Contig-U15371-1 |
Contig ID |
Contig-U15371-1 |
Contig update |
2004. 6.11 |
Contig sequence |
|
Gap |
no gap |
Contig length |
917 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
7704125 |
End point |
7703209 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
2 |
Number of EST |
2 |
Link to clone list |
U15371 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
|
dna update |
2009. 1.24 |
Homology vs DNA |
Query= Contig-U15371-1 (Contig-U15371-1Q) /CSM_Contig/Contig-U15371-1Q.Seq.d (917 letters)
Database: ddbj_B 98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 1065 0.0 2 (BJ416917) Dictyostelium discoideum cDNA clone:ddv27c22, 5' ... 1057 0.0 2 (C23800) Dictyostelium discoideum gamete cDNA, clone FC-AK16. 739 0.0 2 (CU223885) Populus EST from leave. 52 0.037 1 (AC189422) Brassica rapa subsp. pekinensis clone KBrB063M21,... 46 0.11 5 (EK546185) 1095516088803 Global-Ocean-Sampling_GS-32-01-01-1... 38 0.11 2 (CP000865) Acinetobacter baumannii ACICU plasmid pACICU2, co... 44 0.26 3 (CT516176) A BAC library has been constructed from cultivar ... 44 0.47 2 (AC217333) Solanum lycopersicum chromosome 12 clone LE_HBa-2... 46 0.54 3 (AC145930) Gallus gallus BAC clone CH261-31O19 from chromoso... 48 0.58 1 (AC159877) Bos taurus clone CH240-53A17, WORKING DRAFT SEQUE... 48 0.58 1 (AC185686) Bos taurus clone RP42-53D9, WORKING DRAFT SEQUENC... 48 0.58 1 (AC164339) Bos taurus clone CH240-150J22, *** SEQUENCING IN ... 48 0.58 1 (CR963332) mth4-12G17RM1 BAC end, cultivar Jemalong A17 of M... 48 0.58 1 (CG958683) MBEJO85TRB mth2 Medicago truncatula genomic clone... 48 0.58 1 (CG953561) MBEMU25TR mth2 Medicago truncatula genomic clone ... 48 0.58 1 (CE156788) tigr-gss-dog-17000371385125 Dog Library Canis lup... 48 0.58 1 (AC179929) Strongylocentrotus purpuratus clone R3-3031D6, WO... 36 1.2 2 (AC181789) Strongylocentrotus purpuratus clone R3-1029L3, WO... 36 1.2 2 (AC177166) Strongylocentrotus purpuratus clone R3-4015K05, W... 36 1.2 2 (DY960361) CLSM10300.b1_H08.ab1 CLS(LMS) lettuce sativa Lact... 32 1.6 2 (BZ391350) EINDR71TR EI_10_12_KB Entamoeba invadens genomic ... 42 1.9 2 (AC153522) Mus musculus 10 BAC RP23-8O1 (Roswell Park Cancer... 46 2.3 1 (AC131789) Mus musculus BAC clone RP24-444D19 from 10, compl... 46 2.3 1 (AC183844) Saimiri boliviensis boliviensis clone CH254-303A1... 46 2.3 1 (AC148541) Saimiri boliviensis boliviensis clone CH254-399L1... 46 2.3 1 (AC138437) Chlorocebus aethiops clone CH252-390I5, complete ... 46 2.3 1 (AC123966) Macaca mulatta clone CH250-72H9, complete sequence. 46 2.3 1 (AC091381) Papio anubis clone RP41-468N20, complete sequence. 46 2.3 1 (CU302346) Medicago truncatula chromosome 5 clone mte1-58a14... 46 2.3 1 (AP008215) Oryza sativa (japonica cultivar-group) genomic DN... 46 2.3 1 (AP005801) Oryza sativa Japonica Group genomic DNA, chromoso... 46 2.3 1 (AM446379) Vitis vinifera contig VV78X110724.8, whole genome... 46 2.3 1 (AF226308) Ceratitis capitata microsatellite ccmic20 sequence. 46 2.3 1 (AC091093) Papio anubis clone RP41-323F4, WORKING DRAFT SEQU... 46 2.3 1 (CU468347) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.3 1 (AC216365) Solanum lycopersicum chromosome 12 clone LE_HBa-1... 46 2.3 1 (AC209024) Zea mays chromosome 4 clone CH201-65K7; ZMMBBc006... 46 2.3 1 (EJ465986) 1095403007891 Global-Ocean-Sampling_GS-28-01-01-1... 46 2.3 1 (DU316894) 1098396129122 CHORI-243 Ovis aries genomic clone ... 46 2.3 1 (CT543986) A BAC library has been constructed from cultivar ... 46 2.3 1 (CE054106) tigr-gss-dog-17000358598962 Dog Library Canis lup... 46 2.3 1 (CF358386) rm89h09.y1 Meloidogyne arenaria J2 SMART pGEM Mel... 46 2.3 1 (BQ598000) MI-P-A2-afi-h-02-1-UM.s1 MI-P-A2 Sus scrofa cDNA ... 46 2.3 1 (FE577930) CAXG10900.rev Amphioxus Branchiostoma floridae un... 46 2.3 1 (AC195450) Glycine tomentella clone gtt1-310p22, complete se... 36 2.4 6 (AC092744) Homo sapiens chromosome 12 clone RP11-23B17, WORK... 34 3.1 6 (AM426159) Vitis vinifera contig VV78X077693.6, whole genome... 38 3.5 4 (AL083430) Arabidopsis thaliana genome survey sequence T7 en... 34 3.6 3 (AC154489) Mus musculus BAC clone RP23-205G15 from chromosom... 34 4.3 2 (AC010207) Homo sapiens 3 BAC RP11-375I20 (Roswell Park Canc... 34 4.4 2 (CU861529) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 4.4 2 (AM438608) Vitis vinifera contig VV78X052328.11, whole genom... 42 4.4 3 (BX294194) Mouse DNA sequence from clone RP23-342D10 on chro... 34 4.4 2 (AC196783) MACACA MULATTA BAC clone CH250-311C18 from chromo... 36 4.6 7 (AC023428) Mus musculus clone RP23-313E24, *** SEQUENCING IN... 34 4.7 2 (EJ032059) 1095454049770 Global-Ocean-Sampling_GS-26-01-01-1... 42 4.7 2 (CS604413) Sequence 3399 from Patent WO2007039234. 36 5.1 2 (CS602765) Sequence 1751 from Patent WO2007039234. 36 5.1 2 (AK052097) Mus musculus 12 days embryo eyeball cDNA, RIKEN f... 34 5.6 2 (DN572753) 92277775 Sea Urchin primary mesenchyme cell cDNA ... 32 5.8 2 (DN569457) 93863476 Sea Urchin primary mesenchyme cell cDNA ... 32 5.8 2 (BH582211) BOGGR56TF BOGG Brassica oleracea genomic clone BO... 42 6.1 2 (CL722839) OR_BBa0051N04.r OR_BBa Oryza nivara genomic clone... 36 6.1 2 (EK387102) 1095469487567 Global-Ocean-Sampling_GS-31-01-01-1... 40 6.4 2 (AC143339) Medicago truncatula clone mth2-20g20, complete se... 42 6.6 4 (FH638687) CHO_OF4578xl20f1.ab1 CHO_OF4 Nicotiana tabacum ge... 36 6.7 2 (EJ735068) 1092961100195 Global-Ocean-Sampling_GS-30-02-01-1... 36 7.0 2 (FH638767) CHO_OF4578xl20r1.ab1 CHO_OF4 Nicotiana tabacum ge... 36 7.1 2 (AM439839) Vitis vinifera contig VV78X236146.14, whole genom... 40 7.4 2 (ER416397) 1092963672359 Global-Ocean-Sampling_GS-35-01-01-1... 42 7.8 2 (EA687478) Sequence 66357 from patent US 7365185. 36 8.2 3 (DN567472) 90193332 Sea Urchin primary mesenchyme cell cDNA ... 38 8.3 2 (CR312767) mte1-35B23RM1 BAC end, cultivar Jemalong A17 of M... 40 8.6 2 (AC201857) Gallus gallus BAC clone CH261-97O8 from chromosom... 44 9.1 1 (AC193635) Gallus gallus BAC clone CH261-110K21 from chromos... 44 9.1 1 (AC148021) Mus musculus BAC clone RP23-9A7 from chromosome 1... 44 9.1 1 (AC134830) Mus musculus BAC clone RP24-498G16 from chromosom... 44 9.1 1 (AC102168) Mus musculus chromosome 7, clone RP23-452N21, com... 44 9.1 1 (CU062644) M.truncatula DNA sequence from clone MTH2-155M7 o... 44 9.1 1 (AM423646) Vitis vinifera contig VV78X222652.5, whole genome... 44 9.1 1 (AL161492) Arabidopsis thaliana DNA chromosome 4, contig fra... 44 9.1 1 (AF069300) Arabidopsis thaliana BAC F3D13. 44 9.1 1 (AL355495) Human DNA sequence from clone RP11-53N12 on chrom... 44 9.1 1 (AC137305) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 44 9.1 1 (AC108661) Rattus norvegicus clone CH230-231H7, WORKING DRAF... 44 9.1 1 (AC101192) Mus musculus clone RP23-177A19, LOW-PASS SEQUENCE... 44 9.1 1 (AC098346) Rattus norvegicus clone CH230-1O1, *** SEQUENCING... 44 9.1 1 (CU582784) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.1 1 (CU468465) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.1 1 (AC232824) Lama pacos clone CH246-360M16, WORKING DRAFT SEQU... 44 9.1 1 (AC232721) Lama pacos clone CH246-275J9, WORKING DRAFT SEQUE... 44 9.1 1 (AC232590) Brassica rapa subsp. pekinensis clone KBrH089C20,... 44 9.1 1 (AC231466) Choloepus hoffmanni clone CH281-360O8, WORKING DR... 44 9.1 1 (AC231461) Choloepus hoffmanni clone CH281-208D11, WORKING D... 44 9.1 1 (AC174538) Bos taurus clone CH240-90K21, WORKING DRAFT SEQUE... 44 9.1 1 (AC164396) Mus musculus chromosome 7 clone RP23-384M11 map 7... 44 9.1 1 (FI294159) AdH1026-CPY2-A17TF AdH1 Arachis duranensis genomi... 44 9.1 1 (FI067562) CHO_OF7305xg03r1.ab1 CHO_OF7 Nicotiana tabacum ge... 44 9.1 1 (FH959180) CHO_OF6770xi20f1.ab1 CHO_OF6 Nicotiana tabacum ge... 44 9.1 1 (FH657714) CHO_OF4406xn07r1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 9.1 1 (FH657642) CHO_OF4406xn07f1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 9.1 1 (FH314170) CHO_OF4483xj05r1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 9.1 1 (FH314083) CHO_OF4483xj05f1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 9.1 1 (FH043854) CHO_OF3183xc03r1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 9.1 1 (ET904328) CHO_OF365xh02f1.ab1 CHO_OF Nicotiana tabacum geno... 44 9.1 1 (ET866375) CHO_OF315xm10f1.ab1 CHO_OF Nicotiana tabacum geno... 44 9.1 1 (ET833585) CHO_OF796xn19r1.ab1 CHO_OF Nicotiana tabacum geno... 44 9.1 1 (ET767053) CHO_OF187xa09r1.ab1 CHO_OF Nicotiana tabacum geno... 44 9.1 1 (EJ949290) 1093018932983 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.1 1 (AL952400) Arabidopsis thaliana T-DNA flanking sequence GK-3... 44 9.1 1 (EJ036057) 1095454069180 Global-Ocean-Sampling_GS-26-01-01-1... 44 9.1 1 (EI824086) POTG048TR Solanum tuberosum RHPOTKEY BAC ends Sol... 44 9.1 1 (DU795704) APKH6051.g2 HF770_12-21-03 uncultured marine micr... 44 9.1 1 (CU849294) A BAC library has been constructed from PN40024 g... 44 9.1 1 (CU820896) A BAC library has been constructed from PN40024 g... 44 9.1 1 (CE720006) tigr-gss-dog-17000315118790 Dog Library Canis lup... 44 9.1 1 (CE588922) tigr-gss-dog-17000366373816 Dog Library Canis lup... 44 9.1 1 (EC005422) 7400302 CE04 Caenorhabditis elegans cDNA clone 27... 44 9.1 1 (CF788857) 860847 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence. 44 9.1 1 (FD322804) CBPN11009.b1 CBPN: Subtracted channel catfish cDN... 44 9.1 1 (CP000817) Lysinibacillus sphaericus C3-41, complete genome. 44 9.1 1 (CP000153) Sulfurimonas denitrificans DSM 1251, complete gen... 44 9.1 1 (BX248583) Blochmannia floridanus complete genome. 44 9.1 1 (AC119811) Mus musculus chromosome 15, clone RP23-79P13, com... 36 9.2 6
>(AC116977) Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. Length = 302156
Score = 1065 bits (537), Expect(2) = 0.0 Identities = 537/537 (100%) Strand = Plus / Minus
Query: 381 gtaatcttgataaagatacaccaattcacatcgattcagaaatccccgatccaagtaatt 440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 111239 gtaatcttgataaagatacaccaattcacatcgattcagaaatccccgatccaagtaatt 111180
Query: 441 caaccattgccgataaacttgatttaagaaattcattttcaaaaaataaagattttgaaa 500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 111179 caaccattgccgataaacttgatttaagaaattcattttcaaaaaataaagattttgaaa 111120
Query: 501 atgaaatgaaagaacttgataaattcaccactattaaaactcaaaaatctcaagaagaca 560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 111119 atgaaatgaaagaacttgataaattcaccactattaaaactcaaaaatctcaagaagaca 111060
Query: 561 ctatcgatagtgattccaaacaatatgccaaggaagccaatattgtctttggtcaaaata 620 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 111059 ctatcgatagtgattccaaacaatatgccaaggaagccaatattgtctttggtcaaaata 111000
Query: 621 atattattccaattgaagccactaatattattaaaccagatattgtatctacaattgatt 680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 110999 atattattccaattgaagccactaatattattaaaccagatattgtatctacaattgatt 110940
Query: 681 ttatgtcaacaaaaaatatcgatgatacattagcaaaagatcaaaataccacccctacta 740 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 110939 ttatgtcaacaaaaaatatcgatgatacattagcaaaagatcaaaataccacccctacta 110880
Query: 741 ctcaagtctcttcactcaatatcaaatccattcttaaagatgctaaaaactcaccaggta 800 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 110879 ctcaagtctcttcactcaatatcaaatccattcttaaagatgctaaaaactcaccaggta 110820
Query: 801 tttcatcagatttagatgacttcttctcaaaactttcaaatcttgacgaacaaaaaccac 860 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 110819 tttcatcagatttagatgacttcttctcaaaactttcaaatcttgacgaacaaaaaccac 110760
Query: 861 aaaaacaagtatccattttccaaagaattcaagatcaattgtcaggtgcttcttcag 917 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 110759 aaaaacaagtatccattttccaaagaattcaagatcaattgtcaggtgcttcttcag 110703
Score = 739 bits (373), Expect(2) = 0.0 Identities = 373/373 (100%) Strand = Plus / Minus
Query: 1 caataatgtcatcacaaacactcaagagaagattgaatatatcgcctctcgtgaagaaga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 111619 caataatgtcatcacaaacactcaagagaagattgaatatatcgcctctcgtgaagaaga 111560
Query: 61 ttttgttaaagacgctcgtgttccattacaagaatcaaatagtacaaaaatagaacgtat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 111559 ttttgttaaagacgctcgtgttccattacaagaatcaaatagtacaaaaatagaacgtat 111500
Query: 121 tcataaaaccatggaaaagcttaccaatcctgaagctcaaccaactacttcagatcttcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 111499 tcataaaaccatggaaaagcttaccaatcctgaagctcaaccaactacttcagatcttcg 111440
Query: 181 tgaaaaaccattgactcttgtcaatagaaatcaatttgattcccttcaaacaactccatt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 111439 tgaaaaaccattgactcttgtcaatagaaatcaatttgattcccttcaaacaactccatt 111380
Query: 241 catcacaaagtctttatcatccgttgaacgtttaactaaactctttgaaacaccaactga 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 111379 catcacaaagtctttatcatccgttgaacgtttaactaaactctttgaaacaccaactga 111320
Query: 301 tgtaccattccttctctctcaaaaaccaattcctcatccattggtctcattaaaagaaag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 111319 tgtaccattccttctctctcaaaaaccaattcctcatccattggtctcattaaaagaaag 111260
Query: 361 acttccaaacctc 373 ||||||||||||| Sbjct: 111259 acttccaaacctc 111247
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 98226423 Number of Hits to DB: 1,239,908,483 Number of extensions: 74762402 Number of successful extensions: 6367224 Number of sequences better than 10.0: 125 Length of query: 917 Length of database: 98,766,808,389 Length adjustment: 24 Effective length of query: 893 Effective length of database: 96,409,374,237 Effective search space: 86093571193641 Effective search space used: 86093571193641 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.16 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
1 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
1 |
FC-IC (SUB) |
0 |