Contig-U15358-1
Contig ID Contig-U15358-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15358-1 (Contig-U15358-1Q) /CSM_Contig/Contig-U15358-1Q.Seq.d
TTTAAATTAATAANCTTTANTAAATNTAAATAAATAAAAATAAAATNTAA
ATNTAAATNTAATATAAATNTTAAAAAAATTAAATAAATNTAAATNTTAA
AAAAANTTAAATAAATAAAATNTAAAAAATTAAAANTTAANGAGGGAAAA
AAAAAA

Gap no gap
Contig length 156
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U15358
List of clone(s)

est1=CHO818F,1,156
Translated Amino Acid sequence
fklixfxkxk*IKIKXKXKXNINXKKIK*x*xlkkxk*ikxkklkxxegkkk


Translated Amino Acid sequence (All Frames)
Frame A:
fklixfxkxk*IKIKXKXKXNINXKKIK*x*xlkkxk*ikxkklkxxegkkk


Frame B:
ln**xlxnxnk*k*nxnxnxi*xlkklnkxkx*kxlnk*nxkn*xlxrekk


Frame C:
*inxlx*x*inknkx*x*x*ykx*kn*inxnxkkx*inkx*kikx*xgkkk


own update ----------
Homology vs CSM-cDNA -
dna update 2009. 1.22
Homology vs DNA
Query= Contig-U15358-1 (Contig-U15358-1Q) /CSM_Contig/Contig-U15358-1Q.Seq.d
(156 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 0
Number of sequences better than 10.0: 0
Length of query: 156
Length of database: 98,766,808,389
Length adjustment: 22
Effective length of query: 134
Effective length of database: 96,605,827,083
Effective search space: 12945180829122
Effective search space used: 12945180829122
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 7.16
Homology vs Protein
Query= Contig-U15358-1 (Contig-U15358-1Q) /CSM_Contig/Contig-U15358-1Q.Seq.d
(156 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

BT050756_1(BT050756|pid:none) Medicago truncatula clone MTYF5_F6... 44 0.001
BT051012_1(BT051012|pid:none) Medicago truncatula clone MTYFD_FE... 42 0.005
AM269894_60(AM269894|pid:none) Eimeria tenella chromosome 1, ord... 40 0.033
CU633895_291(CU633895|pid:none) Podospora anserina genomic DNA c... 39 0.057
T31613(T31613)hypothetical protein Y50E8A.i - Caenorhabditis ele... 37 0.22
AM433463_1(AM433463|pid:none) Vitis vinifera contig VV78X022531.... 35 1.1
AX647645_1(AX647645|pid:none) Sequence 1837 from Patent EP1270724. 34 1.4
BT050794_1(BT050794|pid:none) Medicago truncatula clone MTYF5_F6... 34 1.8
AM269894_54(AM269894|pid:none) Eimeria tenella chromosome 1, ord... 34 1.8
AL031745_101(AL031745|pid:none) Plasmodium falciparum DNA from M... 33 4.1
AX647165_1(AX647165|pid:none) Sequence 1357 from Patent EP1270724. 33 4.1
AY812022_1(AY812022|pid:none) Schistosoma japonicum clone SJCHGC... 33 4.1

>BT050756_1(BT050756|pid:none) Medicago truncatula clone
MTYF5_F6_F7_F81G-K-23 unknown mRNA.
Length = 79

Score = 44.3 bits (103), Expect = 0.001
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = -1

Query: 156 FFFSLXXF*FFXFYLFXFF*XLXLFNFFXIYIXFXFXFYFYLFXFXKXY*FK 1
FFF F FF F+ F FF F FF + F F F+F+ F F + F+
Sbjct: 6 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFQ 57

Score = 43.9 bits (102), Expect = 0.002
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = -1

Query: 156 FFFSLXXF*FFXFYLFXFF*XLXLFNFFXIYIXFXFXFYFYLFXF 22
FFF F FF F+ F FF F FF + F F F+F+ F F
Sbjct: 1 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF 45

Score = 43.9 bits (102), Expect = 0.002
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = -1

Query: 156 FFFSLXXF*FFXFYLFXFF*XLXLFNFFXIYIXFXFXFYFYLFXF 22
FFF F FF F+ F FF F FF + F F F+F+ F F
Sbjct: 2 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF 46

Score = 43.9 bits (102), Expect = 0.002
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = -1

Query: 156 FFFSLXXF*FFXFYLFXFF*XLXLFNFFXIYIXFXFXFYFYLFXF 22
FFF F FF F+ F FF F FF + F F F+F+ F F
Sbjct: 3 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF 47

Score = 43.9 bits (102), Expect = 0.002
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = -1

Query: 156 FFFSLXXF*FFXFYLFXFF*XLXLFNFFXIYIXFXFXFYFYLFXF 22
FFF F FF F+ F FF F FF + F F F+F+ F F
Sbjct: 4 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF 48

Score = 43.9 bits (102), Expect = 0.002
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = -1

Query: 156 FFFSLXXF*FFXFYLFXFF*XLXLFNFFXIYIXFXFXFYFYLFXF 22
FFF F FF F+ F FF F FF + F F F+F+ F F
Sbjct: 5 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF 49

Score = 42.4 bits (98), Expect = 0.005
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = -1

Query: 156 FFFSLXXF*FFXFYLFXFF*XLXLFNFFXIYIXFXFXFYFYLFXFXK 16
FFF F FF F+ F FF F FF + F F F+F+ F K
Sbjct: 14 FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFQSIK 60

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 65,184,954
Number of extensions: 510335
Number of successful extensions: 781
Number of sequences better than 10.0: 12
Number of HSP's gapped: 687
Number of HSP's successfully gapped: 29
Length of query: 52
Length of database: 1,051,180,864
Length adjustment: 25
Effective length of query: 27
Effective length of database: 970,266,889
Effective search space: 26197206003
Effective search space used: 26197206003
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 25 (14.2 bits)

PSORT -
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0