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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U02999-1
Contig ID Contig-U02999-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U02999-1 (Contig-U02999-1Q) /CSM_Contig/Contig-U02999-1Q.Seq.d
ATTTCATCAAAACAATGAAATTAATTTAAAATTGAAGAGAATAAAGAGAA
GTGCAAAATCATCATCATCATCATTCTTTATTATTCATCATTATTATTAT
TATTATAAGTTATGTCTGATATAATAAAATGTATATTTTATAGTGAATTT
CATAATATATATGGTACAAAAATTTTACATCAATATCCTGAAGGTTTTGT
TTCAAATGAAGTATTTGAAGGTTTTGCAGAATATATTATACCAAAACCAA
AATTATGTGGAAAAATTATAACATTAACAGCATTTGATTATAAAATTTTA
GGATATCCAATATTAATGCAAGATGTAAAATATCATAGAAATGCATTATT
ATTTAATCTTTGTTTTGTTTTTGATAAAAGTACAGATACAACAAATTATA
ATCAAATCGTTAGAAAATTAGGCACAATATTAAGAACTTTAGAAAAGGAA
ACAGAATATTTATTTAATCAATCAAAAGAAATTGGATTAAAAGATCAACC
AGATTTATCAAAAATATTAGAAACATTATATATTGAATTGAATACATATG
GTGAAAGTACATTTACAGTTGACGATGCAAATACAATTAATGTTAAACTA
TTGAGTAGACCAGATGAACCACCAGAGATATTACCACACCAAGTACCGGT
GTTAGTTGAAGAGATTGATACAACCAATGATTCAGAATGGGATTTAACTG
TATTACAAATTCTACCCTACATTGATGGTATCAATTATGTTGCAAGAATA
TCGAAATTGACAGAAATCGATATCAACCTCGTCAGTAGCTGTGTCCAACA
TTTGGTTTACTACGGTATCGTTAAGATGGTAGACATTTTTCAATACTCAA
ATATTTATAATCCAACACCTAAAATTAGAAAACTTGCAAGTAATTTAGAC
ATGCAAAGAGAGTGTCAAAGATATATAACCATATCAGGCGCTACGCCATG
CTCATTCGAATTCATATTCTCCCTCTATTCATCGTTAAGTATCGATACAA
CATTTAGAGAATATTGTTTGGAGAATTCATTAACAAGTTGGGGTATTGAT
GAACGTGCTTTCATTATGTTTGGTGTTATTAATGATTTCCTAAGAAGAAA
ACAAAGATATCCACTCTTAACCAATCTTCAATCATTAGATTCTGTTACCA
CCATCTCATAAAAAACATCTTTTAAATGGTACTAAAAATTATGATGAAAT
TTGTTGTATCCTTTCAATTGGTGTTGAAGCTGTTGAAAAATTATTATTCG
AAATTGCACATCCAGATTCTTTTATTGTAATTTTAAAATAAAAAA
Gap no gap
Contig length 1295
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 140055
End point 141350
Strand (PLUS/MINUS) PLUS
Number of clones 5
Number of EST 8
Link to clone list U02999
List of clone(s) 

est1=CFE478F,1,560
est2=SFD530E,6,1286
est3=AFN746F,7,594
est4=AFO214E,7,1232
est5=SLF378F,39,289
est6=CFE478Z,715,1201
est7=SLF378Z,754,1295
est8=AFN746Z,1062,1185
Translated Amino Acid sequence 
isskq*n*fkieenkekckiiiiiilyysslllll*VMSDIIKCIFYSEFHNIYGTKILH
QYPEGFVSNEVFEGFAEYIIPKPKLCGKIITLTAFDYKILGYPILMQDVKYHRNALLFNL
CFVFDKSTDTTNYNQIVRKLGTILRTLEKETEYLFNQSKEIGLKDQPDLSKILETLYIEL
NTYGESTFTVDDANTINVKLLSRPDEPPEILPHQVPVLVEEIDTTNDSEWDLTVLQILPY
IDGINYVARISKLTEIDINLVSSCVQHLVYYGIVKMVDIFQYSNIYNPTPKIRKLASNLD
MQRECQRYITISGATPCSFEFIFSLYSSLSIDTTFREYCLENSLTSWGIDERAFIMFGVI
NDFLRRKQRYPLLTNLQSLDSVTTIS*ktsfkwy*kl**nllypfnwc*sc*kiiirnct
srffycnfkik
Translated Amino Acid sequence (All Frames) 
Frame A:
isskq*n*fkieenkekckiiiiiilyysslllll*VMSDIIKCIFYSEFHNIYGTKILH
QYPEGFVSNEVFEGFAEYIIPKPKLCGKIITLTAFDYKILGYPILMQDVKYHRNALLFNL
CFVFDKSTDTTNYNQIVRKLGTILRTLEKETEYLFNQSKEIGLKDQPDLSKILETLYIEL
NTYGESTFTVDDANTINVKLLSRPDEPPEILPHQVPVLVEEIDTTNDSEWDLTVLQILPY
IDGINYVARISKLTEIDINLVSSCVQHLVYYGIVKMVDIFQYSNIYNPTPKIRKLASNLD
MQRECQRYITISGATPCSFEFIFSLYSSLSIDTTFREYCLENSLTSWGIDERAFIMFGVI
NDFLRRKQRYPLLTNLQSLDSVTTIS*ktsfkwy*kl**nllypfnwc*sc*kiiirnct
srffycnfkik


Frame B:
fhqnneinlklkrikrsaksssssffiihhyyyyyklcli**nvyfivnfiiymvqkfyi
nilkvlfqmkylkvlqnilyqnqnyvekl*h*qhliikf*diqy*ckm*niiemhyylif
vlflikvqiqqiiikslen*aqy*el*krkqniylinqkkld*kinqiyqky*khyiln*
ihmvkvhlqltmqiqlmlny*vdqmnhqryyhtkyrc*lkrliqpmiqngi*lyykfypt
lmvsimlqeyrn*qksistssvavsniwfttvslrw*tffntqifiiqhlklenlqvi*t
ckesvkdi*pyqalrhahsnsyspsihr*vsiqhlenivwrih*qvgvlmnvlslclvll
mis*eenkdihs*pifnh*illppshkkhllngtknydeiccilsigveavekllfeiah
pdsfivilk*k


Frame C:
fiktmkli*n*re*revqnhhhhhsllfiiiiiiisyv*ynkmyil**is*yiwyknfts
is*rfcfk*si*rfcriyytktkimwknyninsi*l*nfrisninarckis*kciii*sl
fcf**kyrynkl*snr*kirhniknfrkgnrifi*sikrnwikrstrfiknirniiy*ie
yiw*kyiys*rckyn*c*tie*tr*ttrdittpstgvs*rd*ynq*frmgfncitnstlh
*wyqlccknieidrnryqprq*lcptfgllryr*dgrhfsilkyl*snt*n*ktck*frh
akrvskiynhirryamlirihilplfivkyryni*rilfgefinklgy**tcfhyvwcy*
*fpkkktkistlnqssiirfcyhhliknif*mvlkimmkfvvsfqlvlkllknyysklhi
qilll*f*nkk
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U02999-1 (Contig-U02999-1Q)
/CSM_Contig/Contig-U02999-1Q.Seq.d
         (1295 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U02999-1 (Contig-U02999-1Q) /CSM_Contig/Conti...  2357  0.0
Contig-U10338-1 (Contig-U10338-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U04577-1 (Contig-U04577-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U14165-1 (Contig-U14165-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U01565-1 (Contig-U01565-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U14517-1 (Contig-U14517-1Q) /CSM_Contig/Conti...    36  0.092
Contig-U13902-1 (Contig-U13902-1Q) /CSM_Contig/Conti...    36  0.092
Contig-U13891-1 (Contig-U13891-1Q) /CSM_Contig/Conti...    36  0.092
Contig-U13850-1 (Contig-U13850-1Q) /CSM_Contig/Conti...    36  0.092
Contig-U11930-1 (Contig-U11930-1Q) /CSM_Contig/Conti...    36  0.092

>Contig-U02999-1 (Contig-U02999-1Q) /CSM_Contig/Contig-U02999-1Q.Seq.d
          Length = 1295

 Score = 2357 bits (1189), Expect = 0.0
 Identities = 1189/1189 (100%)
 Strand = Plus / Plus

                                                                        
Query: 107  aagttatgtctgatataataaaatgtatattttatagtgaatttcataatatatatggta 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107  aagttatgtctgatataataaaatgtatattttatagtgaatttcataatatatatggta 166

                                                                        
Query: 167  caaaaattttacatcaatatcctgaaggttttgtttcaaatgaagtatttgaaggttttg 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167  caaaaattttacatcaatatcctgaaggttttgtttcaaatgaagtatttgaaggttttg 226

                                                                        
Query: 227  cagaatatattataccaaaaccaaaattatgtggaaaaattataacattaacagcatttg 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227  cagaatatattataccaaaaccaaaattatgtggaaaaattataacattaacagcatttg 286

                                                                        
Query: 287  attataaaattttaggatatccaatattaatgcaagatgtaaaatatcatagaaatgcat 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287  attataaaattttaggatatccaatattaatgcaagatgtaaaatatcatagaaatgcat 346

                                                                        
Query: 347  tattatttaatctttgttttgtttttgataaaagtacagatacaacaaattataatcaaa 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347  tattatttaatctttgttttgtttttgataaaagtacagatacaacaaattataatcaaa 406

                                                                        
Query: 407  tcgttagaaaattaggcacaatattaagaactttagaaaaggaaacagaatatttattta 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407  tcgttagaaaattaggcacaatattaagaactttagaaaaggaaacagaatatttattta 466

                                                                        
Query: 467  atcaatcaaaagaaattggattaaaagatcaaccagatttatcaaaaatattagaaacat 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467  atcaatcaaaagaaattggattaaaagatcaaccagatttatcaaaaatattagaaacat 526

                                                                        
Query: 527  tatatattgaattgaatacatatggtgaaagtacatttacagttgacgatgcaaatacaa 586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527  tatatattgaattgaatacatatggtgaaagtacatttacagttgacgatgcaaatacaa 586

                                                                        
Query: 587  ttaatgttaaactattgagtagaccagatgaaccaccagagatattaccacaccaagtac 646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587  ttaatgttaaactattgagtagaccagatgaaccaccagagatattaccacaccaagtac 646

                                                                        
Query: 647  cggtgttagttgaagagattgatacaaccaatgattcagaatgggatttaactgtattac 706
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647  cggtgttagttgaagagattgatacaaccaatgattcagaatgggatttaactgtattac 706

                                                                        
Query: 707  aaattctaccctacattgatggtatcaattatgttgcaagaatatcgaaattgacagaaa 766
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707  aaattctaccctacattgatggtatcaattatgttgcaagaatatcgaaattgacagaaa 766

                                                                        
Query: 767  tcgatatcaacctcgtcagtagctgtgtccaacatttggtttactacggtatcgttaaga 826
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767  tcgatatcaacctcgtcagtagctgtgtccaacatttggtttactacggtatcgttaaga 826

                                                                        
Query: 827  tggtagacatttttcaatactcaaatatttataatccaacacctaaaattagaaaacttg 886
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827  tggtagacatttttcaatactcaaatatttataatccaacacctaaaattagaaaacttg 886

                                                                        
Query: 887  caagtaatttagacatgcaaagagagtgtcaaagatatataaccatatcaggcgctacgc 946
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887  caagtaatttagacatgcaaagagagtgtcaaagatatataaccatatcaggcgctacgc 946

                                                                        
Query: 947  catgctcattcgaattcatattctccctctattcatcgttaagtatcgatacaacattta 1006
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947  catgctcattcgaattcatattctccctctattcatcgttaagtatcgatacaacattta 1006

                                                                        
Query: 1007 gagaatattgtttggagaattcattaacaagttggggtattgatgaacgtgctttcatta 1066
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 gagaatattgtttggagaattcattaacaagttggggtattgatgaacgtgctttcatta 1066

                                                                        
Query: 1067 tgtttggtgttattaatgatttcctaagaagaaaacaaagatatccactcttaaccaatc 1126
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1067 tgtttggtgttattaatgatttcctaagaagaaaacaaagatatccactcttaaccaatc 1126

                                                                        
Query: 1127 ttcaatcattagattctgttaccaccatctcataaaaaacatcttttaaatggtactaaa 1186
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1127 ttcaatcattagattctgttaccaccatctcataaaaaacatcttttaaatggtactaaa 1186

                                                                        
Query: 1187 aattatgatgaaatttgttgtatcctttcaattggtgttgaagctgttgaaaaattatta 1246
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1187 aattatgatgaaatttgttgtatcctttcaattggtgttgaagctgttgaaaaattatta 1246

                                                             
Query: 1247 ttcgaaattgcacatccagattcttttattgtaattttaaaataaaaaa 1295
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1247 ttcgaaattgcacatccagattcttttattgtaattttaaaataaaaaa 1295


 Score =  113 bits (57), Expect = 5e-25
 Identities = 57/57 (100%)
 Strand = Plus / Plus

                                                                   
Query: 1  atttcatcaaaacaatgaaattaatttaaaattgaagagaataaagagaagtgcaaa 57
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  atttcatcaaaacaatgaaattaatttaaaattgaagagaataaagagaagtgcaaa 57


>Contig-U10338-1 (Contig-U10338-1Q) /CSM_Contig/Contig-U10338-1Q.Seq.d
          Length = 1143

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 458 atttatttaatcaatcaaaagaaa 481
           ||||||||||||||| ||||||||
Sbjct: 803 atttatttaatcaataaaaagaaa 826


>Contig-U04577-1 (Contig-U04577-1Q) /CSM_Contig/Contig-U04577-1Q.Seq.d
          Length = 728

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 1   atttcatcaaaacaatgaaattaa 24
           |||||||| |||||||||||||||
Sbjct: 380 atttcatccaaacaatgaaattaa 403


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,552
Number of Sequences: 6905
Number of extensions: 26552
Number of successful extensions: 2953
Number of sequences better than 10.0: 321
length of query: 1295
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1279
effective length of database: 5,564,391
effective search space: 7116856089
effective search space used: 7116856089
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.24
Homology vs DNA 
Query= Contig-U02999-1 (Contig-U02999-1Q) /CSM_Contig/Contig-U02999-1Q.Seq.d
         (1295 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ346744) Dictyostelium discoideum cDNA clone:dda24k22, 3' ...  1318   0.0    2
(BJ346110) Dictyostelium discoideum cDNA clone:dda29k04, 3' ...  1245   0.0    2
(BJ399997) Dictyostelium discoideum cDNA clone:dds8k07, 3' e...  1201   0.0    3
(BJ347508) Dictyostelium discoideum cDNA clone:dda27f10, 3' ...  1183   0.0    3
(BJ328701) Dictyostelium discoideum cDNA clone:dda29k04, 5' ...   991   0.0    2
(AU052956) Dictyostelium discoideum slug cDNA, clone SLF378.      773   0.0    2
(BJ329415) Dictyostelium discoideum cDNA clone:dda24k22, 5' ...   884   0.0    3
(BJ330079) Dictyostelium discoideum cDNA clone:dda27f10, 5' ...   910   0.0    2
(BJ388195) Dictyostelium discoideum cDNA clone:dds8k07, 5' e...   890   0.0    2
(BJ328498) Dictyostelium discoideum cDNA clone:dda28l11, 5' ...   896   0.0    2
(BJ361111) Dictyostelium discoideum cDNA clone:ddc9l20, 5' e...   829   0.0    2
(BJ374694) Dictyostelium discoideum cDNA clone:ddc9l20, 3' e...   763   0.0    2
(AU061679) Dictyostelium discoideum slug cDNA, clone SLF378.      291   7e-78  2
(BJ345664) Dictyostelium discoideum cDNA clone:dda28l11, 3' ...   121   4e-33  3
(CR548612) Paramecium tetraurelia macronuclear largest chrom...    36   6e-05  24
(AC116551) Dictyostelium discoideum chromosome 2 map complem...    42   4e-04  9
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    38   0.004  18
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1...    34   0.005  13
(AC168532) Strongylocentrotus purpuratus clone R3-3091N16, W...    50   0.009  4
(AC087373) Homo sapiens chromosome 11, clone RP11-54J7, comp...    44   0.017  7
(AL844506) Plasmodium falciparum chromosome  7.                    36   0.031  19
(AL683822) Mouse DNA sequence from clone RP23-94I24 on chrom...    42   0.036  7
(FD236955) CBZF25813.g1 CBZF: Normalized blue catfish cDNA l...    50   0.057  2
(AC006280) Plasmodium falciparum chromosome 12 clone PFYAC72...    32   0.059  13
(AM422018) Candidatus Phytoplasma australiense complete genome.    34   0.11   18
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI...    32   0.13   13
(AC178864) Strongylocentrotus purpuratus clone R3-26L5, WORK...    42   0.14   9
(AC215981) Loxodonta africana clone VMRC15-164N1, WORKING DR...    40   0.14   7
(AC166949) Bos taurus clone CH240-192K23, WORKING DRAFT SEQU...    42   0.15   10
(AC139841) Medicago truncatula clone mth2-35g18, WORKING DRA...    36   0.18   7
(AL844509) Plasmodium falciparum chromosome 13.                    34   0.20   18
(Z85986) Human DNA sequence from clone RP1-108K11 on chromos...    50   0.22   1
(AC131647) Rattus norvegicus clone CH230-7A2, WORKING DRAFT ...    50   0.22   1
(AC121675) Rattus norvegicus clone CH230-59I6, WORKING DRAFT...    50   0.22   1
(AC097413) Rattus norvegicus clone CH230-165G21, WORKING DRA...    50   0.22   1
(AC094849) Rattus norvegicus clone CH230-6A10, *** SEQUENCIN...    50   0.22   1
(CU928571) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.22   1
(AC176145) Strongylocentrotus purpuratus clone R3-2E7, WORKI...    50   0.22   1
(DH518033) Rattus norvegicus DNA, BAC clone: RNB1-014H16, 5'...    50   0.22   1
(DT258656) JGI_CAAU8792.rev CAAU Pimephales promelas brain 7...    50   0.22   1
(AX344560) Sequence 11 from Patent WO0200932.                      38   0.22   12
(U87996) Candida albicans CLA4 protein kinase homolog gene, ...    44   0.27   2
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    32   0.30   25
(AC168380) Strongylocentrotus purpuratus clone R3-4013F6, WO...    34   0.31   7
(AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5...    36   0.33   12
(BX842699) Zebrafish DNA sequence from clone CH211-281K12 in...    44   0.38   5
(AC079459) Homo sapiens 12 BAC RP11-435O22 (Roswell Park Can...    42   0.40   9
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    32   0.40   12
(BJ513816) Oryzias latipes cDNA clone:MF01FSA010E01, 3' end ...    34   0.42   3
(AC183425) Populus trichocarpa clone Pop1-41C9, complete seq...    36   0.45   6
(AC150786) Medicago truncatula clone mth2-170o9, complete se...    36   0.47   9
(CR626873) Human DNA sequence from clone XX-NCIH2171_5J24.         40   0.49   5
(BJ745471) Oryzias latipes cDNA clone:MF015DA028g03, 3' end.       34   0.51   3
(CR759738) Human DNA sequence from clone XX-NCIH2171_16J17.        40   0.52   6
(CT173604) Sus scrofa genomic clone CH242-70L18, genomic sur...    46   0.62   2
(AQ556737) HS_5331_A1_D04_SP6E RPCI-11 Human Male BAC Librar...    36   0.69   3
(AC141767) Apis mellifera clone CH224-60D7, WORKING DRAFT SE...    36   0.70   6
(AE001431) Plasmodium falciparum 3D7 chromosome 2 section 68...    36   0.73   6
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    32   0.77   10
(AM443544) Vitis vinifera contig VV78X257981.12, whole genom...    40   0.85   4
(BC127433) Xenopus laevis hypothetical protein LOC100036802,...    48   0.86   1
(ER969092) AF__Bc0027I02r AF__Bc Aquilegia formosa genomic, ...    48   0.86   1
(EJ196687) 1092344244829 Global-Ocean-Sampling_GS-27-01-01-1...    48   0.86   1
(CZ916712) 4021002F01.x1 4021 - RescueMu Grid V Zea mays gen...    48   0.86   1
(EC270681) TT1C890TV Tetrahymena thermophila SB210 cDNA libr...    48   0.86   1
(DC225668) Plasmodium berghei strain ANKA cDNA clone:SG00334...    48   0.86   1
(CX859679) SJF2_BY_G02.T3 SJA Schistosoma japonicum cDNA, mR...    48   0.86   1
(FB571382) Sequence 249 from Patent EP1865317.                     32   0.90   10
(FB571326) Sequence 193 from Patent EP1865317.                     32   0.90   10
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    38   0.96   14
(AC069267) Homo sapiens chromosome 3 clone RP11-299P20 map 3...    36   0.99   7
(Z49128) Caenorhabditis elegans Cosmid M03C11.                     34   1.0    6
(BS000216) Pan troglodytes chromosome 22 clone:RP43-057N15, ...    36   1.1    9
(AZ540163) ENTFK70TR Entamoeba histolytica Sheared DNA Entam...    38   1.1    2
(AM443686) Vitis vinifera contig VV78X052149.15, whole genom...    46   1.1    3
(BM422751) RSA15_62 Rat testis cDNA library Rattus norvegicu...    42   1.1    2
(AC207008) Zea mays chromosome 2 clone ZMMBBb-429G16; ZMMBBb...    34   1.1    5
(AF165818) Guillardia theta nucleomorph chromosome 1, comple...    34   1.2    11
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    40   1.2    19
(AC146002) Pan troglodytes BAC clone RP43-153B17 from chromo...    36   1.3    9
(AC018659) Homo sapiens 12 BAC RP11-528M18 (Roswell Park Can...    36   1.3    8
(BF943836) QV0-NN1140-121000-438-g03 NN1140 Homo sapiens cDN...    38   1.4    2
(AC175644) Loxodonta africana clone VMRC15-252P8, WORKING DR...    40   1.4    6
(FM211045) Photorhabdus asymbiotica subsp. asymbiotica ATCC ...    44   1.4    2
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    32   1.4    12
(AE017263) Mesoplasma florum L1 complete genome.                   32   1.5    21
(AC189446) Brassica rapa subsp. pekinensis clone KBrB070M16,...    36   1.5    7
(AL954691) Mouse DNA sequence *** SEQUENCING CANCELLED *** f...    42   1.5    8
(AC232479) Brassica rapa subsp. pekinensis clone KBrB035P03,...    32   1.6    9
(AC118460) Homo sapiens chromosome 5 clone RP11-372A2, WORKI...    34   1.6    7
(AM445562) Vitis vinifera contig VV78X065691.10, whole genom...    36   1.6    5
(AC200951) Strongylocentrotus purpuratus clone R3-1102K22, W...    42   1.6    5
(AC130161) Rattus norvegicus clone CH230-120B1, WORKING DRAF...    36   1.7    2
(AC098991) Rattus norvegicus clone CH230-84N8, WORKING DRAFT...    36   1.7    2
(AL158824) Human DNA sequence from clone RP11-165N19 on chro...    32   1.7    2
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co...    32   1.9    16
(CU138575) Zebrafish DNA sequence from clone CH211-159E5.          36   2.0    8
(BH469277) BOGJJ47TR BOGJ Brassica oleracea genomic clone BO...    36   2.1    3
(AM452224) Vitis vinifera contig VV79X002984.2, whole genome...    34   2.1    4
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    34   2.1    17
(BX465849) Zebrafish DNA sequence from clone DKEY-263L8 in l...    36   2.1    7
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    30   2.1    16
(AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2...    32   2.2    13
(BE108089) UI-R-CA0-axa-c-08-0-UI.s1 UI-R-CA0 Rattus norvegi...    42   2.3    2
(AM454345) Vitis vinifera contig VV78X111796.2, whole genome...    38   2.3    3
(AE014836) Plasmodium falciparum 3D7 chromosome 11 section 1...    36   2.4    12
(AC136842) Oryza sativa (japonica cultivar-group) chromosome...    36   2.5    5
(AL844507) Plasmodium falciparum chromosome 8.                     36   2.5    19
(AC161474) Pan troglodytes BAC clone CH251-488B17 from chrom...    36   2.6    9
(AC159141) Medicago truncatula chromosome 2 BAC clone mth2-1...    36   2.7    9
(AC161848) Bos taurus clone CH240-100I10, WORKING DRAFT SEQU...    36   2.9    8
(BX649326) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    34   3.0    9
(EK124607) 1092970403379 Global-Ocean-Sampling_GS-31-01-01-1...    32   3.0    3
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    34   3.0    14
(EC824401) SME00001434 esmbsro2 Sawyeria marylandensis cDNA,...    38   3.2    2
(AC219450) Bos taurus clone CH240-340P12, WORKING DRAFT SEQU...    40   3.3    7
(AC120042) Homo sapiens chromosome 8, clone RP11-659E9, comp...    40   3.3    5
(CU972514) Zebrafish DNA sequence from clone CH73-207K4 in l...    46   3.4    1
(BX571969) Zebrafish DNA sequence from clone DKEY-93P1 in li...    46   3.4    1
(AL713850) Zebrafish DNA sequence from clone BUSM1-136D19 in...    46   3.4    1
(BX664741) Mouse DNA sequence from clone RP23-159B9 on chrom...    46   3.4    1
(AL731700) Mouse DNA sequence from clone RP23-239G1 on chrom...    46   3.4    1
(AL672025) Mouse DNA sequence from clone RP23-322K17 on chro...    46   3.4    1
(AC147219) Mus musculus BAC clone RP23-37K18 from 18, comple...    46   3.4    1
(AC132441) Mus musculus BAC clone RP23-239J2 from chromosome...    46   3.4    1
(AC095787) Rattus norvegicus 14 BAC CH230-9M3 (Children's Ho...    46   3.4    1
(AM481866) Vitis vinifera contig VV78X014025.4, whole genome...    46   3.4    1
(AM461280) Vitis vinifera contig VV78X265945.2, whole genome...    46   3.4    1
(EU395621) Sus scrofa hypoxanthine-guanine phosphoribosyltra...    46   3.4    1
(AL021566) Caenorhabditis elegans Cosmid F08E10.                   46   3.4    1
(AL121841) Human chromosome 14 DNA sequence BAC R-850C20 of ...    46   3.4    1
(AC111255) Rattus norvegicus clone CH230-35E16, *** SEQUENCI...    46   3.4    1
(CU468475) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   3.4    1
(CR382324) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   3.4    1
(AC230495) Bos taurus clone CH240-506P9, WORKING DRAFT SEQUE...    46   3.4    1
(AC220570) Bos taurus clone CH240-353A18, WORKING DRAFT SEQU...    46   3.4    1
(AC218566) Bos taurus clone CH240-311F23, WORKING DRAFT SEQU...    46   3.4    1
(AC201110) Strongylocentrotus purpuratus clone R3-13K24, WOR...    46   3.4    1
(AC181792) Strongylocentrotus purpuratus clone R3-1029J8, WO...    46   3.4    1
(AC173268) Bos taurus clone CH240-227E17, WORKING DRAFT SEQU...    46   3.4    1
(AQ985736) RPCI-23-322K17.TV RPCI-23 Mus musculus genomic cl...    46   3.4    1
(ET391199) S0135G24_SP6 CHORI-214 Salmo salar genomic clone ...    46   3.4    1
(ER963391) SOOAK01TF LargeInsertSoybeanGenLibBuild4 Glycine ...    46   3.4    1
(EK294247) 1095462341361 Global-Ocean-Sampling_GS-31-01-01-1...    46   3.4    1
(DX993893) CHORI103-16E9.TV CHORI103 Schistosoma mansoni gen...    46   3.4    1
(AG982122) Hemicentrotus pulcherrimus BAC clone: BUB1-01N08_...    46   3.4    1
(AG652533) Macaca fuscata fuscata DNA, clone: MSB2-068G09_F,...    46   3.4    1
(EB094749) EST57181 Salivary Gland 1 Aedes aegypti cDNA clon...    46   3.4    1
(DW189563) EST05833 Salivary Gland 1 Aedes aegypti cDNA clon...    46   3.4    1
(DW189406) EST05676 Salivary Gland 1 Aedes aegypti cDNA clon...    46   3.4    1
(AU072939) Dictyostelium discoideum slug cDNA, clone SSF488.       46   3.4    1
(AU060524) Dictyostelium discoideum slug cDNA, clone SLK285.       46   3.4    1
(BM648052) 17000687324722 A.Gam.ad.cDNA1 Anopheles gambiae c...    46   3.4    1
(BM636871) 17000687563009 A.Gam.ad.cDNA1 Anopheles gambiae c...    46   3.4    1
(BM616873) 17000687149328 A.Gam.ad.cDNA.blood1 Anopheles gam...    46   3.4    1
(BJ363519) Dictyostelium discoideum cDNA clone:ddc27i03, 5' ...    46   3.4    1
(BJ328126) Dictyostelium discoideum cDNA clone:dda23e03, 5' ...    46   3.4    1
(CP001034) Natranaerobius thermophilus JW/NM-WN-LF, complete...    46   3.4    1
(AX344677) Sequence 102 from Patent WO0200927.                     38   3.4    4
(BH729645) BOHZX89TF BO_2_3_KB Brassica oleracea genomic clo...    36   3.4    2
(EI471773) PV_GBa0080G09.f PV_GBa Phaseolus vulgaris genomic...    40   3.5    2
(AC005140) Plasmodium falciparum chromosome 12 clone PFYACB8...    32   3.5    15
(AX458545) Sequence 91 from Patent WO0246454.                      40   3.5    3
(AC178219) Strongylocentrotus purpuratus clone R3-3085K11, W...    34   3.5    8
(ER621097) 1093017409302 Global-Ocean-Sampling_GS-36-01-01-2...    36   3.6    2
(EK311976) 1095462400370 Global-Ocean-Sampling_GS-31-01-01-1...    36   3.6    2
(BH247884) BOGAQ59TF BOGA Brassica oleracea genomic clone BO...    42   3.6    2
(EK083224) 1092961120845 Global-Ocean-Sampling_GS-31-01-01-1...    36   3.7    2
(EK119238) 1092963333167 Global-Ocean-Sampling_GS-31-01-01-1...    36   3.8    2
(EJ538527) 1092955331284 Global-Ocean-Sampling_GS-29-01-01-1...    42   3.8    2
(CL567391) OB__Ba0038I15.f OB__Ba Oryza brachyantha genomic ...    40   3.8    2
(AY534144) Saprolegnia ferax strain ATCC 36051 mitochondion,...    36   3.9    7
(BH139643) ENTOD50TF Entamoeba histolytica Sheared DNA Entam...    38   3.9    2
(EK460378) 1095469123612 Global-Ocean-Sampling_GS-32-01-01-1...    36   4.0    2
(EJ015553) 1095433016083 Global-Ocean-Sampling_GS-26-01-01-1...    36   4.0    2
(AC160755) Bos taurus clone CH240-91O18, WORKING DRAFT SEQUE...    42   4.0    8
(AC108162) Homo sapiens BAC clone RP11-686G17 from 4, comple...    36   4.1    6
(EJ310888) 1095390209226 Global-Ocean-Sampling_GS-27-01-01-1...    40   4.1    2
(EJ327852) 1092963403461 Global-Ocean-Sampling_GS-28-01-01-1...    40   4.1    2
(BX530027) Zebrafish DNA sequence from clone DKEYP-81G7 in l...    34   4.2    8
(AE017243) Mycoplasma hyopneumoniae J, complete genome.            38   4.3    17
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    30   4.4    11
(EK032875) 1092956090000 Global-Ocean-Sampling_GS-31-01-01-1...    30   4.4    4
(CU856217) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   4.5    9
(AP008983) Clostridium phage c-st genomic DNA, complete genome.    32   4.7    12
(AC005308) Plasmodium falciparum chromosome 12 clone PFYAC49...    32   4.8    9
(DD010735) Diagnosis of known genetic Parameters within the ...    38   4.8    10
(AC181702) Strongylocentrotus purpuratus clone R3-1040B20, W...    36   5.0    12
(CT027665) Medicago truncatula chromosome 5 clone mth2-69e15...    34   5.1    10
(DQ832718) Phytophthora ramorum mitochondrion, complete genome.    34   5.2    7
(AL354819) Human DNA sequence from clone RP11-7B3 on chromos...    36   5.3    10
(EU427470) Phytophthora ramorum strain CBS 101553 mitochondr...    34   5.3    7
(AF284562) Homo sapiens chromosome 8 clone CTD-2541B7 map 8q...    40   5.3    6
(DX541278) GH_MBb0089H21f GH_MBb Gossypium hirsutum genomic ...    38   5.3    2
(BX548174) Prochlorococcus marinus MED4 complete genome.           38   5.4    19
(AJ969074) Spiroplasma citri plasmid pSci6.                        34   5.4    6
(AC007341) Homo sapiens chromosome 16 clone RP11-381L15, com...    38   5.6    7
(CP000939) Clostridium botulinum B1 str. Okra, complete genome.    36   5.7    16
(AC105190) Homo sapiens chromosome 11, clone RP11-116O9, com...    40   5.9    6
(U03641) Borrelia burgdorferi isolate cp8.3/Ip21 plasmid, co...    36   6.0    4
(AC126285) Rattus norvegicus clone CH230-42H1, *** SEQUENCIN...    32   6.1    2
(AC112545) Rattus norvegicus clone CH230-231C15, *** SEQUENC...    32   6.1    2
(FP103052) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   6.2    2
(CU855996) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   6.3    2
(CR352302) Zebrafish DNA sequence from clone DKEY-260C5 in l...    36   6.4    5
(AC216452) Populus trichocarpa clone POP018-D02, complete se...    32   6.4    10
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    34   6.7    17
(AC107912) Homo sapiens chromosome 15 clone CTD-2522L15 map ...    38   6.8    5
(AC208737) Populus trichocarpa clone JGIACSB1077-D15, comple...    36   7.0    5
(DQ889680) Bacillus cereus strain G9241 plasmid pBCXO1, comp...    32   7.2    11
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4...    28   7.3    17
(FP102187) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   7.4    8
(CU466469) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   7.5    7
(AX323834) Sequence 322 from Patent WO0192565.                     32   7.6    4
(GM996182) Sequence 322 from Patent EP2014776.                     32   7.6    4
(BX248126) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   7.7    9
(CP000932) Campylobacter lari RM2100, complete genome.             32   7.9    23
(CU457813) S.lycopersicum DNA sequence from clone LE_HBa-203...    40   8.0    6
(AL078590) Human DNA sequence from clone RP11-557H15 on chro...    32   8.0    9
(AC117153) Rattus norvegicus clone CH230-64A17, WORKING DRAF...    40   8.1    7
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4...    32   8.1    12
(AC124197) Mus musculus BAC clone RP23-298C4 from 15, comple...    42   8.2    7
(CP000979) Borrelia duttonii Ly plasmid pl165, complete sequ...    34   8.3    9
(AL391423) Human DNA sequence from clone RP13-43J18 on chrom...    34   8.4    7
(AM448435) Vitis vinifera contig VV78X199971.8, whole genome...    36   8.5    5
(AC151436) Carollia perspicillata clone 281M20, WORKING DRAF...    36   8.5    6
(CU055511) Equus caballus GSS, BAC clone CH241-158D9, T7 end...    34   8.6    2
(FH233209) CHO_OF3416xl10r1.ab1 CHO_OF3 Nicotiana tabacum ge...    36   8.7    3
(EC380455) PMAL-aab26b03.g1 Lamprey_EST_Tissues Petromyzon m...    42   8.8    2
(AC142526) Medicago truncatula clone mth2-34h20, complete se...    40   8.9    8
(AY343333) Enterobacteria phage RB49, complete genome.             42   9.0    5
(EF437941) Enterobacteria phage Phi1, complete genome.             42   9.0    5
(CU628000) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   9.1    8
(AL162580) Human DNA sequence from clone RP11-524A17 on chro...    42   9.1    6
(AC192854) Pan troglodytes BAC clone CH251-350B3 from chromo...    38   9.2    6
(DL235794) NOVEL COMPOSITIONS AND METHODS FOR CANCER.              38   9.3    6
(DD164493) NOVEL COMPOSITIONS AND METHODS FOR CANCER.              38   9.3    6
(AX695713) Sequence 1340 from Patent WO03008583.                   38   9.3    6
(AL512600) Human DNA sequence from clone RP11-452A14 on chro...    34   9.5    8
(EA682806) Sequence 61685 from patent US 7365185.                  40   9.5    6
(CT963117) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   9.7    8
(AC186986) Canis familiaris chromosome 6, clone XX-302M17, c...    34   9.7    10
(AC178291) Strongylocentrotus purpuratus clone R3-3095A13, W...    42   9.8    3

>(BJ346744) Dictyostelium discoideum cDNA clone:dda24k22, 3' end,
            single read.
          Length = 774

 Score = 1318 bits (665), Expect(2) = 0.0
 Identities = 668/669 (99%)
 Strand = Plus / Minus


Query: 475  aaagaaattggattaaaagatcaaccagatttatcaaaaatattagaaacattatatatt 534
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774  aaagaaattggattaaaagatcaaccagatttatcaaaaatattagaaacattatatatt 715


Query: 535  gaattgaatacatatggtgaaagtacatttacagttgacgatgcaaatacaattaatgtt 594
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714  gaattgaatacatatggtgaaagtacatttacagttgacgatgcaaatacaattaatgtt 655


Query: 595  aaactattgagtagaccagatgaaccaccagagatattaccacaccaagtaccggtgtta 654
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654  aaactattgagtagaccagatgaaccaccagagatattaccacaccaagtaccggtgtta 595


Query: 655  gttgaagagattgatacaaccaatgattcagaatgggatttaactgtattacaaattcta 714
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594  gttgaagagattgatacaaccaatgattcagaatgggatttaactgtattacaaattcta 535


Query: 715  ccctacattgatggtatcaattatgttgcaagaatatcgaaattgacagaaatcgatatc 774
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534  ccctacatcgatggtatcaattatgttgcaagaatatcgaaattgacagaaatcgatatc 475


Query: 775  aacctcgtcagtagctgtgtccaacatttggtttactacggtatcgttaagatggtagac 834
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474  aacctcgtcagtagctgtgtccaacatttggtttactacggtatcgttaagatggtagac 415


Query: 835  atttttcaatactcaaatatttataatccaacacctaaaattagaaaacttgcaagtaat 894
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414  atttttcaatactcaaatatttataatccaacacctaaaattagaaaacttgcaagtaat 355


Query: 895  ttagacatgcaaagagagtgtcaaagatatataaccatatcaggcgctacgccatgctca 954
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354  ttagacatgcaaagagagtgtcaaagatatataaccatatcaggcgctacgccatgctca 295


Query: 955  ttcgaattcatattctccctctattcatcgttaagtatcgatacaacatttagagaatat 1014
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294  ttcgaattcatattctccctctattcatcgttaagtatcgatacaacatttagagaatat 235


Query: 1015 tgtttggagaattcattaacaagttggggtattgatgaacgtgctttcattatgtttggt 1074
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234  tgtttggagaattcattaacaagttggggtattgatgaacgtgctttcattatgtttggt 175


Query: 1075 gttattaatgatttcctaagaagaaaacaaagatatccactcttaaccaatcttcaatca 1134
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174  gttattaatgatttcctaagaagaaaacaaagatatccactcttaaccaatcttcaatca 115


Query: 1135 ttagattct 1143
            |||||||||
Sbjct: 114  ttagattct 106

 Score =  188 bits (95), Expect(2) = 0.0
 Identities = 102/105 (97%)
 Strand = Plus / Minus


Query: 1145 ttaccaccatctcataaaaaacatcttttaaatggtactaaaaattatgatgaaatttgt 1204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105  ttaccaccatctcataaaaaacatcttttaaatggtactaaaaattatgatgaaatttgt 46


Query: 1205 tgtatcctttcaattggtgttgaagctgttgaaaaattattattc 1249
            ||||||||||||||||||| |||||||||  ||||||||||||||
Sbjct: 45   tgtatcctttcaattggtgntgaagctgtntaaaaattattattc 1

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,843,642,475
Number of extensions: 122834781
Number of successful extensions: 12294351
Number of sequences better than 10.0: 247
Length of query: 1295
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1271
Effective length of database: 99,340,224,878
Effective search space: 126261425819938
Effective search space used: 126261425819938
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.21
Homology vs Protein 
Query= Contig-U02999-1 (Contig-U02999-1Q) /CSM_Contig/Contig-U02999-1Q.Seq.d
         (1295 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9WUE4) RecName: Full=Tumor suppressor candidate 4; AltName: Fu...   267   1e-71
BT020747_1(BT020747|pid:none) Bos taurus tumor suppressor candid...   266   1e-71
BC105243_1(BC105243|pid:none) Bos taurus tumor suppressor candid...   265   6e-71
(Q8WTW4) RecName: Full=Tumor suppressor candidate 4; AltName: Fu...   265   1e-70
BC075601_1(BC075601|pid:none) Xenopus tropicalis tumor suppresso...   263   3e-69
BC041229_1(BC041229|pid:none) Xenopus laevis nitrogen permase ho...   259   3e-68
BC122356_1(BC122356|pid:none) Danio rerio tumor suppressor candi...   258   6e-68
CR382137_243(CR382137|pid:none) Debaryomyces hansenii strain CBS...   223   1e-56
(O42857) RecName: Full=Nitrogen permease regulator 2 homolog;  &...   216   1e-54
BC083745_1(BC083745|pid:none) Rattus norvegicus tumor suppressor...   210   2e-54
AM920431_919(AM920431|pid:none) Penicillium chrysogenum Wisconsi...   206   1e-51
AP007155_764(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...   201   4e-50
AE017343_409(AE017343|pid:none) Cryptococcus neoformans var. neo...   194   6e-48
CR382132_116(CR382132|pid:none) Yarrowia lipolytica strain CLIB1...   184   5e-45
CR382124_41(CR382124|pid:none) Kluyveromyces lactis strain NRRL ...   167   6e-40
CU928167_469(CU928167|pid:none) Kluyveromyces thermotolerans str...   164   8e-39
CR380958_572(CR380958|pid:none) Candida glabrata strain CBS138 c...   164   8e-39
S44938(S44938;S50527;S69008) nitrogen permease regulator NPR2 - ...   160   9e-38
AY692866_1(AY692866|pid:none) Saccharomyces cerevisiae clone FLH...   160   1e-37
CU633438_364(CU633438|pid:none) Podospora anserina genomic DNA c...   155   4e-36
AF040708_1(AF040708|pid:none) Homo sapiens candidate tumor suppr...   147   6e-34
T29643(T29643)hypothetical protein F49E8.1 - Caenorhabditis eleg...   143   2e-32
BX842626_7(BX842626|pid:none) Neurospora crassa DNA linkage grou...   134   5e-30
FN357302_45(FN357302|pid:none) Schistosoma mansoni genome sequen...    64   1e-08
CR848308_1(CR848308|pid:none) Xenopus tropicalis finished cDNA, ...    39   0.41
AC159408_26(AC159408|pid:none) Trypanosoma brucei chromosome 7 c...    39   0.41
(O94383) RecName: Full=Structural maintenance of chromosomes pro...    38   0.70
A75119(A75119) hypothetical protein PAB1865 - Pyrococcus abyssi ...    38   0.91
AK047190_1(AK047190|pid:none) Mus musculus 10 days neonate cereb...    37   1.2
Z69666_1(Z69666|pid:none) Human DNA sequence from clone XX-24F8 ...    37   2.0
AL662780_3(AL662780|pid:none) Mouse DNA sequence from clone RP23...    37   2.0
(Q8VIJ8) RecName: Full=UPF0171 protein C16orf35 homolog; AltName...    37   2.0
(Q12980) RecName: Full=UPF0171 protein C16orf35; AltName: Full=A...    37   2.0
BX537291_1(BX537291|pid:none) Zebrafish DNA sequence from clone ...    37   2.0
AY016020_1(AY016020|pid:none) Gallus gallus alpha globin gene cl...    36   3.5
U13203_1(U13203|pid:none) Arabidopsis thaliana phosphoinositide-...    35   5.9
BA000023_2439(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA,...    35   5.9
AL035540_9(AL035540|pid:none) Arabidopsis thaliana DNA chromosom...    35   5.9
AM910994_621(AM910994|pid:none) Plasmodium knowlesi strain H chr...    35   5.9
AL929357_53(AL929357|pid:none) Plasmodium falciparum strain 3D7,...    35   7.7

>(Q9WUE4) RecName: Full=Tumor suppressor candidate 4; AltName:
            Full=NPR2-like; AltName: Full=Gene 21 protein;
            Short=G21 protein;  &AF131207_1(AF131207|pid:none)
            &AK010331_1(AK010331|pid:none)
            &AK013299_1(AK013299|pid:none)
            &BC026548_1(BC026548|pid:none)
          Length = 380

 Score =  267 bits (683), Expect(2) = 1e-71
 Identities = 137/331 (41%), Positives = 201/331 (60%)
 Frame = +1

Query: 124  IKCIFYSEFHNIYGTKILHQYPEGFVSNEVFEGFAEYIIPKPKLCGKIITLTAFDYKILG 303
            I+CIF+SEFH   G KI +Q PE F+S E+F+    YII KP+L  K+IT+TA + K++G
Sbjct: 7    IECIFFSEFHPTLGPKITYQVPEDFISRELFDTVQVYIITKPELQNKLITVTAMEKKLIG 66

Query: 304  YPILMQDVKYHRNALLFNLCFVFDKSTDTTNYNQIVRKLGTILRTLEKETEYLFNQSKEI 483
             P+ ++  KY RNALLFNL FV D    T     IV+KL   L TLE E+ ++ N+
Sbjct: 67   CPVCIEHKKYSRNALLFNLGFVCDAQAKTCALEPIVKKLAGYLTTLELESSFVSNE---- 122

Query: 484  GLKDQPDLSKILETLYIELNTYGESTFTVDDANTINVKLLSRPDEPPEILPHQVPVLVEE 663
              + +  L  I+  L  ELN  G  T  +D++NTI++K++ +  +PP    + VPV  ++
Sbjct: 123  --ESKQKLVPIMTILLEELNASGRCTLPIDESNTIHLKVIEQRPDPPVAQEYDVPVFTKD 180

Query: 664  IDTTNDSEWDLTVLQILPYIDGINYVARISKLTEIDINLVSSCVQHLVYYGIVKMVDIFQ 843
             +    S+WDLT  QILPYIDG  +V +IS   ++++NLV   +Q+L+YYG+V +V I Q
Sbjct: 181  KEDFFSSQWDLTTQQILPYIDGFRHVQKISAEADVELNLVRIAIQNLLYYGVVTLVSILQ 240

Query: 844  YSNIYNPTPKIRKLASNLDMQRECQRYITISGATPCSFEFIFSLYSSLSIDTTFREYCLE 1023
            YSN+Y PTPK++ L  +  +Q  C  Y+T  G    S   +F LY SLS  TT R+
Sbjct: 241  YSNVYCPTPKVQDLVDDKSLQEACLSYVTKQGHKRASLRDVFQLYCSLSPGTTVRDLIGR 300

Query: 1024 NSLTSWGIDERAFIMFGVINDFLRRKQRYPL 1116
            +      +DER  I FG++ + +RR Q+YP+
Sbjct: 301  HPQQLQHVDERKLIQFGLMKNLIRRLQKYPV 331

 Score = 27.3 bits (59), Expect(2) = 1e-71
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 1154 SHKKHLLNGTKNYDEICCILSIGVEAVEKLL 1246
            SH   L  G  +YDEICC   +    +++ L
Sbjct: 339  SHPARLYTGCHSYDEICCKTGMSYHELDERL 369

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,948,769,392
Number of extensions: 38330729
Number of successful extensions: 113240
Number of sequences better than 10.0: 40
Number of HSP's gapped: 113156
Number of HSP's successfully gapped: 58
Length of query: 431
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 300
Effective length of database: 627,191,635
Effective search space: 188157490500
Effective search space used: 188157490500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.77  gvh: 0.30  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.09  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for Contig-U02999-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 2
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0