Contig-U15371-1
Contig ID Contig-U15371-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15371-1 (Contig-U15371-1Q) /CSM_Contig/Contig-U15371-1Q.Seq.d
CAATAATGTCATCACAAACACTCAAGAGAAGATTGAATATATCGCCTCTC
GTGAAGAAGATTTTGTTAAAGACGCTCGTGTTCCATTACAAGAATCAAAT
AGTACAAAAATAGAACGTATTCATAAAACCATGGAAAAGCTTACCAATCC
TGAAGCTCAACCAACTACTTCAGATCTTCGTGAAAAACCATTGACTCTTG
TCAATAGAAATCAATTTGATTCCCTTCAAACAACTCCATTCATCACAAAG
TCTTTATCATCCGTTGAACGTTTAACTAAACTCTTTGAAACACCAACTGA
TGTACCATTCCTTCTCTCTCAAAAACCAATTCCTCATCCATTGGTCTCAT
TAAAAGAAAGACTTCCAAACCTCAAAAAAAGTAATCTTGATAAAGATACA
CCAATTCACATCGATTCAGAAATCCCCGATCCAAGTAATTCAACCATTGC
CGATAAACTTGATTTAAGAAATTCATTTTCAAAAAATAAAGATTTTGAAA
ATGAAATGAAAGAACTTGATAAATTCACCACTATTAAAACTCAAAAATCT
CAAGAAGACACTATCGATAGTGATTCCAAACAATATGCCAAGGAAGCCAA
TATTGTCTTTGGTCAAAATAATATTATTCCAATTGAAGCCACTAATATTA
TTAAACCAGATATTGTATCTACAATTGATTTTATGTCAACAAAAAATATC
GATGATACATTAGCAAAAGATCAAAATACCACCCCTACTACTCAAGTCTC
TTCACTCAATATCAAATCCATTCTTAAAGATGCTAAAAACTCACCAGGTA
TTTCATCAGATTTAGATGACTTCTTCTCAAAACTTTCAAATCTTGACGAA
CAAAAACCACAAAAACAAGTATCCATTTTCCAAAGAATTCAAGATCAATT
GTCAGGTGCTTCTTCAG

Gap no gap
Contig length 917
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 7704125
End point 7703209
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 2
Link to clone list U15371
List of clone(s)

est1=FC-AK16F,1,635
est2=VFN282F,307,917
Translated Amino Acid sequence
NNVITNTQEKIEYIASREEDFVKDARVPLQESNSTKIERIHKTMEKLTNPEAQPTTSDLR
EKPLTLVNRNQFDSLQTTPFITKSLSSVERLTKLFETPTDVPFLLSQKPIPHPLVSLKER
LPNLKKSNLDKDTPIHIDSEIPDPSNSTIADKLDLRNSFSKNKDFENEMKELDKFTTIKT
QKSQEDTIDSDSKQYAKEANIVFGQNNIIPIEATNIIKPDIVSTIDFMSTKNIDDTLAKD
QNTTPTTQVSSLNIKSILKDAKNSPGISSDLDDFFSKLSNLDEQKPQKQVSIFQRIQDQL
SGASS


Translated Amino Acid sequence (All Frames)
Frame A:
q*chhkhsred*iyrls*rrfc*rrscsitrik*yknrtys*nhgkayqs*sstnyfrss
*ktidscq*ksi*fpsnnsihhkvfiir*tfn*tl*ntn*ctipslsktnsssiglikrk
tskpqkk*s**rytnshrfrnprsk*fnhcr*t*fkkfifkk*rf*k*nert**ihhy*n
skisrrhyr**fqticqgsqyclwsk*yysn*sh*yy*tryciyn*fyvnkkyr*yiskr
skyhpyysslftqyqihs*rc*kltryfirfr*lllktfks*rtkttktsihfpknsrsi
vrcff


Frame B:
NNVITNTQEKIEYIASREEDFVKDARVPLQESNSTKIERIHKTMEKLTNPEAQPTTSDLR
EKPLTLVNRNQFDSLQTTPFITKSLSSVERLTKLFETPTDVPFLLSQKPIPHPLVSLKER
LPNLKKSNLDKDTPIHIDSEIPDPSNSTIADKLDLRNSFSKNKDFENEMKELDKFTTIKT
QKSQEDTIDSDSKQYAKEANIVFGQNNIIPIEATNIIKPDIVSTIDFMSTKNIDDTLAKD
QNTTPTTQVSSLNIKSILKDAKNSPGISSDLDDFFSKLSNLDEQKPQKQVSIFQRIQDQL
SGASS


Frame C:
imssqtlkrrlnisplvkkillktlvfhyknqivqk*nvfikpwkslpilklnqllqifv
knh*llsieinlipfkqlhssqslyhplnv*lnslkhqlmyhsfslknqflihwsh*kkd
fqtskkvilikihqftsiqkspiqviqplpinli*eihfqkikilkmk*knlinspllkl
knlkktlsivipnnmprkpilslvkiilfqlkplillnqilylqlilcqqkismih*qki
kipplllkslhsisnpflkmlkthqvfhqi*mtssqnfqiltnknhknkypfskefkinc
qvllq


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15371-1 (Contig-U15371-1Q)
/CSM_Contig/Contig-U15371-1Q.Seq.d
(917 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15371-1 (Contig-U15371-1Q) /CSM_Contig/Conti... 1776 0.0
Contig-U14930-1 (Contig-U14930-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U16306-1 (Contig-U16306-1Q) /CSM_Contig/Conti... 36 0.092
Contig-U16081-1 (Contig-U16081-1Q) /CSM_Contig/Conti... 36 0.092
Contig-U12458-1 (Contig-U12458-1Q) /CSM_Contig/Conti... 36 0.092
Contig-U11030-1 (Contig-U11030-1Q) /CSM_Contig/Conti... 36 0.092
Contig-U10778-1 (Contig-U10778-1Q) /CSM_Contig/Conti... 36 0.092
Contig-U03476-1 (Contig-U03476-1Q) /CSM_Contig/Conti... 36 0.092
Contig-U16054-1 (Contig-U16054-1Q) /CSM_Contig/Conti... 34 0.36
Contig-U15968-1 (Contig-U15968-1Q) /CSM_Contig/Conti... 34 0.36

>Contig-U15371-1 (Contig-U15371-1Q) /CSM_Contig/Contig-U15371-1Q.Seq.d
Length = 917

Score = 1776 bits (896), Expect = 0.0
Identities = 910/917 (99%)
Strand = Plus / Plus


Query: 1 caataatgtcatcacaaacactcaagagaagattgaatatatcgcctctcgtgaagaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caataatgtcatcacaaacactcaagagaagattgaatatatcgcctctcgtgaagaaga 60


Query: 61 ttttgttaaagacgctcgtgttccattacaagaatcaaatagtacaaaaatagaacgtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttttgttaaagacgctcgtgttccattacaagaatcaaatagtacaaaaatagaacgtat 120


Query: 121 tcataaaaccatggaaaagcttaccaatcctgaagctcaaccaactacttcagatcttcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcataaaaccatggaaaagcttaccaatcctgaagctcaaccaactacttcagatcttcg 180


Query: 181 tgaaaaaccattgactcttgtcaatagaaatcaatttgattcccttcaaacaactccatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgaaaaaccattgactcttgtcaatagaaatcaatttgattcccttcaaacaactccatt 240


Query: 241 catcacaaagtctttatcatccgttgaacgtttaactaaactctttgaaacaccaactga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 catcacaaagtctttatcatccgttgaacgtttaactaaactctttgaaacaccaactga 300


Query: 301 tgtaccattccttctctctcaaaaaccaattcctcatccattggtctcattaaaagaaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgtaccattccttctctctcaaaaaccaattcctcatccattggtctcattaaaagaaag 360


Query: 361 acttccaaacctcnnnnnnngtaatcttgataaagatacaccaattcacatcgattcaga 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acttccaaacctcaaaaaaagtaatcttgataaagatacaccaattcacatcgattcaga 420


Query: 421 aatccccgatccaagtaattcaaccattgccgataaacttgatttaagaaattcattttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aatccccgatccaagtaattcaaccattgccgataaacttgatttaagaaattcattttc 480


Query: 481 aaaaaataaagattttgaaaatgaaatgaaagaacttgataaattcaccactattaaaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaaaaataaagattttgaaaatgaaatgaaagaacttgataaattcaccactattaaaac 540


Query: 541 tcaaaaatctcaagaagacactatcgatagtgattccaaacaatatgccaaggaagccaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tcaaaaatctcaagaagacactatcgatagtgattccaaacaatatgccaaggaagccaa 600


Query: 601 tattgtctttggtcaaaataatattattccaattgaagccactaatattattaaaccaga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tattgtctttggtcaaaataatattattccaattgaagccactaatattattaaaccaga 660


Query: 661 tattgtatctacaattgattttatgtcaacaaaaaatatcgatgatacattagcaaaaga 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tattgtatctacaattgattttatgtcaacaaaaaatatcgatgatacattagcaaaaga 720


Query: 721 tcaaaataccacccctactactcaagtctcttcactcaatatcaaatccattcttaaaga 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tcaaaataccacccctactactcaagtctcttcactcaatatcaaatccattcttaaaga 780


Query: 781 tgctaaaaactcaccaggtatttcatcagatttagatgacttcttctcaaaactttcaaa 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tgctaaaaactcaccaggtatttcatcagatttagatgacttcttctcaaaactttcaaa 840


Query: 841 tcttgacgaacaaaaaccacaaaaacaagtatccattttccaaagaattcaagatcaatt 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tcttgacgaacaaaaaccacaaaaacaagtatccattttccaaagaattcaagatcaatt 900


Query: 901 gtcaggtgcttcttcag 917
|||||||||||||||||
Sbjct: 901 gtcaggtgcttcttcag 917


>Contig-U14930-1 (Contig-U14930-1Q) /CSM_Contig/Contig-U14930-1Q.Seq.d
Length = 1570

Score = 38.2 bits (19), Expect = 0.023
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 472 ttcattttcaaaaaataaa 490
|||||||||||||||||||
Sbjct: 445 ttcattttcaaaaaataaa 463


Score = 30.2 bits (15), Expect = 5.7
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 493 ttttgaaaatgaaat 507
|||||||||||||||
Sbjct: 457 ttttgaaaatgaaat 443


>Contig-U16306-1 (Contig-U16306-1Q) /CSM_Contig/Contig-U16306-1Q.Seq.d
Length = 2938

Score = 36.2 bits (18), Expect = 0.092
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 229 aacaactccattcatcac 246
||||||||||||||||||
Sbjct: 1758 aacaactccattcatcac 1775


Score = 36.2 bits (18), Expect = 0.092
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 229 aacaactccattcatcac 246
||||||||||||||||||
Sbjct: 1258 aacaactccattcatcac 1275


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,078
Number of Sequences: 8402
Number of extensions: 17078
Number of successful extensions: 1833
Number of sequences better than 10.0: 164
length of query: 917
length of database: 8,075,542
effective HSP length: 16
effective length of query: 901
effective length of database: 7,941,110
effective search space: 7154940110
effective search space used: 7154940110
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.24
Homology vs DNA
Query= Contig-U15371-1 (Contig-U15371-1Q) /CSM_Contig/Contig-U15371-1Q.Seq.d
(917 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 1065 0.0 2
(BJ416917) Dictyostelium discoideum cDNA clone:ddv27c22, 5' ... 1057 0.0 2
(C23800) Dictyostelium discoideum gamete cDNA, clone FC-AK16. 739 0.0 2
(CU223885) Populus EST from leave. 52 0.037 1
(AC189422) Brassica rapa subsp. pekinensis clone KBrB063M21,... 46 0.11 5
(EK546185) 1095516088803 Global-Ocean-Sampling_GS-32-01-01-1... 38 0.11 2
(CP000865) Acinetobacter baumannii ACICU plasmid pACICU2, co... 44 0.26 3
(CT516176) A BAC library has been constructed from cultivar ... 44 0.47 2
(AC217333) Solanum lycopersicum chromosome 12 clone LE_HBa-2... 46 0.54 3
(AC145930) Gallus gallus BAC clone CH261-31O19 from chromoso... 48 0.58 1
(AC159877) Bos taurus clone CH240-53A17, WORKING DRAFT SEQUE... 48 0.58 1
(AC185686) Bos taurus clone RP42-53D9, WORKING DRAFT SEQUENC... 48 0.58 1
(AC164339) Bos taurus clone CH240-150J22, *** SEQUENCING IN ... 48 0.58 1
(CR963332) mth4-12G17RM1 BAC end, cultivar Jemalong A17 of M... 48 0.58 1
(CG958683) MBEJO85TRB mth2 Medicago truncatula genomic clone... 48 0.58 1
(CG953561) MBEMU25TR mth2 Medicago truncatula genomic clone ... 48 0.58 1
(CE156788) tigr-gss-dog-17000371385125 Dog Library Canis lup... 48 0.58 1
(AC179929) Strongylocentrotus purpuratus clone R3-3031D6, WO... 36 1.2 2
(AC181789) Strongylocentrotus purpuratus clone R3-1029L3, WO... 36 1.2 2
(AC177166) Strongylocentrotus purpuratus clone R3-4015K05, W... 36 1.2 2
(DY960361) CLSM10300.b1_H08.ab1 CLS(LMS) lettuce sativa Lact... 32 1.6 2
(BZ391350) EINDR71TR EI_10_12_KB Entamoeba invadens genomic ... 42 1.9 2
(AC153522) Mus musculus 10 BAC RP23-8O1 (Roswell Park Cancer... 46 2.3 1
(AC131789) Mus musculus BAC clone RP24-444D19 from 10, compl... 46 2.3 1
(AC183844) Saimiri boliviensis boliviensis clone CH254-303A1... 46 2.3 1
(AC148541) Saimiri boliviensis boliviensis clone CH254-399L1... 46 2.3 1
(AC138437) Chlorocebus aethiops clone CH252-390I5, complete ... 46 2.3 1
(AC123966) Macaca mulatta clone CH250-72H9, complete sequence. 46 2.3 1
(AC091381) Papio anubis clone RP41-468N20, complete sequence. 46 2.3 1
(CU302346) Medicago truncatula chromosome 5 clone mte1-58a14... 46 2.3 1
(AP008215) Oryza sativa (japonica cultivar-group) genomic DN... 46 2.3 1
(AP005801) Oryza sativa Japonica Group genomic DNA, chromoso... 46 2.3 1
(AM446379) Vitis vinifera contig VV78X110724.8, whole genome... 46 2.3 1
(AF226308) Ceratitis capitata microsatellite ccmic20 sequence. 46 2.3 1
(AC091093) Papio anubis clone RP41-323F4, WORKING DRAFT SEQU... 46 2.3 1
(CU468347) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.3 1
(AC216365) Solanum lycopersicum chromosome 12 clone LE_HBa-1... 46 2.3 1
(AC209024) Zea mays chromosome 4 clone CH201-65K7; ZMMBBc006... 46 2.3 1
(EJ465986) 1095403007891 Global-Ocean-Sampling_GS-28-01-01-1... 46 2.3 1
(DU316894) 1098396129122 CHORI-243 Ovis aries genomic clone ... 46 2.3 1
(CT543986) A BAC library has been constructed from cultivar ... 46 2.3 1
(CE054106) tigr-gss-dog-17000358598962 Dog Library Canis lup... 46 2.3 1
(CF358386) rm89h09.y1 Meloidogyne arenaria J2 SMART pGEM Mel... 46 2.3 1
(BQ598000) MI-P-A2-afi-h-02-1-UM.s1 MI-P-A2 Sus scrofa cDNA ... 46 2.3 1
(FE577930) CAXG10900.rev Amphioxus Branchiostoma floridae un... 46 2.3 1
(AC195450) Glycine tomentella clone gtt1-310p22, complete se... 36 2.4 6
(AC092744) Homo sapiens chromosome 12 clone RP11-23B17, WORK... 34 3.1 6
(AM426159) Vitis vinifera contig VV78X077693.6, whole genome... 38 3.5 4
(AL083430) Arabidopsis thaliana genome survey sequence T7 en... 34 3.6 3
(AC154489) Mus musculus BAC clone RP23-205G15 from chromosom... 34 4.3 2
(AC010207) Homo sapiens 3 BAC RP11-375I20 (Roswell Park Canc... 34 4.4 2
(CU861529) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 4.4 2
(AM438608) Vitis vinifera contig VV78X052328.11, whole genom... 42 4.4 3
(BX294194) Mouse DNA sequence from clone RP23-342D10 on chro... 34 4.4 2
(AC196783) MACACA MULATTA BAC clone CH250-311C18 from chromo... 36 4.6 7
(AC023428) Mus musculus clone RP23-313E24, *** SEQUENCING IN... 34 4.7 2
(EJ032059) 1095454049770 Global-Ocean-Sampling_GS-26-01-01-1... 42 4.7 2
(CS604413) Sequence 3399 from Patent WO2007039234. 36 5.1 2
(CS602765) Sequence 1751 from Patent WO2007039234. 36 5.1 2
(AK052097) Mus musculus 12 days embryo eyeball cDNA, RIKEN f... 34 5.6 2
(DN572753) 92277775 Sea Urchin primary mesenchyme cell cDNA ... 32 5.8 2
(DN569457) 93863476 Sea Urchin primary mesenchyme cell cDNA ... 32 5.8 2
(BH582211) BOGGR56TF BOGG Brassica oleracea genomic clone BO... 42 6.1 2
(CL722839) OR_BBa0051N04.r OR_BBa Oryza nivara genomic clone... 36 6.1 2
(EK387102) 1095469487567 Global-Ocean-Sampling_GS-31-01-01-1... 40 6.4 2
(AC143339) Medicago truncatula clone mth2-20g20, complete se... 42 6.6 4
(FH638687) CHO_OF4578xl20f1.ab1 CHO_OF4 Nicotiana tabacum ge... 36 6.7 2
(EJ735068) 1092961100195 Global-Ocean-Sampling_GS-30-02-01-1... 36 7.0 2
(FH638767) CHO_OF4578xl20r1.ab1 CHO_OF4 Nicotiana tabacum ge... 36 7.1 2
(AM439839) Vitis vinifera contig VV78X236146.14, whole genom... 40 7.4 2
(ER416397) 1092963672359 Global-Ocean-Sampling_GS-35-01-01-1... 42 7.8 2
(EA687478) Sequence 66357 from patent US 7365185. 36 8.2 3
(DN567472) 90193332 Sea Urchin primary mesenchyme cell cDNA ... 38 8.3 2
(CR312767) mte1-35B23RM1 BAC end, cultivar Jemalong A17 of M... 40 8.6 2
(AC201857) Gallus gallus BAC clone CH261-97O8 from chromosom... 44 9.1 1
(AC193635) Gallus gallus BAC clone CH261-110K21 from chromos... 44 9.1 1
(AC148021) Mus musculus BAC clone RP23-9A7 from chromosome 1... 44 9.1 1
(AC134830) Mus musculus BAC clone RP24-498G16 from chromosom... 44 9.1 1
(AC102168) Mus musculus chromosome 7, clone RP23-452N21, com... 44 9.1 1
(CU062644) M.truncatula DNA sequence from clone MTH2-155M7 o... 44 9.1 1
(AM423646) Vitis vinifera contig VV78X222652.5, whole genome... 44 9.1 1
(AL161492) Arabidopsis thaliana DNA chromosome 4, contig fra... 44 9.1 1
(AF069300) Arabidopsis thaliana BAC F3D13. 44 9.1 1
(AL355495) Human DNA sequence from clone RP11-53N12 on chrom... 44 9.1 1
(AC137305) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 44 9.1 1
(AC108661) Rattus norvegicus clone CH230-231H7, WORKING DRAF... 44 9.1 1
(AC101192) Mus musculus clone RP23-177A19, LOW-PASS SEQUENCE... 44 9.1 1
(AC098346) Rattus norvegicus clone CH230-1O1, *** SEQUENCING... 44 9.1 1
(CU582784) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.1 1
(CU468465) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.1 1
(AC232824) Lama pacos clone CH246-360M16, WORKING DRAFT SEQU... 44 9.1 1
(AC232721) Lama pacos clone CH246-275J9, WORKING DRAFT SEQUE... 44 9.1 1
(AC232590) Brassica rapa subsp. pekinensis clone KBrH089C20,... 44 9.1 1
(AC231466) Choloepus hoffmanni clone CH281-360O8, WORKING DR... 44 9.1 1
(AC231461) Choloepus hoffmanni clone CH281-208D11, WORKING D... 44 9.1 1
(AC174538) Bos taurus clone CH240-90K21, WORKING DRAFT SEQUE... 44 9.1 1
(AC164396) Mus musculus chromosome 7 clone RP23-384M11 map 7... 44 9.1 1
(FI294159) AdH1026-CPY2-A17TF AdH1 Arachis duranensis genomi... 44 9.1 1
(FI067562) CHO_OF7305xg03r1.ab1 CHO_OF7 Nicotiana tabacum ge... 44 9.1 1
(FH959180) CHO_OF6770xi20f1.ab1 CHO_OF6 Nicotiana tabacum ge... 44 9.1 1
(FH657714) CHO_OF4406xn07r1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 9.1 1
(FH657642) CHO_OF4406xn07f1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 9.1 1
(FH314170) CHO_OF4483xj05r1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 9.1 1
(FH314083) CHO_OF4483xj05f1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 9.1 1
(FH043854) CHO_OF3183xc03r1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 9.1 1
(ET904328) CHO_OF365xh02f1.ab1 CHO_OF Nicotiana tabacum geno... 44 9.1 1
(ET866375) CHO_OF315xm10f1.ab1 CHO_OF Nicotiana tabacum geno... 44 9.1 1
(ET833585) CHO_OF796xn19r1.ab1 CHO_OF Nicotiana tabacum geno... 44 9.1 1
(ET767053) CHO_OF187xa09r1.ab1 CHO_OF Nicotiana tabacum geno... 44 9.1 1
(EJ949290) 1093018932983 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.1 1
(AL952400) Arabidopsis thaliana T-DNA flanking sequence GK-3... 44 9.1 1
(EJ036057) 1095454069180 Global-Ocean-Sampling_GS-26-01-01-1... 44 9.1 1
(EI824086) POTG048TR Solanum tuberosum RHPOTKEY BAC ends Sol... 44 9.1 1
(DU795704) APKH6051.g2 HF770_12-21-03 uncultured marine micr... 44 9.1 1
(CU849294) A BAC library has been constructed from PN40024 g... 44 9.1 1
(CU820896) A BAC library has been constructed from PN40024 g... 44 9.1 1
(CE720006) tigr-gss-dog-17000315118790 Dog Library Canis lup... 44 9.1 1
(CE588922) tigr-gss-dog-17000366373816 Dog Library Canis lup... 44 9.1 1
(EC005422) 7400302 CE04 Caenorhabditis elegans cDNA clone 27... 44 9.1 1
(CF788857) 860847 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence. 44 9.1 1
(FD322804) CBPN11009.b1 CBPN: Subtracted channel catfish cDN... 44 9.1 1
(CP000817) Lysinibacillus sphaericus C3-41, complete genome. 44 9.1 1
(CP000153) Sulfurimonas denitrificans DSM 1251, complete gen... 44 9.1 1
(BX248583) Blochmannia floridanus complete genome. 44 9.1 1
(AC119811) Mus musculus chromosome 15, clone RP23-79P13, com... 36 9.2 6

>(AC116977) Dictyostelium discoideum chromosome 2 map 5515173-5817331
strain AX4, complete sequence.
Length = 302156

Score = 1065 bits (537), Expect(2) = 0.0
Identities = 537/537 (100%)
Strand = Plus / Minus


Query: 381 gtaatcttgataaagatacaccaattcacatcgattcagaaatccccgatccaagtaatt 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111239 gtaatcttgataaagatacaccaattcacatcgattcagaaatccccgatccaagtaatt 111180


Query: 441 caaccattgccgataaacttgatttaagaaattcattttcaaaaaataaagattttgaaa 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111179 caaccattgccgataaacttgatttaagaaattcattttcaaaaaataaagattttgaaa 111120


Query: 501 atgaaatgaaagaacttgataaattcaccactattaaaactcaaaaatctcaagaagaca 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111119 atgaaatgaaagaacttgataaattcaccactattaaaactcaaaaatctcaagaagaca 111060


Query: 561 ctatcgatagtgattccaaacaatatgccaaggaagccaatattgtctttggtcaaaata 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111059 ctatcgatagtgattccaaacaatatgccaaggaagccaatattgtctttggtcaaaata 111000


Query: 621 atattattccaattgaagccactaatattattaaaccagatattgtatctacaattgatt 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110999 atattattccaattgaagccactaatattattaaaccagatattgtatctacaattgatt 110940


Query: 681 ttatgtcaacaaaaaatatcgatgatacattagcaaaagatcaaaataccacccctacta 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110939 ttatgtcaacaaaaaatatcgatgatacattagcaaaagatcaaaataccacccctacta 110880


Query: 741 ctcaagtctcttcactcaatatcaaatccattcttaaagatgctaaaaactcaccaggta 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110879 ctcaagtctcttcactcaatatcaaatccattcttaaagatgctaaaaactcaccaggta 110820


Query: 801 tttcatcagatttagatgacttcttctcaaaactttcaaatcttgacgaacaaaaaccac 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110819 tttcatcagatttagatgacttcttctcaaaactttcaaatcttgacgaacaaaaaccac 110760


Query: 861 aaaaacaagtatccattttccaaagaattcaagatcaattgtcaggtgcttcttcag 917
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110759 aaaaacaagtatccattttccaaagaattcaagatcaattgtcaggtgcttcttcag 110703

Score = 739 bits (373), Expect(2) = 0.0
Identities = 373/373 (100%)
Strand = Plus / Minus


Query: 1 caataatgtcatcacaaacactcaagagaagattgaatatatcgcctctcgtgaagaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111619 caataatgtcatcacaaacactcaagagaagattgaatatatcgcctctcgtgaagaaga 111560


Query: 61 ttttgttaaagacgctcgtgttccattacaagaatcaaatagtacaaaaatagaacgtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111559 ttttgttaaagacgctcgtgttccattacaagaatcaaatagtacaaaaatagaacgtat 111500


Query: 121 tcataaaaccatggaaaagcttaccaatcctgaagctcaaccaactacttcagatcttcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111499 tcataaaaccatggaaaagcttaccaatcctgaagctcaaccaactacttcagatcttcg 111440


Query: 181 tgaaaaaccattgactcttgtcaatagaaatcaatttgattcccttcaaacaactccatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111439 tgaaaaaccattgactcttgtcaatagaaatcaatttgattcccttcaaacaactccatt 111380


Query: 241 catcacaaagtctttatcatccgttgaacgtttaactaaactctttgaaacaccaactga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111379 catcacaaagtctttatcatccgttgaacgtttaactaaactctttgaaacaccaactga 111320


Query: 301 tgtaccattccttctctctcaaaaaccaattcctcatccattggtctcattaaaagaaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111319 tgtaccattccttctctctcaaaaaccaattcctcatccattggtctcattaaaagaaag 111260


Query: 361 acttccaaacctc 373
|||||||||||||
Sbjct: 111259 acttccaaacctc 111247

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,239,908,483
Number of extensions: 74762402
Number of successful extensions: 6367224
Number of sequences better than 10.0: 125
Length of query: 917
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 893
Effective length of database: 96,409,374,237
Effective search space: 86093571193641
Effective search space used: 86093571193641
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.16
Homology vs Protein
Query= Contig-U15371-1 (Contig-U15371-1Q) /CSM_Contig/Contig-U15371-1Q.Seq.d
(917 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC116977_40(AC116977|pid:none) Dictyostelium discoideum chromoso... 560 e-158
CP000393_3406(CP000393|pid:none) Trichodesmium erythraeum IMS101... 40 0.14
(Q54PK9) RecName: Full=3-phosphoinositide-dependent protein kina... 39 0.19
DQ321772_1(DQ321772|pid:none) Trichomonas vaginalis strain NIH-C... 39 0.19
CP000806_1608(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 39 0.25
FN357386_1(FN357386|pid:none) Schistosoma mansoni genome sequenc... 39 0.25
DQ126335_1(DQ126335|pid:none) Pseudosciaena crocea heat shock pr... 39 0.25
CR940352_449(CR940352|pid:none) Theileria annulata strain Ankara... 39 0.32
CP001047_47(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, c... 38 0.42
T38495(T38495)hypothetical protein SPAC29B12.07 - fission yeast ... 38 0.42
AE014187_81(AE014187|pid:none) Plasmodium falciparum 3D7 chromos... 38 0.55
AK065681_1(AK065681|pid:none) Oryza sativa Japonica Group cDNA c... 38 0.55
CP001047_455(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ... 38 0.55
CP000685_1000(CP000685|pid:none) Flavobacterium johnsoniae UW101... 37 0.71
CP000502_337(CP000502|pid:none) Pichia stipitis CBS 6054 chromos... 37 0.93
BC075338_1(BC075338|pid:none) Xenopus tropicalis erythrocyte mem... 37 0.93
EF539208_1(EF539208|pid:none) Danio rerio gravin mRNA, complete ... 37 0.93
CP000724_2515(CP000724|pid:none) Alkaliphilus metalliredigens QY... 37 0.93
CR380951_45(CR380951|pid:none) Candida glabrata strain CBS138 ch... 37 1.2
CP000733_1870(CP000733|pid:none) Coxiella burnetii Dugway 5J108-... 37 1.2
CU041395_2(CU041395|pid:none) Zebrafish DNA sequence from clone ... 37 1.2
AC116977_59(AC116977|pid:none) Dictyostelium discoideum chromoso... 36 1.6
BA000023_2034(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA,... 36 1.6
(A8Z414) RecName: Full=Extracellular matrix-binding protein ebh;... 36 1.6
M94370_1(M94370|pid:none) Stigmatella aurantiaca sigma factor (s... 36 1.6
CU928178_49(CU928178|pid:none) Zygosaccharomyces rouxii strain C... 36 1.6
AL844509_475(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 36 1.6
(Q5HFY8) RecName: Full=Extracellular matrix-binding protein ebh;... 36 1.6
CP001047_264(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ... 36 1.6
EU677193_26(EU677193|pid:none) Oedogonium cardiacum strain SAG 5... 36 1.6
AM180088_1471(AM180088|pid:none) Haloquadratum walsbyi DSM 16790... 36 2.1
EU286923_1(EU286923|pid:none) Plasmodium falciparum isolate RN23... 36 2.1
FN392320_747(FN392320|pid:none) Pichia pastoris GS115 chromosome... 36 2.1
AE017125_272(AE017125|pid:none) Helicobacter hepaticus ATCC 5144... 36 2.1
CR382137_762(CR382137|pid:none) Debaryomyces hansenii strain CBS... 36 2.1
EU286893_1(EU286893|pid:none) Plasmodium falciparum isolate K59 ... 36 2.1
EU286943_1(EU286943|pid:none) Plasmodium falciparum isolate B5 s... 36 2.1
BA000038_946(BA000038|pid:none) Vibrio vulnificus YJ016 DNA, chr... 35 2.7
CP000023_1271(CP000023|pid:none) Streptococcus thermophilus LMG ... 35 2.7
AL844506_217(AL844506|pid:none) Plasmodium falciparum 3D7 chromo... 35 2.7
(Q923L0) RecName: Full=Pericentriolar material 1 protein; ... 35 2.7
(Q6GGX3) RecName: Full=Extracellular matrix-binding protein ebh;... 35 2.7
BC142938_1(BC142938|pid:none) Danio rerio zinc finger and BTB do... 35 2.7
AE014134_926(AE014134|pid:none) Drosophila melanogaster chromoso... 35 2.7
AB070110_1(AB070110|pid:none) Macaca fascicularis testis cDNA cl... 35 2.7
EU286850_1(EU286850|pid:none) Plasmodium falciparum isolate AF3 ... 35 2.7
I51298(I51298;I51191) transforming protein sno-N - chicken &S53... 35 2.7
AB079534_1(AB079534|pid:none) Sarcophaga crassipalpis tim mRNA f... 35 2.7
(Q5UQF9) RecName: Full=Uncharacterized protein L487; &AY653733_... 35 2.7
CP000764_465(CP000764|pid:none) Bacillus cereus subsp. cytotoxis... 35 2.7
(O74424) RecName: Full=Nucleoporin nup211; AltName: Full=Nuclear... 35 2.7
AF000198_2(AF000198|pid:none) Caenorhabditis elegans cosmid T28F... 35 2.7
AE014297_4528(AE014297|pid:none) Drosophila melanogaster chromos... 35 2.7
AM406671_863(AM406671|pid:none) Lactococcus lactis subsp. cremor... 35 2.7
B71607(B71607)hypothetical protein PFB0740c - malaria parasite (... 35 2.7
(A7X2C3) RecName: Full=Extracellular matrix-binding protein ebhA... 35 2.7
EU286859_1(EU286859|pid:none) Plasmodium falciparum isolate B111... 35 2.7
CR940352_383(CR940352|pid:none) Theileria annulata strain Ankara... 35 2.7
EU286891_1(EU286891|pid:none) Plasmodium falciparum isolate B91 ... 35 2.7
CP000918_1009(CP000918|pid:none) Streptococcus pneumoniae 70585,... 35 3.5
CP000920_947(CP000920|pid:none) Streptococcus pneumoniae P1031, ... 35 3.5
BA000026_153(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c... 35 3.5
AF352180_1(AF352180|pid:none) Mus musculus pericentriolar materi... 35 3.5
AL844509_281(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 35 3.5
(Q5UQ16) RecName: Full=Uncharacterized protein L201; &AY653733_... 35 3.5
CP000919_917(CP000919|pid:none) Streptococcus pneumoniae JJA, co... 35 3.5
DQ993347_1(DQ993347|pid:none) Danio rerio Kaiso gene, partial cds. 35 3.5
AF348167_1(AF348167|pid:none) Caenorhabditis elegans Pelle IRAK-... 35 3.5
CR382127_446(CR382127|pid:none) Yarrowia lipolytica strain CLIB1... 35 3.5
AE007317_931(AE007317|pid:none) Streptococcus pneumoniae R6, com... 35 3.5
AB246782_1(AB246782|pid:none) Bubalus carabanensis IL-1a mRNA fo... 35 4.6
AJ938182_1598(AJ938182|pid:none) Staphylococcus aureus RF122 com... 35 4.6
(Q06604) RecName: Full=Protein BSP1; AltName: Full=Binding of sy... 35 4.6
CP000057_1026(CP000057|pid:none) Haemophilus influenzae 86-028NP... 35 4.6
AM920428_479(AM920428|pid:none) Penicillium chrysogenum Wisconsi... 35 4.6
CP000083_4247(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 35 4.6
CP000653_397(CP000653|pid:none) Enterobacter sp. 638, complete g... 35 4.6
BC068815_1(BC068815|pid:none) Xenopus laevis similar to serologi... 35 4.6
AE016828_1889(AE016828|pid:none) Coxiella burnetii RSA 493, comp... 35 4.6
CP000814_794(CP000814|pid:none) Campylobacter jejuni subsp. jeju... 35 4.6
(Q3HWU1) RecName: Full=Interleukin-1 alpha; Short=IL-1 ... 35 4.6
BC095200_1(BC095200|pid:none) Danio rerio calcium binding and co... 34 6.1
CR380958_296(CR380958|pid:none) Candida glabrata strain CBS138 c... 34 6.1
AP009351_1637(AP009351|pid:none) Staphylococcus aureus subsp. au... 34 6.1
AP009324_1725(AP009324|pid:none) Staphylococcus aureus subsp. au... 34 6.1
AE014296_1383(AE014296|pid:none) Drosophila melanogaster chromos... 34 6.1
AE014296_1379(AE014296|pid:none) Drosophila melanogaster chromos... 34 6.1
(Q86I06) RecName: Full=Probable serine/threonine-protein kinase ... 34 6.1
EU286942_1(EU286942|pid:none) Plasmodium falciparum isolate AM22... 34 6.1
U94410_1(U94410|pid:none) Dictyostelium discoideum plasmid Ddp6 ... 34 6.1
AE014135_141(AE014135|pid:none) Drosophila melanogaster chromoso... 34 6.1
B88561(B88561)protein F58A4.7b [imported] - Caenorhabditis elegans 34 6.1
AB080235_1(AB080235|pid:none) Sarcophaga bullata TIM mRNA for ti... 34 6.1
AL844504_238(AL844504|pid:none) Plasmodium falciparum 3D7 chromo... 34 6.1
CP000255_1656(CP000255|pid:none) Staphylococcus aureus subsp. au... 34 6.1
Z22179_11(Z22179|pid:none) Caenorhabditis elegans Cosmid F58A4, ... 34 6.1
CP000771_1641(CP000771|pid:none) Fervidobacterium nodosum Rt17-B... 34 6.1
AM494972_655(AM494972|pid:none) Leishmania braziliensis chromoso... 34 6.1
CP000730_1689(CP000730|pid:none) Staphylococcus aureus subsp. au... 34 6.1
AE014296_1377(AE014296|pid:none) Drosophila melanogaster chromos... 34 6.1
AL844505_247(AL844505|pid:none) Plasmodium falciparum 3D7 chromo... 34 6.1
AE014296_1376(AE014296|pid:none) Drosophila melanogaster chromos... 34 6.1
(Q8NWQ6) RecName: Full=Extracellular matrix-binding protein ebh;... 34 6.1
AE014135_139(AE014135|pid:none) Drosophila melanogaster chromoso... 34 6.1
EU961549_1(EU961549|pid:none) Zea mays clone 236431 calmodulin b... 34 6.1
AF332975_1(AF332975|pid:none) Homo sapiens zonadhesin variant 1 ... 34 7.9
BC039299_1(BC039299|pid:none) Homo sapiens stress-induced-phosph... 34 7.9
AF332980_1(AF332980|pid:none) Homo sapiens zonadhesin variant 6 ... 34 7.9
CP001433_50(CP001433|pid:none) Borrelia valaisiana VS116 plasmid... 34 7.9
(Q6XHA6) RecName: Full=Probable inactive serine/threonine-protei... 34 7.9
(Q54TD7) RecName: Full=ATP-dependent RNA helicase ddx24; ... 34 7.9
AF053356_1(AF053356|pid:none) Homo sapiens chromosome 7q22 seque... 34 7.9
CR382139_1042(CR382139|pid:none) Debaryomyces hansenii strain CB... 34 7.9
AF332977_1(AF332977|pid:none) Homo sapiens zonadhesin variant 3 ... 34 7.9
AK291555_1(AK291555|pid:none) Homo sapiens cDNA FLJ76863 complet... 34 7.9
AJ544269_1(AJ544269|pid:none) Barley mild mosaic virus gene for ... 34 7.9
CP000099_2139(CP000099|pid:none) Methanosarcina barkeri str. Fus... 34 7.9
CP000937_1539(CP000937|pid:none) Francisella philomiragia subsp.... 34 7.9
AY046055_4(AY046055|pid:none) Homo sapiens zonadhesin (ZAN) gene... 34 7.9
AE014613_4166(AE014613|pid:none) Salmonella enterica subsp. ente... 34 7.9
CP000675_1092(CP000675|pid:none) Legionella pneumophila str. Cor... 34 7.9
(P31948) RecName: Full=Stress-induced-phosphoprotein 1; ... 34 7.9
AF536943_1(AF536943|pid:none) Barley mild mosaic virus segment R... 34 7.9
AF332979_1(AF332979|pid:none) Homo sapiens zonadhesin variant 5 ... 34 7.9
BX842648_236(BX842648|pid:none) Bdellovibrio bacteriovorus compl... 34 7.9
AL035476_23(AL035476|pid:none) Plasmodium falciparum MAL4P3. &A... 34 7.9
AY046055_6(AY046055|pid:none) Homo sapiens zonadhesin (ZAN) gene... 34 7.9
CR382139_1150(CR382139|pid:none) Debaryomyces hansenii chromosom... 34 7.9

>AC116977_40(AC116977|pid:none) Dictyostelium discoideum chromosome 2
map 5515173-5817331 strain AX4, complete sequence.
Length = 1117

Score = 560 bits (1444), Expect = e-158
Identities = 290/305 (95%), Positives = 290/305 (95%)
Frame = +2

Query: 2 NNVITNTQEKIEYIASREEDFVKDARVPLQESNSTKIERIHKTMEKLTNPEAQPTTSDLR 181
NNVITNTQEKIEYIASREEDFVKDARVPLQESNSTKIERIHKTMEKLTNPEAQPTTSDLR
Sbjct: 531 NNVITNTQEKIEYIASREEDFVKDARVPLQESNSTKIERIHKTMEKLTNPEAQPTTSDLR 590

Query: 182 EKPLTLVNRNQFDSLQTTPFITKSLSSVERLTKLFETPTDVPFLLSQKPIPHPLVSLKER 361
EKPLTLVNRNQFDSLQTTPFITKSLSSVERLTKLFETPTDVPFLLSQKPIPHPLVSLKER
Sbjct: 591 EKPLTLVNRNQFDSLQTTPFITKSLSSVERLTKLFETPTDVPFLLSQKPIPHPLVSLKER 650

Query: 362 LPNLKKSNLDKDTPIHIDSEIPDPSNSTIADKLDLRNSFSKNKDFENEMKELDKFTTIKT 541
LPNLKKSNLDKDTPIHIDSEIPDPSNSTIADKLDLRNSFSKNKDFENEMKELDKFTTIKT
Sbjct: 651 LPNLKKSNLDKDTPIHIDSEIPDPSNSTIADKLDLRNSFSKNKDFENEMKELDKFTTIKT 710

Query: 542 QKSQEDTIDSDSKQYAKEANIVFGQNNIIPIEATNIIKPDIVSTIDFMSTKNIDDTLAKD 721
QKSQEDTIDSDSKQYAKEANIVFGQNNIIPIEATNIIKPDIVSTIDFMSTKNIDDTLAKD
Sbjct: 711 QKSQEDTIDSDSKQYAKEANIVFGQNNIIPIEATNIIKPDIVSTIDFMSTKNIDDTLAKD 770

Query: 722 QNTTPTTQVSSLNIKSILKDAKNSPGIXXXXXXXXXXXXXXXEQKPQKQVSIFQRIQDQL 901
QNTTPTTQVSSLNIKSILKDAKNSPGI EQKPQKQVSIFQRIQDQL
Sbjct: 771 QNTTPTTQVSSLNIKSILKDAKNSPGISSDLDDFFSKLSNLDEQKPQKQVSIFQRIQDQL 830

Query: 902 SGASS 916
SGASS
Sbjct: 831 SGASS 835

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,404,595,044
Number of extensions: 28307940
Number of successful extensions: 70356
Number of sequences better than 10.0: 130
Number of HSP's gapped: 70238
Number of HSP's successfully gapped: 132
Length of query: 305
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 177
Effective length of database: 636,901,312
Effective search space: 112731532224
Effective search space used: 112731532224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.54 gvh: 0.23 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
24.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for Contig-U15371-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0