>Contig-U15360-1 (Contig-U15360-1Q) /CSM_Contig/Contig-U15360-1Q.Seq.d
TCTTACATTTTAATGTATACTTTAACCATTTGGAACGTGAAGAGGACTTT
AAAATCATAAGAGGGGTCGATAGAATTAGAGTTTCAAGTGAGAATAATTA
TCAACATCCAGAGGGTGAGAATGATAATCAACAAGTGAAAGAGATTATTA
ACTTTTCCAATGAAAATCAGTTCCTAAGATTGAATGCATACCAAAACAGA
ACTTTTAATTGCAGTAAATTCGTTCTTGGTCAAGTACCTGTAATTTTGGA
GAAGATCATTAAATTGGAAACTGAAAAGAATCCATCGACTCCAATTAACA
TTGGTATCATTTTAAATAACCTTTATAAATCTTCAAATATTAAAAATCCA
TTACATTTTCATCAACTTCAAGATTTTGATCATATGGTTTTAAATAAATT
AAAGAGTCATTTCGGTGATGATAATGTAAAGGTTTGCTCATTCTTAATTC
ACTTCCCAAAGCCATTCGTACCTCAAATCGATGAGGATGATGAAGATGCT
CAACCTCCACCACCTCAAAATCCTGAAGATTTAAAACCAAGAATTGAAAT
GATAAATGCTAAAGTAGTTAATGGTTTCAATAGAGTTATGAAAGATACTA
AAACTTTATTATTTTTAAGTTCTTCAAAATATTTAGATTTAAAAAGTATT
CATTCAAAACCAATTATGACAAATGATTCACAAGAATTTGAAGAAGTTGG
TTGTTTTTCTGCAATCATGGTATTAAATGATAAAAATAATAAAAAATAAT
AATTTAAAAAATAATAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA

est1=CHG389Z,1,756
est2=CHQ224Z,43,645
est3=SFC864Z,73,717
est4=VFI605Z,125,798
est5=SHE488Z,232,442
est6=SSG141Z,425,798

LHFNVYFNHLEREEDFKIIRGVDRIRVSSENNYQHPEGENDNQQVKEIINFSNENQFLRL
NAYQNRTFNCSKFVLGQVPVILEKIIKLETEKNPSTPINIGIILNNLYKSSNIKNPLHFH
QLQDFDHMVLNKLKSHFGDDNVKVCSFLIHFPKPFVPQIDEDDEDAQPPPPQNPEDLKPR
IEMINAKVVNGFNRVMKDTKTLLFLSSSKYLDLKSIHSKPIMTNDSQEFEEVGCFSAIMV
LNDKNNKK**fkk**fkkkkkkkkk

Frame A:
syilmytltiwnvkrtlks*egsielefqvriiiniqrvrmiink*krlltfpmkiss*d
*mhtktelliavnsflvkyl*fwrrslnwklkrihrlqltlvsf*itfinlqilkihyif
infkiliiwf*in*rvisvmim*rfahs*ftsqshsylksmrmmkmlnlhhlkilki*nq
elk**mlk*lmvsiel*kilklyyf*vlqni*i*kvfiqnql*qmihknlkklvvflqsw
y*mikiiknnnlknnnlkkkkkkkkk


Frame B:
ltf*cil*pfgt*rgl*nhkrgr*n*sfk*e*lstsrg*e**stserdy*lfq*ksvpki
ecipkqnf*lq*irswsstcnfgedh*ign*kesidsn*hwyhfk*pl*ifky*ksitfs
stsrf*sygfk*ikesfr***ckgllilnslpkairtsnr*g**rcststtsks*rfktk
n*ndkc*ss*wfq*syery*nfiifkffkifrfkkysfktnydk*ftri*rswlffcnhg
ik**k**kiii*kiii*kkkkkkkk


Frame C:
LHFNVYFNHLEREEDFKIIRGVDRIRVSSENNYQHPEGENDNQQVKEIINFSNENQFLRL
NAYQNRTFNCSKFVLGQVPVILEKIIKLETEKNPSTPINIGIILNNLYKSSNIKNPLHFH
QLQDFDHMVLNKLKSHFGDDNVKVCSFLIHFPKPFVPQIDEDDEDAQPPPPQNPEDLKPR
IEMINAKVVNGFNRVMKDTKTLLFLSSSKYLDLKSIHSKPIMTNDSQEFEEVGCFSAIMV
LNDKNNKK**fkk**fkkkkkkkkk

Query= Contig-U15360-1 (Contig-U15360-1Q)
/CSM_Contig/Contig-U15360-1Q.Seq.d
         (798 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15360-1 (Contig-U15360-1Q) /CSM_Contig/Conti...  1431  0.0
Contig-U03715-1 (Contig-U03715-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U03277-1 (Contig-U03277-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U15193-1 (Contig-U15193-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U12528-1 (Contig-U12528-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U09396-1 (Contig-U09396-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U08202-1 (Contig-U08202-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U16152-1 (Contig-U16152-1Q) /CSM_Contig/Conti...    36  0.080
Contig-U15949-1 (Contig-U15949-1Q) /CSM_Contig/Conti...    36  0.080
Contig-U15642-1 (Contig-U15642-1Q) /CSM_Contig/Conti...    36  0.080

>Contig-U15360-1 (Contig-U15360-1Q) /CSM_Contig/Contig-U15360-1Q.Seq.d
          Length = 798

 Score = 1431 bits (722), Expect = 0.0
 Identities = 722/722 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttacattttaatgtatactttaaccatttggaacgtgaagaggactttaaaatcataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tcttacattttaatgtatactttaaccatttggaacgtgaagaggactttaaaatcataa 60

                                                                       
Query: 61  gaggggtcgatagaattagagtttcaagtgagaataattatcaacatccagagggtgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gaggggtcgatagaattagagtttcaagtgagaataattatcaacatccagagggtgaga 120

                                                                       
Query: 121 atgataatcaacaagtgaaagagattattaacttttccaatgaaaatcagttcctaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgataatcaacaagtgaaagagattattaacttttccaatgaaaatcagttcctaagat 180

                                                                       
Query: 181 tgaatgcataccaaaacagaacttttaattgcagtaaattcgttcttggtcaagtacctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgaatgcataccaaaacagaacttttaattgcagtaaattcgttcttggtcaagtacctg 240

                                                                       
Query: 241 taattttggagaagatcattaaattggaaactgaaaagaatccatcgactccaattaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taattttggagaagatcattaaattggaaactgaaaagaatccatcgactccaattaaca 300

                                                                       
Query: 301 ttggtatcattttaaataacctttataaatcttcaaatattaaaaatccattacattttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttggtatcattttaaataacctttataaatcttcaaatattaaaaatccattacattttc 360

                                                                       
Query: 361 atcaacttcaagattttgatcatatggttttaaataaattaaagagtcatttcggtgatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atcaacttcaagattttgatcatatggttttaaataaattaaagagtcatttcggtgatg 420

                                                                       
Query: 421 ataatgtaaaggtttgctcattcttaattcacttcccaaagccattcgtacctcaaatcg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ataatgtaaaggtttgctcattcttaattcacttcccaaagccattcgtacctcaaatcg 480

                                                                       
Query: 481 atgaggatgatgaagatgctcaacctccaccacctcaaaatcctgaagatttaaaaccaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atgaggatgatgaagatgctcaacctccaccacctcaaaatcctgaagatttaaaaccaa 540

                                                                       
Query: 541 gaattgaaatgataaatgctaaagtagttaatggtttcaatagagttatgaaagatacta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaattgaaatgataaatgctaaagtagttaatggtttcaatagagttatgaaagatacta 600

                                                                       
Query: 601 aaactttattatttttaagttcttcaaaatatttagatttaaaaagtattcattcaaaac 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aaactttattatttttaagttcttcaaaatatttagatttaaaaagtattcattcaaaac 660

                                                                       
Query: 661 caattatgacaaatgattcacaagaatttgaagaagttggttgtttttctgcaatcatgg 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 caattatgacaaatgattcacaagaatttgaagaagttggttgtttttctgcaatcatgg 720

             
Query: 721 ta 722
           ||
Sbjct: 721 ta 722


>Contig-U03715-1 (Contig-U03715-1Q) /CSM_Contig/Contig-U03715-1Q.Seq.d
          Length = 1132

 Score = 40.1 bits (20), Expect = 0.005
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 380 tcatatggttttaaataaattaaa 403
           |||| |||||||||||||||||||
Sbjct: 783 tcatttggttttaaataaattaaa 806


>Contig-U03277-1 (Contig-U03277-1Q) /CSM_Contig/Contig-U03277-1Q.Seq.d
          Length = 1073

 Score = 40.1 bits (20), Expect = 0.005
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 501 caacctccaccacctcaaaa 520
           ||||||||||||||||||||
Sbjct: 142 caacctccaccacctcaaaa 161


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,426
Number of Sequences: 8402
Number of extensions: 20426
Number of successful extensions: 2589
Number of sequences better than 10.0: 273
length of query: 798
length of database: 8,075,542
effective HSP length: 16
effective length of query: 782
effective length of database: 7,941,110
effective search space: 6209948020
effective search space used: 6209948020
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)

Query= Contig-U15360-1 (Contig-U15360-1Q) /CSM_Contig/Contig-U15360-1Q.Seq.d
         (798 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ379401) Dictyostelium discoideum cDNA clone:ddc34b23, 3' ...  1427   0.0    1
(BJ399615) Dictyostelium discoideum cDNA clone:dds6p16, 3' e...  1191   0.0    3
(BJ385213) Dictyostelium discoideum cDNA clone:ddc54o06, 3' ...  1158   0.0    1
(BJ432238) Dictyostelium discoideum cDNA clone:ddv18i02, 3' ...  1102   0.0    1
(C90050) Dictyostelium discoideum slug cDNA, clone SSG141.        585   e-162  1
(BJ405781) Dictyostelium discoideum cDNA clone:dds32p22, 3' ...   198   2e-85  2
(BX510994) Zebrafish DNA sequence from clone CH211-51F10 in ...    42   0.12   6
(ER968547) AF__Bc0022B23f AF__Bc Aquilegia formosa genomic, ...    50   0.13   1
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    30   0.15   12
(BH146274) ENTQI34TF Entamoeba histolytica Sheared DNA Entam...    36   0.16   3
(AL935303) Zebrafish DNA sequence from clone CH211-197A2 in ...    48   0.51   1
(AC134325) Mus musculus BAC clone RP24-235L14 from chromosom...    48   0.51   1
(EJ850260) 1093017878075 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.51   1
(AC023784) Homo sapiens chromosome 11 clone CTD-2026G22, WOR...    38   0.58   4
(AC110742) Homo sapiens chromosome 11, clone CTD-2026G22, co...    38   0.72   4
(AC224558) Bos taurus clone CH240-481M11, WORKING DRAFT SEQU...    36   1.2    5
(CP000013) Borrelia garinii PBi, complete genome.                  34   1.2    14
(CX923361) JGI_CAAN9333.rev NIH_XGC_tropTe4 Xenopus (Siluran...    42   1.3    2
(EJ611933) 1092962051623 Global-Ocean-Sampling_GS-29-01-01-1...    36   1.3    2
(AL928628) Zebrafish DNA sequence from clone DKEY-5G18 in li...    40   1.4    7
(AY220549) Engaeus laevis isolate A8DF5392 12S ribosomal RNA...    36   1.4    2
(EJ609784) 1092962035111 Global-Ocean-Sampling_GS-29-01-01-1...    36   1.5    2
(AC166002) Nomascus leucogenys leucogenys clone CH271-400K18...    36   2.0    5
(AL928562) Mouse DNA sequence from clone RP23-288O19 on chro...    46   2.0    1
(AC136896) Homo sapiens chromosome 15, clone RP11-860O1, com...    46   2.0    1
(AC087485) Homo sapiens chromosome 15, clone RP11-570N16, co...    46   2.0    1
(AC159575) Atelerix albiventris clone LB4-229H1, WORKING DRA...    46   2.0    1
(AC146666) Homo sapiens chromosome 15 clone RP11-857N1 map 1...    46   2.0    1
(AC107785) Mus musculus clone RP23-8N21, WORKING DRAFT SEQUE...    46   2.0    1
(AC172737) Loxodonta africana clone VMRC15-234M3, WORKING DR...    46   2.0    1
(AC019229) Homo sapiens chromosome 15 clone RP11-570N16, WOR...    46   2.0    1
(FH376516) CHO_OF4607xm03f1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   2.0    1
(DU928672) 354775 Tomato EcoRI BAC Library Solanum lycopersi...    46   2.0    1
(AL291174) Tetraodon nigroviridis genome survey sequence PUC...    46   2.0    1
(AL290871) Tetraodon nigroviridis genome survey sequence PUC...    46   2.0    1
(DU042819) 156179 Tomato HindIII BAC Library Solanum lycoper...    46   2.0    1
(DU026020) 6595 Tomato HindIII BAC Library Solanum lycopersi...    46   2.0    1
(DU024309) 4344 Tomato HindIII BAC Library Solanum lycopersi...    46   2.0    1
(CZ547676) SRAA-aad75e03.g1 Strongyloides ratti whole genome...    46   2.0    1
(CZ543832) SRAA-aad52c06.g1 Strongyloides ratti whole genome...    46   2.0    1
(BZ218345) CH230-360P15.TVB CHORI-230 Segment 2 Rattus norve...    46   2.0    1
(EG114358) MSAM158388_1579_1083 LCM-dissected maize inbred l...    46   2.0    1
(CD525716) kw25a04.y1 Strongyloides ratti PA female naive pA...    46   2.0    1
(CB857430) NISC_na07a08.y1 COGENE 8.5 EAT Homo sapiens cDNA ...    46   2.0    1
(FC820582) Sr_pAMT7_018b23_T7 S. ratti mixed stage pAMP Stro...    46   2.0    1
(FC814516) Sr_pASP6_018b23_SP6 S. ratti mixed stage pAMP Str...    46   2.0    1
(EF568108) Glossina pallidipes salivary gland hypertrophy vi...    34   2.0    8
(AC219309) Bos taurus clone CH240-336H24, WORKING DRAFT SEQU...    36   2.1    4
(CU138577) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    38   2.1    7
(BX323987) Zebrafish DNA sequence from clone DKEY-125E8.           40   2.1    6
(AC098862) Homo sapiens BAC clone RP11-339D20 from 4, comple...    42   2.2    7
(AC021172) Homo sapiens chromosome 1 clone RP11-679P24, WORK...    40   2.2    4
(AE017308) Mycoplasma mobile 163K complete genome.                 32   2.3    16
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699...    34   2.9    16
(AC115581) Dictyostelium discoideum chromosome 2 map complem...    38   3.0    6
(DJ025883) Genome-wide DNA marker of Saccharomyces cerevisiae.     40   3.4    8
(CT583722) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   3.6    9
(BX248091) Zebrafish DNA sequence from clone DKEY-257I9.           40   3.6    5
(AC221588) Bos taurus clone CH240-391M17, WORKING DRAFT SEQU...    40   3.8    3
(AL954649) Zebrafish DNA sequence from clone CH211-285P11.         34   4.0    5
(AC189443) Brassica rapa subsp. pekinensis clone KBrB070J11,...    34   4.0    6
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    36   4.4    16
(CR932563) Paramecium tetraurelia, Small GTPase rab, putativ...    38   4.6    2
(EJ786999) 1093017355253 Global-Ocean-Sampling_GS-30-02-01-1...    34   4.8    2
(CU467830) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   5.0    5
(EK465183) 1095469418843 Global-Ocean-Sampling_GS-32-01-01-1...    32   5.1    2
(ED681679) GM_WBb0014P07.r GM_WBb Glycine max genomic clone ...    32   5.1    2
(EI022106) bb74e05.r Dekkera bruxellensis Random Genomic Lib...    32   5.1    2
(EI016722) bb03a10.f Dekkera bruxellensis Random Genomic Lib...    32   5.2    2
(FH935702) CHO_NF2048xd08f1.ab1 CHO_NF2 Nicotiana tabacum ge...    42   5.2    2
(EV770335) AGENCOURT_113685791 NIH_MGC_431 Rattus norvegicus...    38   5.3    2
(DC219069) Plasmodium berghei strain ANKA cDNA clone:MZ00047...    34   5.3    3
(EV780839) AGENCOURT_114815452 NIH_MGC_433 Rattus norvegicus...    38   5.5    2
(EV780423) AGENCOURT_114822909 NIH_MGC_433 Rattus norvegicus...    38   5.8    2
(AC214604) Nomascus leucogenys chromosome UNK clone CH271-44...    36   5.8    7
(EV778929) AGENCOURT_114818577 NIH_MGC_433 Rattus norvegicus...    38   5.9    2
(CP000395) Borrelia afzelii PKo, complete genome.                  34   6.0    13
(AF397166) Streptococcus mutans sdcB gene locus, complete se...    42   6.1    2
(AC191277) Zea mays chromosome 3 clone CH201-333D9; ZMMBBc03...    42   6.3    4
(FM083274) Rattus norvegicus EST, 5'-end sequence, clone etn...    38   6.4    2
(AC137507) Oryza sativa chromosome 3 BAC OSJNBb0033J23 genom...    40   6.6    3
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    36   7.0    12
(AM443078) Vitis vinifera contig VV78X218089.2, whole genome...    32   7.1    3
(CU611039) Zebrafish DNA sequence from clone CH1073-210B3 in...    44   7.9    1
(CT027629) Zebrafish DNA sequence from clone DKEY-237G3 in l...    44   7.9    1
(BC067712) Danio rerio hypothetical protein LOC407674, mRNA ...    44   7.9    1
(AY350715) Arabidopsis arenosa clone BAC Aer1B10, complete s...    44   7.9    1
(DQ900687) Hordeum vulgare clone BAC 455J22, complete sequence.    44   7.9    1
(BX000457) Oryza sativa chromosome 12, . BAC OJ1388_B05 of l...    44   7.9    1
(AY350712) Arabidopsis arenosa clone BAC Aer6D24, complete s...    44   7.9    1
(AP008218) Oryza sativa (japonica cultivar-group) genomic DN...    44   7.9    1
(AM439445) Vitis vinifera contig VV78X232443.6, whole genome...    44   7.9    1
(AL163912) Arabidopsis thaliana DNA chromosome 5, BAC clone ...    44   7.9    1
(Z78198) Caenorhabditis elegans Cosmid F55C5.                      44   7.9    1
(DQ184821) Irus crenatus voucher FMNH 306208 cytochrome oxid...    44   7.9    1
(AC149845) Papio anubis clone RP41-13K15, WORKING DRAFT SEQU...    44   7.9    1
(AC118579) Didelphis virginiana clone LB3-54P21, WORKING DRA...    44   7.9    1
(CU633363) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.9    1
(CU628003) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   7.9    1
(CT956009) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.9    1
(CR678384) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   7.9    1
(CR394539) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   7.9    1
(AC222115) Bos taurus clone CH240-371J18, WORKING DRAFT SEQU...    44   7.9    1
(AC211591) Zea mays chromosome 1 clone CH201-110P19; ZMMBBc0...    44   7.9    1
(AC210090) Zea mays chromosome 3 clone ZMMBBb-471A6; ZMMBBb0...    44   7.9    1
(AC209118) Chlorocebus aethiops clone CH252-432P13, WORKING ...    44   7.9    1
(AC204561) Zea mays chromosome 10 clone CH201-399A8; ZMMBBc0...    44   7.9    1
(AC202970) Zea mays chromosome 3 clone CH201-280G17; ZMMBBc0...    44   7.9    1
(AC193460) Zea mays chromosome 10 clone CH201-383L19; ZMMBBc...    44   7.9    1
(AC189442) Brassica rapa subsp. pekinensis clone KBrB070J05,...    44   7.9    1
(AC185625) Zea mays chromosome 4 clone CH201-480K16; ZMMBBc0...    44   7.9    1
(AC185555) Microcebus murinus clone CH257-571M6, WORKING DRA...    44   7.9    1
(AC172272) Bos taurus clone CH240-261A22, WORKING DRAFT SEQU...    44   7.9    1
(AZ669281) ENTKU12TF Entamoeba histolytica Sheared DNA Entam...    44   7.9    1
(FI094205) MUGQ_CH252P467M20T7_CH0136_068 CHORI-252 Vervet M...    44   7.9    1
(FH321785) CHO_OF4540xn13r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   7.9    1
(ET663172) MUGQ_CH252P451C05T7_CH0103_029 CHORI-252 Vervet M...    44   7.9    1
(EJ529254) 1092955210575 Global-Ocean-Sampling_GS-29-01-01-1...    44   7.9    1
(EJ100918) 1095469436047 Global-Ocean-Sampling_GS-26-01-01-1...    44   7.9    1
(ED278636) AUAC-aaz83b07.b1 Ascaris suum whole genome shotgu...    44   7.9    1
(ED127562) AUAC-aam74f07.b1 Ascaris suum whole genome shotgu...    44   7.9    1
(DX933969) MUGQ_CH252P088M04T7_CP102_052 CHORI-252 Vervet Mo...    44   7.9    1
(DH086216) Oryzias latipes Fosmid clone:GOLWFno163_d07, reve...    44   7.9    1
(CZ379795) ZMMBF0152F23f ZMMBF Zea mays genomic clone ZMMBF0...    44   7.9    1
(BH834165) BACPP6-O19.z Pristionchus pacificus BAC ends Pris...    44   7.9    1
(CN815883) HRO4511_E09_J17ZS5 Lib AA071E1X Avena sativa cv. ...    44   7.9    1
(CJ385422) Molgula tectiformis cDNA, gastrula/neurula clone:...    44   7.9    1
(CJ374840) Molgula tectiformis cDNA, gastrula/neurula clone:...    44   7.9    1
(BF583197) 602098138F1 NCI_CGAP_Co24 Mus musculus cDNA clone...    44   7.9    1
(FL903814) CCGO1641.b1 CCGO Panicum virgatum root (H) Panicu...    44   7.9    1
(FL728844) CCGB10167.b1 CCGB Panicum virgatum apex + stem (L...    44   7.9    1
(FK246039) XABT202876.b1 Gateway compatible cien cDNA librar...    44   7.9    1
(FF816809) XABT35778.fwd Gateway compatible cien cDNA librar...    44   7.9    1
(FF816808) XABT35778.rev Gateway compatible cien cDNA librar...    44   7.9    1
(FF811285) XABT104883.rev Gateway compatible cien cDNA libra...    44   7.9    1
(FF725420) XABT40991.rev Gateway compatible cien cDNA librar...    44   7.9    1
(FD953248) RS3GX72JQB RS3(RT) Raphanus sativus cDNA 3', mRNA...    44   7.9    1
(FD777499) NADH-aaa04g01.g1 Rhodnius_prolixus_EST_NADH_T.cru...    44   7.9    1
(FD777121) NADH-aaa04g01.b1 Rhodnius_prolixus_EST_NADH_T.cru...    44   7.9    1
(EX721241) RaSFL 635 Rheum australe low-temperature inducibl...    44   7.9    1
(CP000419) Streptococcus thermophilus LMD-9, complete genome.      44   7.9    1
(CP000024) Streptococcus thermophilus CNRZ1066, complete gen...    44   7.9    1
(CP000023) Streptococcus thermophilus LMG 18311, complete ge...    44   7.9    1
(AM462230) Vitis vinifera contig VV78X041886.10, whole genom...    32   8.6    3
(AM434072) Vitis vinifera contig VV78X161009.3, whole genome...    30   8.6    4
(AC174165) Strongylocentrotus purpuratus clone R3-3073E1, WO...    40   8.7    4
(AC189366) Brassica rapa subsp. pekinensis clone KBrB046G20,...    34   8.7    4
(CR456630) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   9.1    4
(AC184407) Strongylocentrotus purpuratus clone R3-3105G7, WO...    40   9.2    3
(AC092583) Homo sapiens BAC clone RP11-19B22 from 2, complet...    34   9.2    5
(AZ943326) 2M0203P20R Mouse 10kb plasmid UUGC2M library Mus ...    38   9.6    2

>(BJ379401) Dictyostelium discoideum cDNA clone:ddc34b23, 3' end,
           single read.
          Length = 756

 Score = 1427 bits (720), Expect = 0.0
 Identities = 722/723 (99%)
 Strand = Plus / Minus


Query: 1   tcttacattttaatgtatactttaaccatttggaacgtgaagaggactttaaaatcataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 tcttacattttaatgtatactttaaccatttggaacgtgaagaggactttaaaatcataa 697


Query: 61  gaggggtcgatagaattagagtttcaagtgagaataattatcaacatccagagggtgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 gaggggtcgatagaattagagtttcaagtgagaataattatcaacatccagagggtgaga 637


Query: 121 atgataatcaacaagtgaaagagattattaacttttccaatgaaaatcagttcctaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 636 atgataatcaacaagtgaaagagattattaacttttccaatgaaaatcagttcntaagat 577


Query: 181 tgaatgcataccaaaacagaacttttaattgcagtaaattcgttcttggtcaagtacctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tgaatgcataccaaaacagaacttttaattgcagtaaattcgttcttggtcaagtacctg 517


Query: 241 taattttggagaagatcattaaattggaaactgaaaagaatccatcgactccaattaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 taattttggagaagatcattaaattggaaactgaaaagaatccatcgactccaattaaca 457


Query: 301 ttggtatcattttaaataacctttataaatcttcaaatattaaaaatccattacattttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ttggtatcattttaaataacctttataaatcttcaaatattaaaaatccattacattttc 397


Query: 361 atcaacttcaagattttgatcatatggttttaaataaattaaagagtcatttcggtgatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 atcaacttcaagattttgatcatatggttttaaataaattaaagagtcatttcggtgatg 337


Query: 421 ataatgtaaaggtttgctcattcttaattcacttcccaaagccattcgtacctcaaatcg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ataatgtaaaggtttgctcattcttaattcacttcccaaagccattcgtacctcaaatcg 277


Query: 481 atgaggatgatgaagatgctcaacctccaccacctcaaaatcctgaagatttaaaaccaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 atgaggatgatgaagatgctcaacctccaccacctcaaaatcctgaagatttaaaaccaa 217


Query: 541 gaattgaaatgataaatgctaaagtagttaatggtttcaatagagttatgaaagatacta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattgaaatgataaatgctaaagtagttaatggtttcaatagagttatgaaagatacta 157


Query: 601 aaactttattatttttaagttcttcaaaatatttagatttaaaaagtattcattcaaaac 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aaactttattatttttaagttcttcaaaatatttagatttaaaaagtattcattcaaaac 97


Query: 661 caattatgacaaatgattcacaagaatttgaagaagttggttgtttttctgcaatcatgg 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  caattatgacaaatgattcacaagaatttgaagaagttggttgtttttctgcaatcatgg 37


Query: 721 tat 723
           |||
Sbjct: 36  tat 34

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,061,027,716
Number of extensions: 69372677
Number of successful extensions: 6188560
Number of sequences better than 10.0: 154
Length of query: 798
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 774
Effective length of database: 96,409,374,237
Effective search space: 74620855659438
Effective search space used: 74620855659438
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U15360-1 (Contig-U15360-1Q) /CSM_Contig/Contig-U15360-1Q.Seq.d
         (798 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116956_77(AC116956|pid:none) Dictyostelium discoideum chromoso...    61   4e-08
U92974_2(U92974|pid:none) Lactococcus lactis unknown gene, parti...    42   0.030
AL163975_19(AL163975|pid:none) Arabidopsis thaliana DNA chromoso...    40   0.11
CP000496_965(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...    39   0.25
AM910990_109(AM910990|pid:none) Plasmodium knowlesi strain H chr...    37   0.97
AL844506_245(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    36   1.3
AE014188_497(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    36   1.3
AC116960_66(AC116960|pid:none) Dictyostelium discoideum chromoso...    36   1.3
FN357361_6(FN357361|pid:none) Schistosoma mansoni genome sequenc...    35   2.8
(P61243) RecName: Full=Protein ycf2;  &AP005672_45(AP005672|pid:...    34   4.8
B45734(B45734)histidinol-phosphate transaminase (EC 2.6.1.9) his...    34   4.8
AB023228_1(AB023228|pid:none) Homo sapiens mRNA for KIAA1011 pro...    34   6.3
AF083031_79(AF083031|pid:none) Guillardia theta nucleomorph chro...    34   6.3
AF435011_1(AF435011|pid:none) Homo sapiens NUANCE (NUA) mRNA, co...    34   6.3
(Q8WXH1) RecName: Full=Nesprin-2; AltName: Full=Nuclear envelope...    34   6.3
AF495911_1(AF495911|pid:none) Homo sapiens nesprin-2 mRNA, compl...    34   6.3

>AC116956_77(AC116956|pid:none) Dictyostelium discoideum chromosome
           2 map 1418423-1684967 strain AX4, complete sequence.
          Length = 551

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 63/244 (25%), Positives = 113/244 (46%), Gaps = 4/244 (1%)
 Frame = +3

Query: 3   LHFNVYFNHLEREEDFKIIRGVDRIRVSSENNYQHPEGENDNQQVKEIINFSNENQFLRL 182
           L FN+ F + ER+E+  +I      R+     Y++   E           +S +++FL L
Sbjct: 344 LQFNILFINEERKENEPLITFK---RMDDFFEYRNEPTE-----------YSEKDKFLTL 389

Query: 183 NAYQNRTFNCSKFVLGQVPVILEKIIKLETEKNPSTPINIGIILNNLYKSSNIKNPLHFH 362
           N YQN+  +     +      L+K+I +         +N GI L++LYKS+  +N
Sbjct: 390 N-YQNKNESEKDCSIKANKKHLQKMISIFENVINERSVNCGIFLSHLYKSNVNEN----- 443

Query: 363 QLQDFDHMVLNKLKSHFGDDNVKVCSFLIHFPKPFVXXXXXXXXXXXXXXXXXXXXLKPR 542
            L+  D ++ N++K++FG + V+V +FLI+                           +
Sbjct: 444 HLKGLDLLIWNEIKNYFGSERVQVFTFLIN----------------------NRGDNQLI 481

Query: 543 IEMINAKVVN--GFNRVMKDTKTLLFLSSSKYLDLKSIHSKP--IMTNDSQEFEEVGCFS 710
           IE ++ K +N    ++  K T   +    SKY +L+ + S+P     NDS + E++G FS
Sbjct: 482 IEKVSNKTMNEPDKSKNNKVTPHTILFCGSKYGNLRCLLSRPQEYTGNDSYQQEDIGVFS 541

Query: 711 AIMV 722
           AI++
Sbjct: 542 AIVI 545

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,034,721,905
Number of extensions: 18103303
Number of successful extensions: 53701
Number of sequences better than 10.0: 16
Number of HSP's gapped: 53555
Number of HSP's successfully gapped: 17
Length of query: 266
Length of database: 1,051,180,864
Length adjustment: 126
Effective length of query: 140
Effective length of database: 643,374,430
Effective search space: 90072420200
Effective search space used: 90072420200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

 psg: 0.75  gvh: 0.17  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  8.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U15360-1 is nuc