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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15391-1
Contig ID Contig-U15391-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15391-1 (Contig-U15391-1Q) /CSM_Contig/Contig-U15391-1Q.Seq.d
CTCGATTTTAATTTAAAAAAAAAAAAAAAAGAGTAGTACCATAACCATAA
GCAAAACGATGACAATTACAATAGAGAATGTTATAGAATTAATAAATGGA
TTGAATGATCCAAAATTGAATAAACATTATGAAAATAAATTAGAAGAGAT
TACCAACGAAATTGGATTTGGAGTTGTATTAGCAAAGTTAGCAAGCGATA
AACAATTTGATATGGTTCATAGACAATTTTCAGGTATCCTATTAAAGAAA
TATATTAGTAAACATTGGAATGAATTTAATGATTCTCAATCTGATGAAGA
AGGTGATGATAATTTAAATGAACATGAAAAAATTCAATTACAACAAATGA
AATTACAACAACAACAACAACAACAACCAAAAGAATATAGAGTTTTAACA
AAAGAAGAAAAAACCGAAATTAAAAAATTATTATCACCATGTTTATCAGA
TCCATCTTCAAAAATTCGTACAGCAATTGCAATGTGTATTGCGAAAATTG
GAGCATATGAATGGCCACATGATTGGCCAGAATTAGTTGACGAATTAATT
GGATGTTTAAATAGAGTAAATAATAATGATACAAATAATAATAATAATAA
TGATTTATTACATGGTGTAATTAGATGTTTAGAATTATTATGTGATCCAC
AAGATGGTAATATATCAGAAGAACAAATTGAAATATTAATTAAACAAGTT
TATCCAGTATTTTCAGAGTTATTAGGTAAAGATATTGATCCAATGATTCA
TATTAGAATTATTAATGTATTTAGATCAACAGTGACTCATTTAACCTATA
TGAAGGGTGTAACCAAAGGTTTGTCAAAGGCATTATTTCCATTCATTTCA
ACATGGGTACCCATTTTTACGGGACATTTATCAAGGGTATTGGATTTAGG
TTCACCACATATCAATCATTATTTCACTATAATGTCAGCGATGGTTGAGA
TCTTCACAATGTTA
Gap no gap
Contig length 964
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 1913298
End point 1912420
Strand (PLUS/MINUS) MINUS
Number of clones 3
Number of EST 2
Link to clone list U15391
List of clone(s) 

est1=FCL-AC24F,1,570
est2=VHK381F,353,964
Translated Amino Acid sequence 
sili*KKKKKSSTITISKTMTITIENVIELINGLNDPKLNKHYENKLEEITNEIGFGVVL
AKLASDKQFDMVHRQFSGILLKKYISKHWNEFNDSQSDEEGDDNLNEHEKIQLQQMKLQQ
QQQQQPKEYRVLTKEEKTEIKKLLSPCLSDPSSKIRTAIAMCIAKIGAYEWPHDWPELVD
ELIGCLNRVNNNDTNNNNNNDLLHGVIRCLELLCDPQDGNISEEQIEILIKQVYPVFSEL
LGKDIDPMIHIRIINVFRSTVTHLTYMKGVTKGLSKALFPFISTWVPIFTGHLSRVLDLG
SPHINHYFTIMSAMVEIFTML
Translated Amino Acid sequence (All Frames) 
Frame A:
ldfnlkkkkke*yhnhkqnddnynrecyrinkwie*skie*tl*k*irrdyqrnwiwsci
skvskr*ti*ygs*tifrypikeiy**tle*i**fsi**rr***fk*t*knsittneitt
ttttttkri*sfnkrrknrn*kiiitmfirsifknsysncnvycenwsi*mat*laris*
rinwmfk*sk***yk******fitwcn*mfriim*strw*yirrtn*nin*tslssifrv
ir*ry*sndsy*ny*ci*insdsfnlyegcnqrfvkgiisihfnmgthfygtfikgigfr
fttyqslfhynvsdg*dlhnv


Frame B:
sili*KKKKKSSTITISKTMTITIENVIELINGLNDPKLNKHYENKLEEITNEIGFGVVL
AKLASDKQFDMVHRQFSGILLKKYISKHWNEFNDSQSDEEGDDNLNEHEKIQLQQMKLQQ
QQQQQPKEYRVLTKEEKTEIKKLLSPCLSDPSSKIRTAIAMCIAKIGAYEWPHDWPELVD
ELIGCLNRVNNNDTNNNNNNDLLHGVIRCLELLCDPQDGNISEEQIEILIKQVYPVFSEL
LGKDIDPMIHIRIINVFRSTVTHLTYMKGVTKGLSKALFPFISTWVPIFTGHLSRVLDLG
SPHINHYFTIMSAMVEIFTML


Frame C:
rf*fkkkkkrvvp*p*akr*qlq*rml*n**md*miqn*inimkin*krlptkldlely*
qs*qainnliwfidnfqvsy*rnilvnigmnlmilnlmkkvmii*mnmkkfnynk*nynn
nnnnnqknief*qkkkkpklknyyhhvyqihlqkfvqqlqcvlrklehmnghmigqn*lt
n*ldv*ie*iimiqiiiiimiyymv*ldv*nyyvihkmviyqknklky*lnkfiqyfqsy
*vkiliq*filellmyldqq*li*pi*rv*pkvcqrhyfhsfqhgypflrdiyqgywi*v
hhisiiisl*cqrwlrssqc
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15391-1 (Contig-U15391-1Q)
/CSM_Contig/Contig-U15391-1Q.Seq.d
         (964 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15391-1 (Contig-U15391-1Q) /CSM_Contig/Conti...   720  0.0
Contig-U15922-1 (Contig-U15922-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U11683-1 (Contig-U11683-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U16251-1 (Contig-U16251-1Q) /CSM_Contig/Conti...    36  0.097
Contig-U15789-1 (Contig-U15789-1Q) /CSM_Contig/Conti...    36  0.097
Contig-U14391-1 (Contig-U14391-1Q) /CSM_Contig/Conti...    36  0.097
Contig-U13264-1 (Contig-U13264-1Q) /CSM_Contig/Conti...    36  0.097
Contig-U10350-1 (Contig-U10350-1Q) /CSM_Contig/Conti...    36  0.097
Contig-U09733-1 (Contig-U09733-1Q) /CSM_Contig/Conti...    36  0.097
Contig-U05090-1 (Contig-U05090-1Q) /CSM_Contig/Conti...    36  0.097

>Contig-U15391-1 (Contig-U15391-1Q) /CSM_Contig/Contig-U15391-1Q.Seq.d
          Length = 964

 Score =  720 bits (363), Expect = 0.0
 Identities = 363/363 (100%)
 Strand = Plus / Plus

                                                                       
Query: 602 gatttattacatggtgtaattagatgtttagaattattatgtgatccacaagatggtaat 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gatttattacatggtgtaattagatgtttagaattattatgtgatccacaagatggtaat 661

                                                                       
Query: 662 atatcagaagaacaaattgaaatattaattaaacaagtttatccagtattttcagagtta 721
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 atatcagaagaacaaattgaaatattaattaaacaagtttatccagtattttcagagtta 721

                                                                       
Query: 722 ttaggtaaagatattgatccaatgattcatattagaattattaatgtatttagatcaaca 781
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ttaggtaaagatattgatccaatgattcatattagaattattaatgtatttagatcaaca 781

                                                                       
Query: 782 gtgactcatttaacctatatgaagggtgtaaccaaaggtttgtcaaaggcattatttcca 841
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 gtgactcatttaacctatatgaagggtgtaaccaaaggtttgtcaaaggcattatttcca 841

                                                                       
Query: 842 ttcatttcaacatgggtacccatttttacgggacatttatcaagggtattggatttaggt 901
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 ttcatttcaacatgggtacccatttttacgggacatttatcaagggtattggatttaggt 901

                                                                       
Query: 902 tcaccacatatcaatcattatttcactataatgtcagcgatggttgagatcttcacaatg 961
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 tcaccacatatcaatcattatttcactataatgtcagcgatggttgagatcttcacaatg 961

              
Query: 962 tta 964
           |||
Sbjct: 962 tta 964


 Score =  642 bits (324), Expect = 0.0
 Identities = 324/324 (100%)
 Strand = Plus / Plus

                                                                       
Query: 31  gagtagtaccataaccataagcaaaacgatgacaattacaatagagaatgttatagaatt 90
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31  gagtagtaccataaccataagcaaaacgatgacaattacaatagagaatgttatagaatt 90

                                                                       
Query: 91  aataaatggattgaatgatccaaaattgaataaacattatgaaaataaattagaagagat 150
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  aataaatggattgaatgatccaaaattgaataaacattatgaaaataaattagaagagat 150

                                                                       
Query: 151 taccaacgaaattggatttggagttgtattagcaaagttagcaagcgataaacaatttga 210
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 taccaacgaaattggatttggagttgtattagcaaagttagcaagcgataaacaatttga 210

                                                                       
Query: 211 tatggttcatagacaattttcaggtatcctattaaagaaatatattagtaaacattggaa 270
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tatggttcatagacaattttcaggtatcctattaaagaaatatattagtaaacattggaa 270

                                                                       
Query: 271 tgaatttaatgattctcaatctgatgaagaaggtgatgataatttaaatgaacatgaaaa 330
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tgaatttaatgattctcaatctgatgaagaaggtgatgataatttaaatgaacatgaaaa 330

                                   
Query: 331 aattcaattacaacaaatgaaatt 354
           ||||||||||||||||||||||||
Sbjct: 331 aattcaattacaacaaatgaaatt 354


 Score =  256 bits (129), Expect = 6e-68
 Identities = 129/129 (100%)
 Strand = Plus / Plus

                                                                       
Query: 428 ttattatcaccatgtttatcagatccatcttcaaaaattcgtacagcaattgcaatgtgt 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttattatcaccatgtttatcagatccatcttcaaaaattcgtacagcaattgcaatgtgt 487

                                                                       
Query: 488 attgcgaaaattggagcatatgaatggccacatgattggccagaattagttgacgaatta 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 attgcgaaaattggagcatatgaatggccacatgattggccagaattagttgacgaatta 547

                    
Query: 548 attggatgt 556
           |||||||||
Sbjct: 548 attggatgt 556


 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 378 caaaagaatatagagttttaac 399
           ||||||||||||||||||||||
Sbjct: 378 caaaagaatatagagttttaac 399


>Contig-U15922-1 (Contig-U15922-1Q) /CSM_Contig/Contig-U15922-1Q.Seq.d
          Length = 1420

 Score = 38.2 bits (19), Expect = 0.025
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 946 tgagatcttcacaatgtta 964
           |||||||||||||||||||
Sbjct: 1   tgagatcttcacaatgtta 19


>Contig-U11683-1 (Contig-U11683-1Q) /CSM_Contig/Contig-U11683-1Q.Seq.d
          Length = 1180

 Score = 38.2 bits (19), Expect = 0.025
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 330  aaattcaattacaacaaat 348
            |||||||||||||||||||
Sbjct: 1100 aaattcaattacaacaaat 1118


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,295
Number of Sequences: 8402
Number of extensions: 17295
Number of successful extensions: 1887
Number of sequences better than 10.0: 233
length of query: 964
length of database: 8,075,542
effective HSP length: 16
effective length of query: 948
effective length of database: 7,941,110
effective search space: 7528172280
effective search space used: 7528172280
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.25
Homology vs DNA 
Query= Contig-U15391-1 (Contig-U15391-1Q) /CSM_Contig/Contig-U15391-1Q.Seq.d
         (964 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ424212) Dictyostelium discoideum cDNA clone:ddv51b21, 5' ...   720   0.0    2
(C23849) Dictyostelium discoideum gamete cDNA, clone FCL-AC24.    565   0.0    3
(EU518937) Homo sapiens NEL-like 1 (chicken) (NELL1) gene, c...    36   0.086  2
(AC099730) Homo sapiens chromosome 11, clone RP11-48F13, com...    36   0.094  2
(AP002764) Homo sapiens genomic DNA, chromosome 11q clone:RP...    36   0.095  2
(AC091146) Homo sapiens chromosome 11, clone RP11-884J20, co...    36   0.095  2
(AL049184) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    32   0.41   11
(AW282769) LG1_290_F11.g1_A002 Light Grown 1 (LG1) Sorghum b...    38   1.2    2
(CU855937) Zebrafish DNA sequence from clone CH1073-314H17 i...    34   1.3    4
(DX929325) MUGQ_CH252P081G12T7_CP48_090 CHORI-252 Vervet Mon...    38   1.9    2
(BV047511) S212P6222FA9.T0 CZECHII/Ei Mus musculus STS genom...    46   2.4    1
(AL833799) Mouse DNA sequence from clone RP23-26L11 on chrom...    46   2.4    1
(AC152485) Dasypus novemcinctus clone VMRC5-504F10, WORKING ...    46   2.4    1
(AC152382) Dasypus novemcinctus clone VMRC5-463L17, WORKING ...    46   2.4    1
(AP010018) Lotus japonicus genomic DNA, clone: LjT41H24, TM0...    46   2.4    1
(AC229994) Zea mays chromosome 3 clone CH201-449J12; ZMMBBc0...    46   2.4    1
(AC190631) Zea mays chromosome 1 clone CH201-161J15; ZMMBBc0...    46   2.4    1
(EJ375106) 1092963738274 Global-Ocean-Sampling_GS-28-01-01-1...    46   2.4    1
(CR171710) Forward strand read from insert in 5'HPRT inserti...    46   2.4    1
(CE537953) tigr-gss-dog-17000365953515 Dog Library Canis lup...    46   2.4    1
(BZ982762) PUGDZ29TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    46   2.4    1
(AG320559) Mus musculus molossinus DNA, clone:MSMg01-106H17....    46   2.4    1
(AC164676) Bos taurus clone CH240-98E6, WORKING DRAFT SEQUEN...    44   2.8    3
(AF059266) Sminthopsis griseoventer haplotype 11-M mitochond...    32   6.4    2
(AF059265) Sminthopsis griseoventer haplotype 10-M mitochond...    32   6.4    2
(AF059264) Sminthopsis griseoventer haplotype 9-M mitochondr...    32   6.4    2
(AF059263) Sminthopsis griseoventer haplotype 1-BI mitochond...    32   6.4    2
(AF059267) Sminthopsis aitkeni mitochondrial control region,...    32   6.4    2
(ED618573) GM_WBa0012H02.f GM_WBa Glycine max genomic clone ...    40   7.0    2
(CR954167) Zebrafish DNA sequence from clone CH211-122N14 in...    44   9.6    1
(J02686) Golden Syrian Hamster PRP gene H29, encoding acidic...    44   9.6    1
(AC122381) Mus musculus BAC clone RP23-477C4 from chromosome...    44   9.6    1
(AC102908) Mus musculus chromosome 16, clone RP24-288K2, com...    44   9.6    1
(CS391615) Sequence 890 from Patent WO2006025879.                  44   9.6    1
(CS211571) Sequence 890 from Patent WO2005111246.                  44   9.6    1
(AL590311) Human DNA sequence from clone RP11-20F16 on chrom...    44   9.6    1
(AC112491) Homo sapiens 3 BAC RP11-3P17 (Roswell Park Cancer...    44   9.6    1
(AC016564) Homo sapiens chromosome 5 clone CTC-538E9, comple...    44   9.6    1
(AC156404) Bos taurus clone CH240-59B12, WORKING DRAFT SEQUE...    44   9.6    1
(AC153024) Bos taurus clone CH240-20M4, WORKING DRAFT SEQUEN...    44   9.6    1
(AC112776) Homo sapiens chromosome 3 clone RP11-20D6, *** SE...    44   9.6    1
(AC092974) Homo sapiens chromosome 3q clone RP11-412G19, WOR...    44   9.6    1
(CU466255) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.6    1
(AC180142) Strongylocentrotus purpuratus clone R3-4003M1, WO...    44   9.6    1
(AC175081) Bos taurus clone CH240-218D8, WORKING DRAFT SEQUE...    44   9.6    1
(AC169585) Bos taurus clone CH240-198A8, WORKING DRAFT SEQUE...    44   9.6    1
(AC163165) Bos taurus clone CH240-126I17, WORKING DRAFT SEQU...    44   9.6    1
(AC023276) Homo sapiens chromosome 3 clone RP11-412G19, WORK...    44   9.6    1
(AC022190) Homo sapiens clone RP11-20D6, WORKING DRAFT SEQUE...    44   9.6    1
(AC018580) Homo sapiens clone RP11-3P17, WORKING DRAFT SEQUE...    44   9.6    1
(AC008414) Homo sapiens chromosome 5 clone CTC-282B8, WORKIN...    44   9.6    1
(FH445855) CHO_OF4701xe11r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   9.6    1
(FH164765) CHO_OF3082xc07r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   9.6    1
(ET647178) JBVRJ39TR JBVR Allium cepa genomic clone JBVRG_RH...    44   9.6    1
(ET641022) JBVS289TR JBVS Allium cepa genomic clone JBVS0_S1...    44   9.6    1
(ET639666) JBVS289TF JBVS Allium cepa genomic clone JBVS0_S1...    44   9.6    1
(AQ263961) CITBI-E1-2503H18.TF CITBI-E1 Homo sapiens genomic...    44   9.6    1
(AQ001516) CIT-HSP-2290B13.TF CIT-HSP Homo sapiens genomic c...    44   9.6    1
(CZ964015) 162292 Tomato MboI BAC Library Solanum lycopersic...    44   9.6    1
(CT294029) Sus scrofa genomic clone CH242-345N1, genomic sur...    44   9.6    1
(CL201713) ZMMBBb0561N17f ZMMBBb (HindIII) Zea mays subsp. m...    44   9.6    1
(CC237688) CH261-111E16_RM1.1 CH261 Gallus gallus genomic cl...    44   9.6    1
(B57608) CIT-HSP-2010C19.TF CIT-HSP Homo sapiens genomic clo...    44   9.6    1
(AG139291) Pan troglodytes DNA, clone: PTB-153L18.F.               44   9.6    1
(AG118147) Pan troglodytes DNA, clone: PTB-126D06.F.               44   9.6    1
(AG068546) Pan troglodytes DNA, clone: PTB-058N21.R.               44   9.6    1
(EG653081) AGENCOURT_90892620 NICHD_XGC_tropInt_60 Xenopus (...    44   9.6    1
(DY386935) CL__Ea0007L22.r CL__Ea Curcuma longa cDNA clone C...    44   9.6    1
(DC218914) Plasmodium berghei strain ANKA cDNA clone:MZ00023...    44   9.6    1
(AM728351) Cucumis melo subsp. agrestis EST, clone A_35-G05-...    44   9.6    1
(BG736821) rk62h07.y1 Meloidogyne javanica egg pAMP1 v6 Chia...    44   9.6    1
(EY506676) EST_lsal_af_785952 lsalaf whole Lepeophtheirus sa...    44   9.6    1
(CP000111) Prochlorococcus marinus str. MIT 9312, complete g...    44   9.6    1

>(BJ424212) Dictyostelium discoideum cDNA clone:ddv51b21, 5' end,
           single read.
          Length = 612

 Score =  720 bits (363), Expect(2) = 0.0
 Identities = 363/363 (100%)
 Strand = Plus / Plus


Query: 602 gatttattacatggtgtaattagatgtttagaattattatgtgatccacaagatggtaat 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gatttattacatggtgtaattagatgtttagaattattatgtgatccacaagatggtaat 309


Query: 662 atatcagaagaacaaattgaaatattaattaaacaagtttatccagtattttcagagtta 721
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 atatcagaagaacaaattgaaatattaattaaacaagtttatccagtattttcagagtta 369


Query: 722 ttaggtaaagatattgatccaatgattcatattagaattattaatgtatttagatcaaca 781
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ttaggtaaagatattgatccaatgattcatattagaattattaatgtatttagatcaaca 429


Query: 782 gtgactcatttaacctatatgaagggtgtaaccaaaggtttgtcaaaggcattatttcca 841
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gtgactcatttaacctatatgaagggtgtaaccaaaggtttgtcaaaggcattatttcca 489


Query: 842 ttcatttcaacatgggtacccatttttacgggacatttatcaagggtattggatttaggt 901
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ttcatttcaacatgggtacccatttttacgggacatttatcaagggtattggatttaggt 549


Query: 902 tcaccacatatcaatcattatttcactataatgtcagcgatggttgagatcttcacaatg 961
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tcaccacatatcaatcattatttcactataatgtcagcgatggttgagatcttcacaatg 609


Query: 962 tta 964
           |||
Sbjct: 610 tta 612

 Score =  258 bits (130), Expect(2) = 0.0
 Identities = 130/130 (100%)
 Strand = Plus / Plus


Query: 428 ttattatcaccatgtttatcagatccatcttcaaaaattcgtacagcaattgcaatgtgt 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  ttattatcaccatgtttatcagatccatcttcaaaaattcgtacagcaattgcaatgtgt 135


Query: 488 attgcgaaaattggagcatatgaatggccacatgattggccagaattagttgacgaatta 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 attgcgaaaattggagcatatgaatggccacatgattggccagaattagttgacgaatta 195


Query: 548 attggatgtt 557
           ||||||||||
Sbjct: 196 attggatgtt 205

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 938,223,788
Number of extensions: 54249601
Number of successful extensions: 4355339
Number of sequences better than 10.0: 73
Length of query: 964
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 940
Effective length of database: 96,409,374,237
Effective search space: 90624811782780
Effective search space used: 90624811782780
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.16
Homology vs Protein 
Query= Contig-U15391-1 (Contig-U15391-1Q) /CSM_Contig/Contig-U15391-1Q.Seq.d
         (964 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017352_276(AE017352|pid:none) Cryptococcus neoformans var. neo...    71   6e-11
AC079829_18(AC079829|pid:none) Arabidopsis thaliana chromosome 1...    68   5e-10
AE014297_1330(AE014297|pid:none) Drosophila melanogaster chromos...    64   8e-09
BC127275_1(BC127275|pid:none) Xenopus tropicalis hypothetical pr...    60   1e-07
(Q96P70) RecName: Full=Importin-9;          Short=Imp9; AltName:...    59   3e-07
CP000588_95(CP000588|pid:none) Ostreococcus lucimarinus CCE9901 ...    59   3e-07
(Q91YE6) RecName: Full=Importin-9;          Short=Imp9; AltName:...    59   3e-07
AF273673_1(AF273673|pid:none) Mus musculus Importin9 isoform 2 (...    59   3e-07
AP008212_848(AP008212|pid:none) Oryza sativa (japonica cultivar-...    58   6e-07
BC081041_1(BC081041|pid:none) Xenopus laevis MGC81741 protein, m...    57   1e-06
CR628365_5(CR628365|pid:none) Zebrafish DNA sequence from clone ...    54   6e-06
BC059203_1(BC059203|pid:none) Danio rerio importin 9, mRNA (cDNA...    53   2e-05
AM920436_226(AM920436|pid:none) Penicillium chrysogenum Wisconsi...    47   8e-04
(Q9XZU1) RecName: Full=Exportin-2;          Short=Exp2; AltName:...    45   0.004
AE014134_2881(AE014134|pid:none) Drosophila melanogaster chromos...    45   0.004
AP006852_34(AP006852|pid:none) Candida albicans genomic DNA, chr...    45   0.004
FN357418_19(FN357418|pid:none) Schistosoma mansoni genome sequen...    43   0.014
(O15397) RecName: Full=Importin-8;          Short=Imp8; AltName:...    42   0.041
FN392319_1392(FN392319|pid:none) Pichia pastoris GS115 chromosom...    41   0.054
CR790375_2(CR790375|pid:none) Zebrafish DNA sequence from clone ...    41   0.054
CT573126_1(CT573126|pid:none) Zebrafish DNA sequence from clone ...    41   0.054
CR751229_2(CR751229|pid:none) Zebrafish DNA sequence from clone ...    41   0.054
AK053498_1(AK053498|pid:none) Mus musculus 0 day neonate eyeball...    41   0.071
AK039534_1(AK039534|pid:none) Mus musculus adult male spinal cor...    41   0.071
U77494_1(U77494|pid:none) Homo sapiens RANBP8 mRNA, complete cds.      40   0.092
CU638744_565(CU638744|pid:none) Podospora anserina genomic DNA c...    39   0.21
FN318261_1(FN318261|pid:none) Schistosoma japonicum isolate Anhu...    39   0.35
(Q9UI26) RecName: Full=Importin-11;          Short=Imp11; AltNam...    36   1.7
AK001696_1(AK001696|pid:none) Homo sapiens cDNA FLJ10834 fis, cl...    36   1.7
(Q54KC7) RecName: Full=Putative uncharacterized protein DDB_G028...    36   2.3
BC031900_1(BC031900|pid:none) Mus musculus importin 11, mRNA (cD...    36   2.3
AK044487_1(AK044487|pid:none) Mus musculus adult retina cDNA, RI...    36   2.3
BC168434_1(BC168434|pid:none) Xenopus tropicalis importin 11, mR...    36   2.3
AK087793_1(AK087793|pid:none) Mus musculus 2 days pregnant adult...    36   2.3
BC068908_1(BC068908|pid:none) Xenopus laevis hypothetical protei...    36   2.3
(Q8K2V6) RecName: Full=Importin-11;          Short=Imp11; AltNam...    36   2.3
FN392320_230(FN392320|pid:none) Pichia pastoris GS115 chromosome...    35   3.9
CR940352_345(CR940352|pid:none) Theileria annulata strain Ankara...    35   3.9
BX544884_1(BX544884|pid:none) Zebrafish DNA sequence from clone ...    35   5.1
CR380954_336(CR380954|pid:none) Candida glabrata strain CBS138 c...    35   5.1
BC074042_1(BC074042|pid:none) Danio rerio zgc:91897, mRNA (cDNA ...    35   5.1
CR954202_531(CR954202|pid:none) Ostreococcus tauri strain OTTH05...    35   5.1
CR382128_739(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...    35   5.1
AE017194_3515(AE017194|pid:none) Bacillus cereus ATCC 10987, com...    34   6.6
CP000745_1389(CP000745|pid:none) Methanococcus maripaludis C7, c...    34   6.6
AP007150_356(AP007150|pid:none) Aspergillus oryzae RIB40 genomic...    34   6.6
AM920433_259(AM920433|pid:none) Penicillium chrysogenum Wisconsi...    34   8.6
FM992694_368(FM992694|pid:none) Candida dubliniensis CD36 chromo...    34   8.6
AP006852_373(AP006852|pid:none) Candida albicans genomic DNA, ch...    34   8.6

>AE017352_276(AE017352|pid:none) Cryptococcus neoformans var.
           neoformans JEC21 chromosome 12, complete sequence.
          Length = 1033

 Score = 70.9 bits (172), Expect = 6e-11
 Identities = 68/302 (22%), Positives = 126/302 (41%), Gaps = 5/302 (1%)
 Frame = +2

Query: 74  ENVIELINGLNDPKLN--KHYENKLEEITNEIGFGVVLAKLASDKQFDMVHRQFSGILLK 247
           + V++ +     P+ N  KH E +L+++      G+ LA+L + +   +  RQ +G+LL+
Sbjct: 3   QQVLQCLQSTLSPEENVRKHAEEQLKQLFAVPEGGLSLARLLNAQDVPLFQRQMTGVLLQ 62

Query: 248 KYISKHWNEFNDSQSDEEGDDNLNEHEKIXXXXXXXXXXXXXXPKEYRVXXXXXXXXXXX 427
           +Y+++HW   +                                P E +
Sbjct: 63  QYVNQHWTPASAQ------------------------FQHPITPIEVKAQIRPLVFSG-- 96

Query: 428 XXSPCLSDPSSKIRTAIAMCIAKIGAYEWPHDWPELVDELIGCLNRVXXXXXXXXXXXXL 607
                LSDP  KIR A A  ++ I  Y+WP D+P+L+ +L+  L
Sbjct: 97  -----LSDPERKIRLASAFSLSAIARYDWPDDYPDLLPQLVNLLT---------SGSSDS 142

Query: 608 LHGVIRCLELLCDPQDGNISEEQIEILIKQVYPVFSELLG--KDIDPMIHIRIINVFRST 781
           +HG +R   ++ D     +SE+Q+  +++ + P    +L   +   P      ++VFR
Sbjct: 143 VHGGMR---VISDFVRNELSEDQLLPVVQDLLPAVLNILANPEAHSPSTRASTVHVFRQV 199

Query: 782 VTHL-TYMKGVTKGLSKALFPFISTWVPIFTGHLSRVLDLGSPHINHYFTIMSAMVEIFT 958
           V  L T  +   + +  AL    + W+  F+  LS+  D G+  +   +  +S  +EIF
Sbjct: 200 VRMLETVREEQPRAVKSALESLGAVWLDAFSQLLSQ--DAGA-EVQQNWESLSIRIEIFR 256

Query: 959 ML 964
            L
Sbjct: 257 TL 258

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,228,670,672
Number of extensions: 21205984
Number of successful extensions: 57657
Number of sequences better than 10.0: 49
Number of HSP's gapped: 57600
Number of HSP's successfully gapped: 60
Length of query: 321
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 193
Effective length of database: 636,901,312
Effective search space: 122921953216
Effective search space used: 122921953216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.77  gvh: 0.34  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for Contig-U15391-1 is cyt
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 1
FC (DIR, S) 1
FC-IC (SUB) 0