Contig-U15347-1
Contig ID Contig-U15347-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15347-1 (Contig-U15347-1Q) /CSM_Contig/Contig-U15347-1Q.Seq.d
CACTGTTGGCCTACTGGTAAATTTGAATTTGAACGTTTTAAAGNCCAACG
GTCTCTTGGATGCCGAAGCAGAGAAATTAAAAAAAGATAAAGAGAAAGAA
TTTGAATCTAAAAGACCAATTGATGAAACCACTGGTATGAAAATTCCAAT
CCACAAAGTTACACAAACCGAAAAAATCAGATATGACCCAATTTTGCGTG
ATGCATTCCCATCACCATTGGTTGCAGATCAAAAAGTTGGAGGAATAGAT
GAAGAAATTGATCAACTTGATGAAGAAGATCATGATGAAGAATTTTCATT
AGAGAATAAAGAAAGTAAAATCAAAATGTTAATTGAAAAGATGGAAGATC
AATCAAACAAAGACCCACAATTTAAACTCATGGTTATGAATTTCCTCGAT
GATGGTATTCCATTAAAAGATAAATTAATATTTAGAGATGATTTTGAAAT
TTCAGCAGAAACTTTAAAGTCATTTTCAATGGTGAATGAAGCCGATGACG
ACCAACTCGACTCTCAAGTTGAATTATCAGAGAAAGAGAAAAAAGTCATT
GGAATAGCTCAACAAAAGATTTTAGATTTACAAATTAAAGAGATAGCAAA
AGATTATAAATTCAATTCATCATTGGAGCAGAAGAGATTGGATATTCTCT
TTAGAAATAATACTATTTTAAGATATAAAGCTAAAGAGGCAGGTGCAATT
CAAAAGGATGGTTCAATTGATATGAAAAAACTTTTACAACAACCACTTGG
TATTGAAGATTTAACTCGNTATTCATTGGATTTCTCGAGTGAAAACTCTG
GTAATTACATCTATCAAGATGGTCAATTATTGAAACAATTCGATGATGGT
TTCACCATGCCATACGAGAAATTGTATGAAGAGGATGTAAAGAGTCAAAA
AAAACTTGATAAATTGAAATCCGCTGCCAACAAGGTGATTTGCTTTACCA
ATGGAAAAGGATCAGCAAGAGAGGGTGAAGAGATCTTGGAAGAGGTTTCT
CTATCAGAAATGGATGCCTTACATACTTTCATTGATATGTAAAAGTCATT
GGAATAGCTCAACAAAAGATTTTAGATTTACAAATTAAAGAGATAGCAAA
AGATTATAAATTCAATTCATCATTGGAGCAGAAGAGATTGGATATTCTCT
TTAGAAATAATACTATTTTAAGATATAAAGCTAAAGAGGCAGGTGCAATT
CAAAAGGATGGTTCAATTGATATGAAAAAACTTTTACAACAACCACTTGG
TATTGAAGATTTAACTCGNTATTCATTGGATTTCTCGAGTGAAAACTCTG
GTAATTACATCTATCAAGATGGTCAATTATTGAAACAATTCGATGATGGT
TTCACCATGCCATACGAGAAATTGTATGAAGAGGATGTAAAGAGTCAAAA
AAAACTTGATAAATTGAAATCCGCTGCCAACAAGGTGATTTGCTTTACCA
ATGGAAAAGGATCAGCAAGAGAGGTTGAAGAGATCTTGGAAGAGTTTTCT
CTATCAGAAATGGATGCCTTACATACTTTCATTGATATGTTTGGTAGTGA
TTTAGTTGAATATAGTCTTAACTTACCTTCTGAAGGTAAATATATGGACG
CAGTCTATGAATATCTTGAAAATGAAAAGGAGAGGAGAACAATGATGTTA
GGTGATTCATTCCGTGATCACGTCACTCTTTCACCAAATGAAGCTGAAGA
GTTCCCAACCCATGAAATTATGCTCCCAGAGGATAGAGTATTGGTCACCA
AAGAGGATTCACCAATGGTTAAAGCATTCAAAGATAGAGTCATTCAAGAG
GGTCTTTTAAATGATTTCCAAACCAAGATCGATCTCGTCAATGATCAACC
ACAATATGAATCCCACCTTTTCATGGAAGAGTACAAAGCTAAACTCTATG
AAAATGAGAAACAACTCCAAAAAGATTTACTCGAGACCAGAGATCCAATG
ATGATTCGTAATTTCATTAAATACAAATACGATCAACAAAAAGAGTTACT
CGATCAAAAGAAGGAACAAGAATACAACGATCACACTTCAACTATGAATG
AAATCGTTCAAGAGGTTTCTCAAGGTTCCCTATCAAATATCGATCCACCA
ATCTATCATCCTGTCACTGGTAAATTATTTACACCAAAAAAAAAGAATCC
AAAATGTCTCCTTTGTCAAAATCCAAATTGGCAAGTTGATCCACTCAATA
CTCCTTTCCTTTCCATCTATTTAAATAAAGCCGGTGATATGCTTCCAAGA
CATTTCAGTGGTAATTGTTTAAAACATCAAAAGAAGATCGTTAAAACCAT
TAGACAAGCTAAATCTTTAGGTATCTTCTCCTACAAGAATGGTACTTTCA
CAATTTATAATCCAAATGTATATAGTCTCACCAATCAAGAGTTGGAAGAA
TACAACAAATGGTTGAATGGTACTTACACTAAAGAAGAGTTACAACAAGT
TTACGATGAGTATGAAGCTAGCAAAGAATTAAGATTTAAACCTACTTGGA
CTGAGGCTGTTNAACTTCCAAA

Gap no gap
Contig length 2522
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 3509501
End point 3507860
Strand (PLUS/MINUS) MINUS
Number of clones 8
Number of EST 10
Link to clone list U15347
List of clone(s)

est1=SFE496F,1,555
est2=FC-BC03F,67,645
est3=SFE496H,541,1540
est4=VFH362F,1329,1790
est5=SFE496Z,1389,2127
est6=CHI551Z,1407,1993
est7=VSA474Z,1863,2487
est8=VHM807Z,1920,2467
est9=CHN823Z,1943,2522
est10=VHO553Z,2070,2467
Translated Amino Acid sequence
hcwptgkfeferfkxqrslgcrsreikkr*reri*i*ktn**nhwyensnpqsytnrknq
i*pnfa*cipitigcrskswrnr*rn*st**rrs**rifire*rk*nqnvn*kdgrsikq
rpti*thgyefpr*wysikr*ini*r*f*nfsrnfkvifnge*sr*rptrlss*iirere
kshwnsstkdfrftn*rdskrl*iqfiigaeeigysl*k*yyfki*s*rgrcnskgwfn*
yektfttttwy*rfnsxfigfle*klw*lhlsrwsiietir*wfhhaireiv*rgckesk
kt**ieircqqgdllyqwkriskrg*rdlgrgfsirngcltyfh*YVKVIGIAQQKILDL
QIKEIAKDYKFNSSLEQKRLDILFRNNTILRYKAKEAGAIQKDGSIDMKKLLQQPLGIED
LTRYSLDFSSENSGNYIYQDGQLLKQFDDGFTMPYEKLYEEDVKSQKKLDKLKSAANKVI
CFTNGKGSAREVEEILEEFSLSEMDALHTFIDMFGSDLVEYSLNLPSEGKYMDAVYEYLE
NEKERRTMMLGDSFRDHVTLSPNEAEEFPTHEIMLPEDRVLVTKEDSPMVKAFKDRVIQE
GLLNDFQTKIDLVNDQPQYESHLFMEEYKAKLYENEKQLQKDLLETRDPMMIRNFIKYKY
DQQKELLDQKKEQEYNDHTSTMNEIVQEVSQGSLSNIDPPIYHPVTGKLFTPKKKNPKCL
LCQNPNWQVDPLNTPFLSIYLNKAGDMLPRHFSGNCLKHQKKIVKTIRQAKSLGIFSYKN
GTFTIYNPNVYSLTNQELEEYNKWLNGTYTKEELQQVYDEYEASKELRFKPTWTEAVXLP


Translated Amino Acid sequence (All Frames)
Frame A:
hcwptgkfeferfkxqrslgcrsreikkr*reri*i*ktn**nhwyensnpqsytnrknq
i*pnfa*cipitigcrskswrnr*rn*st**rrs**rifire*rk*nqnvn*kdgrsikq
rpti*thgyefpr*wysikr*ini*r*f*nfsrnfkvifnge*sr*rptrlss*iirere
kshwnsstkdfrftn*rdskrl*iqfiigaeeigysl*k*yyfki*s*rgrcnskgwfn*
yektfttttwy*rfnsxfigfle*klw*lhlsrwsiietir*wfhhaireiv*rgckesk
kt**ieircqqgdllyqwkriskrg*rdlgrgfsirngcltyfh*YVKVIGIAQQKILDL
QIKEIAKDYKFNSSLEQKRLDILFRNNTILRYKAKEAGAIQKDGSIDMKKLLQQPLGIED
LTRYSLDFSSENSGNYIYQDGQLLKQFDDGFTMPYEKLYEEDVKSQKKLDKLKSAANKVI
CFTNGKGSAREVEEILEEFSLSEMDALHTFIDMFGSDLVEYSLNLPSEGKYMDAVYEYLE
NEKERRTMMLGDSFRDHVTLSPNEAEEFPTHEIMLPEDRVLVTKEDSPMVKAFKDRVIQE
GLLNDFQTKIDLVNDQPQYESHLFMEEYKAKLYENEKQLQKDLLETRDPMMIRNFIKYKY
DQQKELLDQKKEQEYNDHTSTMNEIVQEVSQGSLSNIDPPIYHPVTGKLFTPKKKNPKCL
LCQNPNWQVDPLNTPFLSIYLNKAGDMLPRHFSGNCLKHQKKIVKTIRQAKSLGIFSYKN
GTFTIYNPNVYSLTNQELEEYNKWLNGTYTKEELQQVYDEYEASKELRFKPTWTEAVXLP


Frame B:
tvgllvnlnlnvlkxnglldaeaeklkkdkekefeskrpidettgmkipihkvtqtekir
ydpilrdafpsplvadqkvggideeidqldeedhdeefslenkeskikmliekmedqsnk
dpqfklmvmnflddgiplkdklifrddfeisaetlksfsmvneadddqldsqvelsekek
kvigiaqqkildlqikeiakdykfnssleqkrldilfrnntilrykakeagaiqkdgsid
mkkllqqplgiedltrysldfssensgnyiyqdgqllkqfddgftmpyeklyeedvksqk
kldklksaankvicftngkgsaregeeileevslsemdalhtfidm*ksle*lnkrf*iy
klkr*qkiinsihhwsrrdwifsleiilf*diklkrqvqfkrmvqli*knfynnhlvlki
*lxihwisrvktlvitsikmvny*nnsmmvspchtrncmkrm*rvkknlin*nplptr*f
alpmekdqqerlkrswksflyqkwmpyilsliclvvi*lnivltyllkvniwtqsmnilk
mkrrgeq*c*vihsvitslfhqmklkssqpmklcsqrieywspkrihqwlkhskiesfkr
vf*miskprsissminhnmnptfswkstklnsmkmrnnskkiysrpeiq**fvislntnt
inkksysikrrnknttitlql*mksfkrflkvpyqisihqsiilslvnylhqkkriqnvs
fvkiqigklihsillsfpsi*ikpvicfqdisvviv*nikrrslkpldklnl*vssptrm
vlsqfiiqmyivspikswknttng*mvltlkksynkftmsmklakn*dlnllglrlxnfq


Frame C:
llayw*i*i*tf*xptvswmpkqrn*kkikrknlnlkdqlmkplv*kfqstklhkpkksd
mtqfcvmhshhhwlqikklee*mkklinlmkkimmknfh*rikkvkskc*lkrwkinqtk
thnlnswl*issmmvfh*kin*ylemilkfqqkl*shfqw*mkpmttnstlklnyqrkrk
ksle*lnkrf*iyklkr*qkiinsihhwsrrdwifsleiilf*diklkrqvqfkrmvqli
*knfynnhlvlki*lxihwisrvktlvitsikmvny*nnsmmvspchtrncmkrm*rvkk
nlin*nplptr*falpmekdqqervkrswkrflyqkwmpyilslickshwnsstkdfrft
n*rdskrl*iqfiigaeeigysl*k*yyfki*s*rgrcnskgwfn*yektfttttwy*rf
nsxfigfle*klw*lhlsrwsiietir*wfhhaireiv*rgckeskkt**ieircqqgdl
lyqwkriskrg*rdlgrvfsirngcltyfh*yvw**fs*i*s*ltf*r*iygrsl*is*k
*kgeenndvr*fip*srhsftk*s*rvpnp*nyaprg*sighqrgftng*siqr*shsrg
sfk*fpnqdrsrq*stti*ippfhgrvqs*tl*k*ettpkrftrdqrsndds*fh*iqir
stkrvtrskegtriqrshfnye*nrsrgfsrfpikyrstnlsschw*iiytkkkeskmsp
lsksklas*stqysfpfhlfk*sr*yasktfqw*lfktskedr*nh*ts*ifrylllqew
yfhnl*skci*shqsrvgriqqmvewylh*rrvttslr*v*s*qriki*tyld*gcxtsk


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15347-1 (Contig-U15347-1Q)
/CSM_Contig/Contig-U15347-1Q.Seq.d
(2522 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15347-1 (Contig-U15347-1Q) /CSM_Contig/Conti... 4785 0.0
Contig-U14746-1 (Contig-U14746-1Q) /CSM_Contig/Conti... 48 7e-05
Contig-U15614-1 (Contig-U15614-1Q) /CSM_Contig/Conti... 44 0.001
Contig-U16403-1 (Contig-U16403-1Q) /CSM_Contig/Conti... 42 0.004
Contig-U16315-1 (Contig-U16315-1Q) /CSM_Contig/Conti... 42 0.004
Contig-U13840-1 (Contig-U13840-1Q) /CSM_Contig/Conti... 42 0.004
Contig-U11510-1 (Contig-U11510-1Q) /CSM_Contig/Conti... 42 0.004
Contig-U10720-1 (Contig-U10720-1Q) /CSM_Contig/Conti... 42 0.004
Contig-U14952-1 (Contig-U14952-1Q) /CSM_Contig/Conti... 36 0.26
Contig-U12036-1 (Contig-U12036-1Q) /CSM_Contig/Conti... 36 0.26

>Contig-U15347-1 (Contig-U15347-1Q) /CSM_Contig/Contig-U15347-1Q.Seq.d
Length = 2522

Score = 4785 bits (2414), Expect = 0.0
Identities = 2490/2522 (98%)
Strand = Plus / Plus


Query: 1 cactgttggcctactggtaaatttgaatttgaacgttttaaagnccaacggtctcttgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cactgttggcctactggtaaatttgaatttgaacgttttaaagnccaacggtctcttgga 60


Query: 61 tgccgaagcagagaaattnnnnnnngataaagagaaagaatttgaatctaaaagaccaat 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 61 tgccgaagcagagaaattaaaaaaagataaagagaaagaatttgaatctaaaagaccaat 120


Query: 121 tgatgaaaccactggtatgaaaattccaatccacaaagttacacaaaccgaaaaaatcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgatgaaaccactggtatgaaaattccaatccacaaagttacacaaaccgaaaaaatcag 180


Query: 181 atatgacccaattttgcgtgatgcattcccatcaccattggttgcagatcaaaaagttgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atatgacccaattttgcgtgatgcattcccatcaccattggttgcagatcaaaaagttgg 240


Query: 241 aggaatagatgaagaaattgatcaacttgatgaagaagatcatgatgaagaattttcatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aggaatagatgaagaaattgatcaacttgatgaagaagatcatgatgaagaattttcatt 300


Query: 301 agagaataaagaaagtaaaatcaaaatgttaattgaaaagatggaagatcaatcaaacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agagaataaagaaagtaaaatcaaaatgttaattgaaaagatggaagatcaatcaaacaa 360


Query: 361 agacccacaatttaaactcatggttatgaatttcctcgatgatggtattccattaaaaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agacccacaatttaaactcatggttatgaatttcctcgatgatggtattccattaaaaga 420


Query: 421 taaattaatatttagagatgattttgaaatttcagcagaaactttaaagtcattttcaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taaattaatatttagagatgattttgaaatttcagcagaaactttaaagtcattttcaat 480


Query: 481 ggtgaatgaagccgatgacgaccaactcgactctcaagttgaattatcagagaaagagaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ggtgaatgaagccgatgacgaccaactcgactctcaagttgaattatcagagaaagagaa 540


Query: 541 aaaagtcattggaatagctcaacaaaagattttagatttacaaattaaagagatagcaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaaagtcattggaatagctcaacaaaagattttagatttacaaattaaagagatagcaaa 600


Query: 601 agattataaattcaattcatcattggagcagaagagattggatattctctttagaaataa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 agattataaattcaattcatcattggagcagaagagattggatattctctttagaaataa 660


Query: 661 tactattttaagatataaagctaaagaggcaggtgcaattcaaaaggatggttcaattga 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tactattttaagatataaagctaaagaggcaggtgcaattcaaaaggatggttcaattga 720


Query: 721 tatgaaaaaacttttacaacaaccacttggtattgaagatttaactcgntattcattgga 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tatgaaaaaacttttacaacaaccacttggtattgaagatttaactcgntattcattgga 780


Query: 781 tttctcgagtgaaaactctggtaattacatctatcaagatggtcaattattgaaacaatt 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tttctcgagtgaaaactctggtaattacatctatcaagatggtcaattattgaaacaatt 840


Query: 841 cgatgatggtttcaccatgccatacgagaaattgtatgaagaggatgtaaagagtcnnnn 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 cgatgatggtttcaccatgccatacgagaaattgtatgaagaggatgtaaagagtcaaaa 900


Query: 901 nnnncttgataaattgaaatccgctgccaacaaggtgatttgctttaccaatggaaaagg 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 aaaacttgataaattgaaatccgctgccaacaaggtgatttgctttaccaatggaaaagg 960


Query: 961 atcagcaagagagggtgaagagatcttggaagaggtttctctatcagaaatggatgcctt 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 atcagcaagagagggtgaagagatcttggaagaggtttctctatcagaaatggatgcctt 1020


Query: 1021 acatactttcattgatatgtaaaagtcattggaatagctcaacaaaagattttagattta 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 acatactttcattgatatgtaaaagtcattggaatagctcaacaaaagattttagattta 1080


Query: 1081 caaattaaagagatagcaaaagattataaattcaattcatcattggagcagaagagattg 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 caaattaaagagatagcaaaagattataaattcaattcatcattggagcagaagagattg 1140


Query: 1141 gatattctctttagaaataatactattttaagatataaagctaaagaggcaggtgcaatt 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 gatattctctttagaaataatactattttaagatataaagctaaagaggcaggtgcaatt 1200


Query: 1201 caaaaggatggttcaattgatatgaaaaaacttttacaacaaccacttggtattgaagat 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 caaaaggatggttcaattgatatgaaaaaacttttacaacaaccacttggtattgaagat 1260


Query: 1261 ttaactcgntattcattggatttctcgagtgaaaactctggtaattacatctatcaagat 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 ttaactcgntattcattggatttctcgagtgaaaactctggtaattacatctatcaagat 1320


Query: 1321 ggtcaattattgaaacaattcgatgatggtttcaccatgccatacgagaaattgtatgaa 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 ggtcaattattgaaacaattcgatgatggtttcaccatgccatacgagaaattgtatgaa 1380


Query: 1381 gaggatgtaaagagtcnnnnnnnncttgataaattgaaatccgctgccaacaaggtgatt 1440
|||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1381 gaggatgtaaagagtcaaaaaaaacttgataaattgaaatccgctgccaacaaggtgatt 1440


Query: 1441 tgctttaccaatggaaaaggatcagcaagagaggttgaagagatcttggaagagttttct 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 tgctttaccaatggaaaaggatcagcaagagaggttgaagagatcttggaagagttttct 1500


Query: 1501 ctatcagaaatggatgccttacatactttcattgatatgtttggtagtgatttagttgaa 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 ctatcagaaatggatgccttacatactttcattgatatgtttggtagtgatttagttgaa 1560


Query: 1561 tatagtcttaacttaccttctgaaggtaaatatatggacgcagtctatgaatatcttgaa 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 tatagtcttaacttaccttctgaaggtaaatatatggacgcagtctatgaatatcttgaa 1620


Query: 1621 aatgaaaaggagaggagaacaatgatgttaggtgattcattccgtgatcacgtcactctt 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 aatgaaaaggagaggagaacaatgatgttaggtgattcattccgtgatcacgtcactctt 1680


Query: 1681 tcaccaaatgaagctgaagagttcccaacccatgaaattatgctcccagaggatagagta 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1681 tcaccaaatgaagctgaagagttcccaacccatgaaattatgctcccagaggatagagta 1740


Query: 1741 ttggtcaccaaagaggattcaccaatggttaaagcattcaaagatagagtcattcaagag 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1741 ttggtcaccaaagaggattcaccaatggttaaagcattcaaagatagagtcattcaagag 1800


Query: 1801 ggtcttttaaatgatttccaaaccaagatcgatctcgtcaatgatcaaccacaatatgaa 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1801 ggtcttttaaatgatttccaaaccaagatcgatctcgtcaatgatcaaccacaatatgaa 1860


Query: 1861 tcccaccttttcatggaagagtacaaagctaaactctatgaaaatgagaaacaactccaa 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1861 tcccaccttttcatggaagagtacaaagctaaactctatgaaaatgagaaacaactccaa 1920


Query: 1921 aaagatttactcgagaccagagatccaatgatgattcgtaatttcattaaatacaaatac 1980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1921 aaagatttactcgagaccagagatccaatgatgattcgtaatttcattaaatacaaatac 1980


Query: 1981 gatcaacaaaaagagttactcgatcaaaagaaggaacaagaatacaacgatcacacttca 2040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1981 gatcaacaaaaagagttactcgatcaaaagaaggaacaagaatacaacgatcacacttca 2040


Query: 2041 actatgaatgaaatcgttcaagaggtttctcaaggttccctatcaaatatcgatccacca 2100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2041 actatgaatgaaatcgttcaagaggtttctcaaggttccctatcaaatatcgatccacca 2100


Query: 2101 atctatcatcctgtcactggtaaattatttacaccnnnnnnnnngaatccaaaatgtctc 2160
||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2101 atctatcatcctgtcactggtaaattatttacaccaaaaaaaaagaatccaaaatgtctc 2160


Query: 2161 ctttgtcaaaatccaaattggcaagttgatccactcaatactcctttcctttccatctat 2220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2161 ctttgtcaaaatccaaattggcaagttgatccactcaatactcctttcctttccatctat 2220


Query: 2221 ttaaataaagccggtgatatgcttccaagacatttcagtggtaattgtttaaaacatcaa 2280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2221 ttaaataaagccggtgatatgcttccaagacatttcagtggtaattgtttaaaacatcaa 2280


Query: 2281 aagaagatcgttaaaaccattagacaagctaaatctttaggtatcttctcctacaagaat 2340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2281 aagaagatcgttaaaaccattagacaagctaaatctttaggtatcttctcctacaagaat 2340


Query: 2341 ggtactttcacaatttataatccaaatgtatatagtctcaccaatcaagagttggaagaa 2400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2341 ggtactttcacaatttataatccaaatgtatatagtctcaccaatcaagagttggaagaa 2400


Query: 2401 tacaacaaatggttgaatggtacttacactaaagaagagttacaacaagtttacgatgag 2460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2401 tacaacaaatggttgaatggtacttacactaaagaagagttacaacaagtttacgatgag 2460


Query: 2461 tatgaagctagcaaagaattaagatttaaacctacttggactgaggctgttnaacttcca 2520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2461 tatgaagctagcaaagaattaagatttaaacctacttggactgaggctgttnaacttcca 2520


Query: 2521 aa 2522
||
Sbjct: 2521 aa 2522


>Contig-U14746-1 (Contig-U14746-1Q) /CSM_Contig/Contig-U14746-1Q.Seq.d
Length = 1124

Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus


Query: 1 cactgttggcctactggtaaattt 24
||||||||||||||||||||||||
Sbjct: 1 cactgttggcctactggtaaattt 24


>Contig-U15614-1 (Contig-U15614-1Q) /CSM_Contig/Contig-U15614-1Q.Seq.d
Length = 1874

Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 1 cactgttggcctactggtaaat 22
||||||||||||||||||||||
Sbjct: 1 cactgttggcctactggtaaat 22


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 44,079
Number of Sequences: 8402
Number of extensions: 44079
Number of successful extensions: 5289
Number of sequences better than 10.0: 677
length of query: 2522
length of database: 8,075,542
effective HSP length: 17
effective length of query: 2505
effective length of database: 7,932,708
effective search space: 19871433540
effective search space used: 19871433540
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 1.24
Homology vs DNA
Query= Contig-U15347-1 (Contig-U15347-1Q) /CSM_Contig/Contig-U15347-1Q.Seq.d
(2522 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ400378) Dictyostelium discoideum cDNA clone:dds9p24, 3' e... 1403 0.0 1
(BJ380852) Dictyostelium discoideum cDNA clone:ddc39e13, 3' ... 1148 0.0 1
(C25777) Dictyostelium discoideum gamete cDNA, clone FC-BC03. 1110 0.0 1
(AU261503) Dictyostelium discoideum vegetative cDNA clone:VS... 672 0.0 2
(BJ388523) Dictyostelium discoideum cDNA clone:dds9p24, 5' e... 932 0.0 2
(BJ384367) Dictyostelium discoideum cDNA clone:ddc49n06, 3' ... 720 0.0 2
(BJ444375) Dictyostelium discoideum cDNA clone:ddv56n02, 3' ... 617 0.0 2
(BJ413461) Dictyostelium discoideum cDNA clone:ddv15l15, 5' ... 716 0.0 2
(BJ445773) Dictyostelium discoideum cDNA clone:ddv60i13, 3' ... 605 0.0 2
(EK489166) 1095505005411 Global-Ocean-Sampling_GS-32-01-01-1... 54 0.026 1
(AM466705) Vitis vinifera, whole genome shotgun sequence, co... 36 0.036 6
(CJ435334) Macaca fascicularis mRNA, clone: QccE-12370, 5' e... 36 0.095 3
(BW996389) Cryptomeria japonica cDNA, clone: CR0054, express... 52 0.10 1
(BX927309) Zebrafish DNA sequence from clone CH211-171O19 in... 42 0.12 5
(BJ415998) Dictyostelium discoideum cDNA clone:ddv24a17, 5' ... 40 0.14 2
(CR354391) Zebrafish DNA sequence from clone CH211-256L9 in ... 42 0.24 5
(BX548244) Zebrafish DNA sequence from clone CH211-220I15 in... 42 0.27 6
(AC167059) Bos taurus clone CH240-183C21, WORKING DRAFT SEQU... 34 0.35 10
(EH014229) USDA-FP_186950 Lysiphlebus testaceipes adult whol... 42 0.70 3
(BJ326682) Dictyostelium discoideum cDNA clone:dda17i14, 5' ... 44 0.74 2
(CR628404) Zebrafish DNA sequence from clone CH211-156B18 in... 40 0.86 6
(CJ447784) Macaca fascicularis mRNA, clone: QflA-13131, 5' e... 46 0.93 2
(AP009301) Solanum lycopersicum genomic DNA, chromosome 8, c... 42 1.3 5
(AC114232) Rattus norvegicus clone CH230-322O8, *** SEQUENCI... 38 1.3 5
(EK360651) 1095468946698 Global-Ocean-Sampling_GS-31-01-01-1... 38 1.6 3
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 36 1.6 19
(EJ234157) 1092404082267 Global-Ocean-Sampling_GS-27-01-01-1... 48 1.6 1
(DU876573) 219205 Tomato HindIII BAC Library Solanum lycoper... 48 1.6 1
(CZ540558) SRAA-aad32f08.g1 Strongyloides ratti whole genome... 48 1.6 1
(CZ536012) SRAA-aad00h07.g1 Strongyloides ratti whole genome... 48 1.6 1
(CJ469074) Macaca fascicularis mRNA, clone: QnpA-19106, 5' e... 48 1.6 1
(CJ455129) Macaca fascicularis mRNA, clone: QflA-20901, 5' e... 48 1.6 1
(CJ443291) Macaca fascicularis mRNA, clone: QccE-20843, 5' e... 48 1.6 1
(BJ413426) Dictyostelium discoideum cDNA clone:ddv15d16, 5' ... 48 1.6 1
(BJ389645) Dictyostelium discoideum cDNA clone:dds19e16, 5' ... 48 1.6 1
(EK392491) 1095469507420 Global-Ocean-Sampling_GS-31-01-01-1... 34 1.6 4
(CZ196696) AIAA-aag88j09.g1 Ancylostoma caninum whole genome... 36 1.7 2
(BW562300) Ciona savignyi cDNA, clone:cslv064h14, 3'end, sin... 34 1.7 3
(BJ336770) Dictyostelium discoideum cDNA clone:dda55h01, 5' ... 36 1.7 3
(BJ362644) Dictyostelium discoideum cDNA clone:ddc22j20, 5' ... 36 2.4 3
(CZ207982) AIAA-aac59m24.b1 Ancylostoma caninum whole genome... 36 2.6 2
(BD100483) Novel genes cloned in humanneuroblastoma and frag... 38 3.1 2
(BD020545) Novel gene and novel gene fragment cloned in huma... 38 3.1 2
(AC113096) Mus musculus chromosome 14, clone RP23-312M23, co... 34 3.1 2
(AC154466) Mus musculus BAC clone RP24-148D22 from 14, compl... 34 3.2 2
(AP000420) Arabidopsis thaliana genomic DNA, chromosome 3, P... 36 3.3 2
(DE342983) Bombyx mori genomic DNA, BAC clone:BET_041_O10. 30 3.4 4
(CW971840) AIAA-aaa49a03.g1 Ancylostoma caninum whole genome... 36 3.5 2
(CJ473370) Macaca fascicularis mRNA, clone: QorA-13349, 5' e... 42 3.5 2
(CW971354) AIAA-aaa40d06.g1 Ancylostoma caninum whole genome... 36 3.5 2
(CW701222) AIAA-aac37c06.g1 Ancylostoma caninum whole genome... 36 3.5 2
(CW700294) AIAA-aac35d10.g1 Ancylostoma caninum whole genome... 36 3.5 2
(CW965842) AIAA-aaa50b01.b1 Ancylostoma caninum whole genome... 36 3.7 2
(EJ503374) 1095403664493 Global-Ocean-Sampling_GS-28-01-01-1... 44 3.9 2
(AC216472) Populus trichocarpa clone POP059-A09, complete se... 38 3.9 7
(AY072076) Arabidopsis thaliana unknown protein (At3g28580) ... 36 4.1 2
(DN995745) TC108813 Human breast cancer tissue, large insert... 32 4.2 2
(AZ939344) 2M0198H14F Mouse 10kb plasmid UUGC2M library Mus ... 34 4.3 2
(B74050) T27K19TR TAMU Arabidopsis thaliana genomic clone T2... 36 4.3 2
(CB254234) 76-E010932-019-003-G20-T7R MPIZ-ADIS-019 Arabidop... 36 4.4 2
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 36 4.8 10
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 38 5.5 18
(CU151884) Zebrafish DNA sequence from clone CH211-196H1. 38 6.3 7
(CR548641) Zebrafish DNA sequence from clone CH211-255N14 in... 46 6.4 1
(AP010440) Lotus japonicus genomic DNA, chromosome 5, clone:... 46 6.4 1
(AC118996) Rattus norvegicus clone CH230-305H2, WORKING DRAF... 46 6.4 1
(CU929033) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 6.4 1
(CU915768) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 46 6.4 1
(AC219701) Bos taurus clone CH240-325K13, WORKING DRAFT SEQU... 46 6.4 1
(AC169254) Bos taurus clone CH240-248P17, WORKING DRAFT SEQU... 46 6.4 1
(AL738538) Danio rerio genomic clone DKEY-15O20, genomic sur... 46 6.4 1
(EJ245627) 1095335018216 Global-Ocean-Sampling_GS-27-01-01-1... 46 6.4 1
(DU661801) OG_ABa0056B16.r OG_ABa Oryza granulata genomic cl... 46 6.4 1
(DU657841) OG_ABa0049J03.f OG_ABa Oryza granulata genomic cl... 46 6.4 1
(DC231402) Plasmodium berghei strain ANKA cDNA clone:SG02177... 46 6.4 1
(DC223074) Plasmodium berghei strain ANKA cDNA clone:MZ00687... 46 6.4 1
(DC219608) Plasmodium berghei strain ANKA cDNA clone:MZ00132... 46 6.4 1
(CJ467803) Macaca fascicularis mRNA, clone: QnpA-17417, 5' e... 46 6.4 1
(CJ460347) Macaca fascicularis mRNA, clone: QmoA-12826, 5' e... 46 6.4 1
(CJ445034) Macaca fascicularis mRNA, clone: QflA-10159, 5' e... 46 6.4 1
(CJ444943) Macaca fascicularis mRNA, clone: QflA-10064, 5' e... 46 6.4 1
(CJ439767) Macaca fascicularis mRNA, clone: QccE-17051, 5' e... 46 6.4 1
(CJ435128) Macaca fascicularis mRNA, clone: QccE-12155, 5' e... 46 6.4 1
(CJ430650) Macaca fascicularis mRNA, clone: QbsA-10579, 5' e... 46 6.4 1
(BJ415084) Dictyostelium discoideum cDNA clone:ddv21j11, 5' ... 46 6.4 1
(BJ389640) Dictyostelium discoideum cDNA clone:dds19d14, 5' ... 46 6.4 1
(BJ387633) Dictyostelium discoideum cDNA clone:dds3l20, 5' e... 46 6.4 1
(BJ326640) Dictyostelium discoideum cDNA clone:dda17k09, 5' ... 46 6.4 1
(BJ326325) Dictyostelium discoideum cDNA clone:dda16g03, 5' ... 46 6.4 1
(FM095052) Rattus norvegicus EST, 3'-end sequence, clone etn... 46 6.4 1
(FM080582) Rattus norvegicus EST, 3'-end sequence, clone etn... 46 6.4 1
(FM178379) Aliivibrio salmonicida LFI1238 chromosome 1 compl... 46 6.4 1
(CR854915) Zebrafish DNA sequence from clone DKEY-4G13 in li... 42 6.6 7
(CP000361) Arcobacter butzleri RM4018, complete genome. 36 7.1 22
(CR762381) Zebrafish DNA sequence from clone DKEY-284H11 in ... 38 7.4 6
(BJ360363) Dictyostelium discoideum cDNA clone:ddc5a19, 5' e... 42 8.6 2
(BJ416704) Dictyostelium discoideum cDNA clone:ddv27d04, 5' ... 42 9.8 2
(CU271644) Equus caballus GSS, BAC clone CH241-426J15, SP6 e... 44 10.0 2

>(BJ400378) Dictyostelium discoideum cDNA clone:dds9p24, 3' end,
single read.
Length = 739

Score = 1404 bits (708), Expect = 0.0
Identities = 711/712 (99%)
Strand = Plus / Minus


Query: 1405 cttgataaattgaaatccgctgccaacaaggtgatttgctttaccaatggaaaaggatca 1464
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 723 cttgataaattgaaatccgctgccaacaagttgatttgctttaccaatggaaaaggatca 664


Query: 1465 gcaagagaggttgaagagatcttggaagagttttctctatcagaaatggatgccttacat 1524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gcaagagaggttgaagagatcttggaagagttttctctatcagaaatggatgccttacat 604


Query: 1525 actttcattgatatgtttggtagtgatttagttgaatatagtcttaacttaccttctgaa 1584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 actttcattgatatgtttggtagtgatttagttgaatatagtcttaacttaccttctgaa 544


Query: 1585 ggtaaatatatggacgcagtctatgaatatcttgaaaatgaaaaggagaggagaacaatg 1644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ggtaaatatatggacgcagtctatgaatatcttgaaaatgaaaaggagaggagaacaatg 484


Query: 1645 atgttaggtgattcattccgtgatcacgtcactctttcaccaaatgaagctgaagagttc 1704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 atgttaggtgattcattccgtgatcacgtcactctttcaccaaatgaagctgaagagttc 424


Query: 1705 ccaacccatgaaattatgctcccagaggatagagtattggtcaccaaagaggattcacca 1764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ccaacccatgaaattatgctcccagaggatagagtattggtcaccaaagaggattcacca 364


Query: 1765 atggttaaagcattcaaagatagagtcattcaagagggtcttttaaatgatttccaaacc 1824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 atggttaaagcattcaaagatagagtcattcaagagggtcttttaaatgatttccaaacc 304


Query: 1825 aagatcgatctcgtcaatgatcaaccacaatatgaatcccaccttttcatggaagagtac 1884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aagatcgatctcgtcaatgatcaaccacaatatgaatcccaccttttcatggaagagtac 244


Query: 1885 aaagctaaactctatgaaaatgagaaacaactccaaaaagatttactcgagaccagagat 1944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aaagctaaactctatgaaaatgagaaacaactccaaaaagatttactcgagaccagagat 184


Query: 1945 ccaatgatgattcgtaatttcattaaatacaaatacgatcaacaaaaagagttactcgat 2004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ccaatgatgattcgtaatttcattaaatacaaatacgatcaacaaaaagagttactcgat 124


Query: 2005 caaaagaaggaacaagaatacaacgatcacacttcaactatgaatgaaatcgttcaagag 2064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 caaaagaaggaacaagaatacaacgatcacacttcaactatgaatgaaatcgttcaagag 64


Query: 2065 gtttctcaaggttccctatcaaatatcgatccaccaatctatcatcctgtca 2116
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 gtttctcaaggttccctatcaaatatcgatccaccaatctatcatcctgtca 12

Score = 246 bits (124), Expect = 3e-60
Identities = 133/136 (97%)
Strand = Plus / Minus


Query: 905 cttgataaattgaaatccgctgccaacaaggtgatttgctttaccaatggaaaaggatca 964
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 723 cttgataaattgaaatccgctgccaacaagttgatttgctttaccaatggaaaaggatca 664


Query: 965 gcaagagagggtgaagagatcttggaagaggtttctctatcagaaatggatgccttacat 1024
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 663 gcaagagaggttgaagagatcttggaagagttttctctatcagaaatggatgccttacat 604


Query: 1025 actttcattgatatgt 1040
||||||||||||||||
Sbjct: 603 actttcattgatatgt 588

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 3,110,604,663
Number of extensions: 186696739
Number of successful extensions: 14817213
Number of sequences better than 10.0: 114
Length of query: 2522
Length of database: 98,766,808,389
Length adjustment: 25
Effective length of query: 2497
Effective length of database: 96,311,147,814
Effective search space: 240488936091558
Effective search space used: 240488936091558
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)

protein update 2009. 7.16
Homology vs Protein
Query= Contig-U15347-1 (Contig-U15347-1Q) /CSM_Contig/Contig-U15347-1Q.Seq.d
(2522 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q9WZ74) RecName: Full=30S ribosomal protein S18; &A72355(A7235... 55 2e-05
(Q181R4) RecName: Full=30S ribosomal protein S18; &AM180355_375... 54 3e-05
(B1L8K5) RecName: Full=30S ribosomal protein S18; &CP000969_325... 53 6e-05
(Q8R6M3) RecName: Full=30S ribosomal protein S18; &AE008691_256... 51 2e-04
CP001102_366(CP001102|pid:none) Candidatus Amoebophilus asiaticu... 50 4e-04
(Q2RM70) RecName: Full=30S ribosomal protein S18; &CP000232_129... 50 4e-04
(A5N438) RecName: Full=30S ribosomal protein S18; &AP009049_345... 50 4e-04
CP001089_2582(CP001089|pid:none) Geobacter lovleyi SZ, complete ... 49 7e-04
(A5G7R2) RecName: Full=30S ribosomal protein S18; &CP000698_361... 49 7e-04
(B2A454) RecName: Full=30S ribosomal protein S18; &CP001034_286... 49 9e-04
CP001390_1552(CP001390|pid:none) Geobacter sp. FRC-32, complete ... 49 9e-04
(O53125) RecName: Full=30S ribosomal protein S18; &A87245(A8724... 49 9e-04
CP001185_626(CP001185|pid:none) Thermosipho africanus TCF52B, co... 49 0.001
(Q2IM64) RecName: Full=30S ribosomal protein S18; &CP000251_116... 48 0.002
CP001146_1188(CP001146|pid:none) Dictyoglomus thermophilum H-6-1... 48 0.002
CP000771_655(CP000771|pid:none) Fervidobacterium nodosum Rt17-B1... 48 0.002
(A7H6J3) RecName: Full=30S ribosomal protein S18; &CP000769_119... 48 0.002
(A3DHF8) RecName: Full=30S ribosomal protein S18; &CP000568_214... 48 0.002
CP000879_545(CP000879|pid:none) Petrotoga mobilis SJ95, complete... 48 0.002
CP001124_2734(CP001124|pid:none) Geobacter bemidjiensis Bem, com... 48 0.002
(A8ZRQ2) RecName: Full=30S ribosomal protein S18; &CP000859_9(C... 48 0.002
CP001634_309(CP001634|pid:none) Kosmotoga olearia TBF 19.5.1, co... 48 0.002
CP001104_1897(CP001104|pid:none) Eubacterium eligens ATCC 27750,... 48 0.002
(B4ULC0) RecName: Full=30S ribosomal protein S18; &CP001131_124... 47 0.003
(Q24MB9) RecName: Full=30S ribosomal protein S18; &AP008230_503... 47 0.003
CP000448_2467(CP000448|pid:none) Syntrophomonas wolfei subsp. wo... 47 0.003
(A0R7F7) RecName: Full=30S ribosomal protein S18 2; &CP000480_6... 47 0.003
(Q97CX4) RecName: Full=30S ribosomal protein S18; &AE001437_365... 47 0.003
(Q47K96) RecName: Full=30S ribosomal protein S18; &CP000088_308... 47 0.003
(Q39RR3) RecName: Full=30S ribosomal protein S18; &CP000148_281... 47 0.003
(A5IY67) RecName: Full=30S ribosomal protein S18; &CU179680_279... 47 0.003
(A8MED6) RecName: Full=30S ribosomal protein S18; &CP000853_37(... 47 0.004
(Q3AG25) RecName: Full=30S ribosomal protein S18; &CP000141_37(... 46 0.006
(Q2LUJ7) RecName: Full=30S ribosomal protein S18; &CP000252_187... 46 0.006
CU458896_4862(CU458896|pid:none) Mycobacterium abscessus chromos... 46 0.008
CP001087_1842(CP001087|pid:none) Desulfobacterium autotrophicum ... 46 0.008
(Q3A318) RecName: Full=30S ribosomal protein S18; &CP000142_214... 46 0.008
(A0PKH7) RecName: Full=30S ribosomal protein S18 1; &(B2HIB9) R... 46 0.008
(Q4A5M9) RecName: Full=30S ribosomal protein S18; &AE017245_527... 46 0.008
CP001357_1013(CP001357|pid:none) Brachyspira hyodysenteriae WA1,... 46 0.008
(B1I6S9) RecName: Full=30S ribosomal protein S18; &CP000860_213... 46 0.008
CP001348_75(CP001348|pid:none) Clostridium cellulolyticum H10, c... 46 0.008
(Q0SPR8) RecName: Full=30S ribosomal protein S18; &(Q0TM10) Rec... 45 0.010
CP000885_3728(CP000885|pid:none) Clostridium phytofermentans ISD... 45 0.010
(A4T4N9) RecName: Full=30S ribosomal protein S18 1; &CP000656_8... 45 0.013
(A6LIX8) RecName: Full=30S ribosomal protein S18; &CP000140_384... 45 0.017
(A0LN58) RecName: Full=30S ribosomal protein S18; &CP000478_315... 45 0.017
(Q4A872) RecName: Full=30S ribosomal protein S18; &(Q4AA45) Rec... 45 0.017
(Q6AK01) RecName: Full=30S ribosomal protein S18; &CR522870_259... 44 0.022
AF489521_43(AF489521|pid:none) Lactococcus bacteriophage 4268, c... 44 0.022
(A6M3L0) RecName: Full=30S ribosomal protein S18; &CP000721_500... 44 0.022
AF176025_15(AF176025|pid:none) Lactococcus phage BK5-T, complete... 44 0.022
(Q74FE3) RecName: Full=30S ribosomal protein S18; &AE017180_662... 44 0.022
FM864216_441(FM864216|pid:none) Mycoplasma conjunctivae HRC/581T... 44 0.022
AP009608_351(AP009608|pid:none) Mycoplasma fermentans PG18 DNA, ... 44 0.038
(Q0RAR6) RecName: Full=30S ribosomal protein S18 2; &CT573213_6... 44 0.038
(A0LWU3) RecName: Full=30S ribosomal protein S18; &CP000481_212... 44 0.038
AP008957_5829(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 44 0.038
CP001229_464(CP001229|pid:none) Sulfurihydrogenibium azorense Az... 43 0.049
(Q8A5S6) RecName: Full=30S ribosomal protein S18; &AE015928_216... 43 0.049
(Q2J4C6) RecName: Full=30S ribosomal protein S18; &CP000249_447... 43 0.049
BT057844_1(BT057844|pid:none) Salmo salar clone ssal-evd-556-123... 42 0.084
(P82917) RecName: Full=28S ribosomal protein S18c, mitochondrial... 42 0.11
BX649525_4(BX649525|pid:none) Zebrafish DNA sequence from clone ... 42 0.11
BC134080_1(BC134080|pid:none) Danio rerio mitochondrial ribosoma... 42 0.11
(A1SQS2) RecName: Full=30S ribosomal protein S18; &CP000509_460... 42 0.14
CP000880_3292(CP000880|pid:none) Salmonella enterica subsp. ariz... 42 0.14
(Q5L9B6) RecName: Full=30S ribosomal protein S18; &(Q64PH8) Rec... 42 0.14
(A8L8T2) RecName: Full=30S ribosomal protein S18; &CP000820_716... 42 0.14
CP001147_782(CP001147|pid:none) Thermodesulfovibrio yellowstonii... 41 0.19
AE014186_199(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 41 0.19
(P66470) RecName: Full=30S ribosomal protein S18 1; &(P66471) R... 41 0.19
(Q3Z7N9) RecName: Full=30S ribosomal protein S18; &CP000027_100... 41 0.25
(Q5GSD5) RecName: Full=30S ribosomal protein S18; &AE017321_497... 41 0.25
(B0TE71) RecName: Full=30S ribosomal protein S18; &CP000930_164... 41 0.25
(A5FQL1) RecName: Full=30S ribosomal protein S18; &(Q3ZY14) Rec... 41 0.25
(A2RCR6) RecName: Full=30S ribosomal protein S18; &(B4U153) Rec... 40 0.32
AP010656_18(AP010656|pid:none) Candidatus Azobacteroides pseudot... 40 0.32
AK088290_1(AK088290|pid:none) Mus musculus 2 days neonate thymus... 40 0.32
(A1VF29) RecName: Full=30S ribosomal protein S18; &(Q72DH2) Rec... 40 0.32
(Q5WAH5) RecName: Full=30S ribosomal protein S18; &AP006627_409... 40 0.32
(P21475) RecName: Full=30S ribosomal protein S18; AltName: Full=... 40 0.42
(A5FE76) RecName: Full=30S ribosomal protein S18; &CP000685_345... 40 0.42
(Q03IV5) RecName: Full=30S ribosomal protein S18; &(Q5LY50) Rec... 40 0.55
CU633865_131(CU633865|pid:none) Podospora anserina genomic DNA c... 40 0.55
FM992691_467(FM992691|pid:none) Candida dubliniensis CD36 chromo... 40 0.55
AM180355_805(AM180355|pid:none) Clostridium difficile 630 comple... 39 0.71
(Q4G3D9) RecName: Full=30S ribosomal protein S18, chloroplastic;... 39 0.71
(A0RLQ1) RecName: Full=30S ribosomal protein S18; &(A9VTK8) Rec... 39 0.71
(O66476) RecName: Full=30S ribosomal protein S18; &A70306(A7030... 39 0.71
(Q03UT3) RecName: Full=30S ribosomal protein S18; &CP000414_186... 39 0.93
(B7HGD2) RecName: Full=30S ribosomal protein S18; &(B7HZF9) Rec... 39 0.93
(Q312D6) RecName: Full=30S ribosomal protein S18; &CP000112_140... 39 0.93
AX885771_1(AX885771|pid:none) Sequence 1634 from Patent EP1033401. 39 0.93
CT030148_30(CT030148|pid:none) Kuenenia stuttgartiensis genome f... 39 0.93
(Q3ABU1) RecName: Full=MutS2 protein; &CP000141_1521(CP000141|p... 39 0.93
FJ493497_74(FJ493497|pid:none) Monomastix sp. OKE-1 chloroplast,... 39 0.93
(A4VXF9) RecName: Full=30S ribosomal protein S18; &(A4W3Q0) Rec... 39 0.93
(A8FJE5) RecName: Full=30S ribosomal protein S18; &CP000813_366... 39 0.93
CP001080_1637(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP... 39 0.93
CP001071_92(CP001071|pid:none) Akkermansia muciniphila ATCC BAA-... 39 0.93
(Q54TW0) RecName: Full=Probable polyketide synthase 18; ... 39 1.2
(Q1IHW4) RecName: Full=30S ribosomal protein S18; &CP000360_453... 39 1.2
R3BS18(S03556)ribosomal protein S18 - Bacillus stearothermophilus 39 1.2
CP000557_3375(CP000557|pid:none) Geobacillus thermodenitrificans... 39 1.2
CP000560_3675(CP000560|pid:none) Bacillus amyloliquefaciens FZB4... 39 1.2
CR761363_1(CR761363|pid:none) Xenopus tropicalis finished cDNA, ... 39 1.2
AX969928_1(AX969928|pid:none) Sequence 731 from Patent EP1104808. 39 1.2
BA000026_225(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c... 39 1.2
(Q73M34) RecName: Full=30S ribosomal protein S18; &AE017226_166... 39 1.2
CP000233_1351(CP000233|pid:none) Lactobacillus salivarius UCC118... 39 1.2
CP001638_3110(CP001638|pid:none) Geobacillus sp. WCH70, complete... 39 1.2
(B5E6A4) RecName: Full=30S ribosomal protein S18; &CP001015_145... 39 1.2
CP000922_2815(CP000922|pid:none) Anoxybacillus flavithermus WK1,... 38 1.6
AP009384_3643(AP009384|pid:none) Azorhizobium caulinodans ORS 57... 38 1.6
CP000468_1337(CP000468|pid:none) Escherichia coli APEC O1, compl... 38 2.1
(Q5HRZ3) RecName: Full=30S ribosomal protein S18; &(Q8CQP6) Rec... 38 2.1
AE014185_298(AE014185|pid:none) Plasmodium falciparum 3D7 chromo... 38 2.1
AL844506_178(AL844506|pid:none) Plasmodium falciparum 3D7 chromo... 38 2.1
(A2RNZ2) RecName: Full=30S ribosomal protein S18; &(Q02VU1) Rec... 38 2.1
CP001358_1999(CP001358|pid:none) Desulfovibrio desulfuricans sub... 38 2.1
CP000740_652(CP000740|pid:none) Sinorhizobium medicae WSM419 pla... 38 2.1
(Q73GZ6) RecName: Full=30S ribosomal protein S18; &AE017196_701... 38 2.1
CP000768_1530(CP000768|pid:none) Campylobacter jejuni subsp. doy... 38 2.1
AM295250_28(AM295250|pid:none) Staphylococcus carnosus subsp. ca... 38 2.1
AE017263_630(AE017263|pid:none) Mesoplasma florum L1 complete ge... 37 2.7
CP001472_1968(CP001472|pid:none) Acidobacterium capsulatum ATCC ... 37 2.7
AM910995_58(AM910995|pid:none) Plasmodium knowlesi strain H chro... 37 2.7
EU621675_1(EU621675|pid:none) Xenopus laevis laryngeal-specific ... 37 3.5
CP001146_1699(CP001146|pid:none) Dictyoglomus thermophilum H-6-1... 37 3.5
(P51256) RecName: Full=30S ribosomal protein S18, chloroplastic;... 37 3.5
CP000267_2686(CP000267|pid:none) Rhodoferax ferrireducens T118, ... 37 3.5
EF432759_1(EF432759|pid:none) Bombyx mori mitochondrial 28S ribo... 37 3.5
CP001277_545(CP001277|pid:none) Candidatus Hamiltonella defensa ... 37 4.6
AE017308_157(AE017308|pid:none) Mycoplasma mobile 163K complete ... 37 4.6
(Q1XDN1) RecName: Full=30S ribosomal protein S18, chloroplastic;... 37 4.6
AP009240_1448(AP009240|pid:none) Escherichia coli SE11 DNA, comp... 37 4.6
AF027728_1(AF027728|pid:none) Xenopus laevis kinesin-related pro... 37 4.6
(A5IPU8) RecName: Full=30S ribosomal protein S18; &(A6QE49) Rec... 37 4.6
BC067305_1(BC067305|pid:none) Xenopus tropicalis myosin heavy ch... 37 4.6
CP000932_565(CP000932|pid:none) Campylobacter lari RM2100, compl... 37 4.6
BC076678_1(BC076678|pid:none) Xenopus tropicalis myosin, heavy p... 37 4.6
(Q6F235) RecName: Full=30S ribosomal protein S18; &AE017263_82(... 36 6.0
(Q1WVN7) RecName: Full=30S ribosomal protein S18; &CP000233_9(C... 36 6.0
CR954246_1208(CR954246|pid:none) Pseudoalteromonas haloplanktis ... 36 6.0
BC041716_1(BC041716|pid:none) Xenopus laevis similar to myosin, ... 36 6.0
CP001357_1368(CP001357|pid:none) Brachyspira hyodysenteriae WA1,... 36 6.0
CP001078_2149(CP001078|pid:none) Clostridium botulinum E3 str. A... 36 6.0
(Q49UQ2) RecName: Full=30S ribosomal protein S18; &AP008934_237... 36 6.0
(Q5FN07) RecName: Full=30S ribosomal protein S18; &CP000033_9(C... 36 6.0
AE017196_413(AE017196|pid:none) Wolbachia endosymbiont of Drosop... 36 6.0
AK168140_1(AK168140|pid:none) Mus musculus CRL-1722 L5178Y-R cDN... 36 6.0
(Q6FXI5) RecName: Full=Kinesin-like protein CIN8; &CR380948_152... 36 6.0
AY603957_7(AY603957|pid:none) Clostsridium pasteurianum nitrogen... 36 6.0
CP001047_350(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ... 36 6.0
(P62659) RecName: Full=30S ribosomal protein S18; &(Q5SLQ0) Rec... 36 6.0
CP001393_233(CP001393|pid:none) Anaerocellum thermophilum DSM 67... 36 6.0
CP000246_1334(CP000246|pid:none) Clostridium perfringens ATCC 13... 36 6.0
AE009951_1736(AE009951|pid:none) Fusobacterium nucleatum subsp. ... 36 6.0
(A8YW49) RecName: Full=30S ribosomal protein S18; &CP000517_9(C... 36 6.0
CP000262_1692(CP000262|pid:none) Streptococcus pyogenes MGAS1075... 36 6.0
(A6Q466) RecName: Full=30S ribosomal protein S18; &AP009178_116... 36 7.9
AY913766_1(AY913766|pid:none) Xenopus laevis ventricular myosin ... 36 7.9
CP000552_835(CP000552|pid:none) Prochlorococcus marinus str. MIT... 36 7.9
AK158884_1(AK158884|pid:none) Mus musculus visual cortex cDNA, R... 36 7.9
AK228029_1(AK228029|pid:none) Arabidopsis thaliana mRNA for pept... 36 7.9
CP001022_2993(CP001022|pid:none) Exiguobacterium sibiricum 255-1... 36 7.9
CP001242_7(CP001242|pid:none) Borrelia afzelii ACA-1 plasmid lp2... 36 7.9
AP007281_1661(AP007281|pid:none) Lactobacillus reuteri JCM 1112 ... 36 7.9
BX548174_847(BX548174|pid:none) Prochlorococcus marinus MED4 com... 36 7.9
AP008971_1139(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA... 36 7.9
AB015468_3(AB015468|pid:none) Arabidopsis thaliana genomic DNA, ... 36 7.9
(B3W6R6) RecName: Full=30S ribosomal protein S18; &(Q03D45) Rec... 36 7.9
CP000939_500(CP000939|pid:none) Clostridium botulinum B1 str. Ok... 36 7.9
BC058507_1(BC058507|pid:none) Rattus norvegicus mitochondrial ri... 36 7.9
AE014188_212(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 36 7.9
(Q2JU22) RecName: Full=30S ribosomal protein S18; &CP000239_156... 36 7.9
AP008955_5922(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 36 7.9

>(Q9WZ74) RecName: Full=30S ribosomal protein S18; &A72355(A72355)
&AE000512_596(AE000512|pid:none)
Length = 75

Score = 54.7 bits (130), Expect = 2e-05
Identities = 25/66 (37%), Positives = 39/66 (59%)
Frame = +1

Query: 2137 KKKNPKCLLCQNPNWQVDPLNTPFLSIYLNKAGDMLPRHFSGNCLKHQKKIVKTIRQAKS 2316
KKK KC LC+ VD +T LS +L G ++P+ +GNC KHQ+ + I++A+
Sbjct: 7 KKKIKKCRLCEMKLDYVDYKDTRLLSEFLTDKGKIIPKRLTGNCSKHQRMVKVAIKRARQ 66

Query: 2317 LGIFSY 2334
+G+ Y
Sbjct: 67 MGLLPY 72

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 3,871,053,288
Number of extensions: 75556338
Number of successful extensions: 200599
Number of sequences better than 10.0: 178
Number of HSP's gapped: 200388
Number of HSP's successfully gapped: 183
Length of query: 840
Length of database: 1,051,180,864
Length adjustment: 137
Effective length of query: 703
Effective length of database: 607,772,281
Effective search space: 427263913543
Effective search space used: 427263913543
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.56 gvh: 0.23 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.09 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: endoplasmic reticulum

>> prediction for Contig-U15347-1 is nuc

VS (DIR, S) 1
VH (FL, L) 2
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 2
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0