Contig-U15347-1 |
Contig ID |
Contig-U15347-1 |
Contig update |
2004. 6.11 |
Contig sequence |
|
Gap |
no gap |
Contig length |
2522 |
Chromosome number (1..6, M) |
1 |
Chromosome length |
4919822 |
Start point |
3509501 |
End point |
3507860 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
8 |
Number of EST |
10 |
Link to clone list |
U15347 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
|
dna update |
2009. 1.24 |
Homology vs DNA |
Query= Contig-U15347-1 (Contig-U15347-1Q) /CSM_Contig/Contig-U15347-1Q.Seq.d (2522 letters)
Database: ddbj_B 98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ400378) Dictyostelium discoideum cDNA clone:dds9p24, 3' e... 1403 0.0 1 (BJ380852) Dictyostelium discoideum cDNA clone:ddc39e13, 3' ... 1148 0.0 1 (C25777) Dictyostelium discoideum gamete cDNA, clone FC-BC03. 1110 0.0 1 (AU261503) Dictyostelium discoideum vegetative cDNA clone:VS... 672 0.0 2 (BJ388523) Dictyostelium discoideum cDNA clone:dds9p24, 5' e... 932 0.0 2 (BJ384367) Dictyostelium discoideum cDNA clone:ddc49n06, 3' ... 720 0.0 2 (BJ444375) Dictyostelium discoideum cDNA clone:ddv56n02, 3' ... 617 0.0 2 (BJ413461) Dictyostelium discoideum cDNA clone:ddv15l15, 5' ... 716 0.0 2 (BJ445773) Dictyostelium discoideum cDNA clone:ddv60i13, 3' ... 605 0.0 2 (EK489166) 1095505005411 Global-Ocean-Sampling_GS-32-01-01-1... 54 0.026 1 (AM466705) Vitis vinifera, whole genome shotgun sequence, co... 36 0.036 6 (CJ435334) Macaca fascicularis mRNA, clone: QccE-12370, 5' e... 36 0.095 3 (BW996389) Cryptomeria japonica cDNA, clone: CR0054, express... 52 0.10 1 (BX927309) Zebrafish DNA sequence from clone CH211-171O19 in... 42 0.12 5 (BJ415998) Dictyostelium discoideum cDNA clone:ddv24a17, 5' ... 40 0.14 2 (CR354391) Zebrafish DNA sequence from clone CH211-256L9 in ... 42 0.24 5 (BX548244) Zebrafish DNA sequence from clone CH211-220I15 in... 42 0.27 6 (AC167059) Bos taurus clone CH240-183C21, WORKING DRAFT SEQU... 34 0.35 10 (EH014229) USDA-FP_186950 Lysiphlebus testaceipes adult whol... 42 0.70 3 (BJ326682) Dictyostelium discoideum cDNA clone:dda17i14, 5' ... 44 0.74 2 (CR628404) Zebrafish DNA sequence from clone CH211-156B18 in... 40 0.86 6 (CJ447784) Macaca fascicularis mRNA, clone: QflA-13131, 5' e... 46 0.93 2 (AP009301) Solanum lycopersicum genomic DNA, chromosome 8, c... 42 1.3 5 (AC114232) Rattus norvegicus clone CH230-322O8, *** SEQUENCI... 38 1.3 5 (EK360651) 1095468946698 Global-Ocean-Sampling_GS-31-01-01-1... 38 1.6 3 (AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 36 1.6 19 (EJ234157) 1092404082267 Global-Ocean-Sampling_GS-27-01-01-1... 48 1.6 1 (DU876573) 219205 Tomato HindIII BAC Library Solanum lycoper... 48 1.6 1 (CZ540558) SRAA-aad32f08.g1 Strongyloides ratti whole genome... 48 1.6 1 (CZ536012) SRAA-aad00h07.g1 Strongyloides ratti whole genome... 48 1.6 1 (CJ469074) Macaca fascicularis mRNA, clone: QnpA-19106, 5' e... 48 1.6 1 (CJ455129) Macaca fascicularis mRNA, clone: QflA-20901, 5' e... 48 1.6 1 (CJ443291) Macaca fascicularis mRNA, clone: QccE-20843, 5' e... 48 1.6 1 (BJ413426) Dictyostelium discoideum cDNA clone:ddv15d16, 5' ... 48 1.6 1 (BJ389645) Dictyostelium discoideum cDNA clone:dds19e16, 5' ... 48 1.6 1 (EK392491) 1095469507420 Global-Ocean-Sampling_GS-31-01-01-1... 34 1.6 4 (CZ196696) AIAA-aag88j09.g1 Ancylostoma caninum whole genome... 36 1.7 2 (BW562300) Ciona savignyi cDNA, clone:cslv064h14, 3'end, sin... 34 1.7 3 (BJ336770) Dictyostelium discoideum cDNA clone:dda55h01, 5' ... 36 1.7 3 (BJ362644) Dictyostelium discoideum cDNA clone:ddc22j20, 5' ... 36 2.4 3 (CZ207982) AIAA-aac59m24.b1 Ancylostoma caninum whole genome... 36 2.6 2 (BD100483) Novel genes cloned in humanneuroblastoma and frag... 38 3.1 2 (BD020545) Novel gene and novel gene fragment cloned in huma... 38 3.1 2 (AC113096) Mus musculus chromosome 14, clone RP23-312M23, co... 34 3.1 2 (AC154466) Mus musculus BAC clone RP24-148D22 from 14, compl... 34 3.2 2 (AP000420) Arabidopsis thaliana genomic DNA, chromosome 3, P... 36 3.3 2 (DE342983) Bombyx mori genomic DNA, BAC clone:BET_041_O10. 30 3.4 4 (CW971840) AIAA-aaa49a03.g1 Ancylostoma caninum whole genome... 36 3.5 2 (CJ473370) Macaca fascicularis mRNA, clone: QorA-13349, 5' e... 42 3.5 2 (CW971354) AIAA-aaa40d06.g1 Ancylostoma caninum whole genome... 36 3.5 2 (CW701222) AIAA-aac37c06.g1 Ancylostoma caninum whole genome... 36 3.5 2 (CW700294) AIAA-aac35d10.g1 Ancylostoma caninum whole genome... 36 3.5 2 (CW965842) AIAA-aaa50b01.b1 Ancylostoma caninum whole genome... 36 3.7 2 (EJ503374) 1095403664493 Global-Ocean-Sampling_GS-28-01-01-1... 44 3.9 2 (AC216472) Populus trichocarpa clone POP059-A09, complete se... 38 3.9 7 (AY072076) Arabidopsis thaliana unknown protein (At3g28580) ... 36 4.1 2 (DN995745) TC108813 Human breast cancer tissue, large insert... 32 4.2 2 (AZ939344) 2M0198H14F Mouse 10kb plasmid UUGC2M library Mus ... 34 4.3 2 (B74050) T27K19TR TAMU Arabidopsis thaliana genomic clone T2... 36 4.3 2 (CB254234) 76-E010932-019-003-G20-T7R MPIZ-ADIS-019 Arabidop... 36 4.4 2 (AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 36 4.8 10 (CU469464) Candidatus Phytoplasma mali strain AT complete ch... 38 5.5 18 (CU151884) Zebrafish DNA sequence from clone CH211-196H1. 38 6.3 7 (CR548641) Zebrafish DNA sequence from clone CH211-255N14 in... 46 6.4 1 (AP010440) Lotus japonicus genomic DNA, chromosome 5, clone:... 46 6.4 1 (AC118996) Rattus norvegicus clone CH230-305H2, WORKING DRAF... 46 6.4 1 (CU929033) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 6.4 1 (CU915768) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 46 6.4 1 (AC219701) Bos taurus clone CH240-325K13, WORKING DRAFT SEQU... 46 6.4 1 (AC169254) Bos taurus clone CH240-248P17, WORKING DRAFT SEQU... 46 6.4 1 (AL738538) Danio rerio genomic clone DKEY-15O20, genomic sur... 46 6.4 1 (EJ245627) 1095335018216 Global-Ocean-Sampling_GS-27-01-01-1... 46 6.4 1 (DU661801) OG_ABa0056B16.r OG_ABa Oryza granulata genomic cl... 46 6.4 1 (DU657841) OG_ABa0049J03.f OG_ABa Oryza granulata genomic cl... 46 6.4 1 (DC231402) Plasmodium berghei strain ANKA cDNA clone:SG02177... 46 6.4 1 (DC223074) Plasmodium berghei strain ANKA cDNA clone:MZ00687... 46 6.4 1 (DC219608) Plasmodium berghei strain ANKA cDNA clone:MZ00132... 46 6.4 1 (CJ467803) Macaca fascicularis mRNA, clone: QnpA-17417, 5' e... 46 6.4 1 (CJ460347) Macaca fascicularis mRNA, clone: QmoA-12826, 5' e... 46 6.4 1 (CJ445034) Macaca fascicularis mRNA, clone: QflA-10159, 5' e... 46 6.4 1 (CJ444943) Macaca fascicularis mRNA, clone: QflA-10064, 5' e... 46 6.4 1 (CJ439767) Macaca fascicularis mRNA, clone: QccE-17051, 5' e... 46 6.4 1 (CJ435128) Macaca fascicularis mRNA, clone: QccE-12155, 5' e... 46 6.4 1 (CJ430650) Macaca fascicularis mRNA, clone: QbsA-10579, 5' e... 46 6.4 1 (BJ415084) Dictyostelium discoideum cDNA clone:ddv21j11, 5' ... 46 6.4 1 (BJ389640) Dictyostelium discoideum cDNA clone:dds19d14, 5' ... 46 6.4 1 (BJ387633) Dictyostelium discoideum cDNA clone:dds3l20, 5' e... 46 6.4 1 (BJ326640) Dictyostelium discoideum cDNA clone:dda17k09, 5' ... 46 6.4 1 (BJ326325) Dictyostelium discoideum cDNA clone:dda16g03, 5' ... 46 6.4 1 (FM095052) Rattus norvegicus EST, 3'-end sequence, clone etn... 46 6.4 1 (FM080582) Rattus norvegicus EST, 3'-end sequence, clone etn... 46 6.4 1 (FM178379) Aliivibrio salmonicida LFI1238 chromosome 1 compl... 46 6.4 1 (CR854915) Zebrafish DNA sequence from clone DKEY-4G13 in li... 42 6.6 7 (CP000361) Arcobacter butzleri RM4018, complete genome. 36 7.1 22 (CR762381) Zebrafish DNA sequence from clone DKEY-284H11 in ... 38 7.4 6 (BJ360363) Dictyostelium discoideum cDNA clone:ddc5a19, 5' e... 42 8.6 2 (BJ416704) Dictyostelium discoideum cDNA clone:ddv27d04, 5' ... 42 9.8 2 (CU271644) Equus caballus GSS, BAC clone CH241-426J15, SP6 e... 44 10.0 2
>(BJ400378) Dictyostelium discoideum cDNA clone:dds9p24, 3' end, single read. Length = 739
Score = 1404 bits (708), Expect = 0.0 Identities = 711/712 (99%) Strand = Plus / Minus
Query: 1405 cttgataaattgaaatccgctgccaacaaggtgatttgctttaccaatggaaaaggatca 1464 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 723 cttgataaattgaaatccgctgccaacaagttgatttgctttaccaatggaaaaggatca 664
Query: 1465 gcaagagaggttgaagagatcttggaagagttttctctatcagaaatggatgccttacat 1524 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 663 gcaagagaggttgaagagatcttggaagagttttctctatcagaaatggatgccttacat 604
Query: 1525 actttcattgatatgtttggtagtgatttagttgaatatagtcttaacttaccttctgaa 1584 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 603 actttcattgatatgtttggtagtgatttagttgaatatagtcttaacttaccttctgaa 544
Query: 1585 ggtaaatatatggacgcagtctatgaatatcttgaaaatgaaaaggagaggagaacaatg 1644 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 543 ggtaaatatatggacgcagtctatgaatatcttgaaaatgaaaaggagaggagaacaatg 484
Query: 1645 atgttaggtgattcattccgtgatcacgtcactctttcaccaaatgaagctgaagagttc 1704 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 483 atgttaggtgattcattccgtgatcacgtcactctttcaccaaatgaagctgaagagttc 424
Query: 1705 ccaacccatgaaattatgctcccagaggatagagtattggtcaccaaagaggattcacca 1764 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 423 ccaacccatgaaattatgctcccagaggatagagtattggtcaccaaagaggattcacca 364
Query: 1765 atggttaaagcattcaaagatagagtcattcaagagggtcttttaaatgatttccaaacc 1824 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 363 atggttaaagcattcaaagatagagtcattcaagagggtcttttaaatgatttccaaacc 304
Query: 1825 aagatcgatctcgtcaatgatcaaccacaatatgaatcccaccttttcatggaagagtac 1884 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 303 aagatcgatctcgtcaatgatcaaccacaatatgaatcccaccttttcatggaagagtac 244
Query: 1885 aaagctaaactctatgaaaatgagaaacaactccaaaaagatttactcgagaccagagat 1944 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 243 aaagctaaactctatgaaaatgagaaacaactccaaaaagatttactcgagaccagagat 184
Query: 1945 ccaatgatgattcgtaatttcattaaatacaaatacgatcaacaaaaagagttactcgat 2004 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 183 ccaatgatgattcgtaatttcattaaatacaaatacgatcaacaaaaagagttactcgat 124
Query: 2005 caaaagaaggaacaagaatacaacgatcacacttcaactatgaatgaaatcgttcaagag 2064 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 123 caaaagaaggaacaagaatacaacgatcacacttcaactatgaatgaaatcgttcaagag 64
Query: 2065 gtttctcaaggttccctatcaaatatcgatccaccaatctatcatcctgtca 2116 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 63 gtttctcaaggttccctatcaaatatcgatccaccaatctatcatcctgtca 12
Score = 246 bits (124), Expect = 3e-60 Identities = 133/136 (97%) Strand = Plus / Minus
Query: 905 cttgataaattgaaatccgctgccaacaaggtgatttgctttaccaatggaaaaggatca 964 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 723 cttgataaattgaaatccgctgccaacaagttgatttgctttaccaatggaaaaggatca 664
Query: 965 gcaagagagggtgaagagatcttggaagaggtttctctatcagaaatggatgccttacat 1024 |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 663 gcaagagaggttgaagagatcttggaagagttttctctatcagaaatggatgccttacat 604
Query: 1025 actttcattgatatgt 1040 |||||||||||||||| Sbjct: 603 actttcattgatatgt 588
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 98226423 Number of Hits to DB: 3,110,604,663 Number of extensions: 186696739 Number of successful extensions: 14817213 Number of sequences better than 10.0: 114 Length of query: 2522 Length of database: 98,766,808,389 Length adjustment: 25 Effective length of query: 2497 Effective length of database: 96,311,147,814 Effective search space: 240488936091558 Effective search space used: 240488936091558 X1: 11 (21.8 bits) S2: 23 (46.1 bits)
|
protein update |
2009. 7.16 |
Homology vs Protein |
Query= Contig-U15347-1 (Contig-U15347-1Q) /CSM_Contig/Contig-U15347-1Q.Seq.d (2522 letters)
Database: nrp_B 3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
(Q9WZ74) RecName: Full=30S ribosomal protein S18; &A72355(A7235... 55 2e-05 (Q181R4) RecName: Full=30S ribosomal protein S18; &AM180355_375... 54 3e-05 (B1L8K5) RecName: Full=30S ribosomal protein S18; &CP000969_325... 53 6e-05 (Q8R6M3) RecName: Full=30S ribosomal protein S18; &AE008691_256... 51 2e-04 CP001102_366(CP001102|pid:none) Candidatus Amoebophilus asiaticu... 50 4e-04 (Q2RM70) RecName: Full=30S ribosomal protein S18; &CP000232_129... 50 4e-04 (A5N438) RecName: Full=30S ribosomal protein S18; &AP009049_345... 50 4e-04 CP001089_2582(CP001089|pid:none) Geobacter lovleyi SZ, complete ... 49 7e-04 (A5G7R2) RecName: Full=30S ribosomal protein S18; &CP000698_361... 49 7e-04 (B2A454) RecName: Full=30S ribosomal protein S18; &CP001034_286... 49 9e-04 CP001390_1552(CP001390|pid:none) Geobacter sp. FRC-32, complete ... 49 9e-04 (O53125) RecName: Full=30S ribosomal protein S18; &A87245(A8724... 49 9e-04 CP001185_626(CP001185|pid:none) Thermosipho africanus TCF52B, co... 49 0.001 (Q2IM64) RecName: Full=30S ribosomal protein S18; &CP000251_116... 48 0.002 CP001146_1188(CP001146|pid:none) Dictyoglomus thermophilum H-6-1... 48 0.002 CP000771_655(CP000771|pid:none) Fervidobacterium nodosum Rt17-B1... 48 0.002 (A7H6J3) RecName: Full=30S ribosomal protein S18; &CP000769_119... 48 0.002 (A3DHF8) RecName: Full=30S ribosomal protein S18; &CP000568_214... 48 0.002 CP000879_545(CP000879|pid:none) Petrotoga mobilis SJ95, complete... 48 0.002 CP001124_2734(CP001124|pid:none) Geobacter bemidjiensis Bem, com... 48 0.002 (A8ZRQ2) RecName: Full=30S ribosomal protein S18; &CP000859_9(C... 48 0.002 CP001634_309(CP001634|pid:none) Kosmotoga olearia TBF 19.5.1, co... 48 0.002 CP001104_1897(CP001104|pid:none) Eubacterium eligens ATCC 27750,... 48 0.002 (B4ULC0) RecName: Full=30S ribosomal protein S18; &CP001131_124... 47 0.003 (Q24MB9) RecName: Full=30S ribosomal protein S18; &AP008230_503... 47 0.003 CP000448_2467(CP000448|pid:none) Syntrophomonas wolfei subsp. wo... 47 0.003 (A0R7F7) RecName: Full=30S ribosomal protein S18 2; &CP000480_6... 47 0.003 (Q97CX4) RecName: Full=30S ribosomal protein S18; &AE001437_365... 47 0.003 (Q47K96) RecName: Full=30S ribosomal protein S18; &CP000088_308... 47 0.003 (Q39RR3) RecName: Full=30S ribosomal protein S18; &CP000148_281... 47 0.003 (A5IY67) RecName: Full=30S ribosomal protein S18; &CU179680_279... 47 0.003 (A8MED6) RecName: Full=30S ribosomal protein S18; &CP000853_37(... 47 0.004 (Q3AG25) RecName: Full=30S ribosomal protein S18; &CP000141_37(... 46 0.006 (Q2LUJ7) RecName: Full=30S ribosomal protein S18; &CP000252_187... 46 0.006 CU458896_4862(CU458896|pid:none) Mycobacterium abscessus chromos... 46 0.008 CP001087_1842(CP001087|pid:none) Desulfobacterium autotrophicum ... 46 0.008 (Q3A318) RecName: Full=30S ribosomal protein S18; &CP000142_214... 46 0.008 (A0PKH7) RecName: Full=30S ribosomal protein S18 1; &(B2HIB9) R... 46 0.008 (Q4A5M9) RecName: Full=30S ribosomal protein S18; &AE017245_527... 46 0.008 CP001357_1013(CP001357|pid:none) Brachyspira hyodysenteriae WA1,... 46 0.008 (B1I6S9) RecName: Full=30S ribosomal protein S18; &CP000860_213... 46 0.008 CP001348_75(CP001348|pid:none) Clostridium cellulolyticum H10, c... 46 0.008 (Q0SPR8) RecName: Full=30S ribosomal protein S18; &(Q0TM10) Rec... 45 0.010 CP000885_3728(CP000885|pid:none) Clostridium phytofermentans ISD... 45 0.010 (A4T4N9) RecName: Full=30S ribosomal protein S18 1; &CP000656_8... 45 0.013 (A6LIX8) RecName: Full=30S ribosomal protein S18; &CP000140_384... 45 0.017 (A0LN58) RecName: Full=30S ribosomal protein S18; &CP000478_315... 45 0.017 (Q4A872) RecName: Full=30S ribosomal protein S18; &(Q4AA45) Rec... 45 0.017 (Q6AK01) RecName: Full=30S ribosomal protein S18; &CR522870_259... 44 0.022 AF489521_43(AF489521|pid:none) Lactococcus bacteriophage 4268, c... 44 0.022 (A6M3L0) RecName: Full=30S ribosomal protein S18; &CP000721_500... 44 0.022 AF176025_15(AF176025|pid:none) Lactococcus phage BK5-T, complete... 44 0.022 (Q74FE3) RecName: Full=30S ribosomal protein S18; &AE017180_662... 44 0.022 FM864216_441(FM864216|pid:none) Mycoplasma conjunctivae HRC/581T... 44 0.022 AP009608_351(AP009608|pid:none) Mycoplasma fermentans PG18 DNA, ... 44 0.038 (Q0RAR6) RecName: Full=30S ribosomal protein S18 2; &CT573213_6... 44 0.038 (A0LWU3) RecName: Full=30S ribosomal protein S18; &CP000481_212... 44 0.038 AP008957_5829(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 44 0.038 CP001229_464(CP001229|pid:none) Sulfurihydrogenibium azorense Az... 43 0.049 (Q8A5S6) RecName: Full=30S ribosomal protein S18; &AE015928_216... 43 0.049 (Q2J4C6) RecName: Full=30S ribosomal protein S18; &CP000249_447... 43 0.049 BT057844_1(BT057844|pid:none) Salmo salar clone ssal-evd-556-123... 42 0.084 (P82917) RecName: Full=28S ribosomal protein S18c, mitochondrial... 42 0.11 BX649525_4(BX649525|pid:none) Zebrafish DNA sequence from clone ... 42 0.11 BC134080_1(BC134080|pid:none) Danio rerio mitochondrial ribosoma... 42 0.11 (A1SQS2) RecName: Full=30S ribosomal protein S18; &CP000509_460... 42 0.14 CP000880_3292(CP000880|pid:none) Salmonella enterica subsp. ariz... 42 0.14 (Q5L9B6) RecName: Full=30S ribosomal protein S18; &(Q64PH8) Rec... 42 0.14 (A8L8T2) RecName: Full=30S ribosomal protein S18; &CP000820_716... 42 0.14 CP001147_782(CP001147|pid:none) Thermodesulfovibrio yellowstonii... 41 0.19 AE014186_199(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 41 0.19 (P66470) RecName: Full=30S ribosomal protein S18 1; &(P66471) R... 41 0.19 (Q3Z7N9) RecName: Full=30S ribosomal protein S18; &CP000027_100... 41 0.25 (Q5GSD5) RecName: Full=30S ribosomal protein S18; &AE017321_497... 41 0.25 (B0TE71) RecName: Full=30S ribosomal protein S18; &CP000930_164... 41 0.25 (A5FQL1) RecName: Full=30S ribosomal protein S18; &(Q3ZY14) Rec... 41 0.25 (A2RCR6) RecName: Full=30S ribosomal protein S18; &(B4U153) Rec... 40 0.32 AP010656_18(AP010656|pid:none) Candidatus Azobacteroides pseudot... 40 0.32 AK088290_1(AK088290|pid:none) Mus musculus 2 days neonate thymus... 40 0.32 (A1VF29) RecName: Full=30S ribosomal protein S18; &(Q72DH2) Rec... 40 0.32 (Q5WAH5) RecName: Full=30S ribosomal protein S18; &AP006627_409... 40 0.32 (P21475) RecName: Full=30S ribosomal protein S18; AltName: Full=... 40 0.42 (A5FE76) RecName: Full=30S ribosomal protein S18; &CP000685_345... 40 0.42 (Q03IV5) RecName: Full=30S ribosomal protein S18; &(Q5LY50) Rec... 40 0.55 CU633865_131(CU633865|pid:none) Podospora anserina genomic DNA c... 40 0.55 FM992691_467(FM992691|pid:none) Candida dubliniensis CD36 chromo... 40 0.55 AM180355_805(AM180355|pid:none) Clostridium difficile 630 comple... 39 0.71 (Q4G3D9) RecName: Full=30S ribosomal protein S18, chloroplastic;... 39 0.71 (A0RLQ1) RecName: Full=30S ribosomal protein S18; &(A9VTK8) Rec... 39 0.71 (O66476) RecName: Full=30S ribosomal protein S18; &A70306(A7030... 39 0.71 (Q03UT3) RecName: Full=30S ribosomal protein S18; &CP000414_186... 39 0.93 (B7HGD2) RecName: Full=30S ribosomal protein S18; &(B7HZF9) Rec... 39 0.93 (Q312D6) RecName: Full=30S ribosomal protein S18; &CP000112_140... 39 0.93 AX885771_1(AX885771|pid:none) Sequence 1634 from Patent EP1033401. 39 0.93 CT030148_30(CT030148|pid:none) Kuenenia stuttgartiensis genome f... 39 0.93 (Q3ABU1) RecName: Full=MutS2 protein; &CP000141_1521(CP000141|p... 39 0.93 FJ493497_74(FJ493497|pid:none) Monomastix sp. OKE-1 chloroplast,... 39 0.93 (A4VXF9) RecName: Full=30S ribosomal protein S18; &(A4W3Q0) Rec... 39 0.93 (A8FJE5) RecName: Full=30S ribosomal protein S18; &CP000813_366... 39 0.93 CP001080_1637(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP... 39 0.93 CP001071_92(CP001071|pid:none) Akkermansia muciniphila ATCC BAA-... 39 0.93 (Q54TW0) RecName: Full=Probable polyketide synthase 18; ... 39 1.2 (Q1IHW4) RecName: Full=30S ribosomal protein S18; &CP000360_453... 39 1.2 R3BS18(S03556)ribosomal protein S18 - Bacillus stearothermophilus 39 1.2 CP000557_3375(CP000557|pid:none) Geobacillus thermodenitrificans... 39 1.2 CP000560_3675(CP000560|pid:none) Bacillus amyloliquefaciens FZB4... 39 1.2 CR761363_1(CR761363|pid:none) Xenopus tropicalis finished cDNA, ... 39 1.2 AX969928_1(AX969928|pid:none) Sequence 731 from Patent EP1104808. 39 1.2 BA000026_225(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c... 39 1.2 (Q73M34) RecName: Full=30S ribosomal protein S18; &AE017226_166... 39 1.2 CP000233_1351(CP000233|pid:none) Lactobacillus salivarius UCC118... 39 1.2 CP001638_3110(CP001638|pid:none) Geobacillus sp. WCH70, complete... 39 1.2 (B5E6A4) RecName: Full=30S ribosomal protein S18; &CP001015_145... 39 1.2 CP000922_2815(CP000922|pid:none) Anoxybacillus flavithermus WK1,... 38 1.6 AP009384_3643(AP009384|pid:none) Azorhizobium caulinodans ORS 57... 38 1.6 CP000468_1337(CP000468|pid:none) Escherichia coli APEC O1, compl... 38 2.1 (Q5HRZ3) RecName: Full=30S ribosomal protein S18; &(Q8CQP6) Rec... 38 2.1 AE014185_298(AE014185|pid:none) Plasmodium falciparum 3D7 chromo... 38 2.1 AL844506_178(AL844506|pid:none) Plasmodium falciparum 3D7 chromo... 38 2.1 (A2RNZ2) RecName: Full=30S ribosomal protein S18; &(Q02VU1) Rec... 38 2.1 CP001358_1999(CP001358|pid:none) Desulfovibrio desulfuricans sub... 38 2.1 CP000740_652(CP000740|pid:none) Sinorhizobium medicae WSM419 pla... 38 2.1 (Q73GZ6) RecName: Full=30S ribosomal protein S18; &AE017196_701... 38 2.1 CP000768_1530(CP000768|pid:none) Campylobacter jejuni subsp. doy... 38 2.1 AM295250_28(AM295250|pid:none) Staphylococcus carnosus subsp. ca... 38 2.1 AE017263_630(AE017263|pid:none) Mesoplasma florum L1 complete ge... 37 2.7 CP001472_1968(CP001472|pid:none) Acidobacterium capsulatum ATCC ... 37 2.7 AM910995_58(AM910995|pid:none) Plasmodium knowlesi strain H chro... 37 2.7 EU621675_1(EU621675|pid:none) Xenopus laevis laryngeal-specific ... 37 3.5 CP001146_1699(CP001146|pid:none) Dictyoglomus thermophilum H-6-1... 37 3.5 (P51256) RecName: Full=30S ribosomal protein S18, chloroplastic;... 37 3.5 CP000267_2686(CP000267|pid:none) Rhodoferax ferrireducens T118, ... 37 3.5 EF432759_1(EF432759|pid:none) Bombyx mori mitochondrial 28S ribo... 37 3.5 CP001277_545(CP001277|pid:none) Candidatus Hamiltonella defensa ... 37 4.6 AE017308_157(AE017308|pid:none) Mycoplasma mobile 163K complete ... 37 4.6 (Q1XDN1) RecName: Full=30S ribosomal protein S18, chloroplastic;... 37 4.6 AP009240_1448(AP009240|pid:none) Escherichia coli SE11 DNA, comp... 37 4.6 AF027728_1(AF027728|pid:none) Xenopus laevis kinesin-related pro... 37 4.6 (A5IPU8) RecName: Full=30S ribosomal protein S18; &(A6QE49) Rec... 37 4.6 BC067305_1(BC067305|pid:none) Xenopus tropicalis myosin heavy ch... 37 4.6 CP000932_565(CP000932|pid:none) Campylobacter lari RM2100, compl... 37 4.6 BC076678_1(BC076678|pid:none) Xenopus tropicalis myosin, heavy p... 37 4.6 (Q6F235) RecName: Full=30S ribosomal protein S18; &AE017263_82(... 36 6.0 (Q1WVN7) RecName: Full=30S ribosomal protein S18; &CP000233_9(C... 36 6.0 CR954246_1208(CR954246|pid:none) Pseudoalteromonas haloplanktis ... 36 6.0 BC041716_1(BC041716|pid:none) Xenopus laevis similar to myosin, ... 36 6.0 CP001357_1368(CP001357|pid:none) Brachyspira hyodysenteriae WA1,... 36 6.0 CP001078_2149(CP001078|pid:none) Clostridium botulinum E3 str. A... 36 6.0 (Q49UQ2) RecName: Full=30S ribosomal protein S18; &AP008934_237... 36 6.0 (Q5FN07) RecName: Full=30S ribosomal protein S18; &CP000033_9(C... 36 6.0 AE017196_413(AE017196|pid:none) Wolbachia endosymbiont of Drosop... 36 6.0 AK168140_1(AK168140|pid:none) Mus musculus CRL-1722 L5178Y-R cDN... 36 6.0 (Q6FXI5) RecName: Full=Kinesin-like protein CIN8; &CR380948_152... 36 6.0 AY603957_7(AY603957|pid:none) Clostsridium pasteurianum nitrogen... 36 6.0 CP001047_350(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ... 36 6.0 (P62659) RecName: Full=30S ribosomal protein S18; &(Q5SLQ0) Rec... 36 6.0 CP001393_233(CP001393|pid:none) Anaerocellum thermophilum DSM 67... 36 6.0 CP000246_1334(CP000246|pid:none) Clostridium perfringens ATCC 13... 36 6.0 AE009951_1736(AE009951|pid:none) Fusobacterium nucleatum subsp. ... 36 6.0 (A8YW49) RecName: Full=30S ribosomal protein S18; &CP000517_9(C... 36 6.0 CP000262_1692(CP000262|pid:none) Streptococcus pyogenes MGAS1075... 36 6.0 (A6Q466) RecName: Full=30S ribosomal protein S18; &AP009178_116... 36 7.9 AY913766_1(AY913766|pid:none) Xenopus laevis ventricular myosin ... 36 7.9 CP000552_835(CP000552|pid:none) Prochlorococcus marinus str. MIT... 36 7.9 AK158884_1(AK158884|pid:none) Mus musculus visual cortex cDNA, R... 36 7.9 AK228029_1(AK228029|pid:none) Arabidopsis thaliana mRNA for pept... 36 7.9 CP001022_2993(CP001022|pid:none) Exiguobacterium sibiricum 255-1... 36 7.9 CP001242_7(CP001242|pid:none) Borrelia afzelii ACA-1 plasmid lp2... 36 7.9 AP007281_1661(AP007281|pid:none) Lactobacillus reuteri JCM 1112 ... 36 7.9 BX548174_847(BX548174|pid:none) Prochlorococcus marinus MED4 com... 36 7.9 AP008971_1139(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA... 36 7.9 AB015468_3(AB015468|pid:none) Arabidopsis thaliana genomic DNA, ... 36 7.9 (B3W6R6) RecName: Full=30S ribosomal protein S18; &(Q03D45) Rec... 36 7.9 CP000939_500(CP000939|pid:none) Clostridium botulinum B1 str. Ok... 36 7.9 BC058507_1(BC058507|pid:none) Rattus norvegicus mitochondrial ri... 36 7.9 AE014188_212(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 36 7.9 (Q2JU22) RecName: Full=30S ribosomal protein S18; &CP000239_156... 36 7.9 AP008955_5922(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 36 7.9
>(Q9WZ74) RecName: Full=30S ribosomal protein S18; &A72355(A72355) &AE000512_596(AE000512|pid:none) Length = 75
Score = 54.7 bits (130), Expect = 2e-05 Identities = 25/66 (37%), Positives = 39/66 (59%) Frame = +1
Query: 2137 KKKNPKCLLCQNPNWQVDPLNTPFLSIYLNKAGDMLPRHFSGNCLKHQKKIVKTIRQAKS 2316 KKK KC LC+ VD +T LS +L G ++P+ +GNC KHQ+ + I++A+ Sbjct: 7 KKKIKKCRLCEMKLDYVDYKDTRLLSEFLTDKGKIIPKRLTGNCSKHQRMVKVAIKRARQ 66
Query: 2317 LGIFSY 2334 +G+ Y Sbjct: 67 MGLLPY 72
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3236559 Number of Hits to DB: 3,871,053,288 Number of extensions: 75556338 Number of successful extensions: 200599 Number of sequences better than 10.0: 178 Number of HSP's gapped: 200388 Number of HSP's successfully gapped: 183 Length of query: 840 Length of database: 1,051,180,864 Length adjustment: 137 Effective length of query: 703 Effective length of database: 607,772,281 Effective search space: 427263913543 Effective search space used: 427263913543 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)
|
PSORT |
|
VS (DIR, S) |
1 |
VH (FL, L) |
2 |
VF (FL, S) |
1 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
1 |
CH (FL, L) |
2 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
1 |
FC-IC (SUB) |
0 |