NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15336-1
Contig ID Contig-U15336-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15336-1 (Contig-U15336-1Q) /CSM_Contig/Contig-U15336-1Q.Seq.d
TTGCTATAGATGTTGGTATTGCAGGTGGTGCTATCGTTGCAGGCGCTGGT
GCAGCAGCAGCCGGTGCAGCAGCCGGTGCTGAGGGTGGTGCCGCAGGAGT
TGCTTCCAGAGCTGGTGGTTATATTTCTCGTACTGCTAGTCGTGTTGGTA
ACTCTATACGTAANAGAGCTACTCGTTATGCTAATCAAGGTTACAATTCC
ATGAGATATGGTGCACAAAGAGCTGGCAACGGCGCACGTAATTATGCCCA
ACAAGGTTATCAAGCATGGAGAGAAGGTGTCAATGAGATTGGTGATGATA
TCGCCAATACTGCACATGATGTAGGTGATGGTTTCGCCAATACTGCACGT
GAAGTAGGTGATGGAATTAGAATCACTGTAGAGGAGGGATATGAACTCAT
TAAAGATGGAGCTGAAGAAACTTGGGTGAAGAAATATTAAAGGTTATCCT
TAATTAAAATTAAAAAAGCACAACAAAGAATGGCTGAACAAGAAGAAAGA
AGAAGGTTGATGCAAGAAGAAAGTGAAAGAAGACGATTGCAAAGAAACAG
AGAAAGACAAGAGCCAATTAGAACTTATACAACTGCACAAGAAGCTCAAC
GATATATACCCAAACCTGGTAACTTTGCACGTAAAAGAGGTGCAAGTAAA
TTAAAAAAGNAAAAAATAAAAATA
Gap no gap
Contig length 674
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 1492600
End point 1493198
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U15336
List of clone(s) 

est1=CHN204Z,1,674
est2=CHD169Z,194,548
Translated Amino Acid sequence 
AIDVGIAGGAIVAGAGAAAAGAAAGAEGGAAGVASRAGGYISRTASRVGNSIRXRATRYA
NQGYNSMRYGAQRAGNGARNYAQQGYQAWREGVNEIGDDIANTAHDVGDGFANTAREVGD
GIRITVEEGYELIKDGAEETWVKKY*rlslikikkaqqrmaeqeerrrlmqeeserrrlq
rnrerqepirtyttaqeaqryipkpgnfarkrgasklkkxkiki
Translated Amino Acid sequence (All Frames) 
Frame A:
ll*mlvlqvvlslqalvqqqpvqqpvlrvvpqellpelvviflvllvvlvtlyvxellvm
likvtip*dmvhkelatahvimpnkvikhgekvsmrlvmispilhmm*vmvspilhvk*v
melesl*rrdmnslkmelkklg*rnikgyp*lklkkhnkewlnkkkeeg*ckkkvkeddc
ketekdksqleliqlhkklndiypnlvtlhvkevqvn*kxkk*k


Frame B:
cyrcwycrwcyrcrrwcsssrcssrc*gwcrrscfqswwlyfsyc*scw*lyt*xsyslc
*srlqfheiwctkswqrrt*lcptrlssmerrcq*dw**yrqyct*cr*wfrqyct*sr*
wn*nhcrggi*th*rws*rnlgeeilkviln*n*ksttkng*trrkkkvdarrk*kktia
kkqrktran*nlynctrsstiytqtw*lct*krck*ikkxknkn


Frame C:
AIDVGIAGGAIVAGAGAAAAGAAAGAEGGAAGVASRAGGYISRTASRVGNSIRXRATRYA
NQGYNSMRYGAQRAGNGARNYAQQGYQAWREGVNEIGDDIANTAHDVGDGFANTAREVGD
GIRITVEEGYELIKDGAEETWVKKY*rlslikikkaqqrmaeqeerrrlmqeeserrrlq
rnrerqepirtyttaqeaqryipkpgnfarkrgasklkkxkiki
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15336-1 (Contig-U15336-1Q)
/CSM_Contig/Contig-U15336-1Q.Seq.d
         (674 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15336-1 (Contig-U15336-1Q) /CSM_Contig/Conti...   954  0.0
Contig-U10050-1 (Contig-U10050-1Q) /CSM_Contig/Conti...    36  0.067
Contig-U00542-1 (Contig-U00542-1Q) /CSM_Contig/Conti...    36  0.067
Contig-U15485-1 (Contig-U15485-1Q) /CSM_Contig/Conti...    34  0.27
Contig-U12435-1 (Contig-U12435-1Q) /CSM_Contig/Conti...    34  0.27
Contig-U04954-1 (Contig-U04954-1Q) /CSM_Contig/Conti...    34  0.27
Contig-U16351-1 (Contig-U16351-1Q) /CSM_Contig/Conti...    32  1.1
Contig-U16323-1 (Contig-U16323-1Q) /CSM_Contig/Conti...    32  1.1
Contig-U16228-1 (Contig-U16228-1Q) /CSM_Contig/Conti...    32  1.1

>Contig-U15336-1 (Contig-U15336-1Q) /CSM_Contig/Contig-U15336-1Q.Seq.d
          Length = 674

 Score =  954 bits (481), Expect = 0.0
 Identities = 484/484 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgctatagatgttggtattgcaggtggtgctatcgttgcaggcgctggtgcagcagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ttgctatagatgttggtattgcaggtggtgctatcgttgcaggcgctggtgcagcagcag 60

                                                                       
Query: 61  ccggtgcagcagccggtgctgagggtggtgccgcaggagttgcttccagagctggtggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ccggtgcagcagccggtgctgagggtggtgccgcaggagttgcttccagagctggtggtt 120

                                                                       
Query: 121 atatttctcgtactgctagtcgtgttggtaactctatacgtaanagagctactcgttatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atatttctcgtactgctagtcgtgttggtaactctatacgtaanagagctactcgttatg 180

                                                                       
Query: 181 ctaatcaaggttacaattccatgagatatggtgcacaaagagctggcaacggcgcacgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctaatcaaggttacaattccatgagatatggtgcacaaagagctggcaacggcgcacgta 240

                                                                       
Query: 241 attatgcccaacaaggttatcaagcatggagagaaggtgtcaatgagattggtgatgata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 attatgcccaacaaggttatcaagcatggagagaaggtgtcaatgagattggtgatgata 300

                                                                       
Query: 301 tcgccaatactgcacatgatgtaggtgatggtttcgccaatactgcacgtgaagtaggtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcgccaatactgcacatgatgtaggtgatggtttcgccaatactgcacgtgaagtaggtg 360

                                                                       
Query: 361 atggaattagaatcactgtagaggagggatatgaactcattaaagatggagctgaagaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atggaattagaatcactgtagaggagggatatgaactcattaaagatggagctgaagaaa 420

                                                                       
Query: 421 cttgggtgaagaaatattaaaggttatccttaattaaaattaaaaaagcacaacaaagaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cttgggtgaagaaatattaaaggttatccttaattaaaattaaaaaagcacaacaaagaa 480

               
Query: 481 tggc 484
           ||||
Sbjct: 481 tggc 484


 Score =  234 bits (118), Expect = 1e-61
 Identities = 118/118 (100%)
 Strand = Plus / Plus

                                                                       
Query: 534 cgattgcaaagaaacagagaaagacaagagccaattagaacttatacaactgcacaagaa 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 cgattgcaaagaaacagagaaagacaagagccaattagaacttatacaactgcacaagaa 593

                                                                     
Query: 594 gctcaacgatatatacccaaacctggtaactttgcacgtaaaagaggtgcaagtaaat 651
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gctcaacgatatatacccaaacctggtaactttgcacgtaaaagaggtgcaagtaaat 651


>Contig-U10050-1 (Contig-U10050-1Q) /CSM_Contig/Contig-U10050-1Q.Seq.d
          Length = 1167

 Score = 36.2 bits (18), Expect = 0.067
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 450  ttaattaaaattaaaaaa 467
            ||||||||||||||||||
Sbjct: 1144 ttaattaaaattaaaaaa 1161


>Contig-U00542-1 (Contig-U00542-1Q) /CSM_Contig/Contig-U00542-1Q.Seq.d
          Length = 1241

 Score = 36.2 bits (18), Expect = 0.067
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 450 ttaattaaaattaaaaaa 467
           ||||||||||||||||||
Sbjct: 124 ttaattaaaattaaaaaa 107


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7288
Number of Sequences: 8402
Number of extensions: 7288
Number of successful extensions: 906
Number of sequences better than 10.0: 115
length of query: 674
length of database: 8,075,542
effective HSP length: 16
effective length of query: 658
effective length of database: 7,941,110
effective search space: 5225250380
effective search space used: 5225250380
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.20
Homology vs DNA 
Query= Contig-U15336-1 (Contig-U15336-1Q) /CSM_Contig/Contig-U15336-1Q.Seq.d
         (674 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ384054) Dictyostelium discoideum cDNA clone:ddc48g02, 3' ...   908   0.0    2
(BJ373365) Dictyostelium discoideum cDNA clone:ddc2d02, 3' e...   527   0.0    4
(BJ398198) Dictyostelium discoideum cDNA clone:dds11n07, 3' ...   527   0.0    3
(BJ399647) Dictyostelium discoideum cDNA clone:dds6i20, 3' e...   527   0.0    3
(BJ398363) Dictyostelium discoideum cDNA clone:dds12m01, 3' ...   527   0.0    3
(AU034833) Dictyostelium discoideum slug cDNA, clone SLE562.      527   0.0    3
(C92956) Dictyostelium discoideum slug cDNA, clone SSF267.        527   0.0    3
(BJ342924) Dictyostelium discoideum cDNA clone:dda15m11, 3' ...   527   0.0    3
(BJ342298) Dictyostelium discoideum cDNA clone:dda13h11, 3' ...   527   0.0    3
(AU034943) Dictyostelium discoideum slug cDNA, clone SLE376.      527   0.0    3
(BJ347723) Dictyostelium discoideum cDNA clone:dda27p22, 3' ...   527   0.0    3
(BJ409691) Dictyostelium discoideum cDNA clone:dds42m22, 3' ...   527   0.0    3
(BJ346113) Dictyostelium discoideum cDNA clone:dda29l02, 3' ...   527   0.0    3
(BJ400829) Dictyostelium discoideum cDNA clone:dds15c01, 3' ...   527   0.0    3
(BJ376535) Dictyostelium discoideum cDNA clone:ddc28n19, 3' ...   527   0.0    3
(BJ377352) Dictyostelium discoideum cDNA clone:ddc24b12, 3' ...   527   0.0    3
(BJ376412) Dictyostelium discoideum cDNA clone:ddc28n07, 3' ...   527   0.0    3
(BJ346400) Dictyostelium discoideum cDNA clone:dda30e23, 3' ...   527   0.0    3
(BJ347699) Dictyostelium discoideum cDNA clone:dda27k21, 3' ...   527   0.0    3
(BJ400827) Dictyostelium discoideum cDNA clone:dds15b05, 3' ...   527   0.0    3
(BJ376121) Dictyostelium discoideum cDNA clone:ddc21c10, 3' ...   527   0.0    3
(BJ372969) Dictyostelium discoideum cDNA clone:ddc15m06, 3' ...   527   0.0    3
(BJ398324) Dictyostelium discoideum cDNA clone:dds12c03, 3' ...   527   0.0    3
(BJ376425) Dictyostelium discoideum cDNA clone:ddc28a15, 3' ...   527   0.0    3
(BJ342204) Dictyostelium discoideum cDNA clone:dda9l22, 3' e...   527   0.0    3
(BJ397942) Dictyostelium discoideum cDNA clone:dds10f11, 3' ...   527   0.0    3
(BJ375287) Dictyostelium discoideum cDNA clone:ddc18l05, 3' ...   527   0.0    3
(BJ375900) Dictyostelium discoideum cDNA clone:ddc20p08, 3' ...   527   0.0    3
(BJ375319) Dictyostelium discoideum cDNA clone:ddc18c12, 3' ...   527   0.0    3
(BJ343414) Dictyostelium discoideum cDNA clone:dda16c05, 3' ...   527   0.0    3
(BJ345755) Dictyostelium discoideum cDNA clone:dda28p16, 3' ...   527   0.0    3
(BJ340022) Dictyostelium discoideum cDNA clone:dda11g11, 3' ...   527   0.0    3
(BJ375390) Dictyostelium discoideum cDNA clone:ddc18e14, 3' ...   527   0.0    3
(AU053271) Dictyostelium discoideum slug cDNA, clone SLI292.      527   0.0    2
(AU052444) Dictyostelium discoideum slug cDNA, clone SLD327.      527   0.0    2
(AU052409) Dictyostelium discoideum slug cDNA, clone SLD271.      527   0.0    2
(AU039769) Dictyostelium discoideum slug cDNA, clone SLG377.      527   0.0    2
(AU053213) Dictyostelium discoideum slug cDNA, clone SLI156.      527   0.0    2
(AU052348) Dictyostelium discoideum slug cDNA, clone SLD176.      527   0.0    2
(BJ377545) Dictyostelium discoideum cDNA clone:ddc24b03, 3' ...   527   0.0    2
(BJ342265) Dictyostelium discoideum cDNA clone:dda13n06, 3' ...   527   0.0    2
(AU052481) Dictyostelium discoideum slug cDNA, clone SLD404.      527   0.0    2
(AU033991) Dictyostelium discoideum slug cDNA, clone SLB705.      527   0.0    2
(BJ342984) Dictyostelium discoideum cDNA clone:dda15o13, 3' ...   527   0.0    2
(BJ340452) Dictyostelium discoideum cDNA clone:dda2m03, 3' e...   527   0.0    2
(BJ372200) Dictyostelium discoideum cDNA clone:ddc11l13, 3' ...   527   0.0    2
(BJ400270) Dictyostelium discoideum cDNA clone:dds9d14, 3' e...   527   0.0    2
(BJ399788) Dictyostelium discoideum cDNA clone:dds7b13, 3' e...   527   0.0    2
(BJ342430) Dictyostelium discoideum cDNA clone:dda13o23, 3' ...   527   0.0    2
(BJ400310) Dictyostelium discoideum cDNA clone:dds9o16, 3' e...   527   0.0    2
(AU039981) Dictyostelium discoideum slug cDNA, clone SLH373.      527   0.0    2
(AU033982) Dictyostelium discoideum slug cDNA, clone SLB691.      527   0.0    2
(BJ400697) Dictyostelium discoideum cDNA clone:dds14j09, 3' ...   527   0.0    2
(BJ375831) Dictyostelium discoideum cDNA clone:ddc20m02, 3' ...   527   0.0    2
(BJ344206) Dictyostelium discoideum cDNA clone:dda18c20, 3' ...   527   0.0    3
(AU052820) Dictyostelium discoideum slug cDNA, clone SLF163.      519   0.0    2
(AU039563) Dictyostelium discoideum slug cDNA, clone SLE759.      519   0.0    2
(AU033472) Dictyostelium discoideum slug cDNA, clone SLA869.      519   0.0    2
(AU039246) Dictyostelium discoideum slug cDNA, clone SLH268.      519   0.0    2
(BJ378223) Dictyostelium discoideum cDNA clone:ddc27o20, 3' ...   527   0.0    3
(BJ345553) Dictyostelium discoideum cDNA clone:dda28f02, 3' ...   527   0.0    3
(BJ341916) Dictyostelium discoideum cDNA clone:dda8p13, 3' e...   527   0.0    3
(BJ375094) Dictyostelium discoideum cDNA clone:ddc17m08, 3' ...   527   0.0    2
(BJ402104) Dictyostelium discoideum cDNA clone:dds20c13, 3' ...   527   0.0    2
(BJ340085) Dictyostelium discoideum cDNA clone:dda11g14, 3' ...   527   0.0    4
(BJ374403) Dictyostelium discoideum cDNA clone:ddc7l17, 3' e...   527   0.0    3
(AU052525) Dictyostelium discoideum slug cDNA, clone SLD469.      500   e-179  2
(BJ344234) Dictyostelium discoideum cDNA clone:dda18h24, 3' ...   527   e-179  4
(BJ399699) Dictyostelium discoideum cDNA clone:dds7g03, 3' e...   527   e-179  4
(BJ350539) Dictyostelium discoideum cDNA clone:dda40o04, 3' ...   527   e-179  4
(BJ373966) Dictyostelium discoideum cDNA clone:ddc5k13, 3' e...   519   e-179  4
(BJ399201) Dictyostelium discoideum cDNA clone:dds4a24, 3' e...   527   e-179  4
(BJ398161) Dictyostelium discoideum cDNA clone:dds11d07, 3' ...   521   e-178  3
(BJ342857) Dictyostelium discoideum cDNA clone:dda15l05, 3' ...   527   e-177  4
(BJ398349) Dictyostelium discoideum cDNA clone:dds12j01, 3' ...   527   e-177  4
(BJ400305) Dictyostelium discoideum cDNA clone:dds9n14, 3' e...   527   e-177  4
(BJ346431) Dictyostelium discoideum cDNA clone:dda30k20, 3' ...   527   e-177  4
(BJ339920) Dictyostelium discoideum cDNA clone:dda10p19, 3' ...   527   e-177  4
(BJ401159) Dictyostelium discoideum cDNA clone:dds22h07, 3' ...   527   e-177  4
(BJ374282) Dictyostelium discoideum cDNA clone:ddc7e05, 3' e...   513   e-177  3
(AU052435) Dictyostelium discoideum slug cDNA, clone SLD314.      492   e-177  2
(BJ341925) Dictyostelium discoideum cDNA clone:dda8c24, 3' e...   527   e-176  4
(BJ399172) Dictyostelium discoideum cDNA clone:dds4f18, 3' e...   519   e-176  4
(BJ376461) Dictyostelium discoideum cDNA clone:ddc28j17, 3' ...   527   e-175  4
(BJ372040) Dictyostelium discoideum cDNA clone:ddc11d03, 3' ...   519   e-175  4
(BJ398572) Dictyostelium discoideum cDNA clone:dds1b01, 3' e...   527   e-174  3
(BJ401737) Dictyostelium discoideum cDNA clone:dds19a11, 3' ...   527   e-174  4
(BJ378043) Dictyostelium discoideum cDNA clone:ddc26k20, 3' ...   527   e-173  3
(BJ372364) Dictyostelium discoideum cDNA clone:ddc12f07, 3' ...   527   e-173  4
(BJ400833) Dictyostelium discoideum cDNA clone:dds15d01, 3' ...   527   e-173  4
(BJ376514) Dictyostelium discoideum cDNA clone:ddc28h24, 3' ...   527   e-173  4
(BJ345863) Dictyostelium discoideum cDNA clone:dda29f10, 3' ...   527   e-173  4
(BJ346755) Dictyostelium discoideum cDNA clone:dda24n19, 3' ...   527   e-173  4
(BJ344331) Dictyostelium discoideum cDNA clone:dda18l04, 3' ...   527   e-173  4
(BJ372359) Dictyostelium discoideum cDNA clone:ddc12d10, 3' ...   527   e-173  4
(BJ375450) Dictyostelium discoideum cDNA clone:ddc18c19, 3' ...   527   e-173  4
(BJ345859) Dictyostelium discoideum cDNA clone:dda29e07, 3' ...   527   e-173  4
(BJ343559) Dictyostelium discoideum cDNA clone:dda16o09, 3' ...   527   e-173  4
(BJ339989) Dictyostelium discoideum cDNA clone:dda11p04, 3' ...   527   e-173  4
(BJ399889) Dictyostelium discoideum cDNA clone:dds7l23, 3' e...   527   e-173  4

>(BJ384054) Dictyostelium discoideum cDNA clone:ddc48g02, 3' end,
           single read.
          Length = 674

 Score =  908 bits (458), Expect(2) = 0.0
 Identities = 461/461 (100%)
 Strand = Plus / Minus


Query: 1   ttgctatagatgttggtattgcaggtggtgctatcgttgcaggcgctggtgcagcagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ttgctatagatgttggtattgcaggtggtgctatcgttgcaggcgctggtgcagcagcag 615


Query: 61  ccggtgcagcagccggtgctgagggtggtgccgcaggagttgcttccagagctggtggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ccggtgcagcagccggtgctgagggtggtgccgcaggagttgcttccagagctggtggtt 555


Query: 121 atatttctcgtactgctagtcgtgttggtaactctatacgtaanagagctactcgttatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 atatttctcgtactgctagtcgtgttggtaactctatacgtaanagagctactcgttatg 495


Query: 181 ctaatcaaggttacaattccatgagatatggtgcacaaagagctggcaacggcgcacgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ctaatcaaggttacaattccatgagatatggtgcacaaagagctggcaacggcgcacgta 435


Query: 241 attatgcccaacaaggttatcaagcatggagagaaggtgtcaatgagattggtgatgata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 attatgcccaacaaggttatcaagcatggagagaaggtgtcaatgagattggtgatgata 375


Query: 301 tcgccaatactgcacatgatgtaggtgatggtttcgccaatactgcacgtgaagtaggtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tcgccaatactgcacatgatgtaggtgatggtttcgccaatactgcacgtgaagtaggtg 315


Query: 361 atggaattagaatcactgtagaggagggatatgaactcattaaagatggagctgaagaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atggaattagaatcactgtagaggagggatatgaactcattaaagatggagctgaagaaa 255


Query: 421 cttgggtgaagaaatattaaaggttatccttaattaaaatt 461
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cttgggtgaagaaatattaaaggttatccttaattaaaatt 214

 Score =  178 bits (90), Expect(2) = 0.0
 Identities = 90/90 (100%)
 Strand = Plus / Minus


Query: 563 gccaattagaacttatacaactgcacaagaagctcaacgatatatacccaaacctggtaa 622
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 gccaattagaacttatacaactgcacaagaagctcaacgatatatacccaaacctggtaa 53


Query: 623 ctttgcacgtaaaagaggtgcaagtaaatt 652
           ||||||||||||||||||||||||||||||
Sbjct: 52  ctttgcacgtaaaagaggtgcaagtaaatt 23

 Score = 50.1 bits (25), Expect(2) = 0.004
 Identities = 37/41 (90%)
 Strand = Plus / Minus


Query: 291 ggtgatgatatcgccaatactgcacatgatgtaggtgatgg 331
           ||||||| | ||||||||||||||| ||| |||||||||||
Sbjct: 351 ggtgatggtttcgccaatactgcacgtgaagtaggtgatgg 311

 Score = 50.1 bits (25), Expect(2) = 0.004
 Identities = 37/41 (90%)
 Strand = Plus / Minus


Query: 324 ggtgatggtttcgccaatactgcacgtgaagtaggtgatgg 364
           ||||||| | ||||||||||||||| ||| |||||||||||
Sbjct: 384 ggtgatgatatcgccaatactgcacatgatgtaggtgatgg 344

 Score = 28.2 bits (14), Expect(2) = 0.004
 Identities = 14/14 (100%)
 Strand = Plus / Minus


Query: 54  gcagcagccggtgc 67
           ||||||||||||||
Sbjct: 609 gcagcagccggtgc 596

 Score = 28.2 bits (14), Expect(2) = 0.004
 Identities = 14/14 (100%)
 Strand = Plus / Minus


Query: 66  gcagcagccggtgc 79
           ||||||||||||||
Sbjct: 621 gcagcagccggtgc 608

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 516,518,718
Number of extensions: 29812617
Number of successful extensions: 2234691
Number of sequences better than 10.0: 379
Length of query: 674
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 650
Effective length of database: 100,704,341,533
Effective search space: 65457821996450
Effective search space used: 65457821996450
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.15
Homology vs Protein 
Query= Contig-U15336-1 (Contig-U15336-1Q) /CSM_Contig/Contig-U15336-1Q.Seq.d
         (674 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116551_24(AC116551|pid:none) Dictyostelium discoideum chromoso...    57   7e-07
Z69360_4(Z69360|pid:none) Caenorhabditis elegans Cosmid F25H8, c...    41   0.037
AJ628940_1(AJ628940|pid:none) Pisum sativum mRNA for late embryo...    41   0.037
Z69360_3(Z69360|pid:none) Caenorhabditis elegans Cosmid F25H8, c...    41   0.037
AM421808_498(AM421808|pid:none) Neisseria meningitidis serogroup...    40   0.049
T21369(T21369)hypothetical protein F25H8.5a - Caenorhabditis ele...    40   0.083
AC146855_28(AC146855|pid:none) Medicago truncatula clone mth2-16...    39   0.11
AE017180_1660(AE017180|pid:none) Geobacter sulfurreducens PCA, c...    37   0.54
CP001189_3378(CP001189|pid:none) Gluconacetobacter diazotrophicu...    36   1.2
AM889285_1673(AM889285|pid:none) Gluconacetobacter diazotrophicu...    36   1.2
CP000138_362(CP000138|pid:none) Rhizobium etli CFN 42 plasmid p4...    35   2.0
Z69360_5(Z69360|pid:none) Caenorhabditis elegans Cosmid F25H8, c...    35   2.7
CP000235_161(CP000235|pid:none) Anaplasma phagocytophilum HZ, co...    35   2.7
CP001344_3959(CP001344|pid:none) Cyanothece sp. PCC 7425, comple...    35   2.7
CT573213_2889(CT573213|pid:none) Frankia alni str. ACN14A chromo...    34   3.5
AL844509_662(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    34   3.5
EU780020_1(EU780020|pid:none) Fucus serratus isolate Fse_00017 h...    34   4.6
CR382128_579(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...    34   4.6
DQ491001_615(DQ491001|pid:none) Paramecium bursaria chlorella vi...    33   6.0
T21370(T21370)hypothetical protein F25H8.5b - Caenorhabditis ele...    33   6.0

>AC116551_24(AC116551|pid:none) Dictyostelium discoideum chromosome
           2 map complement(581327-427576) strain AX4, complete
           sequence.
          Length = 84

 Score = 56.6 bits (135), Expect = 7e-07
 Identities = 32/68 (47%), Positives = 34/68 (50%)
 Frame = +3

Query: 441 RLSLIKIKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPIRTYTTAQEAQRYIPKPG 620
           R+ LIKIKK                                PIRT+ TAQEAQRYIPKPG
Sbjct: 15  RVKLIKIKKTQKRLAEQEERRRLMQEESERRRLQRLREKQEPIRTFATAQEAQRYIPKPG 74

Query: 621 NFARKRGA 644
           NFARKRGA
Sbjct: 75  NFARKRGA 82

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 706,502,593
Number of extensions: 11485218
Number of successful extensions: 36028
Number of sequences better than 10.0: 20
Number of HSP's gapped: 35934
Number of HSP's successfully gapped: 30
Length of query: 224
Length of database: 1,051,180,864
Length adjustment: 124
Effective length of query: 100
Effective length of database: 649,847,548
Effective search space: 64984754800
Effective search space used: 64984754800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.75  gvh: 0.52  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.04  mip: 0.14
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 12.0 %: nuclear
	  8.0 %: vacuolar
	  8.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U15336-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 2
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0