Contig-U15400-1
Contig ID Contig-U15400-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15400-1 (Contig-U15400-1Q) /CSM_Contig/Contig-U15400-1Q.Seq.d
TTTATAAAAATTAAAAATAATAATAATAATAAGGTACAACGACACCATAT
CTCCATTAATAGTTTTACAGAAATACACAATCTGTGTACTATAAAAATGG
ATGATAAATTAATTAATAATCACCCCCCCTTAACAAAATAATTATTTAAA
ATAATTGTTTTCATCATATCATAATCATATCATAATCATATCATATAAAT
TTAATCATATCATATCATAATCATCATTCACATAATCATATTATACATCA
TATAAATTATAATTTATGAATGAATGAATTGAATGAATGAATTGAATGAT
AAAAATAGAATGAAAATTAATGATGAAGCAGATAAAAAGAATTCAACGTT
AACCTCATCAAGAGGAAATAATAAAAAGAATGATAACGATTATTCAGTAG
CACGTGAATTTGCAAATTTACAATCAGTGGCAGCCAGTAAAAAGAAATCA
AAATCCAATAGAGATTCACTTGCATTTCGTGATTCACCAGGTAAACCGGG
CACAAAGAGATTCAATCGTTATTTAAATACTCAATTCTTAAAGACCGCTG
GTAGTTTAGGTGGTGGTAATGGTGACATTGAAATGGATTACACTTTTTAT
GAACAAAGAAATACTCTCTTTTATCAAGATCAACAAAATTCAAAATACTA
TCAAGATAATTGTGTAAACATCTCATGCGATCAAGAACAAGAAATTCTAA
ATAGTTGTTTATCATCTTCAAAGAAATCAAATTCAAGAAAAAAGAATACA
ACCAACGCCAACATCACCGCCAACACTAATGAAGATAATGAACTATTTTC
AAAATTAAAAAAGAATTTAAGACCTTTCTTTAAGAAATCATTTTTATTGG
ATAGTTTATTCACTCAAGAGACAGAGAAAGAGATTTTATCATTCATCAGA
GGTGATGATTGCTTTTATAGAAATACTCCATCCAATACAATGGAGTTTAA
TCAAGAGAACCCAGCAAAGAGATTAATTATCCATGGTTTAGCCTCTTACT
ATTCATTACAAAGTAGAAGTCATACCAACAATAATGGTAAACGTATTCTT
GTCCTTAGAAAACAAAAATCAATGCCACCTCTTCCTGAACAAACAATCGT
TCAATATTTAATCTCTGAATCAAAGAAACAAGCTATCCAGGTTCATCAAG
TTCAAAGAAAAAAAGTTATTAAAAAATCACAATCAATTTATATTAAAAAA
AGAGTTTTAACAACACCAGTAATCATCTCTGCTGATATTCCAAATTCTAA
TGATTAAAGTTATTATTATTTTTTTTTTAAATCAAAAAAAAAAAAAAA

Gap no gap
Contig length 1298
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 590254
End point 588957
Strand (PLUS/MINUS) MINUS
Number of clones 9
Number of EST 10
Link to clone list U15400
List of clone(s)

est1=AFE795E,1,1203
est2=CHA385F,154,761
est3=AHE359E,178,1277
est4=SSE890F,208,808
est5=SFH293Z,553,1134
est6=AFL187Z,619,1204
est7=CFG674Z,619,1247
est8=SFG362Z,881,1070
est9=SSE890Z,918,1298
est10=SSL173E,983,1285
Translated Amino Acid sequence
fikiknnnnnkvqrhhisinsfteihnlctikmddklinnhppltk*lfkiivfiis*sy
hnhii*i*syhiiiiihiiilyii*iiiye*mn*MNELNDKNRMKINDEADKKNSTLTSS
RGNNKKNDNDYSVAREFANLQSVAASKKKSKSNRDSLAFRDSPGKPGTKRFNRYLNTQFL
KTAGSLGGGNGDIEMDYTFYEQRNTLFYQDQQNSKYYQDNCVNISCDQEQEILNSCLSSS
KKSNSRKKNTTNANITANTNEDNELFSKLKKNLRPFFKKSFLLDSLFTQETEKEILSFIR
GDDCFYRNTPSNTMEFNQENPAKRLIIHGLASYYSLQSRSHTNNNGKRILVLRKQKSMPP
LPEQTIVQYLISESKKQAIQVHQVQRKKVIKKSQSIYIKKRVLTTPVIISADIPNSND*s
yyyfffkskkkk


Translated Amino Acid sequence (All Frames)
Frame A:
fikiknnnnnkvqrhhisinsfteihnlctikmddklinnhppltk*lfkiivfiis*sy
hnhii*i*syhiiiiihiiilyii*iiiye*mn*MNELNDKNRMKINDEADKKNSTLTSS
RGNNKKNDNDYSVAREFANLQSVAASKKKSKSNRDSLAFRDSPGKPGTKRFNRYLNTQFL
KTAGSLGGGNGDIEMDYTFYEQRNTLFYQDQQNSKYYQDNCVNISCDQEQEILNSCLSSS
KKSNSRKKNTTNANITANTNEDNELFSKLKKNLRPFFKKSFLLDSLFTQETEKEILSFIR
GDDCFYRNTPSNTMEFNQENPAKRLIIHGLASYYSLQSRSHTNNNGKRILVLRKQKSMPP
LPEQTIVQYLISESKKQAIQVHQVQRKKVIKKSQSIYIKKRVLTTPVIISADIPNSND*s
yyyfffkskkkk


Frame B:
l*klkiiiiiryndtisplivlqkyticvl*kwmin*liitpp*qnnylk*lfssyhnhi
iiisykfnhiis*ssft*syytsykl*fmne*ie*mn*mikie*klmmkqikriqr*phq
eeiikrmitiiq*hvnlqiynqwqpvkrnqnpieihlhfvihqvnraqrdsivi*ilns*
rplvv*vvvmvtlkwitlfmnkeilsfikinkiqntikiiv*tshaiknkkf*ivvyhlq
rnqiqekriqptptspptlmkimnyfqn*kri*dlslrnhfywivyslkrqrkrfyhsse
vmiafieilhpiqwslikrtqqrd*lsmv*pltihykveviptimvnvflslenknqchl
flnkqsfni*slnqrnklsrfikfkekkllknhnqfilkkef*qhq*ssllifqilmikv
iiifflnqkkkk


Frame C:
ykn*k*****gtttpylh**fyrntqsvyykng**in**spplnkiii*nncfhhiiiis
*syhinliisyhnhhshnhiihhinynl*mnelne*ie**k*nen***sr*kefnvnlik
rk**ke**rlfsst*ickftisgsq*keikiq*rftcis*ftr*tghkeiqslfkysilk
drw*frww*w*h*nglhfl*tkkysllsrstkfkilsr*lckhlmrsrtrnsk*lfiifk
eikfkkkeynqrqhhrqh**r**tifkikkefktfl*eiifig*fihsrdrerdfiihqr
**lll*kysiqyngv*srepskeinypwfslllfitk*ksyqq*w*tyscp*ktkinats
s*tnnrsifnl*iketsypgsssskkksy*kitinly*kksfnntsnhlc*yskf**lkl
llfff*ikkkkk


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15400-1 (Contig-U15400-1Q)
/CSM_Contig/Contig-U15400-1Q.Seq.d
(1298 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15400-1 (Contig-U15400-1Q) /CSM_Contig/Conti... 1653 0.0
Contig-U15380-1 (Contig-U15380-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U13337-1 (Contig-U13337-1Q) /CSM_Contig/Conti... 44 5e-04
Contig-U13310-1 (Contig-U13310-1Q) /CSM_Contig/Conti... 44 5e-04
Contig-U09313-1 (Contig-U09313-1Q) /CSM_Contig/Conti... 44 5e-04
Contig-U04829-1 (Contig-U04829-1Q) /CSM_Contig/Conti... 44 5e-04
Contig-U15909-1 (Contig-U15909-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U12164-1 (Contig-U12164-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U03709-1 (Contig-U03709-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U11444-1 (Contig-U11444-1Q) /CSM_Contig/Conti... 36 0.13

>Contig-U15400-1 (Contig-U15400-1Q) /CSM_Contig/Contig-U15400-1Q.Seq.d
Length = 1298

Score = 1653 bits (834), Expect = 0.0
Identities = 834/834 (100%)
Strand = Plus / Plus


Query: 318 taatgatgaagcagataaaaagaattcaacgttaacctcatcaagaggaaataataaaaa 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 taatgatgaagcagataaaaagaattcaacgttaacctcatcaagaggaaataataaaaa 377


Query: 378 gaatgataacgattattcagtagcacgtgaatttgcaaatttacaatcagtggcagccag 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gaatgataacgattattcagtagcacgtgaatttgcaaatttacaatcagtggcagccag 437


Query: 438 taaaaagaaatcaaaatccaatagagattcacttgcatttcgtgattcaccaggtaaacc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 taaaaagaaatcaaaatccaatagagattcacttgcatttcgtgattcaccaggtaaacc 497


Query: 498 gggcacaaagagattcaatcgttatttaaatactcaattcttaaagaccgctggtagttt 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gggcacaaagagattcaatcgttatttaaatactcaattcttaaagaccgctggtagttt 557


Query: 558 aggtggtggtaatggtgacattgaaatggattacactttttatgaacaaagaaatactct 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aggtggtggtaatggtgacattgaaatggattacactttttatgaacaaagaaatactct 617


Query: 618 cttttatcaagatcaacaaaattcaaaatactatcaagataattgtgtaaacatctcatg 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cttttatcaagatcaacaaaattcaaaatactatcaagataattgtgtaaacatctcatg 677


Query: 678 cgatcaagaacaagaaattctaaatagttgtttatcatcttcaaagaaatcaaattcaag 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cgatcaagaacaagaaattctaaatagttgtttatcatcttcaaagaaatcaaattcaag 737


Query: 738 aaaaaagaatacaaccaacgccaacatcaccgccaacactaatgaagataatgaactatt 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aaaaaagaatacaaccaacgccaacatcaccgccaacactaatgaagataatgaactatt 797


Query: 798 ttcaaaattaaaaaagaatttaagacctttctttaagaaatcatttttattggatagttt 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ttcaaaattaaaaaagaatttaagacctttctttaagaaatcatttttattggatagttt 857


Query: 858 attcactcaagagacagagaaagagattttatcattcatcagaggtgatgattgctttta 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 attcactcaagagacagagaaagagattttatcattcatcagaggtgatgattgctttta 917


Query: 918 tagaaatactccatccaatacaatggagtttaatcaagagaacccagcaaagagattaat 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 tagaaatactccatccaatacaatggagtttaatcaagagaacccagcaaagagattaat 977


Query: 978 tatccatggtttagcctcttactattcattacaaagtagaagtcataccaacaataatgg 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 tatccatggtttagcctcttactattcattacaaagtagaagtcataccaacaataatgg 1037


Query: 1038 taaacgtattcttgtccttagaaaacaaaaatcaatgccacctcttcctgaacaaacaat 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1038 taaacgtattcttgtccttagaaaacaaaaatcaatgccacctcttcctgaacaaacaat 1097


Query: 1098 cgttcaatatttaatctctgaatcaaagaaacaagctatccaggttcatcaagt 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1098 cgttcaatatttaatctctgaatcaaagaaacaagctatccaggttcatcaagt 1151


Score = 212 bits (107), Expect = 1e-54
Identities = 121/128 (94%)
Strand = Plus / Plus


Query: 33 ggtacaacgacaccatatctccattaatagttttacagaaatacacaatctgtgtactat 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33 ggtacaacgacaccatatctccattaatagttttacagaaatacacaatctgtgtactat 92


Query: 93 aaaaatggatgataaattaattaataatcannnnnnnttaacaaaataattatttaaaat 152
|||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 93 aaaaatggatgataaattaattaataatcacccccccttaacaaaataattatttaaaat 152


Query: 153 aattgttt 160
||||||||
Sbjct: 153 aattgttt 160


Score = 163 bits (82), Expect = 8e-40
Identities = 82/82 (100%)
Strand = Plus / Plus


Query: 1202 gagttttaacaacaccagtaatcatctctgctgatattccaaattctaatgattaaagtt 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1202 gagttttaacaacaccagtaatcatctctgctgatattccaaattctaatgattaaagtt 1261


Query: 1262 attattattttttttttaaatc 1283
||||||||||||||||||||||
Sbjct: 1262 attattattttttttttaaatc 1283


>Contig-U15380-1 (Contig-U15380-1Q) /CSM_Contig/Contig-U15380-1Q.Seq.d
Length = 132

Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 1260 ttattattattttttttttaaat 1282
|||||||||||||||||||||||
Sbjct: 51 ttattattattttttttttaaat 73


Score = 32.2 bits (16), Expect = 2.0
Identities = 22/24 (91%)
Strand = Plus / Plus


Query: 1255 taaagttattattatttttttttt 1278
|||| ||||||||||| |||||||
Sbjct: 43 taaaattattattattattttttt 66


>Contig-U13337-1 (Contig-U13337-1Q) /CSM_Contig/Contig-U13337-1Q.Seq.d
Length = 479

Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus


Query: 1260 ttattattattttttttttaaa 1281
||||||||||||||||||||||
Sbjct: 145 ttattattattttttttttaaa 124


Score = 30.2 bits (15), Expect = 8.1
Identities = 18/19 (94%)
Strand = Plus / Minus


Query: 1260 ttattattatttttttttt 1278
||||||||||| |||||||
Sbjct: 148 ttattattattattttttt 130


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 60,595
Number of Sequences: 8402
Number of extensions: 60595
Number of successful extensions: 9846
Number of sequences better than 10.0: 1367
length of query: 1298
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1282
effective length of database: 7,941,110
effective search space: 10180503020
effective search space used: 10180503020
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.25
Homology vs DNA
Query= Contig-U15400-1 (Contig-U15400-1Q) /CSM_Contig/Contig-U15400-1Q.Seq.d
(1298 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ339915) Dictyostelium discoideum cDNA clone:dda10n23, 3' ... 1219 0.0 1
(BJ350353) Dictyostelium discoideum cDNA clone:dda39f15, 3' ... 1185 0.0 1
(BJ401028) Dictyostelium discoideum cDNA clone:dds15i24, 3' ... 1128 0.0 1
(BJ346799) Dictyostelium discoideum cDNA clone:dda25h02, 3' ... 1051 0.0 2
(BJ345510) Dictyostelium discoideum cDNA clone:dda23m21, 3' ... 1061 0.0 1
(BJ372885) Dictyostelium discoideum cDNA clone:ddc14c20, 3' ... 773 0.0 3
(BJ332560) Dictyostelium discoideum cDNA clone:dda39f15, 5' ... 910 0.0 1
(BJ362645) Dictyostelium discoideum cDNA clone:ddc22j21, 5' ... 823 0.0 1
(BJ323507) Dictyostelium discoideum cDNA clone:dda10n23, 5' ... 492 0.0 3
(C84730) Dictyostelium discoideum slug cDNA, clone SSE890. 460 e-157 2
(C94477) Dictyostelium discoideum slug cDNA, clone SSL173. 333 e-116 2
(BJ400532) Dictyostelium discoideum cDNA clone:dds13l15, 3' ... 168 5e-72 3
(BJ329471) Dictyostelium discoideum cDNA clone:dda25h02, 5' ... 178 6e-57 3
(AU072570) Dictyostelium discoideum slug cDNA, clone SSE890. 208 4e-49 1
(CR392003) Zebrafish DNA sequence from clone DKEY-242N9 in l... 40 0.034 2
(AC146500) Danio rerio clone CH211-130P22, complete sequence. 40 0.034 2
(BZ397965) EINBE10TR EI_10_12_KB Entamoeba invadens genomic ... 38 0.043 2
(EK330272) 1095467021656 Global-Ocean-Sampling_GS-31-01-01-1... 36 0.055 3
(AC207503) Tupaia belangeri clone CH275-167F20, WORKING DRAF... 48 0.14 4
(AC108205) Homo sapiens BAC clone RP11-140N6 from 4, complet... 38 0.15 5
(CL557283) OB__Ba0009P09.f OB__Ba Oryza brachyantha genomic ... 40 0.20 2
(AC097973) Rattus norvegicus clone CH230-35C21, WORKING DRAF... 50 0.21 1
(AC079050) Homo sapiens chromosome 8 clone RP11-111G3 map 8,... 44 0.27 6
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 32 0.28 14
(AB265408) Xandrames dholaria gene for 16S rRNA, partial seq... 46 0.30 2
(AL844509) Plasmodium falciparum chromosome 13. 40 0.31 15
(EF506945) Leptosira terrestris UTEX 333 chloroplast, comple... 34 0.36 9
(AC095041) Homo sapiens BAC clone RP11-84H6 from 4, complete... 38 0.36 5
(CU570947) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.42 6
(AY394561) Campylobacter jejuni plasmid pTet, complete seque... 44 0.48 6
(FI204098) CccaBa013-N13TR CccABa Cajanus cajan genomic clon... 34 0.61 2
(AC012419) Homo sapiens chromosome 2 clone RP11-18C16 map 2,... 46 0.67 4
(CP000497) Pichia stipitis CBS 6054 chromosome 3, complete s... 48 0.83 1
(CU928316) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.83 1
(CT163031) Sus scrofa genomic clone CH242-127F21, genomic su... 48 0.83 1
(EI838192) POTE516TF Solanum tuberosum RHPOTKEY BAC ends Sol... 46 0.84 2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 36 0.90 10
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 40 0.97 17
(AB265387) Cystidia stratonice gene for 16S rRNA, partial se... 46 1.1 2
(AC176649) Strongylocentrotus purpuratus clone R3-3080O01, W... 34 1.4 7
(AJ245480) Brassica napus subsp. napus AtPP-A14 gene for put... 36 1.6 4
(AC097362) Rattus norvegicus clone CH230-3E15, WORKING DRAFT... 34 1.6 2
(AC147471) Medicago truncatula clone mth2-7a7, complete sequ... 36 1.7 2
(AC137819) Medicago truncatula chromosome 8 clone mth2-21i24... 36 1.7 2
(AC162031) Medicago truncatula chromosome 8 clone mth2-194a2... 36 1.7 2
(CR932958) Medicago truncatula chromosome 5 clone mth2-174i2... 36 1.7 2
(AC145331) Medicago truncatula clone mth2-8o7, complete sequ... 36 1.7 2
(AC109060) Rattus norvegicus clone CH230-95O6, *** SEQUENCIN... 40 1.8 4
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5... 38 2.2 10
(AQ411976) CpG0938B CpIOWAgDNA1 Cryptosporidium parvum genom... 34 2.2 2
(FF329584) 280440859 Pea aphid whole body normalized full le... 32 2.2 2
(DE338416) Bombyx mori genomic DNA, BAC clone:BET_027_L03. 32 2.2 2
(GD266640) USDA-FP_198394 Asian citrus psyllid testes (Hemip... 34 2.2 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 34 2.2 17
(CR513448) mth4-42B21FM2 BAC end, cultivar Jemalong A17 of M... 36 2.2 2
(ET719767) CHO_OF119xd07r1.ab1 CHO_OF Nicotiana tabacum geno... 34 2.3 2
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 34 2.5 16
(AZ524051) 226PbF06 Pb MBN #21 Plasmodium berghei genomic 3'... 36 2.5 2
(AC129992) Rattus norvegicus clone CH230-176I1, *** SEQUENCI... 42 2.7 6
(AC233204) Monodelphis domestica clone VMRC18-699K12, WORKIN... 36 2.8 6
(FF692754) XABT104728.rev Gateway compatible cien cDNA libra... 40 2.9 2
(EK121101) 1092963432570 Global-Ocean-Sampling_GS-31-01-01-1... 40 3.2 2
(BV499769) S222P6513FA9.T0 Karlien Pan troglodytes verus STS... 46 3.3 1
(BV207585) sqnm223940 Human DNA (Sequenom) Homo sapiens STS ... 46 3.3 1
(BV018897) S212P6716FB11.T0 CZECHII/Ei Mus musculus STS geno... 46 3.3 1
(AC154695) Mus musculus BAC clone RP24-341I23 from 13, compl... 46 3.3 1
(AC140780) Mus musculus BAC clone RP24-500J16 from chromosom... 46 3.3 1
(AC115289) Mus musculus BAC clone RP23-57G16 from 13, comple... 46 3.3 1
(AC198408) Pan troglodytes BAC clone CH251-288N22 from chrom... 46 3.3 1
(AC194672) Pan troglodytes BAC clone CH251-166N15 from chrom... 46 3.3 1
(CU468237) S.lycopersicum DNA sequence from clone LE_HBa-303... 46 3.3 1
(GC528200) Sequence 1710 from patent US 7411051. 46 3.3 1
(EA745461) Sequence 1710 from patent US 7368531. 46 3.3 1
(EA736007) Sequence 7453 from patent US 7368527. 46 3.3 1
(EA736006) Sequence 7452 from patent US 7368527. 46 3.3 1
(EA433420) Sequence 3 from patent US 7335467. 46 3.3 1
(EA119798) Sequence 3982 from patent US 7205146. 46 3.3 1
(DD386325) COMPOSITIONS AND METHODS FOR THE DIAGNOSIS AND TR... 46 3.3 1
(CQ725926) Sequence 11860 from Patent WO02068579. 46 3.3 1
(EU569764) Phthonandria atrilineata mitochondrion, complete ... 46 3.3 1
(AB265402) Phigaliohybernia fulvinfula gene for 16S rRNA, pa... 46 3.3 1
(AB265400) Parapercnia giraffata gene for 16S rRNA, partial ... 46 3.3 1
(AB265393) Lassaba nikkonis gene for 16S rRNA, partial seque... 46 3.3 1
(AB265390) Erannis golda gene for 16S rRNA, partial sequence. 46 3.3 1
(AB265375) Abraxas miranda gene for 16S rRNA, partial sequence. 46 3.3 1
(AK025046) Homo sapiens cDNA: FLJ21393 fis, clone COL03515, ... 46 3.3 1
(AF151907) Homo sapiens CGI-149 protein mRNA, complete cds. 46 3.3 1
(AC068288) Homo sapiens BAC clone RP11-592A2 from 2, complet... 46 3.3 1
(AC007021) Homo sapiens PAC clone RP6-155F9 from Xq23, compl... 46 3.3 1
(FP090906) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.3 1
(AC215770) Felis catus clone RP86-57I18, WORKING DRAFT SEQUE... 46 3.3 1
(AC186117) Callicebus moloch clone LB5-387D21, WORKING DRAFT... 46 3.3 1
(AC185166) Felis catus clone RP86-121A23, WORKING DRAFT SEQU... 46 3.3 1
(AC164285) Bos taurus clone CH240-140G2, *** SEQUENCING IN P... 46 3.3 1
(FH011965) CHO_OF409xn04r1.ab1 CHO_OF Nicotiana tabacum geno... 46 3.3 1
(ER529881) 1093015740940 Global-Ocean-Sampling_GS-35-01-01-1... 46 3.3 1
(EK546717) 1095516096965 Global-Ocean-Sampling_GS-32-01-01-1... 46 3.3 1
(EK283270) 1095462303130 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.3 1
(DU916756) 324246 Tomato EcoRI BAC Library Solanum lycopersi... 46 3.3 1
(EG933332) EST_ssal_evf_35156 ssalevf mixed_tissue Salmo sal... 46 3.3 1
(EG767096) EST_ssal_evd_43171 ssalevd thymus Salmo salar cDN... 46 3.3 1
(EG767095) EST_ssal_evd_43170 ssalevd thymus Salmo salar cDN... 46 3.3 1
(EG623184) EMBRYOF088210G7 POSSUM_01-POSSUM-C-EMBRYO-2KB Tri... 46 3.3 1
(EB222115) PEG002-C-102262-501 Normalized Pedal-Pleural Gang... 46 3.3 1
(DB427424) Asterina pectinifera cDNA clone:apg1j23, 3' end. 46 3.3 1
(DB166273) Homo sapiens cDNA clone THYRO1001111, 5' end, mRN... 46 3.3 1
(CX873336) HESC4_79_F11.g1_A037 NIH_MGC_262 Homo sapiens cDN... 46 3.3 1
(AL596737) Homo sapiens mRNA; EST DKFZp451B061_r1 (from clo... 46 3.3 1
(CN297884) 17000600174955 GRN_PRENEU Homo sapiens cDNA 5', m... 46 3.3 1
(CB217010) NISC_nq11d05.y1 NICHD_HS_Ut2 Homo sapiens cDNA cl... 46 3.3 1
(AI701105) we10a08.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone ... 46 3.3 1
(BX095751) RZPD Homo sapiens cDNA clone IMAGp998I20733 = IMA... 46 3.3 1
(BU192410) AGENCOURT_7934740 NIH_MGC_68 Homo sapiens cDNA cl... 46 3.3 1
(BQ439192) AGENCOURT_7774750 NIH_MGC_68 Homo sapiens cDNA cl... 46 3.3 1
(BQ333985) MR2-MT0126-290800-011-g04 MT0126 Homo sapiens cDN... 46 3.3 1
(BQ333920) MR2-MT0126-240800-003-g04 MT0126 Homo sapiens cDN... 46 3.3 1
(BQ333904) MR2-MT0126-230800-004-e09 MT0126 Homo sapiens cDN... 46 3.3 1
(BQ333902) MR2-MT0126-230800-004-d06 MT0126 Homo sapiens cDN... 46 3.3 1
(BQ333893) MR2-MT0126-210800-001-h12 MT0126 Homo sapiens cDN... 46 3.3 1
(BQ228406) AGENCOURT_7594252 NIH_MGC_70 Homo sapiens cDNA cl... 46 3.3 1
(BP271693) Homo sapiens cDNA clone: KAT00891, Sugano cDNA li... 46 3.3 1
(BP252532) Homo sapiens cDNA clone: HRC01456, Sugano cDNA li... 46 3.3 1
(BM693472) UI-E-CK1-afm-n-06-0-UI.r1 UI-E-CK1 Homo sapiens c... 46 3.3 1
(BM668751) UI-E-CK1-afm-n-06-0-UI.s2 UI-E-CK1 Homo sapiens c... 46 3.3 1
(BM468067) AGENCOURT_6432307 NIH_MGC_71 Homo sapiens cDNA cl... 46 3.3 1
(BI856400) 603387764F1 NIH_MGC_87 Homo sapiens cDNA clone IM... 46 3.3 1
(BG958847) PM4-CT0801-150301-010-b12 CT0801 Homo sapiens cDN... 46 3.3 1
(BE674335) 7d78d04.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone ... 46 3.3 1
(W46344) zc30b10.r1 Soares_senescent_fibroblasts_NbHSF Homo ... 46 3.3 1
(W05246) za83a06.r1 Soares_fetal_lung_NbHL19W Homo sapiens c... 46 3.3 1
(W04379) za77f05.r1 Soares_fetal_lung_NbHL19W Homo sapiens c... 46 3.3 1
(R99416) yq79a05.r1 Soares fetal liver spleen 1NFLS Homo sap... 46 3.3 1
(AW953180) EST365250 MAGE resequences, MAGB Homo sapiens cDN... 46 3.3 1
(AA085801) zl90e11.r1 Stratagene colon (#937204) Homo sapien... 46 3.3 1
(AE015927) Clostridium tetani E88, complete genome. 46 3.3 1
(FH168881) CHO_OF3297xk17r1.ab1 CHO_OF3 Nicotiana tabacum ge... 42 3.5 2
(AE017308) Mycoplasma mobile 163K complete genome. 38 3.6 15
(BZ391337) EINAG70TR EI_10_12_KB Entamoeba invadens genomic ... 40 3.6 2
(FH373273) CHO_OF4530xl17r1.ab1 CHO_OF4 Nicotiana tabacum ge... 42 3.6 2
(EK341984) 1095467065791 Global-Ocean-Sampling_GS-31-01-01-1... 44 3.8 2
(CU972429) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 3.8 7
(AL731825) Bacillus thuringiensis subsp. israelensis plasmid... 34 3.9 4
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 32 3.9 10
(AB265401) Pareclipsis gracilis gene for 16S rRNA, partial s... 42 4.0 2
(AC126795) Mus musculus BAC clone RP24-576D17 from chromosom... 42 4.0 5
(AC226871) Monodelphis domestica clone VMRC18-569O10, WORKIN... 36 4.1 4
(AL034558) Plasmodium falciparum MAL3P2. 36 4.2 7
(AC220456) Bos taurus clone CH240-357L15, WORKING DRAFT SEQU... 40 4.2 8
(AY394560) Campylobacter coli plasmid pCC31, complete sequence. 44 4.3 6
(AY714214) Campylobacter jejuni strain 81-176 plasmid pTet, ... 44 4.5 6
(BX005088) Zebrafish DNA sequence from clone CH211-160E15 in... 38 4.8 5
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 34 4.8 12
(AC106532) Rattus norvegicus clone CH230-136K8, WORKING DRAF... 38 4.9 10
(CU856568) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 4.9 8
(AP009389) Pelotomaculum thermopropionicum SI DNA, complete ... 34 5.0 2
(AC140830) Homo sapiens chromosome 5 clone RP11-901K15, comp... 38 5.4 7
(AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 5.6 10
(AC116100) Dictyostelium discoideum chromosome 2 map 6163571... 34 5.8 6
(AC106507) Rattus norvegicus clone CH230-206D13, *** SEQUENC... 34 6.0 2
(AC111692) Rattus norvegicus clone CH230-16P23, *** SEQUENCI... 34 6.0 2
(AC148865) Canis lupus familiaris clone RP81-343E4, WORKING ... 34 6.1 2
(FG346245) EST m4d04 - [Humulus lupulus] Humulus lupulus Mal... 34 6.1 2
(AC215364) Solanum lycopersicum chromosome 2 clone C02HBa003... 34 6.2 2
(AC023553) Homo sapiens chromosome 4 clone RP11-579G19 map 4... 34 6.2 9
(AC215400) Solanum lycopersicum chromosome 2 clone C02HBa015... 34 6.2 2
(AC215466) Solanum lycopersicum chromosome 2 clone C02SLe012... 34 6.4 2
(BX663616) Zebrafish DNA sequence from clone DKEY-287H22 in ... 38 6.7 5
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 30 6.8 13
(AC130060) Rattus norvegicus clone CH230-437N20, WORKING DRA... 38 7.0 6
(FI310246) AdH1181-CPY2-M7TF AdH1 Arachis duranensis genomic... 36 7.1 3
(BH691855) BOMAW33TF BO_2_3_KB Brassica oleracea genomic clo... 36 7.3 3
(AC168821) Strongylocentrotus purpuratus clone R3-13E24, WOR... 36 7.4 7
(AC123121) Rattus norvegicus clone CH230-22B7, *** SEQUENCIN... 40 7.8 5
(AC117890) Rattus norvegicus clone CH230-201J23, *** SEQUENC... 44 8.0 7
(Y11429) T.annulata plastid DNA for partial rps12, ORF204 an... 34 8.1 2
(AB087746) Ixodes uriae mitochondrial DNA, complete genome, ... 34 8.1 3
(AC217753) Tupaia belangeri clone CH275-536G17, WORKING DRAF... 34 8.2 4
(EK543048) 1095516070284 Global-Ocean-Sampling_GS-32-01-01-1... 34 8.2 2
(EK556209) 1095516167200 Global-Ocean-Sampling_GS-32-01-01-1... 34 8.2 2
(EK319997) 1095462425905 Global-Ocean-Sampling_GS-31-01-01-1... 32 8.3 2
(ET691853) CHO_OF330xj17f1.ab1 CHO_OF Nicotiana tabacum geno... 34 8.3 2
(ET946415) CHO_OF314xi23r1.ab1 CHO_OF Nicotiana tabacum geno... 34 8.3 2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 34 8.5 8
(CJ196925) Mus musculus mammary gland RCB-0527 Jyg-MC(B) cDN... 38 8.7 2
(AC096422) Rattus norvegicus clone CH230-28B9, *** SEQUENCIN... 44 9.1 5
(AC188933) Canis familiaris chromosome 14, clone XX-466C13, ... 42 9.7 7

>(BJ339915) Dictyostelium discoideum cDNA clone:dda10n23, 3' end,
single read.
Length = 665

Score = 1219 bits (615), Expect = 0.0
Identities = 615/615 (100%)
Strand = Plus / Minus


Query: 539 taaagaccgctggtagtttaggtggtggtaatggtgacattgaaatggattacacttttt 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 taaagaccgctggtagtttaggtggtggtaatggtgacattgaaatggattacacttttt 606


Query: 599 atgaacaaagaaatactctcttttatcaagatcaacaaaattcaaaatactatcaagata 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 atgaacaaagaaatactctcttttatcaagatcaacaaaattcaaaatactatcaagata 546


Query: 659 attgtgtaaacatctcatgcgatcaagaacaagaaattctaaatagttgtttatcatctt 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 attgtgtaaacatctcatgcgatcaagaacaagaaattctaaatagttgtttatcatctt 486


Query: 719 caaagaaatcaaattcaagaaaaaagaatacaaccaacgccaacatcaccgccaacacta 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 caaagaaatcaaattcaagaaaaaagaatacaaccaacgccaacatcaccgccaacacta 426


Query: 779 atgaagataatgaactattttcaaaattaaaaaagaatttaagacctttctttaagaaat 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atgaagataatgaactattttcaaaattaaaaaagaatttaagacctttctttaagaaat 366


Query: 839 catttttattggatagtttattcactcaagagacagagaaagagattttatcattcatca 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 catttttattggatagtttattcactcaagagacagagaaagagattttatcattcatca 306


Query: 899 gaggtgatgattgcttttatagaaatactccatccaatacaatggagtttaatcaagaga 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gaggtgatgattgcttttatagaaatactccatccaatacaatggagtttaatcaagaga 246


Query: 959 acccagcaaagagattaattatccatggtttagcctcttactattcattacaaagtagaa 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 acccagcaaagagattaattatccatggtttagcctcttactattcattacaaagtagaa 186


Query: 1019 gtcataccaacaataatggtaaacgtattcttgtccttagaaaacaaaaatcaatgccac 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gtcataccaacaataatggtaaacgtattcttgtccttagaaaacaaaaatcaatgccac 126


Query: 1079 ctcttcctgaacaaacaatcgttcaatatttaatctctgaatcaaagaaacaagctatcc 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ctcttcctgaacaaacaatcgttcaatatttaatctctgaatcaaagaaacaagctatcc 66


Query: 1139 aggttcatcaagttc 1153
|||||||||||||||
Sbjct: 65 aggttcatcaagttc 51

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,449,130,156
Number of extensions: 98105953
Number of successful extensions: 9161900
Number of sequences better than 10.0: 188
Length of query: 1298
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1274
Effective length of database: 96,409,374,237
Effective search space: 122825542777938
Effective search space used: 122825542777938
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.16
Homology vs Protein
Query= Contig-U15400-1 (Contig-U15400-1Q) /CSM_Contig/Contig-U15400-1Q.Seq.d
(1298 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC080131_58(AC080131|pid:none) Trypanosoma brucei chromosome 4 c... 42 0.037
AC146865_13(AC146865|pid:none) Medicago truncatula clone mth2-36... 40 0.14
AL035475_49(AL035475|pid:none) Plasmodium falciparum MAL4P2. &A... 39 0.41
AL133109_1(AL133109|pid:none) Homo sapiens mRNA; cDNA DKFZp566N1... 38 0.92
BC036399_1(BC036399|pid:none) Homo sapiens cyclic AMP-regulated ... 38 0.92
AK294484_1(AK294484|pid:none) Homo sapiens cDNA FLJ61232 complet... 38 0.92
BC053001_1(BC053001|pid:none) Mus musculus cyclic AMP-regulated ... 37 1.6
AK032543_1(AK032543|pid:none) Mus musculus adult male olfactory ... 37 1.6
AE014187_581(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 37 1.6
AK032417_1(AK032417|pid:none) Mus musculus adult male olfactory ... 37 1.6
(Q8C0Y6) RecName: Full=cAMP-regulated phosphoprotein 21; ... 37 1.6
AL844506_75(AL844506|pid:none) Plasmodium falciparum 3D7 chromos... 37 2.0
CP000087_297(CP000087|pid:none) Rickettsia bellii RML369-C, comp... 35 7.8

>AC080131_58(AC080131|pid:none) Trypanosoma brucei chromosome 4 clone
RPCI93-2H8, complete sequence.
Length = 486

Score = 42.4 bits (98), Expect = 0.037
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Frame = +1

Query: 865 QETEKEILSFIRGDDCFYRNTPSNTMEFNQENPAKRLIIHGLASYYSLQSRSHTNNNGKR 1044
++ E+ +FI+ D PS ++ + + RL+ HG+A+YY L S+SH +G +
Sbjct: 313 EDLEQNFTAFIKSGD------PSKSLTYRFRDGYGRLVCHGVAAYYKLVSQSHQQADGSK 366

Query: 1045 ILVL------RKQKSMPPLPEQTIVQYL 1110
V+ RK S LP+ T+ L
Sbjct: 367 TTVVSWPKRKRKNTSSLTLPKITLKSLL 394

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,606,454,835
Number of extensions: 28053692
Number of successful extensions: 90081
Number of sequences better than 10.0: 13
Number of HSP's gapped: 85768
Number of HSP's successfully gapped: 13
Length of query: 432
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 301
Effective length of database: 627,191,635
Effective search space: 188784682135
Effective search space used: 188784682135
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.30 gvh: 0.38 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.19 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: nuclear
28.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for Contig-U15400-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 2
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 2
CH (FL, L) 1
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0