaaatcaaattcaagaaaaaagaatacaaccaacgccaacatcaccgccaacacta 426
Query: 779 atgaagataatgaactattttcaaaattaaaaaagaatttaagacctttctttaagaaat 838 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 425 atgaagataatgaactattttcaaaattaaaaaagaatttaagacctttctttaagaaat 366
Query: 839 catttttattggatagtttattcactcaagagacagagaaagagattttatcattcatca 898 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 365 catttttattggatagtttattcactcaagagacagagaaagagattttatcattcatca 306
Query: 899 gaggtgatgattgcttttatagaaatactccatccaatacaatggagtttaatcaagaga 958 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 305 gaggtgatgattgcttttatagaaatactccatccaatacaatggagtttaatcaagaga 246
Query: 959 acccagcaaagagattaattatccatggtttagcctcttactattcattacaaagtagaa 1018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 245 acccagcaaagagattaattatccatggtttagcctcttactattcattacaaagtagaa 186
Query: 1019 gtcataccaacaataatggtaaacgtattcttgtccttagaaaacaaaaatcaatgccac 1078 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 185 gtcataccaacaataatggtaaacgtattcttgtccttagaaaacaaaaatcaatgccac 126
Query: 1079 ctcttcctgaacaaacaatcgttcaatatttaatctctgaatcaaagaaacaagctatcc 1138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 125 ctcttcctgaacaaacaatcgttcaatatttaatctctgaatcaaagaaacaagctatcc 66
Query: 1139 aggttcatcaagttc 1153 ||||||||||||||| Sbjct: 65 aggttcatcaagttc 51
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 98226423 Number of Hits to DB: 1,449,130,156 Number of extensions: 98105953 Number of successful extensions: 9161900 Number of sequences better than 10.0: 188 Length of query: 1298 Length of database: 98,766,808,389 Length adjustment: 24 Effective length of query: 1274 Effective length of database: 96,409,374,237 Effective search space: 122825542777938 Effective search space used: 122825542777938 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
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Homology vs Protein |
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