Contig-U15377-1
Contig ID Contig-U15377-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15377-1 (Contig-U15377-1Q) /CSM_Contig/Contig-U15377-1Q.Seq.d
TAATATAAAAATATTTATAAATATCCCCAATCCATCACTTCACACTCACA
CATACACATACACACTCACACATAAACAAAATACATCATTTAACACACCC
ACTCACTACGCAAAAAAAAAAAAAAAAAAAAAAACAAACTACATTTCATA
CATATAACTCTTTAAATAAATAAATAAAAAAAAAAAAAAGAAATATTTGT
TCTTAATAGAATTAAATATTTAATAATATAAAAAAAAAAAAAAAAAAAAA

Gap no gap
Contig length 250
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U15377
List of clone(s)

est1=FC-AX11Z,1,250
Translated Amino Acid sequence
NIKIFINIPNPSLHTHTYTYTLTHKQNTSFNTPTHYAKKKKKKKTNYISYI*lfk*inkk
kkkkylflielni**ykkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
*ykniykypqsitshshihihtht*tkyii*hthslrkkkkkkknklhfihitl*ink*k
kkkeifvlnrikylii*kkkkkk


Frame B:
NIKIFINIPNPSLHTHTYTYTLTHKQNTSFNTPTHYAKKKKKKKTNYISYI*lfk*inkk
kkkkylflielni**ykkkkkkk


Frame C:
i*kyl*ispihhftlthththshinkihhlthplttqkkkkkkkqttfhtynslnk*ikk
kkrnics**n*ifnnikkkkkk


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15377-1 (Contig-U15377-1Q)
/CSM_Contig/Contig-U15377-1Q.Seq.d
(250 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15377-1 (Contig-U15377-1Q) /CSM_Contig/Conti... 82 5e-16
Contig-U16588-1 (Contig-U16588-1Q) /CSM_Contig/Conti... 38 0.006
Contig-U16535-1 (Contig-U16535-1Q) /CSM_Contig/Conti... 38 0.006
Contig-U16533-1 (Contig-U16533-1Q) /CSM_Contig/Conti... 38 0.006
Contig-U16347-1 (Contig-U16347-1Q) /CSM_Contig/Conti... 38 0.006
Contig-U15897-1 (Contig-U15897-1Q) /CSM_Contig/Conti... 38 0.006
Contig-U13936-1 (Contig-U13936-1Q) /CSM_Contig/Conti... 38 0.006
Contig-U05400-1 (Contig-U05400-1Q) /CSM_Contig/Conti... 36 0.024
Contig-U15904-1 (Contig-U15904-1Q) /CSM_Contig/Conti... 34 0.095
Contig-U13225-1 (Contig-U13225-1Q) /CSM_Contig/Conti... 34 0.095

>Contig-U15377-1 (Contig-U15377-1Q) /CSM_Contig/Contig-U15377-1Q.Seq.d
Length = 250

Score = 81.8 bits (41), Expect = 5e-16
Identities = 41/41 (100%)
Strand = Plus / Plus


Query: 135 caaactacatttcatacatataactctttaaataaataaat 175
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 caaactacatttcatacatataactctttaaataaataaat 175


Score = 79.8 bits (40), Expect = 2e-15
Identities = 40/40 (100%)
Strand = Plus / Plus


Query: 190 gaaatatttgttcttaatagaattaaatatttaataatat 229
||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gaaatatttgttcttaatagaattaaatatttaataatat 229


Score = 63.9 bits (32), Expect = 1e-10
Identities = 32/32 (100%)
Strand = Plus / Plus


Query: 1 taatataaaaatatttataaatatccccaatc 32
||||||||||||||||||||||||||||||||
Sbjct: 1 taatataaaaatatttataaatatccccaatc 32


Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 97 acccactcactacgc 111
|||||||||||||||
Sbjct: 97 acccactcactacgc 111


Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 211 attaaatatttaat 224
||||||||||||||
Sbjct: 224 attaaatatttaat 211


Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 11 atatttataaatat 24
||||||||||||||
Sbjct: 24 atatttataaatat 11


>Contig-U16588-1 (Contig-U16588-1Q) /CSM_Contig/Contig-U16588-1Q.Seq.d
Length = 1834

Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 210 aattaaatatttaataata 228
|||||||||||||||||||
Sbjct: 1775 aattaaatatttaataata 1793


Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 211 attaaatatttaat 224
||||||||||||||
Sbjct: 1789 attaaatatttaat 1776


>Contig-U16535-1 (Contig-U16535-1Q) /CSM_Contig/Contig-U16535-1Q.Seq.d
Length = 2771

Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 211 attaaatatttaataatat 229
|||||||||||||||||||
Sbjct: 2626 attaaatatttaataatat 2644


Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 211 attaaatatttaat 224
||||||||||||||
Sbjct: 2639 attaaatatttaat 2626


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,182
Number of Sequences: 8402
Number of extensions: 10182
Number of successful extensions: 5174
Number of sequences better than 10.0: 402
length of query: 250
length of database: 8,075,542
effective HSP length: 16
effective length of query: 234
effective length of database: 7,941,110
effective search space: 1858219740
effective search space used: 1858219740
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 1.24
Homology vs DNA
Query= Contig-U15377-1 (Contig-U15377-1Q) /CSM_Contig/Contig-U15377-1Q.Seq.d
(250 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C25731) Dictyostelium discoideum gamete cDNA, clone FC-AX11. 82 3e-42 3
(BJ343708) Dictyostelium discoideum cDNA clone:dda16m22, 3' ... 56 6e-04 1
(DX537590) GH_MBb0055N15r GH_MBb Gossypium hirsutum genomic ... 42 0.015 2
(CW957936) TcB53.3_E11_SP6 Tribolium BAC library Tribolium c... 38 0.030 3
(EJ927706) 1093018789423 Global-Ocean-Sampling_GS-30-02-01-1... 50 0.038 1
(EJ927286) 1093018787695 Global-Ocean-Sampling_GS-30-02-01-1... 50 0.038 1
(CZ939032) 259149 Tomato EcoRI BAC Library Solanum lycopersi... 48 0.039 2
(CT737214) Pig DNA sequence from clone CH242-116N18 on chrom... 40 0.095 4
(FC607008) CAXS3043.rev CAXS Lottia gigantea from head, foot... 38 0.12 2
(AC078854) Homo sapiens 3q BAC RP11-480B17 (Roswell Park Can... 48 0.15 1
(AC044904) Homo sapiens chromosome 3 clone RP11-685P21 map 3... 48 0.15 1
(AC027224) Homo sapiens chromosome 18 clone RP11-300K10 map ... 48 0.15 1
(AA953074) oo02g01.s1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA ... 48 0.15 1
(CP000766) Rickettsia rickettsii str. Iowa, complete genome. 28 0.19 3
(CP000848) Rickettsia rickettsii str. 'Sheila Smith', comple... 28 0.19 3
(AJ404228) Saccharomyces douglasii mitochondrial tRNA gene c... 32 0.21 4
(AM637637) Entamoeba dispar GSS, clone dispar46f05.p1k. 30 0.28 4
(AE008599) Rickettsia conorii str. Malish 7, section 31 of 1... 28 0.31 3
(DW600040) CGX146-A08.x1d-t SHGC-CGX2 Gasterosteus aculeatus... 36 0.40 3
(CL016262) CH216-17L12_Sp6.1 CH216 Xenopus (Silurana) tropic... 36 0.42 2
(ER545749) 1093016173069 Global-Ocean-Sampling_GS-35-01-01-1... 34 0.43 2
(FD459992) LARVC53TR Haematobia irritans 1st Instar Larvae H... 34 0.43 3
(DC224053) Plasmodium berghei strain ANKA cDNA clone:MZ00839... 42 0.49 2
(BV260530) S235P6268FD9.T0 ItalianGreyhound Canis familiaris... 46 0.59 1
(EU626442) Gossypium raimondii clone BAC 031J10, complete se... 46 0.59 1
(U87145) Toxoplasma gondii chloroplast, complete genome. 46 0.59 1
(AC009654) Homo sapiens chromosome 15, clone RP11-82L7, comp... 46 0.59 1
(AC225406) Nomascus leucogenys leucogenys clone CH271-17G2, ... 46 0.59 1
(CV703496) TgESTzys74f11.y1 Tg COUG Tachyzoite cDNA Library ... 46 0.59 1
(CV512656) TgESTzyr12d02.y1 Tg COUG Tachyzoite cDNA Library ... 46 0.59 1
(CK733383) TgESTzyk58h07.y1 TgRH Tachyzoite FL cDNA Toxoplas... 46 0.59 1
(AM464172) Vitis vinifera contig VV78X170761.15, whole genom... 36 0.63 3
(EL905719) INIT2_5_C03.g1_A006 G5 trophont cDNA (INIT2) Icht... 32 0.66 3
(CK478641) AGENCOURT_17582587 NIH_MGC_232 Rattus norvegicus ... 34 0.73 3
(DX553327) GH_MBb0033A16r GH_MBb Gossypium hirsutum genomic ... 34 0.78 2
(AP009267) Solanum lycopersicum genomic DNA, chromosome 8, c... 38 0.83 4
(AC154530) Mus musculus BAC clone RP23-467F17 from chromosom... 38 0.83 4
(AJ831632) Zygaena cocandica minor mitochondrial tRNA-Leu (C... 32 0.87 4
(AJ831661) Zygaena truchmena esseni mitochondrial tRNA-Leu (... 32 0.88 4
(AJ831658) Zygaena storaiae storaiae mitochondrial tRNA-Leu ... 32 0.88 4
(AJ831652) Zygaena pamira pamira mitochondrial tRNA-Leu (CUN... 32 0.88 4
(BX120006) Zebrafish DNA sequence from clone DKEYP-21H4 in l... 44 1.0 4
(CR925728) Zebrafish DNA sequence from clone DKEY-96G2 in li... 38 1.0 6
(FD463775) LARW147TF Haematobia irritans 1st Instar Larvae H... 30 1.1 3
(CR848707) Zebrafish DNA sequence from clone CH211-276P5 in ... 44 1.2 3
(BH085839) RPCI-24-236L23.TJ RPCI-24 Mus musculus genomic cl... 40 1.3 2
(DQ870926) Bombus ignitus mitochondrion, complete genome. 34 1.4 5
(BH574715) BOGQR83TF BOGQ Brassica oleracea genomic clone BO... 34 1.4 2
(FD461500) LARVM20TF Haematobia irritans 1st Instar Larvae H... 30 1.4 3
(FD458820) LARV538TF Haematobia irritans 1st Instar Larvae H... 30 1.5 3
(CW532643) OP__Ba0030I19.r OP__Ba Oryza punctata genomic clo... 36 1.5 2
(DX534320) GH_MBb0041D17r GH_MBb Gossypium hirsutum genomic ... 32 1.6 2
(FF564296) TT1BA63TV Tetrahymena thermophila SB210 cDNA libr... 36 1.6 2
(BE317137) NF068E01LF1F1003 Developing leaf Medicago truncat... 38 1.6 2
(DV993949) GQ027107.B3_E01 GQ099: Mixed spruce tissues Picea... 34 1.7 2
(GE474941) GQ00610.B3.r_L22 GQ006: Cambium and phloem from m... 34 1.7 2
(DV977359) GQ00610.B3.1_L22 GQ006: Cambium and phloem from m... 34 1.7 2
(AG671133) Macaca fuscata fuscata DNA, clone: MSB2-095B15_R,... 36 1.7 2
(DX559638) GH_MBb0043F09f GH_MBb Gossypium hirsutum genomic ... 30 1.8 3
(DE245982) Trifolium pratense DNA, clone:RC0743f.ab1. 36 1.8 2
(BX571675) Zebrafish DNA sequence from clone DKEY-235D17 in ... 42 1.9 3
(BV064859) S212P6861FG11.T0 CZECHII/Ei Mus musculus STS geno... 40 1.9 2
(AM439450) Vitis vinifera contig VV78X102639.5, whole genome... 34 2.0 3
(AC069120) Homo sapiens chromosome 8, clone RP11-675F6, comp... 44 2.0 5
(CL318318) ZMMBBb0592E03r ZMMBBb (HindIII) Zea mays subsp. m... 40 2.0 2
(CT009613) Mouse DNA sequence from clone RP23-55L9 on chromo... 36 2.0 3
(DR557193) WS02610.B21_I24 WS-PP-N-A-12 Picea glauca cDNA cl... 34 2.1 2
(DJ386597) Diagnosis of Diseases Associated with Metastasis. 38 2.1 2
(AX345554) Sequence 625 from Patent WO0200928. 38 2.1 2
(AX344650) Sequence 75 from Patent WO0200927. 38 2.1 2
(AX281393) Sequence 57 from Patent WO0177376. 38 2.1 2
(AM472684) Vitis vinifera contig VV78X120584.2, whole genome... 36 2.2 3
(CU896661) Zebrafish DNA sequence from clone CH73-272O12 in ... 44 2.3 1
(CR376858) Zebrafish DNA sequence from clone CH211-87A2 in l... 44 2.3 1
(BX511146) Zebrafish DNA sequence from clone DKEY-150K1 in l... 44 2.3 1
(AL732632) Zebrafish DNA sequence from clone CH211-140K5 in ... 44 2.3 1
(AC134245) Mus musculus BAC clone RP23-144I22 from chromosom... 44 2.3 1
(AC118595) Mus musculus chromosome 3, clone RP24-481I21, com... 44 2.3 1
(AC110382) Mus musculus BAC clone RP24-555I16 from chromosom... 44 2.3 1
(AC196222) MACACA MULATTA BAC clone CH250-65M9 from chromoso... 44 2.3 1
(DJ386706) Diagnosis of Diseases Associated with Metastasis. 44 2.3 1
(AX281502) Sequence 166 from Patent WO0177376. 44 2.3 1
(CU151847) Pig DNA sequence from clone CH242-183P19 on chrom... 44 2.3 1
(AP003109) Homo sapiens genomic DNA, chromosome 11q, clone:R... 44 2.3 1
(AL034419) Human DNA sequence from clone RP5-1108D11 on chro... 44 2.3 1
(AF411849) Homo sapiens USH3 region, partial sequence. 44 2.3 1
(AC209541) Homo sapiens FOSMID clone ABC9-43849500A21 from c... 44 2.3 1
(AC087623) Homo sapiens chromosome 8, clone RP11-350N15, com... 44 2.3 1
(AC078816) Homo sapiens 3 BAC RP11-600P18 (Roswell Park Canc... 44 2.3 1
(CT573107) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 2.3 1
(CR954265) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 2.3 1
(CR626879) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 2.3 1
(AC169094) Bos taurus clone CH240-226K6, WORKING DRAFT SEQUE... 44 2.3 1
(AC164853) Bos taurus clone CH240-151M23, *** SEQUENCING IN ... 44 2.3 1
(AC024245) Homo sapiens chromosome 11 clone RP11-604K5, WORK... 44 2.3 1
(AC019307) Homo sapiens chromosome 8 clone RP11-359P11 map 8... 44 2.3 1
(AC011237) Homo sapiens chromosome 8 clone RP11-350N15, WORK... 44 2.3 1
(BH458549) BOGPH82TR BOGP Brassica oleracea genomic clone BO... 44 2.3 1
(ER961141) CH260-112M09_T7 CHORI-260 Meleagris gallopavo gen... 44 2.3 1
(DX553559) GH_MBb0046A01r GH_MBb Gossypium hirsutum genomic ... 44 2.3 1
(DU400971) 1098448231234 CHORI-243 Ovis aries genomic clone ... 44 2.3 1
(DU318852) 1098421230158 CHORI-243 Ovis aries genomic clone ... 44 2.3 1
(DU108737) JBnY039D01R Brassica napus BAC library JBnY Brass... 44 2.3 1
(BH738764) BOMHD10TR BO_2_3_KB Brassica oleracea genomic clo... 44 2.3 1
(EC819430) SME00001532 esmbsro2 Sawyeria marylandensis cDNA,... 44 2.3 1
(FG282229) gmnlskic_0007f11.pDNRm13r Gadus morhua spleen and... 44 2.3 1
(FG273453) gmnlla_0047m18.sp6 Gadus morhua larvae library Ga... 44 2.3 1
(CP000524) Bartonella bacilliformis KC583, complete genome. 44 2.3 1
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ... 36 2.4 6
(CT566743) Rainbow trout liver SSH library from warm, cold a... 42 2.5 2
(AJ011856) Saccharomyces cerevisiae complete mitochondrial g... 30 2.7 5
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co... 30 2.7 5
(AJ858793) Brassica rapa subsp. pekinensis GSS, clone KBrH05... 36 2.8 2
(DJ386566) Diagnosis of Diseases Associated with Metastasis. 42 3.0 2
(AX345255) Sequence 326 from Patent WO0200928. 42 3.0 2
(AX281362) Sequence 26 from Patent WO0177376. 42 3.0 2
(EU009253) Photuris aff. lucicrescens KSH1 16S ribosomal RNA... 28 3.3 4
(EU358900) Toxoptera aurantii 12S small subunit ribosomal RN... 34 3.4 2
(FB571359) Sequence 226 from Patent EP1865317. 36 3.8 5
(ET646998) JBVRH43TR JBVR Allium cepa genomic clone JBVRG_RH... 34 3.8 3
(AJ132901) Drosophila guanche mitochondrial A+T-rich region. 32 3.9 3
(AL161428) Human DNA sequence from clone RP11-29C8 on chromo... 36 4.0 2
(DQ366715) Uncultured Prochlorococcus marinus clone ASNC2259... 38 4.1 2
(FD461284) LARVK87TR Haematobia irritans 1st Instar Larvae H... 30 4.3 3
(CU929813) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 30 4.3 2
(BX537123) Zebrafish DNA sequence from clone CH211-202M24 in... 34 4.4 2
(CT025586) Mouse DNA sequence from clone RP23-433J21 on chro... 34 4.4 2
(AC154622) Mus musculus BAC clone RP23-325D11 from chromosom... 34 4.4 2
(AE001373) Plasmodium falciparum 3D7 chromosome 2 section 10... 30 4.4 4
(CU672250) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 30 4.4 2
(DJ051092) HIGH EFFICIENCY GENE TRANSFER AND EXPRESSION IN M... 36 4.4 2
(DI106854) HIGH EFFICIENCY GENE TRANSFER AND EXPRESSION IN M... 36 4.4 2
(CS083950) Sequence 133 from Patent WO2005040377. 36 4.4 2
(AP003642) Mus musculus genomic DNA, chromosome 16q clone:RP... 34 4.4 2
(DQ821119) Angiopteris evecta chloroplast, complete genome. 34 4.4 2
(AF321227) Tribolium castaneum Ftz (ftz), Scr (scr), Dfd (df... 34 4.5 2
(CX525048) s13dNF19H08AT076_478730 Aphid-Infected Shoots Med... 38 4.6 2
(BI501777) rm04h10.y1 Meloidogyne arenaria egg pAMP1 v1 Chia... 34 4.7 2
(CU856076) H.melpomene DNA sequence from clone AEHM-7E22. 36 4.7 4
(CU929205) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 4.8 2
(AC011836) Homo sapiens chromosome 11 clone RP11-151J24 map ... 36 4.9 4
(AC185134) Nasonia vitripennis BAC NV_Bb-85B05 (Clemson Uni... 42 4.9 5
(AC100726) Mus musculus chromosome 19, clone RP24-245B11, co... 38 5.0 3
(DX522512) GH_MBb0051O14f GH_MBb Gossypium hirsutum genomic ... 36 5.0 3
(BV270395) S235P675RB12.T0 ItalianGreyhound Canis familiaris... 38 5.2 2
(ET893467) CHO_OF251xb16r1.ab1 CHO_OF Nicotiana tabacum geno... 30 5.3 3
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 34 5.6 6
(CK241057) rx24g09.y1 Meloidogyne paranaensis egg SL1 pGEM M... 34 5.8 2
(ET751467) CHO_OF308xb16r1.ab1 CHO_OF Nicotiana tabacum geno... 32 5.9 2
(FH678534) CHO_OF5049xl13f1.ab1 CHO_OF5 Nicotiana tabacum ge... 40 5.9 2
(AJ331598) Homo sapiens genomic sequence surrounding NotI si... 32 5.9 2
(BD452775) Diagnosis of Diseases Associated with tumor suppr... 32 5.9 4
(AX346497) Sequence 1568 from Patent WO0200928. 32 5.9 4
(AX251254) Sequence 222 from Patent WO0168912. 32 5.9 4
(FH738994) CHO_OF5008xc14f1.ab1 CHO_OF5 Nicotiana tabacum ge... 36 6.0 2
(EK031352) 1092955410259 Global-Ocean-Sampling_GS-31-01-01-1... 40 6.0 2
(BH072443) RPCI-24-228B14.TJ RPCI-24 Mus musculus genomic cl... 34 6.0 2
(AF267914) Saccharomyces bayanus tRNA-Thr gene, partial sequ... 30 6.0 4
(EI486407) PV_GBa0100N18.r PV_GBa Phaseolus vulgaris genomic... 34 6.2 2
(CT573305) Zebrafish DNA sequence from clone CH73-247D4 in l... 38 6.2 4
(AY171066) Dictyostelium discoideum extrachromosomal palindr... 36 6.5 5
(CT807508) Paramecium tetraurelia 5-PRIME EST from clone LK0... 36 6.5 2
(AM613270) Entamoeba invadens IP1 GSS, clone inv035a06.p1k. 38 6.5 2
(DX534104) GH_MBb0039O15f GH_MBb Gossypium hirsutum genomic ... 28 6.5 4
(EJ754559) 1092963067105 Global-Ocean-Sampling_GS-30-02-01-1... 36 6.6 2
(DB914229) Idiosepius paradoxus cDNA, clone:Ip_aB_015_M04, 5... 30 6.6 3
(CV830823) ID0ACC16CD10RM1 ID0ACC Acyrthosiphon pisum cDNA c... 40 6.6 2
(BX247902) Zebrafish DNA sequence from clone CH211-231D21 in... 34 6.7 4
(ET923054) CHO_OF463xm04r1.ab1 CHO_OF Nicotiana tabacum geno... 40 6.7 2
(CE697273) tigr-gss-dog-17000368687482 Dog Library Canis lup... 28 6.8 3
(ER300872) 1092343681969 Global-Ocean-Sampling_GS-34-01-01-1... 34 6.9 2
(BX178056) Danio rerio genomic clone DKEY-183F10, genomic su... 38 7.0 2
(AM471017) Vitis vinifera contig VV78X012191.3, whole genome... 34 7.0 3
(AL591421) Human DNA sequence from clone RP11-394N20 on chro... 34 7.1 3
(EK286052) 1095462313640 Global-Ocean-Sampling_GS-31-01-01-1... 36 7.1 2
(EJ773494) 1092978700356 Global-Ocean-Sampling_GS-30-02-01-1... 36 7.1 2
(AX344665) Sequence 90 from Patent WO0200927. 40 7.3 3
(AE001428) Plasmodium falciparum 3D7 chromosome 2 section 65... 34 7.4 3
(A21622) Dictoselium plasmid Ddp2 REp gene. 36 7.5 3
(X51478) Dictyostelium discoideum Ddp2 plasmid DNA containin... 36 7.5 3
(BX004781) Zebrafish DNA sequence from clone CH211-149G8 in ... 34 7.5 4
(EJ717235) 1092959427787 Global-Ocean-Sampling_GS-30-02-01-1... 38 7.7 2
(EK368634) 1095469407641 Global-Ocean-Sampling_GS-31-01-01-1... 36 7.7 2
(AB265408) Xandrames dholaria gene for 16S rRNA, partial seq... 40 7.8 2
(AM484411) Vitis vinifera contig VV78X007785.6, whole genome... 32 7.8 3
(EV830552) FMMCD60TF Tetrahymena thermophila SB210 cDNA libr... 30 7.8 3
(AB265400) Parapercnia giraffata gene for 16S rRNA, partial ... 36 7.8 2
(CX579495) TTE00036331 Amplicon Express - Conjugative Form T... 30 8.0 3
(AC105254) Homo sapiens BAC clone RP11-647P12 from 4, comple... 34 8.2 5
(AX345917) Sequence 988 from Patent WO0200928. 38 8.2 2
(CR846094) Zebrafish DNA sequence from clone CH211-264F16 in... 40 8.2 4
(CS374512) Sequence 615 from Patent WO2006034879. 32 8.3 3
(CS374240) Sequence 343 from Patent WO2006034879. 32 8.3 3
(EX649204) 256725957 Pea aphid whole body normalized full le... 34 8.4 3
(FF562887) TT1B121TV Tetrahymena thermophila SB210 cDNA libr... 30 8.4 3
(AY230035) Schoenus paludosus KW9858 chloroplast tRNA-Leu (t... 32 8.5 2
(CX579939) TTE00029377 Amplicon Express - Conjugative Form T... 30 8.5 3
(CX583117) TTE00032882 Amplicon Express - Conjugative Form T... 30 8.6 3
(AX346895) Sequence 1966 from Patent WO0200928. 32 8.6 4
(ED703949) GM_WBb0047N16.r GM_WBb Glycine max genomic clone ... 32 8.9 3
(AQ935048) CpG2305A CpIOWAgDNA1 Cryptosporidium parvum genom... 30 8.9 3
(CU457798) Zebrafish DNA sequence from clone DKEY-48K21 in l... 42 9.2 1
(CR925720) Zebrafish DNA sequence from clone DKEY-196B15 in ... 42 9.2 1
(CR854927) Zebrafish DNA sequence from clone DKEY-40M6 in li... 42 9.2 1
(CR382297) Zebrafish DNA sequence from clone CH211-195D9 in ... 42 9.2 1
(AL928660) Zebrafish DNA sequence from clone CH211-257L15. 42 9.2 1
(AC145805) Xenopus (Silurana) tropicalis clone CH216-85O8, c... 42 9.2 1
(AC163899) Mus musculus chromosome 1, clone RP24-383F13, com... 42 9.2 1
(AC116420) Mus musculus chromosome 1, clone RP24-141B16, com... 42 9.2 1
(AC107789) Mus musculus chromosome 1, clone RP23-409K18, com... 42 9.2 1
(AC102658) Mus musculus chromosome 1, clone RP23-82B23, comp... 42 9.2 1
(AC157763) Pan troglodytes BAC clone CH251-340C15 from chrom... 42 9.2 1
(AC157217) Pan troglodytes BAC clone CH251-305B5 from chromo... 42 9.2 1
(DQ304783) Vitex negundo haplotype 3 PsbA (psbA) gene, parti... 42 9.2 1
(DQ304781) Vitex negundo haplotype 1 PsbA (psbA) gene, parti... 42 9.2 1
(AC216914) Populus trichocarpa clone POP036-E01, complete se... 42 9.2 1
(DD010736) Diagnosis of known genetic Parameters within the ... 42 9.2 1
(AX344573) Sequence 24 from Patent WO0200932. 42 9.2 1
(AX344563) Sequence 14 from Patent WO0200932. 42 9.2 1
(AC189728) Canis Familiaris, clone XX-424C17, complete seque... 42 9.2 1
(AM910993) Plasmodium knowlesi strain H chromosome 11, compl... 42 9.2 1
(AJ841367) Exora obsoleta mitochondrial partial 16S rRNA gen... 42 9.2 1
(AC092669) Homo sapiens BAC clone RP11-554F14 from 2, comple... 42 9.2 1
(AC023449) Homo sapiens chromosome 15, clone RP11-345J18, co... 42 9.2 1
(AC157808) Mus musculus chromosome 1 clone RP24-367J6 map 1,... 42 9.2 1
(AC133977) Rattus norvegicus clone CH230-10G16, *** SEQUENCI... 42 9.2 1
(AC128882) Rattus norvegicus clone CH230-32D7, WORKING DRAFT... 42 9.2 1
(AC128881) Rattus norvegicus clone CH230-42F23, *** SEQUENCI... 42 9.2 1
(AC113884) Rattus norvegicus clone CH230-335J23, WORKING DRA... 42 9.2 1
(CT573307) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 9.2 1
(CR940353) Theileria annulata genomic DNA chromosome 4. 42 9.2 1
(AC230635) Bos taurus clone CH240-502N20, WORKING DRAFT SEQU... 42 9.2 1
(AC217093) Oryctolagus cuniculus clone LB1-226B18, WORKING D... 42 9.2 1
(AC195716) Ornithorhynchus anatinus clone OA_Bb-183O22, WORK... 42 9.2 1
(AC191639) Zea mays chromosome 7 clone CH201-42K21; ZMMBBc00... 42 9.2 1
(AC185108) Zea mays chromosome 7 clone CH201-548E6; ZMMBBc05... 42 9.2 1
(AC176206) Strongylocentrotus purpuratus clone R3-3063H12, W... 42 9.2 1
(AC173413) Bos taurus clone CH240-307P19, WORKING DRAFT SEQU... 42 9.2 1
(AC020639) Homo sapiens chromosome 3 clone RP11-32L10, WORKI... 42 9.2 1
(FH395328) CHO_OF4296xg24r2.ab1 CHO_OF4 Nicotiana tabacum ge... 42 9.2 1
(FH395278) CHO_OF4296xg24r1.ab1 CHO_OF4 Nicotiana tabacum ge... 42 9.2 1
(FH395174) CHO_OF4296xg24f1.ab1 CHO_OF4 Nicotiana tabacum ge... 42 9.2 1
(EK058600) 1092960053497 Global-Ocean-Sampling_GS-31-01-01-1... 42 9.2 1
(DX842945) ZMMBLe0006D07.r ZMMBLe Zea mays genomic clone ZMM... 42 9.2 1
(DX572747) Phaseolus-Bat-7_01_J23.F Phaseolus-Bat-7 Phaseolu... 42 9.2 1
(DU197885) 1098553491765 CHORI-243 Ovis aries genomic clone ... 42 9.2 1
(DU135820) OG_ABa0009I21.f OG_ABa Oryza granulata genomic cl... 42 9.2 1
(DE585344) Bombyx mori genomic DNA, Fosmid clone:GBMFno236_o... 42 9.2 1
(DE304005) Bombyx mori genomic DNA, BAC clone:BES_066_A13. 42 9.2 1
(DE290321) Bombyx mori genomic DNA, BAC clone:BES_022_N10. 42 9.2 1
(DE290300) Bombyx mori genomic DNA, BAC clone:BES_022_M10. 42 9.2 1
(CZ581263) OA_BBa0179B18.r OA_BBa Oryza alta genomic clone O... 42 9.2 1
(CW996244) OA_BBa0084K02.r OA_BBa Oryza alta genomic clone O... 42 9.2 1
(CW464935) fsbb001f215h05f0 Sorghum methylation filtered lib... 42 9.2 1
(CW278328) 104_752_11406492_116_35422_036 Sorghum methylatio... 42 9.2 1
(CW145374) 104_537_11138432_148_34971_018 Sorghum methylatio... 42 9.2 1
(CW145373) 104_537_11138432_116_34975_018 Sorghum methylatio... 42 9.2 1
(CU123652) Equus caballus GSS, BAC clone CH241-238E12, SP6 e... 42 9.2 1
(CR510958) mth4-22P9RM4 BAC end, cultivar Jemalong A17 of Me... 42 9.2 1
(AG913069) Drosophila auraria DNA, clone: DAB1-008F24.R.fa, ... 42 9.2 1
(CL180072) 104_389_10895743_116_31908_271 Sorghum methylatio... 42 9.2 1
(CE200434) tigr-gss-dog-17000372220993 Dog Library Canis lup... 42 9.2 1
(BZ078484) lkv33e11.b1 B.oleracea002 Brassica oleracea genom... 42 9.2 1
(BX157232) Danio rerio genomic clone DKEY-123P12, genomic su... 42 9.2 1
(BX130048) Danio rerio genomic clone DKEY-90C8, genomic surv... 42 9.2 1
(BH916344) 3526_1_51_1_H01.x_1 3526 - RescueMu Grid K Zea ma... 42 9.2 1
(AG257261) Lotus japonicus DNA, clone:LjT43k08_not. 42 9.2 1
(DV779418) Hw_Fat_41_050806_A09 Bos taurus CF-24-HW fat cDNA... 42 9.2 1
(DR103655) JHU040H08L737 Canine cardiovascular system biased... 42 9.2 1
(DB765099) Apis mellifera head cDNA, RIKEN full-length enric... 42 9.2 1
(BG394730) 602456692F1 NIH_MGC_16 Homo sapiens cDNA clone IM... 42 9.2 1
(BF885138) MR4-TN0114-041000-204-d10 TN0114 Homo sapiens cDN... 42 9.2 1
(BE962150) 601655051R1 NIH_MGC_65 Homo sapiens cDNA clone IM... 42 9.2 1
(BB974258) Plasmodium berghei str. ANKA cDNA clone: OK004057... 42 9.2 1
(FD345577) CBPN25565.g1 CBPN: Subtracted channel catfish cDN... 42 9.2 1
(FD331156) CBPN16054.g1 CBPN: Subtracted channel catfish cDN... 42 9.2 1
(FC841393) CBHN1399.rev CBHN Metridium senile tentacle Metri... 42 9.2 1
(EV843545) TT1EV12TH Tetrahymena thermophila SB210 cDNA libr... 42 9.2 1
(ES759025) C20L_50_G06_E002.g1 USDA-Tifton Peanut Library C2... 42 9.2 1
(CP000743) Methanococcus aeolicus Nankai-3, complete genome. 42 9.2 1
(CP000302) Shewanella denitrificans OS217, complete genome. 42 9.2 1
(EV830419) TT1CX94TV Tetrahymena thermophila SB210 cDNA libr... 30 9.2 3
(CT485998) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 9.2 4
(CC240561) CH261-162O21_Sp6.1 CH261 Gallus gallus genomic cl... 40 9.3 2
(EV832260) FTSC861TF Tetrahymena thermophila SB210 cDNA libr... 30 9.3 3
(CX585057) TTE00019465 Amplicon Express - Conjugative Form T... 30 9.5 3
(AC144636) Artibeus jamaicensis clone 1A13, complete sequence. 36 9.5 4
(CU550665) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 9.6 5
(CX586259) TTE00033404 Amplicon Express - Conjugative Form T... 30 9.7 3
(AF177132) Anomoia purmunda 16S ribosomal RNA gene, partial ... 36 9.8 2

>(C25731) Dictyostelium discoideum gamete cDNA, clone FC-AX11.
Length = 250

Score = 81.8 bits (41), Expect(3) = 3e-42
Identities = 41/41 (100%)
Strand = Plus / Plus


Query: 135 caaactacatttcatacatataactctttaaataaataaat 175
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 caaactacatttcatacatataactctttaaataaataaat 175

Score = 79.8 bits (40), Expect(3) = 3e-42
Identities = 40/40 (100%)
Strand = Plus / Plus


Query: 190 gaaatatttgttcttaatagaattaaatatttaataatat 229
||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gaaatatttgttcttaatagaattaaatatttaataatat 229

Score = 63.9 bits (32), Expect(3) = 3e-42
Identities = 32/32 (100%)
Strand = Plus / Plus


Query: 1 taatataaaaatatttataaatatccccaatc 32
||||||||||||||||||||||||||||||||
Sbjct: 1 taatataaaaatatttataaatatccccaatc 32

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 225,573,050
Number of extensions: 23411159
Number of successful extensions: 9731706
Number of sequences better than 10.0: 300
Length of query: 250
Length of database: 98,766,808,389
Length adjustment: 23
Effective length of query: 227
Effective length of database: 96,507,600,660
Effective search space: 21907225349820
Effective search space used: 21907225349820
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 7.16
Homology vs Protein
Query= Contig-U15377-1 (Contig-U15377-1Q) /CSM_Contig/Contig-U15377-1Q.Seq.d
(250 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 187,129,877
Number of extensions: 1812262
Number of successful extensions: 1166
Number of sequences better than 10.0: 0
Number of HSP's gapped: 1166
Number of HSP's successfully gapped: 0
Length of query: 83
Length of database: 1,051,180,864
Length adjustment: 53
Effective length of query: 30
Effective length of database: 879,643,237
Effective search space: 26389297110
Effective search space used: 26389297110
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 27 (15.0 bits)

PSORT

psg: 0.79 gvh: 0.22 alm: 0.60 top: 0.53 tms: 0.00 mit: 0.52 mip: 0.00
nuc: 0.16 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: mitochondrial
20.0 %: cytoplasmic
20.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: peroxisomal
4.0 %: endoplasmic reticulum

>> prediction for Contig-U15377-1 is mit

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0