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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15346-1
Contig ID Contig-U15346-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15346-1 (Contig-U15346-1Q) /CSM_Contig/Contig-U15346-1Q.Seq.d
ACTGTTGGCCTACTGGNGCAACAACAGCAACAACAACAACAGCAACAACA
ACATCAATAAAAGTTGAACCAAAAAAGAAATCAACATCATTATGGTCATT
TAAAACATACCTTTATGATGAAATTCATGGTGGATATTTATCAAATGAAG
CAAATGATACATTAAAGAGAGAACAAGTTTATAATTTTGTTCATGTGCCA
TGGGAACTTGAAAAATTAATTTCATTTGGGTTTTTGGTTTGTTTCGATTC
ATTTTTATTTTTATTTACATTTTTACCAATCCGATTCTTTTTATCATTTT
TAAAATTTTTAATTTCACCTTTTTCTAAAAAAAATAAATTAACAACCAAT
CAAATATTTGATTTATTTAGAGGATTTATTTGGGTAACATGTTTTGTATT
TTTAAATTTTATTGATTCATCAATGCTTTATCATTATATTAGAGGTCAAG
CAGTCATTAAACTATACGTGATATACAATGTCTTGGAGGTATTGGATAAA
CTATGTTGTAGTTTTGGTCAAGATATTTTTGATTCTCTATATTGGGATGT
CATTCAGTCTTACAAGTTCAAATAGAAATAGACAGGATGGGTTAGTACCA
AAACAAAGGAATGAAACTAGAATTTTAGGTCCATTCACTCATCTTTTGGT
TGCAACAGGATATGTTTGTTTACATTCATTAGTATTATTTTCACAGGTTA
TTACATTAAATGTTGCAATTAATTCATATAATAATGCATTGTTAACATTG
ATGATATCAAATCAATTTTGTTGAATTAAAAGGATCAGTATTTAAAAGAT
TTGAAAAGGAGAATTTATTTCAAATTTCATGTAGTGATATTGTAGAGAGA
TTCCAAGCATTTATTTTCCTTACAATTATTATTTTTCAAAACCTTTCAGA
TTTAAATTGGGATTTATCTTGGGATTTTGCAATTAATATGTTAACAGTGG
TTGGTACTGTTTGGGGTTCTGAAGTTTTAGTTGATGCGATCAAACATGCT
TTTATCACTAAATTCAATAAATTCTCACCTCAAATGTATTCAAAATTCTT
TGTACTCTTATCCGATACAATAGTTGACCCAAGGAATAGAAATTTCACTG
AAAGTTCATGGGGTGTAAATAATATAATTGGTTTTGTACCATTTCCATTA
GCTTCAATTGTTGTAAGAGTATTTCATAAATTCATTCCATCAAAAGGTAT
TTTTGGTATATTTTTAATGGTTCAAATTTATATATGTCTTGTACTTTTAA
AAATATTTATAAAAATCATTATCCTCGGTCAATGTTTATCAAAAACCACC
AATTATGATAACACAACAACAACTATTTTATCATCATCATCATCTTCATC
ATCATCAAATTCATTAAATACCACTTCAACAACATCAACCTCAACTTCAA
CAACAAAAGATAAAAAAAACAATAAAAAGAAAAAAAAAAATTAAAAATAA
AAAAAACGGAAAAGGAGGCATCCNTTTTTTTTTT
Gap no gap
Contig length 1484
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 7639194
End point 7637729
Strand (PLUS/MINUS) MINUS
Number of clones 9
Number of EST 9
Link to clone list U15346
List of clone(s) 

est1=AFA251E,1,1422
est2=CHI232Z,647,1422
est3=CHL590Z,648,1423
est4=CHL245Z,669,1427
est5=VHL639Z,669,1407
est6=VHK326Z,733,1421
est7=CHP750Z,779,1383
est8=CHP378Z,958,1484
est9=CHN218Z,1243,1475
Translated Amino Acid sequence 
llaywxnnsnnnnsnnninks*tkkeiniimvi*nipl**nswwifik*sk*yikertsl
*fcscamgt*kinfiwvfglfrfififiyiftnpilfiifkifnftff*kk*innqsni*
fi*riylgnmfcifkfy*finalsly*rsssh*tirdiqclggig*tml*fwsryf*fsi
lgchsvlqvqieidrmg*yqnkgmklef*vhslifwlqqdmfvyih*yyfhrllh*mlql
ihiimhc*h**YQINFVELKGSVFKRFEKENLFQISCSDIVERFQAFIFLTIIIFQNLSD
LNWDLSWDFAINMLTVVGTVWGSEVLVDAIKHAFITKFNKFSPQMYSKFFVLLSDTIVDP
RNRNFTESSWGVNNIIGFVPFPLASIVVRVFHKFIPSKGIFGIFLMVQIYICLVLLKIFI
KIIILGQCLSKTTNYDNTTTTILSSSSSSSSSNSLNTTSTTSTSTSTTKDKKNNKKKKKN
*k*kkrkrrhpfff
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxqqqqqqqqqqqhq*klnqkrnqhhyghlkhtfmmkfmvdiyqmkqmih*renkf
iilfmchgnlkn*fhlgfwfvsihfyfylhfyqsdsfyhf*nf*fhlflkkin*qpikyl
iyledlfg*hvlyf*illihqcfiiilevkqslnyt*ytmswrywinyvvvlvkiflily
igmsfsltssnrnrqdglvpkqrnetrilgpfthllvatgyvclhslvlfsqvitlnvai
nsynnalltlmisnqfc*ikrisi*ki*kgefisnfm**ycreipsiyfpynyyfskpfr
fklgfilgfcn*yvnsgwyclgf*sfs*cdqtcfyh*iq*iltsnvfkilctliryns*p
ke*kfh*kfmgck*ynwfctisisfnccksis*ihsikryfwyifngsnlymsctfkniy
knhyprsmfiknhql**hnnnyfiiiiifiiikfikyhfnninlnfnnkr*kkq*kekkk
lkikktekeasxff


Frame B:
llaywxnnsnnnnsnnninks*tkkeiniimvi*nipl**nswwifik*sk*yikertsl
*fcscamgt*kinfiwvfglfrfififiyiftnpilfiifkifnftff*kk*innqsni*
fi*riylgnmfcifkfy*finalsly*rsssh*tirdiqclggig*tml*fwsryf*fsi
lgchsvlqvqieidrmg*yqnkgmklef*vhslifwlqqdmfvyih*yyfhrllh*mlql
ihiimhc*h**YQINFVELKGSVFKRFEKENLFQISCSDIVERFQAFIFLTIIIFQNLSD
LNWDLSWDFAINMLTVVGTVWGSEVLVDAIKHAFITKFNKFSPQMYSKFFVLLSDTIVDP
RNRNFTESSWGVNNIIGFVPFPLASIVVRVFHKFIPSKGIFGIFLMVQIYICLVLLKIFI
KIIILGQCLSKTTNYDNTTTTILSSSSSSSSSNSLNTTSTTSTSTSTTKDKKNNKKKKKN
*k*kkrkrrhpfff


Frame C:
cwptgattattttatttsikvepkkkstslwsfktylydeihggylsneandtlkreqvy
nfvhvpweleklisfgflvcfdsflflftflpirfflsflkflispfskknklttnqifd
lfrgfiwvtcfvflnfidssmlyhyirgqaviklyviynvlevldklccsfgqdifdsly
wdviqsykfk*k*tgwvstktke*n*nfrsihssfgcnriclftfisiiftgyyikccn*
fi**civniddiksilln*kdqylkdlkrriyfkfhvvil*rdskhlfslqllffktfqi
*igiylgilqlic*qwlvlfgvlkf*lmrsnmllslnsinshlkciqnslysypiq*ltq
gieislkvhgv*ii*lvlyhfh*lqll*eyfinsfhqkvflvyf*wfkfiyvlyf*kyl*
kslssvnvyqkppimitqqqlfyhhhhlhhhqih*iplqqhqpqlqqqkikktikrkkki
knkkngkggixfff
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15346-1 (Contig-U15346-1Q)
/CSM_Contig/Contig-U15346-1Q.Seq.d
         (1484 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15346-1 (Contig-U15346-1Q) /CSM_Contig/Conti...  1972  0.0
Contig-U13305-1 (Contig-U13305-1Q) /CSM_Contig/Conti...   496  e-140
Contig-U12950-1 (Contig-U12950-1Q) /CSM_Contig/Conti...   168  2e-41
Contig-U11786-1 (Contig-U11786-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U08610-1 (Contig-U08610-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U15235-1 (Contig-U15235-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U10756-1 (Contig-U10756-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U09903-1 (Contig-U09903-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U09209-1 (Contig-U09209-1Q) /CSM_Contig/Conti...    40  0.010
Contig-U16379-1 (Contig-U16379-1Q) /CSM_Contig/Conti...    38  0.038

>Contig-U15346-1 (Contig-U15346-1Q) /CSM_Contig/Contig-U15346-1Q.Seq.d
          Length = 1484

 Score = 1972 bits (995), Expect = 0.0
 Identities = 995/995 (100%)
 Strand = Plus / Plus

                                                                        
Query: 335  taaattaacaaccaatcaaatatttgatttatttagaggatttatttgggtaacatgttt 394
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335  taaattaacaaccaatcaaatatttgatttatttagaggatttatttgggtaacatgttt 394

                                                                        
Query: 395  tgtatttttaaattttattgattcatcaatgctttatcattatattagaggtcaagcagt 454
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395  tgtatttttaaattttattgattcatcaatgctttatcattatattagaggtcaagcagt 454

                                                                        
Query: 455  cattaaactatacgtgatatacaatgtcttggaggtattggataaactatgttgtagttt 514
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455  cattaaactatacgtgatatacaatgtcttggaggtattggataaactatgttgtagttt 514

                                                                        
Query: 515  tggtcaagatatttttgattctctatattgggatgtcattcagtcttacaagttcaaata 574
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515  tggtcaagatatttttgattctctatattgggatgtcattcagtcttacaagttcaaata 574

                                                                        
Query: 575  gaaatagacaggatgggttagtaccaaaacaaaggaatgaaactagaattttaggtccat 634
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575  gaaatagacaggatgggttagtaccaaaacaaaggaatgaaactagaattttaggtccat 634

                                                                        
Query: 635  tcactcatcttttggttgcaacaggatatgtttgtttacattcattagtattattttcac 694
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635  tcactcatcttttggttgcaacaggatatgtttgtttacattcattagtattattttcac 694

                                                                        
Query: 695  aggttattacattaaatgttgcaattaattcatataataatgcattgttaacattgatga 754
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695  aggttattacattaaatgttgcaattaattcatataataatgcattgttaacattgatga 754

                                                                        
Query: 755  tatcaaatcaattttgttgaattaaaaggatcagtatttaaaagatttgaaaaggagaat 814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755  tatcaaatcaattttgttgaattaaaaggatcagtatttaaaagatttgaaaaggagaat 814

                                                                        
Query: 815  ttatttcaaatttcatgtagtgatattgtagagagattccaagcatttattttccttaca 874
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815  ttatttcaaatttcatgtagtgatattgtagagagattccaagcatttattttccttaca 874

                                                                        
Query: 875  attattatttttcaaaacctttcagatttaaattgggatttatcttgggattttgcaatt 934
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875  attattatttttcaaaacctttcagatttaaattgggatttatcttgggattttgcaatt 934

                                                                        
Query: 935  aatatgttaacagtggttggtactgtttggggttctgaagttttagttgatgcgatcaaa 994
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935  aatatgttaacagtggttggtactgtttggggttctgaagttttagttgatgcgatcaaa 994

                                                                        
Query: 995  catgcttttatcactaaattcaataaattctcacctcaaatgtattcaaaattctttgta 1054
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995  catgcttttatcactaaattcaataaattctcacctcaaatgtattcaaaattctttgta 1054

                                                                        
Query: 1055 ctcttatccgatacaatagttgacccaaggaatagaaatttcactgaaagttcatggggt 1114
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1055 ctcttatccgatacaatagttgacccaaggaatagaaatttcactgaaagttcatggggt 1114

                                                                        
Query: 1115 gtaaataatataattggttttgtaccatttccattagcttcaattgttgtaagagtattt 1174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1115 gtaaataatataattggttttgtaccatttccattagcttcaattgttgtaagagtattt 1174

                                                                        
Query: 1175 cataaattcattccatcaaaaggtatttttggtatatttttaatggttcaaatttatata 1234
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1175 cataaattcattccatcaaaaggtatttttggtatatttttaatggttcaaatttatata 1234

                                                                        
Query: 1235 tgtcttgtacttttaaaaatatttataaaaatcattatcctcggtcaatgtttatcaaaa 1294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1235 tgtcttgtacttttaaaaatatttataaaaatcattatcctcggtcaatgtttatcaaaa 1294

                                               
Query: 1295 accaccaattatgataacacaacaacaactatttt 1329
            |||||||||||||||||||||||||||||||||||
Sbjct: 1295 accaccaattatgataacacaacaacaactatttt 1329


 Score =  339 bits (171), Expect = 7e-93
 Identities = 171/171 (100%)
 Strand = Plus / Plus

                                                                       
Query: 54  tcaataaaagttgaaccaaaaaagaaatcaacatcattatggtcatttaaaacatacctt 113
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54  tcaataaaagttgaaccaaaaaagaaatcaacatcattatggtcatttaaaacatacctt 113

                                                                       
Query: 114 tatgatgaaattcatggtggatatttatcaaatgaagcaaatgatacattaaagagagaa 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 tatgatgaaattcatggtggatatttatcaaatgaagcaaatgatacattaaagagagaa 173

                                                              
Query: 174 caagtttataattttgttcatgtgccatgggaacttgaaaaattaatttca 224
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 caagtttataattttgttcatgtgccatgggaacttgaaaaattaatttca 224


 Score = 93.7 bits (47), Expect = 7e-19
 Identities = 47/47 (100%)
 Strand = Plus / Plus

                                                           
Query: 1358 aattcattaaataccacttcaacaacatcaacctcaacttcaacaac 1404
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1358 aattcattaaataccacttcaacaacatcaacctcaacttcaacaac 1404


 Score = 34.2 bits (17), Expect = 0.59
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 1457 cggaaaaggaggcatcc 1473
            |||||||||||||||||
Sbjct: 1457 cggaaaaggaggcatcc 1473


 Score = 32.2 bits (16), Expect = 2.3
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 348 aatcaaatatttgatt 363
           ||||||||||||||||
Sbjct: 363 aatcaaatatttgatt 348


 Score = 32.2 bits (16), Expect = 2.3
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                          
Query: 1  actgttggcctactgg 16
          ||||||||||||||||
Sbjct: 1  actgttggcctactgg 16


>Contig-U13305-1 (Contig-U13305-1Q) /CSM_Contig/Contig-U13305-1Q.Seq.d
          Length = 605

 Score =  496 bits (250), Expect = e-140
 Identities = 387/452 (85%)
 Strand = Plus / Plus

                                                                        
Query: 878  attatttttcaaaacctttcagatttaaattgggatttatcttgggattttgcaattaat 937
            ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| 
Sbjct: 11   attatttttcaaaacctttcanatttaaantgggatttatcttgggattttgcaattaan 70

                                                                        
Query: 938  atgttaacagtggttggtactgtttggggttctgaagttttagttgatgcgatcaaacat 997
            ||||||||| ||||||| ||||||||||||| |||| |||||||||| ||||||||||| 
Sbjct: 71   atgttaacantggttggnactgtttggggttttgaanttttagttgangcgatcaaacan 130

                                                                        
Query: 998  gcttttatcactaaattcaataaattctcacctcaaatgtattcaaaattctttgtactc 1057
            | ||||||| |||||||||| ||||| || || |||| | |||||||||| |||| ||| 
Sbjct: 131  gnttttatcnctaaattcaanaaattttccccncaaangnattcaaaattntttgnactt 190

                                                                        
Query: 1058 ttatccgatacaatagttgacccaaggaatagaaatttcactgaaagttcatggggtgta 1117
            |||||||| |||| || |||||||| ||| | ||||||| ||||||||||| |||| | |
Sbjct: 191  ttatccganacaanagntgacccaangaananaaatttcnctgaaagttcanggggngna 250

                                                                        
Query: 1118 aataatataattggttttgtaccatttccattagcttcaattgttgtaagagtatttcat 1177
            || || | || ||| |||| ||| ||||| |||  |||||||||||||| ||||||| | 
Sbjct: 251  aanaananaantggntttggaccntttccnttannttcaattgttgtaanagtatttnan 310

                                                                        
Query: 1178 aaattcattccatcaaaaggtatttttggtatatttttaatggttcaaatttatatatgt 1237
            |||||| |||| |||||| | |||||||| | |||||||| || ||||| ||| | | ||
Sbjct: 311  aaattcnttccntcaaaangnatttttggnanatttttaanggntcaaanttananangt 370

                                                                        
Query: 1238 cttgtacttttaaaaatatttataaaaatcattatcctcggtcaatgtttatcaaaaacc 1297
             ||| ||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 371  nttgnacttttaaaaanatttataaaaatcnttatcctcggncaatgtttatcaaaaacc 430

                                            
Query: 1298 accaattatgataacacaacaacaactatttt 1329
             || ||||||||||| | || |||||||||||
Sbjct: 431  cccnattatgataacccnacnacaactatttt 462


 Score = 73.8 bits (37), Expect = 7e-13
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                           
Query: 1358 aattcattaaataccacttcaacaacatcaacctcaacttcaacaac 1404
            ||||||||||| ||| ||||||||||||||||| |||||||||||||
Sbjct: 491  aattcattaaanaccccttcaacaacatcaaccncaacttcaacaac 537


>Contig-U12950-1 (Contig-U12950-1Q) /CSM_Contig/Contig-U12950-1Q.Seq.d
          Length = 320

 Score =  168 bits (85), Expect = 2e-41
 Identities = 90/92 (97%)
 Strand = Plus / Plus

                                                                       
Query: 54  tcaataaaagttgaaccaaaaaagaaatcaacatcattatggtcatttaaaacatacctt 113
           |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 18  tcaataaaagttganccaaaaaagaaatcaacatcattatggtcatttaagacatacctt 77

                                           
Query: 114 tatgatgaaattcatggtggatatttatcaaa 145
           ||||||||||||||||||||||||||||||||
Sbjct: 78  tatgatgaaattcatggtggatatttatcaaa 109


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 43,437
Number of Sequences: 8402
Number of extensions: 43437
Number of successful extensions: 4952
Number of sequences better than 10.0: 1006
length of query: 1484
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1468
effective length of database: 7,941,110
effective search space: 11657549480
effective search space used: 11657549480
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.24
Homology vs DNA 
Query= Contig-U15346-1 (Contig-U15346-1Q) /CSM_Contig/Contig-U15346-1Q.Seq.d
         (1484 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ382318) Dictyostelium discoideum cDNA clone:ddc44i12, 3' ...  1310   0.0    1
(BJ442891) Dictyostelium discoideum cDNA clone:ddv51d07, 3' ...  1116   0.0    2
(BJ382753) Dictyostelium discoideum cDNA clone:ddc45c23, 3' ...  1116   0.0    2
(BJ443873) Dictyostelium discoideum cDNA clone:ddv54m10, 3' ...  1108   0.0    2
(BJ380521) Dictyostelium discoideum cDNA clone:ddc38o08, 3' ...  1108   0.0    2
(BJ342777) Dictyostelium discoideum cDNA clone:dda1e14, 3' e...  1068   0.0    2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...   783   0.0    7
(BJ383581) Dictyostelium discoideum cDNA clone:ddc53d13, 3' ...   902   0.0    2
(BJ325592) Dictyostelium discoideum cDNA clone:dda1e14, 5' e...   327   e-180  4
(BJ408684) Dictyostelium discoideum cDNA clone:dds46j13, 3' ...   496   e-135  1
(BJ383402) Dictyostelium discoideum cDNA clone:ddc52l19, 3' ...   414   e-111  1
(BJ429426) Dictyostelium discoideum cDNA clone:ddv3n12, 3' e...   168   4e-37  1
(BJ384037) Dictyostelium discoideum cDNA clone:ddc48c06, 3' ...   147   1e-30  1
(BJ376828) Dictyostelium discoideum cDNA clone:ddc30i02, 3' ...    74   2e-08  1
(FC820031) Sr_pAMT7_016i07_T7 S. ratti mixed stage pAMP Stro...    64   6e-07  2
(CD197275) MS1-0095G-V318-B06-U.B MS1-0095 Schistosoma manso...    42   2e-04  2
(AC198294) MACACA MULATTA BAC clone CH250-491I20 from chromo...    52   0.061  1
(CT030165) M.truncatula DNA sequence from clone MTH2-150K22 ...    34   0.16   7
(AC162792) Mus musculus chromosome 7, clone RP24-187H10, com...    44   0.20   6
(AX811312) Sequence 1 from Patent WO03062469.                      50   0.24   1
(AP001876) Homo sapiens genomic DNA, chromosome 11 clone:CTD...    50   0.24   1
(AC079145) Homo sapiens BAC clone RP11-42N12 from 2, complet...    50   0.24   1
(AC007434) Homo sapiens, clone RP11-17A8, complete sequence.       50   0.24   1
(AC127534) Homo sapiens chromosome 17 clone CTD-2517E17 map ...    50   0.24   1
(AC021877) Homo sapiens chromosome 2 clone RP11-17L8, WORKIN...    50   0.24   1
(AC021174) Homo sapiens chromosome 11 clone RP11-683D16, WOR...    50   0.24   1
(AQ314110) RPCI11-102J21.TJ RPCI-11 Homo sapiens genomic clo...    50   0.24   1
(AM285303) Spiroplasma citri GII3-3X chromosome, contig Cont...    34   0.31   9
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    40   0.35   11
(BJ396625) Dictyostelium discoideum cDNA clone:dds43i07, 5' ...    32   0.40   3
(BJ418618) Dictyostelium discoideum cDNA clone:ddv33m12, 5' ...    32   0.42   4
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    32   0.45   22
(AF083031) Guillardia theta nucleomorph chromosome 3, comple...    38   0.48   12
(AC055705) Mus musculus strain C57BL6/J clone RP23-17H14, **...    34   0.51   2
(CT030740) Mouse DNA sequence from clone RP24-312D7 on chrom...    34   0.52   2
(AM435745) Vitis vinifera contig VV78X267253.5, whole genome...    36   0.56   3
(AK041283) Mus musculus adult male aorta and vein cDNA, RIKE...    34   0.65   2
(G94219) S208P6054RC11.T0 129S1/SvImJ Mus musculus STS genom...    34   0.69   2
(DX993787) CHORI103-15L24.TV.1 CHORI103 Schistosoma mansoni ...    34   0.69   2
(BB355790) Mus musculus adult male corpus striatum cDNA, RIK...    34   0.71   2
(AV382239) Mus musculus adult male diencephalon cDNA, RIKEN ...    34   0.72   2
(AC122280) Mus musculus BAC clone RP23-239I12 from 17, compl...    38   0.74   6
(AC132470) Mus musculus BAC clone RP23-96F5 from chromosome ...    38   0.78   8
(AC111128) Mus musculus chromosome 18, clone RP23-338I7, com...    38   0.85   8
(CJ492460) Macaca fascicularis mRNA, clone: QtsA-20440, 5' e...    38   0.92   3
(AC212662) Pongo abelii BAC clone CH276-160P8 from chromosom...    48   0.95   1
(AC210624) Pongo abelii BAC clone CH276-279C6 from chromosom...    48   0.95   1
(AC197161) Pan troglodytes BAC clone CH251-174O3 from chromo...    48   0.95   1
(AC188672) Pan troglodytes BAC clone CH251-322P18 from chrom...    48   0.95   1
(AC188596) Pan troglodytes BAC clone CH251-546A21 from chrom...    48   0.95   1
(AM462080) Vitis vinifera contig VV78X268603.9, whole genome...    48   0.95   1
(AL354810) Human DNA sequence from clone RP11-527N12 on chro...    48   0.95   1
(AC208148) Homo sapiens FOSMID clone ABC9-43347900G16 from c...    48   0.95   1
(AC141688) Apis mellifera clone CH224-55I10, WORKING DRAFT S...    48   0.95   1
(AC053537) Homo sapiens chromosome 13 clone RP11-753O16, WOR...    48   0.95   1
(AP010199) Lotus japonicus genomic DNA, chromosome 5, clone:...    48   0.95   1
(AL596328) Human DNA sequence *** SEQUENCING CANCELLED *** f...    48   0.95   1
(AC224646) Bos taurus clone CH240-479P8, WORKING DRAFT SEQUE...    48   0.95   1
(CX577357) TTE00028293 Amplicon Express - Conjugative Form T...    42   1.1    2
(AC090312) Homo sapiens chromosome 18, clone RP11-752P2, com...    34   1.2    9
(AC146332) Medicago truncatula clone mth2-7l17, complete seq...    36   1.3    6
(AZ534515) ENTBT01TF Entamoeba histolytica Sheared DNA Entam...    46   1.4    2
(AC002385) Homo sapiens BAC clone CTA-222A16 from 7, complet...    34   1.4    10
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         32   1.6    22
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    34   1.7    12
(AC000118) Homo sapiens BAC clone CTB-72E11 from 7, complete...    38   1.9    6
(AC106742) Homo sapiens chromosome 16 clone RP11-1136G4, com...    36   1.9    2
(CU638692) Zebrafish DNA sequence from clone CH211-174J2 in ...    36   1.9    2
(AC108084) Homo sapiens chromosome 16 clone CTD-2013N18, com...    36   1.9    2
(CU929261) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   2.0    2
(CR315714) mte1-4E8RM1 BAC end, cultivar Jemalong A17 of Med...    36   2.6    2
(AC209100) Populus trichocarpa clone POP042-C19, complete se...    38   2.7    6
(AC160012) Medicago truncatula chromosome 2 clone mth2-168l8...    38   3.0    8
(BX927349) Zebrafish DNA sequence from clone DKEY-84K15 in l...    38   3.1    7
(AC117606) Mus musculus chromosome 3, clone RP23-78O15, comp...    34   3.1    9
(AC173114) Mus musculus BAC clone RP23-25G5 from chromosome ...    34   3.2    9
(AC101696) Mus musculus chromosome 1, clone RP23-238M18, com...    36   3.3    7
(CU179680) Mycoplasma agalactiae PG2 chromosome, complete se...    34   3.5    18
(AC156249) Xenopus (Silurana) tropicalis clone ISB1-238C22, ...    46   3.8    1
(AC151293) Mus musculus BAC clone RP23-128F3 from chromosome...    46   3.8    1
(AC006582) Pan troglodytes 12cp12 BAC RPCI43-77C18 (Roswell ...    46   3.8    1
(CR855068) Oryza sativa genomic DNA, chromosome 4, BAC clone...    46   3.8    1
(CR855066) Oryza sativa genomic DNA, chromosome 4, BAC clone...    46   3.8    1
(CR382136) Debaryomyces hansenii strain CBS767 chromosome A ...    46   3.8    1
(AP008210) Oryza sativa (japonica cultivar-group) genomic DN...    46   3.8    1
(AM478625) Vitis vinifera contig VV78X235875.2, whole genome...    46   3.8    1
(AM441011) Vitis vinifera contig VV78X134983.5, whole genome...    46   3.8    1
(AM434911) Vitis vinifera contig VV78X207346.7, whole genome...    46   3.8    1
(AL663007) Oryza sativa genomic DNA, chromosome 4, BAC clone...    46   3.8    1
(EA704028) Sequence 82907 from patent US 7365185.                  46   3.8    1
(AX345191) Sequence 262 from Patent WO0200928.                     46   3.8    1
(AL356789) Human DNA sequence from clone RP5-1076L12 on chro...    46   3.8    1
(AL355863) Human DNA sequence from clone RP11-479A21 on chro...    46   3.8    1
(AC023163) Homo sapiens 12 BAC RP11-239B4 (Roswell Park Canc...    46   3.8    1
(AC022325) Homo sapiens BAC clone RP11-391J13 from 4, comple...    46   3.8    1
(AC005294) Homo sapiens 12 BAC GSHB-410F4 (Genome Systems Hu...    46   3.8    1
(AC159769) Bos taurus clone CH240-78O23, WORKING DRAFT SEQUE...    46   3.8    1
(AC131974) Mus musculus chromosome 17 clone RP23-243P19 map ...    46   3.8    1
(AC073923) Homo sapiens chromosome 1 clone RP11-147F14 map 1...    46   3.8    1
(AL606524) Human DNA sequence *** SEQUENCING CANCELLED *** f...    46   3.8    1
(AC024674) Homo sapiens chromosome 4 clone RP11-613O13 map 4...    46   3.8    1
(BH462469) BOGCZ48TR BOGC Brassica oleracea genomic clone BO...    46   3.8    1
(AY420103) Pan troglodytes HCM7112 gene, VIRTUAL TRANSCRIPT,...    46   3.8    1
(FI329916) FI_chr4_14182655_14183261_rev_Rayada_B O. sativa ...    46   3.8    1
(FI329828) FI_chr4_14182655_14183261_fwd_Rayada_B O. sativa ...    46   3.8    1
(FI324319) FI_chr4_14182655_14183261_rev_FR_13_A O. sativa F...    46   3.8    1
(FI324247) FI_chr4_14182655_14183261_fwd_FR_13_A O. sativa F...    46   3.8    1
(EK468777) 1095469438417 Global-Ocean-Sampling_GS-32-01-01-1...    46   3.8    1
(AQ033846) HS_2194_B2_F07_MR CIT Approved Human Genomic Sper...    46   3.8    1
(AM618569) Entamoeba invadens IP1 GSS, clone inv113a10.q1k.        46   3.8    1
(EI252785) OR__Ba0055H05.f OR__Ba Oryza rufipogon genomic cl...    46   3.8    1
(DU293528) 1098421221529 CHORI-243 Ovis aries genomic clone ...    46   3.8    1
(DE348126) Bombyx mori genomic DNA, BAC clone:BET_056_M15.         46   3.8    1
(CT503868) A BAC library has been constructed from cultivar ...    46   3.8    1
(CE294456) tigr-gss-dog-17000333890242 Dog Library Canis lup...    46   3.8    1
(CK552223) rswla0_005292.y1 swl Bombyx mori cDNA, mRNA seque...    46   3.8    1
(CF358373) rm89g05.y1 Meloidogyne arenaria J2 SMART pGEM Mel...    46   3.8    1
(CF357853) rm96e01.y1 Meloidogyne arenaria J2 SMART pGEM Mel...    46   3.8    1
(CF357779) rm95e09.y1 Meloidogyne arenaria J2 SMART pGEM Mel...    46   3.8    1
(CF357602) rm93d03.y1 Meloidogyne arenaria J2 SMART pGEM Mel...    46   3.8    1
(CF357458) rm85e10.y1 Meloidogyne arenaria J2 SMART pGEM Mel...    46   3.8    1
(CF357398) rm84g12.y1 Meloidogyne arenaria J2 SMART pGEM Mel...    46   3.8    1
(CF357233) rm82h10.y1 Meloidogyne arenaria J2 SMART pGEM Mel...    46   3.8    1
(CF357178) rm82c12.y1 Meloidogyne arenaria J2 SMART pGEM Mel...    46   3.8    1
(CF357108) rm81e08.y1 Meloidogyne arenaria J2 SMART pGEM Mel...    46   3.8    1
(CF357065) rm81a05.y1 Meloidogyne arenaria J2 SMART pGEM Mel...    46   3.8    1
(BX114159) RZPD Homo sapiens cDNA clone IMAGp998P095287 = IM...    46   3.8    1
(BI746440) rm27b05.y1 Meloidogyne arenaria egg pAMP1 v1 Chia...    46   3.8    1
(AC181553) Strongylocentrotus purpuratus clone R3-7G5, WORKI...    40   3.8    9
(EL606972) nbk23b02.p1 Mouse retina. Y2H (nbk) Mus musculus ...    42   4.0    2
(AC216837) Populus trichocarpa clone POP023-C23, complete se...    42   4.1    4
(BX004846) Zebrafish DNA sequence from clone CH211-172H20 in...    32   4.2    7
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699...    36   4.3    19
(FH212749) CHO_OF3368xc02r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   4.6    2
(AM441786) Vitis vinifera contig VV78X193154.3, whole genome...    44   4.7    2
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    32   4.9    12
(BX294386) Zebrafish DNA sequence from clone CH211-207B9 in ...    40   5.0    4
(CU467659) Mouse DNA sequence from clone CH29-511G10 on chro...    40   5.3    3
(AC140185) Mus musculus BAC clone RP24-363A3 from chromosome...    34   5.5    6
(CR735121) Zebrafish DNA sequence from clone DKEY-42H23 in l...    36   6.1    7
(AC105786) Rattus norvegicus clone CH230-251J23, *** SEQUENC...    42   6.2    7
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...    34   6.4    9
(AC161696) Bos taurus clone CH240-108N11, WORKING DRAFT SEQU...    34   6.9    2
(AC184799) Pan troglodytes BAC clone CH251-623C19 from chrom...    32   6.9    2
(AC148313) Pan troglodytes BAC clone CH251-565C10 from chrom...    32   6.9    2
(AC183835) Pan troglodytes BAC clone CH251-114G16 from chrom...    32   6.9    2
(AC198711) Pan troglodytes chromosome 7 clone CH251-322B2, W...    32   6.9    2
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9...    38   6.9    11
(AC174000) Pan troglodytes BAC clone CH251-2O15 from chromos...    32   7.0    2
(CU469491) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    32   7.0    2
(AC185242) Pan troglodytes BAC clone CH251-340I24 from chrom...    32   7.0    2
(CR854913) Zebrafish DNA sequence from clone DKEY-18P14 in l...    32   7.2    2
(AC155830) Mus musculus 10 BAC RP24-495I3 (Roswell Park Canc...    38   7.8    5
(BK001429) TPA_exp: Homo sapiens NOELIN3 (OLFM3) gene, compl...    34   8.3    12
(AM428833) Vitis vinifera contig VV78X040611.4, whole genome...    32   8.4    7
(AZ553940) RPCI-23-174P9.TV RPCI-23 Mus musculus genomic clo...    34   8.5    2
(BX005244) Mouse DNA sequence from clone RP23-134F14 on chro...    34   8.9    7
(AC102510) Mus musculus chromosome 5, clone RP24-346C14, com...    36   9.1    8
(EJ838957) 1093017817915 Global-Ocean-Sampling_GS-30-02-01-1...    32   9.3    2
(EK346053) 1095467523099 Global-Ocean-Sampling_GS-31-01-01-1...    32   9.3    2
(EJ929342) 1093018797699 Global-Ocean-Sampling_GS-30-02-01-1...    32   9.3    2
(EJ563617) 1092959685740 Global-Ocean-Sampling_GS-29-01-01-1...    32   9.4    2
(EJ943093) 1093018897657 Global-Ocean-Sampling_GS-30-02-01-1...    32   9.5    2
(AC156206) Bos taurus clone CH240-39N6, WORKING DRAFT SEQUEN...    36   9.6    6
(AM434002) Vitis vinifera contig VV78X090900.7, whole genome...    44   9.7    3
(AL593850) Mouse DNA sequence from clone RP23-436B15 on chro...    38   9.8    6
(AM456406) Vitis vinifera contig VV78X123230.3, whole genome...    44   9.8    2

>(BJ382318) Dictyostelium discoideum cDNA clone:ddc44i12, 3' end,
            single read.
          Length = 759

 Score = 1310 bits (661), Expect = 0.0
 Identities = 661/661 (100%)
 Strand = Plus / Minus


Query: 669  tttacattcattagtattattttcacaggttattacattaaatgttgcaattaattcata 728
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759  tttacattcattagtattattttcacaggttattacattaaatgttgcaattaattcata 700


Query: 729  taataatgcattgttaacattgatgatatcaaatcaattttgttgaattaaaaggatcag 788
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699  taataatgcattgttaacattgatgatatcaaatcaattttgttgaattaaaaggatcag 640


Query: 789  tatttaaaagatttgaaaaggagaatttatttcaaatttcatgtagtgatattgtagaga 848
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639  tatttaaaagatttgaaaaggagaatttatttcaaatttcatgtagtgatattgtagaga 580


Query: 849  gattccaagcatttattttccttacaattattatttttcaaaacctttcagatttaaatt 908
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579  gattccaagcatttattttccttacaattattatttttcaaaacctttcagatttaaatt 520


Query: 909  gggatttatcttgggattttgcaattaatatgttaacagtggttggtactgtttggggtt 968
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519  gggatttatcttgggattttgcaattaatatgttaacagtggttggtactgtttggggtt 460


Query: 969  ctgaagttttagttgatgcgatcaaacatgcttttatcactaaattcaataaattctcac 1028
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459  ctgaagttttagttgatgcgatcaaacatgcttttatcactaaattcaataaattctcac 400


Query: 1029 ctcaaatgtattcaaaattctttgtactcttatccgatacaatagttgacccaaggaata 1088
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399  ctcaaatgtattcaaaattctttgtactcttatccgatacaatagttgacccaaggaata 340


Query: 1089 gaaatttcactgaaagttcatggggtgtaaataatataattggttttgtaccatttccat 1148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339  gaaatttcactgaaagttcatggggtgtaaataatataattggttttgtaccatttccat 280


Query: 1149 tagcttcaattgttgtaagagtatttcataaattcattccatcaaaaggtatttttggta 1208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279  tagcttcaattgttgtaagagtatttcataaattcattccatcaaaaggtatttttggta 220


Query: 1209 tatttttaatggttcaaatttatatatgtcttgtacttttaaaaatatttataaaaatca 1268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219  tatttttaatggttcaaatttatatatgtcttgtacttttaaaaatatttataaaaatca 160


Query: 1269 ttatcctcggtcaatgtttatcaaaaaccaccaattatgataacacaacaacaactattt 1328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159  ttatcctcggtcaatgtttatcaaaaaccaccaattatgataacacaacaacaactattt 100


Query: 1329 t 1329
            |
Sbjct: 99   t 99

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,628,330,618
Number of extensions: 105404940
Number of successful extensions: 9337367
Number of sequences better than 10.0: 171
Length of query: 1484
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1460
Effective length of database: 96,409,374,237
Effective search space: 140757686386020
Effective search space used: 140757686386020
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.16
Homology vs Protein 
Query= Contig-U15346-1 (Contig-U15346-1Q) /CSM_Contig/Contig-U15346-1Q.Seq.d
         (1484 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q550C1) RecName: Full=Protein TAPT1 homolog;                         342   0.0
AC116977_15(AC116977|pid:none) Dictyostelium discoideum chromoso...   342   0.0
(Q4VBD2) RecName: Full=Transmembrane anterior posterior transfor...   148   2e-73
(Q6NXT6) RecName: Full=Transmembrane anterior posterior transfor...   147   5e-73
AK296104_1(AK296104|pid:none) Homo sapiens cDNA FLJ52307 complet...   119   1e-64
(Q9U3H8) RecName: Full=Protein TAPT1 homolog;  &Z81514_9(Z81514|...   125   5e-64
(Q9VED0) RecName: Full=Protein TAPT1 homolog;  &AE014297_2526(AE...   117   2e-60
AM270229_1(AM270229|pid:none) Aspergillus niger contig An11c0120...   101   4e-53
FJ892241_1(FJ892241|pid:none) Anopheles gambiae S isolate KL47B(...   127   3e-48
FJ892221_1(FJ892221|pid:none) Anopheles gambiae M isolate KL227B...   127   6e-48
FJ892251_1(FJ892251|pid:none) Anopheles gambiae M isolate KL17B(...   127   6e-48
FJ892279_1(FJ892279|pid:none) Anopheles arabiensis isolate aar26...   125   1e-47
CR382138_667(CR382138|pid:none) Debaryomyces hansenii strain CBS...    96   6e-47
FN357887_3(FN357887|pid:none) Schistosoma mansoni genome sequenc...    94   2e-45
FM992693_62(FM992693|pid:none) Candida dubliniensis CD36 chromos...    87   8e-43
CP000499_94(CP000499|pid:none) Pichia stipitis CBS 6054 chromoso...    82   1e-41
(P40085) RecName: Full=Protein TAPT1 homolog;  &S50643(S50643) &...    84   2e-41
CP000594_272(CP000594|pid:none) Ostreococcus lucimarinus CCE9901...    86   4e-40
FN392322_473(FN392322|pid:none) Pichia pastoris GS115 chromosome...    82   5e-40
CQ834552_1(CQ834552|pid:none) Sequence 423 from Patent WO2004058...   119   5e-40
CR380955_291(CR380955|pid:none) Candida glabrata strain CBS138 c...    92   3e-37
AM920430_203(AM920430|pid:none) Penicillium chrysogenum Wisconsi...    99   3e-31
AJ719766_1(AJ719766|pid:none) Gallus gallus mRNA for hypothetica...   120   4e-30
AE017348_169(AE017348|pid:none) Cryptococcus neoformans var. neo...    93   1e-26
AK299163_1(AK299163|pid:none) Homo sapiens cDNA FLJ59140 complet...   110   2e-22
AY064002_1(AY064002|pid:none) Arabidopsis thaliana unknown prote...   107   1e-21
CR382126_547(CR382126|pid:none) Kluyveromyces lactis strain NRRL...    86   2e-21
AC091701_9(AC091701|pid:none) Trypanosoma brucei chromosome 8 cl...    62   1e-19
AC090882_6(AC090882|pid:none) Oryza sativa chromosome 3 BAC OSJN...    83   8e-19
AC012563_19(AC012563|pid:none) Arabidopsis thaliana chromosome 1...    78   1e-16
AL844502_214(AL844502|pid:none) Plasmodium falciparum 3D7 chromo...    64   2e-11
CR940348_678(CR940348|pid:none) Theileria annulata strain Ankara...    73   2e-11
AM910990_189(AM910990|pid:none) Plasmodium knowlesi strain H chr...    63   9e-11
AM502225_33(AM502225|pid:none) Leishmania infantum chromosome 7.       50   3e-09
AF189251_1(AF189251|pid:none) Homo sapiens cytomegalovirus parti...    65   5e-09
AM055943_252(AM055943|pid:none) Toxoplasma gondii RH, genomic DN...    57   1e-06
AP006878_1825(AP006878|pid:none) Thermococcus kodakarensis KOD1 ...    42   0.044
AL844509_580(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    37   1.4
AL035475_17(AL035475|pid:none) Plasmodium falciparum MAL4P2.  &A...    37   2.4
AL034557_40(AL034557|pid:none) Plasmodium falciparum MAL4P1.  &A...    37   2.4
AF335993_1(AF335993|pid:none) Thrips imaginis mitochondrion, com...    36   3.2
AM233362_1751(AM233362|pid:none) Francisella tularensis subsp. h...    36   3.2
CP000803_1422(CP000803|pid:none) Francisella tularensis subsp. h...    36   3.2
AJ749949_136(AJ749949|pid:none) Francisella tularensis subsp. tu...    36   4.1
AY871961_1(AY871961|pid:none) Synthetic construct hypothetical p...    36   4.1
(P75443) RecName: Full=Uncharacterized protein MPN_335;  &S73827...    36   4.1
AE014187_22(AE014187|pid:none) Plasmodium falciparum 3D7 chromos...    35   5.4
AL844503_164(AL844503|pid:none) Plasmodium falciparum 3D7 chromo...    35   5.4
EU877950_12(EU877950|pid:none) Sphaerius sp. BT0074 mitochondrio...    35   5.4
AE014186_292(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    35   5.4
AL031745_47(AL031745|pid:none) Plasmodium falciparum DNA from MA...    35   5.4
AF454666_1(AF454666|pid:none) Plasmodium falciparum isolate Ven-...    35   5.4
AF454665_1(AF454665|pid:none) Plasmodium falciparum isolate NF54...    35   7.1
DQ340832_11(DQ340832|pid:none) Daphnia pulex strain S11 mitochon...    35   7.1
AP003571_2(AP003571|pid:none) Oryza sativa Japonica Group genomi...    35   7.1
CP000487_1659(CP000487|pid:none) Campylobacter fetus subsp. fetu...    35   7.1
AM910985_178(AM910985|pid:none) Plasmodium knowlesi strain H chr...    35   7.1
DQ340819_11(DQ340819|pid:none) Daphnia pulex strain A11 mitochon...    35   7.1
AF378132_1(AF378132|pid:none) Plasmodium falciparum clone c-3-1-...    35   7.1
AF378136_1(AF378136|pid:none) Plasmodium falciparum clone g2-6-8...    35   7.1
AF378135_1(AF378135|pid:none) Plasmodium falciparum clone spz-MB...    35   7.1
DQ340820_11(DQ340820|pid:none) Daphnia pulex strain A5 mitochond...    35   9.2
(Q559A2) RecName: Full=Probable serine/threonine-protein kinase ...    35   9.2
CP001130_526(CP001130|pid:none) Hydrogenobaculum sp. Y04AAS1, co...    35   9.2
CP000453_419(CP000453|pid:none) Alkalilimnicola ehrlichii MLHE-1...    35   9.2
AF117817_11(AF117817|pid:none) Daphnia pulex mitochondrial genom...    35   9.2
EF154459_11(EF154459|pid:none) Romanomermis culicivorax mitochon...    35   9.2
AE014188_462(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    35   9.2

>(Q550C1) RecName: Full=Protein TAPT1 homolog;
          Length = 828

 Score =  342 bits (877), Expect(3) = 0.0
 Identities = 164/164 (100%), Positives = 164/164 (100%)
 Frame = +3

Query: 54  SIKVEPKKKSTSLWSFKTYLYDEIHGGYLSNEANDTLKREQVYNFVHVPWELEKLISFGF 233
           SIKVEPKKKSTSLWSFKTYLYDEIHGGYLSNEANDTLKREQVYNFVHVPWELEKLISFGF
Sbjct: 373 SIKVEPKKKSTSLWSFKTYLYDEIHGGYLSNEANDTLKREQVYNFVHVPWELEKLISFGF 432

Query: 234 LVCFDSFLFLFTFLPIRFFLSFLKFLISPFSKKNKLTTNQIFDLFRGFIWVTCFVFLNFI 413
           LVCFDSFLFLFTFLPIRFFLSFLKFLISPFSKKNKLTTNQIFDLFRGFIWVTCFVFLNFI
Sbjct: 433 LVCFDSFLFLFTFLPIRFFLSFLKFLISPFSKKNKLTTNQIFDLFRGFIWVTCFVFLNFI 492

Query: 414 DSSMLYHYIRGQAVIKLYVIYNVLEVLDKLCCSFGQDIFDSLYW 545
           DSSMLYHYIRGQAVIKLYVIYNVLEVLDKLCCSFGQDIFDSLYW
Sbjct: 493 DSSMLYHYIRGQAVIKLYVIYNVLEVLDKLCCSFGQDIFDSLYW 536

 Score =  321 bits (822), Expect(3) = 0.0
 Identities = 161/176 (91%), Positives = 161/176 (91%)
 Frame = +2

Query: 767  FVELKGSVFKRFEKENLFQISCSDIVERFQAFIFLTIIIFQNLSDLNWDLSWDFAINMLT 946
            FVELKGSVFKRFEKENLFQISCSDIVERFQAFIFLTIIIFQNLSDLNWDLSWDFAINMLT
Sbjct: 610  FVELKGSVFKRFEKENLFQISCSDIVERFQAFIFLTIIIFQNLSDLNWDLSWDFAINMLT 669

Query: 947  VVGTVWGSEVLVDAIKHAFITKFNKFSPQMYSKFFVLLSDTIVDPRNRNFTESSWGVNNI 1126
            VVGTVWGSEVLVDAIKHAFITKFNKFSPQMYSKFFVLLSDTIVDPRNRNFTESSWGVNNI
Sbjct: 670  VVGTVWGSEVLVDAIKHAFITKFNKFSPQMYSKFFVLLSDTIVDPRNRNFTESSWGVNNI 729

Query: 1127 IGFVPFPLASIVVRVFHKFIPSKGIFGIFLMVQIYXXXXXXXXXXXXXXXGQCLSK 1294
            IGFVPFPLASIVVRVFHKFIPSKGIFGIFLMVQIY               GQCLSK
Sbjct: 730  IGFVPFPLASIVVRVFHKFIPSKGIFGIFLMVQIYICLVLLKIFIKIIILGQCLSK 785

 Score =  147 bits (372), Expect(3) = 0.0
 Identities = 78/82 (95%), Positives = 78/82 (95%)
 Frame = +1

Query: 523 IFLILYIGMSFSLTSSNRNRQDGLVPKQRNETRILGPFTHLLVATGYVCLHSLVLFSQVI 702
           IF  LY  MSFSLTSSNRNRQDGLVPKQRNETRILGPFTHLLVATGYVCLHSLVLFSQVI
Sbjct: 530 IFDSLY-WMSFSLTSSNRNRQDGLVPKQRNETRILGPFTHLLVATGYVCLHSLVLFSQVI 588

Query: 703 TLNVAINSYNNALLTLMISNQF 768
           TLNVAINSYNNALLTLMISNQF
Sbjct: 589 TLNVAINSYNNALLTLMISNQF 610

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,976,603,190
Number of extensions: 37587177
Number of successful extensions: 104947
Number of sequences better than 10.0: 68
Number of HSP's gapped: 103834
Number of HSP's successfully gapped: 138
Length of query: 494
Length of database: 1,051,180,864
Length adjustment: 133
Effective length of query: 361
Effective length of database: 620,718,517
Effective search space: 224079384637
Effective search space used: 224079384637
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.57  gvh: 0.37  alm: 0.17  top: 0.40  tms: 0.20  mit: 0.21  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: plasma membrane
	 36.0 %: endoplasmic reticulum
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: cytoplasmic
	  4.0 %: nuclear
	  4.0 %: peroxisomal

>> prediction for Contig-U15346-1 is pla
VS (DIR, S) 0
VH (FL, L) 2
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 6
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0