>Contig-U15329-1 (Contig-U15329-1Q) /CSM_Contig/Contig-U15329-1Q.Seq.d
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTATTATTTTATTTAAT
AAAACATATACATATAACACATATTTTAATTACAAATACACACAACTCCT
AAATAATAAAATTTTTAAAAAATGAATATAAGAGAAAAAAAGAAAACCAG
TCATAGATCAACAGTTGCAGTCCATAAAGCACTAAATGAAAAAGATAGAG
AATTTAATTACTTTTTACCATTATTAAAAGAAAAGAAAACAAGTATTGTA
TCAAATGCAATCAATAATTTAAATTATATTCTTACATATCAATCTGAAAG
AGAAGAACAAGTTAGCAAAGATATTCTCGAAGCTTTATGCCAACTCTTTA
CAAATGGTGTCTCTGGCAAATTGGATAAACCCGAAGAACTTGGTAAATGT
ATTGGTTTAGTATGCTTAAAGACTGGAGAAAATAATGAATTCTACCGTTA
TATTAAAACCACACTCTCTTCAATTATAACCGATGGTGAAGCTCACATTA
AAGATAATGAATTAATGGCTGCAATCTATGCGCTATCTCAGTCATGTTTC
TATTGTTGTACTGATCGTGACTCTTATAAACATACAATTTCCTTATTCCA
AGATTTATTATATACACAAAAAAAAAAAAATATTCAAGATAAATTATTAT
CAGCTTGGTTATTATTATTAACAAGAGTTAATCCTCAAGAAATGACAAAT
TATAAAATGGTTTTACCAAGATTAATTGAATTATCAAAATCATCATCACA
AAATGTTAGATTATCTGCATCATTGAGTATTGCAATGATTGTTGATGATG
TTAAAGAAAAAGTATTGGAAGATTTTGAAAGTGAAATGGGTAGTGAAGAT
TTAAATGAAGATTATGAAGAATATGATGATGATGAAGATTATGATGGTGA
ATATAATTATGATGAAGAAGAAGAAGAGATCGAAAGGGATTATAGAAGAA
GTAGTGATAATGGAGGTAAATCAGCAGCACCAATTGATCAATTAAATAAT
TTAAGTTTTAATGGTGATGAATATAATAGCGATGATGATGAGGAAGGTGA
ATTTAGTGAATATAGTGAAGAGGATACAGTGAATCAATTCATTGTAGACG
ATGATCATATGGTACAAGTTATTGAAGGAACCCTTAGTTTAAATAATGAA
AAGGGTAAGAAAAAAATTCAATCCAAAACATTGTTACGTCAAATCCTTGG
AAATTTAAAGGATGGTGATTCACCAAAAGAAACTATCATCATCTATGGTT
TACCATTCCATTTCAGTGGTTGGAGAAAGTATATCCAATTGGAAGGTTTA
CGTAAACTCGTTGGTAATGCTATGATGGCTCAATGGCAAAATCCATTAAT
TCAAAAACAATTTGGTATTGAAATTCCTGAAGGTAATCGTTTAAGAGAAG
CCAAATACCAATTAAAAAGATCAATCTCTCAAAAGAAAAAAGCAGACTAT
GATAGATCAGTTCGTTCAGAAAGTACTTTATTTGAAAATAATGCTGCCAA
TTAATTTTTAATAAATAAATAAAAATAATAATAATAATAGTTTTAATTTA
AATAATTTAATCTTCTCTCTCTATGATTAGAAAAAGTATTCTCAATTTTT
ATTTTTATTTTTTTTTAGGAAAAAAAAAAAAAAAAATCAAAAAATTTTA

est1=SSC735F,1,670
est2=CHB885F,24,151
est3=VFD239F,28,627
est4=CFD708F,36,552
est5=CFH732F,36,595
est6=AFE868F,38,361
est7=AFK443F,38,614
est8=SFD556F,39,594
est9=CHA306F,40,604
est10=CFA496F,42,631
est11=CFH750F,43,573
est12=AFK836F,44,628
est13=CFG493F,44,630
est14=CFK411F,44,390
est15=CHD235F,44,630
est16=CFD716F,48,630
est17=CFE177F,48,591
est18=CFJ395F,48,630
est19=CFB525F,51,556
est20=AFF526F,52,628
est21=AFH838F,52,553
est22=AHD545F,56,628
est23=SLF309F,68,362
est24=FC-BH18F,73,597
est25=AFD545E,91,1533
est26=SFL191F,91,595
est27=VSD106F,108,627
est28=CFC421F,111,270
est29=SFJ114F,123,627
est30=SFD704F,292,627
est31=CFK411Z,734,1531
est32=CFG493Z,736,1492
est33=VFD239Z,736,1523
est34=AHD545Z,740,1528
est35=SSC735Z,752,1497
est36=AFD839Z,762,1516
est37=AFK443Z,763,1530
est38=AFK836Z,763,1516
est39=SFJ114Z,790,1563
est40=CFJ395Z,817,1502
est41=CHD235Z,817,1533
est42=SFD556Z,826,1537
est43=SFL119Z,831,1436
est44=CFC421Z,835,1473
est45=CFA496Z,836,1515
est46=AFH838Z,837,1516
est47=AFE868Z,865,1533
est48=CFH732Z,865,1513
est49=SFL191Z,867,1514
est50=SFD704Z,871,1528
est51=CFB525Z,916,1529
est52=SSK305Z,933,1619
est53=CFB692Z,938,1474
est54=CFH750Z,944,1507
est55=SLF309Z,1011,1559
est56=CFC603Z,1106,1496
est57=CHB885Z,1118,1517
est58=SFB455Z,1187,1536
est59=AFF526Z,1236,1538
est60=CFD716Z,1245,1359
est61=FC-BH18Z,1525,1649

kkkkkkkkkkiyyfi**niyi*hif*lqihttpk**nf*KMNIREKKKTSHRSTVAVHKA
LNEKDREFNYFLPLLKEKKTSIVSNAINNLNYILTYQSEREEQVSKDILEALCQLFTNGV
SGKLDKPEELGKCIGLVCLKTGENNEFYRYIKTTLSSIITDGEAHIKDNELMAAIYALSQ
SCFYCCTDRDSYKHTISLFQDLLYTQKKKNIQDKLLSAWLLLLTRVNPQEMTNYKMVLPR
LIELSKSSSQNVRLSASLSIAMIVDDVKEKVLEDFESEMGSEDLNEDYEEYDDDEDYDGE
YNYDEEEEEIERDYRRSSDNGGKSAAPIDQLNNLSFNGDEYNSDDDEEGEFSEYSEEDTV
NQFIVDDDHMVQVIEGTLSLNNEKGKKKIQSKTLLRQILGNLKDGDSPKETIIIYGLPFH
FSGWRKYIQLEGLRKLVGNAMMAQWQNPLIQKQFGIEIPEGNRLREAKYQLKRSISQKKK
ADYDRSVRSESTLFENNAAN*flink*k*****f*fk*fnllsl*lekvfsifififf*e
kkkkksknf

Frame A:
kkkkkkkkkknllfylikhihithilitnthns*iikflkneykrkkenqs*inscsp*s
tk*kr*ri*llftiikrkenkycikcnq*fklysyisi*krrts*qrysrsfmptlykwc
lwqig*trrtw*mywfsmlkdwrk**ilply*nhtlfnynrw*ssh*r**ingcnlcais
vmfllly*s*ll*tynfliprfiiytkkkkysr*iiislviiinks*ssrndkl*ngftk
in*iikiiitkc*iiciieycndc**c*rksigrf*k*ng**rfk*rl*ri****rl*w*
i*l**rrrrdrkgl*kk***wr*isstn*sik*fkf*w**i**r***gr*i**i**rgys
esihcrr*sygtsy*rnp*fk**kg*eknsiqnivtsnpwkfkgw*ftkrnyhhlwftip
fqwlekvypigrft*trw*cydgsmaksinsktiwy*ns*r*sfkrsqipikkinlskek
srl**issfrkyfi*k*ccqlifnk*ikiiiiivli*ii*sslsmirksilnfyfyfflg
kkkkkikkf


Frame B:
kkkkkkkkkkiyyfi**niyi*hif*lqihttpk**nf*KMNIREKKKTSHRSTVAVHKA
LNEKDREFNYFLPLLKEKKTSIVSNAINNLNYILTYQSEREEQVSKDILEALCQLFTNGV
SGKLDKPEELGKCIGLVCLKTGENNEFYRYIKTTLSSIITDGEAHIKDNELMAAIYALSQ
SCFYCCTDRDSYKHTISLFQDLLYTQKKKNIQDKLLSAWLLLLTRVNPQEMTNYKMVLPR
LIELSKSSSQNVRLSASLSIAMIVDDVKEKVLEDFESEMGSEDLNEDYEEYDDDEDYDGE
YNYDEEEEEIERDYRRSSDNGGKSAAPIDQLNNLSFNGDEYNSDDDEEGEFSEYSEEDTV
NQFIVDDDHMVQVIEGTLSLNNEKGKKKIQSKTLLRQILGNLKDGDSPKETIIIYGLPFH
FSGWRKYIQLEGLRKLVGNAMMAQWQNPLIQKQFGIEIPEGNRLREAKYQLKRSISQKKK
ADYDRSVRSESTLFENNAAN*flink*k*****f*fk*fnllsl*lekvfsifififf*e
kkkkksknf


Frame C:
kkkkkkkkkkfiilfnktytyntyfnykytqllnnkifkk*i*ekkrkpvidqqlqsikh
*mkkienlitfyhy*kkrkqvlyqmqsii*iiflhinlkeknklakifsklyanslqmvs
lanwinpknlvnvlv*ya*rlekimnstvilkphslql*pmvkltlkimn*wlqsmryls
hvsivvlivtliniqfpyskiyyihkkkkifkinyyqlgyyy*qelilkk*qiikwfyqd
*lnyqnhhhkmldylhh*vlq*llmmlkkkywkilkvkwvvki*mkimknmmmmkimmvn
iimmkkkkrskgiieevvimevnqqhqlin*ii*vlmvmniiammmrkvnlvnivkriq*
insl*tmiiwykllkeplv*imkrvrkkfnpkhcyvkslei*rmvihqkklsssmvyhsi
svvgesisnwkvyvnslvml*wlngkih*fknnlvlkflkviv*ekpntn*kdqslkrkk
qtmidqfvqkvlylkimlpinf**inknnnnnsfnlnnlifslyd*kkysqflflfffrk
kkkknqkil

Query= Contig-U15329-1 (Contig-U15329-1Q)
/CSM_Contig/Contig-U15329-1Q.Seq.d
         (1649 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15329-1 (Contig-U15329-1Q) /CSM_Contig/Conti...  1086  0.0
Contig-U11312-1 (Contig-U11312-1Q) /CSM_Contig/Conti...    50  1e-05
Contig-U12562-1 (Contig-U12562-1Q) /CSM_Contig/Conti...    44  7e-04
Contig-U09227-1 (Contig-U09227-1Q) /CSM_Contig/Conti...    44  7e-04
Contig-U05305-1 (Contig-U05305-1Q) /CSM_Contig/Conti...    44  7e-04
Contig-U15589-1 (Contig-U15589-1Q) /CSM_Contig/Conti...    38  0.042
Contig-U12542-1 (Contig-U12542-1Q) /CSM_Contig/Conti...    38  0.042
Contig-U06787-1 (Contig-U06787-1Q) /CSM_Contig/Conti...    38  0.042
Contig-U05044-1 (Contig-U05044-1Q) /CSM_Contig/Conti...    38  0.042
Contig-U01919-1 (Contig-U01919-1Q) /CSM_Contig/Conti...    38  0.042

>Contig-U15329-1 (Contig-U15329-1Q) /CSM_Contig/Contig-U15329-1Q.Seq.d
          Length = 1649

 Score = 1086 bits (548), Expect = 0.0
 Identities = 562/569 (98%)
 Strand = Plus / Plus

                                                                        
Query: 917  gaagaagaagagatcgaaagggattatagaagaagtagtgataatggaggtaaatcagca 976
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917  gaagaagaagagatcgaaagggattatagaagaagtagtgataatggaggtaaatcagca 976

                                                                        
Query: 977  gcaccaattgatcaattaaataatttaagttttaatggtgatgaatataatagcgatgat 1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977  gcaccaattgatcaattaaataatttaagttttaatggtgatgaatataatagcgatgat 1036

                                                                        
Query: 1037 gatgaggaaggtgaatttagtgaatatagtgaagaggatacagtgaatcaattcattgta 1096
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 gatgaggaaggtgaatttagtgaatatagtgaagaggatacagtgaatcaattcattgta 1096

                                                                        
Query: 1097 gacgatgatcatatggtacaagttattgaaggaacccttagtttaaataatgaaaagggt 1156
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1097 gacgatgatcatatggtacaagttattgaaggaacccttagtttaaataatgaaaagggt 1156

                                                                        
Query: 1157 aagnnnnnnnttcaatccaaaacattgttacgtcaaatccttggaaatttaaaggatggt 1216
            |||       ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1157 aagaaaaaaattcaatccaaaacattgttacgtcaaatccttggaaatttaaaggatggt 1216

                                                                        
Query: 1217 gattcaccaaaagaaactatcatcatctatggtttaccattccatttcagtggttggaga 1276
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1217 gattcaccaaaagaaactatcatcatctatggtttaccattccatttcagtggttggaga 1276

                                                                        
Query: 1277 aagtatatccaattggaaggtttacgtaaactcgttggtaatgctatgatggctcaatgg 1336
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1277 aagtatatccaattggaaggtttacgtaaactcgttggtaatgctatgatggctcaatgg 1336

                                                                        
Query: 1337 caaaatccattaattcaaaaacaatttggtattgaaattcctgaaggtaatcgtttaaga 1396
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1337 caaaatccattaattcaaaaacaatttggtattgaaattcctgaaggtaatcgtttaaga 1396

                                                                        
Query: 1397 gaagccaaataccaattaaaaagatcaatctctcaaaagaaaaaagcagactatgataga 1456
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1397 gaagccaaataccaattaaaaagatcaatctctcaaaagaaaaaagcagactatgataga 1456

                                         
Query: 1457 tcagttcgttcagaaagtactttatttga 1485
            |||||||||||||||||||||||||||||
Sbjct: 1457 tcagttcgttcagaaagtactttatttga 1485


 Score =  944 bits (476), Expect = 0.0
 Identities = 476/476 (100%)
 Strand = Plus / Plus

                                                                       
Query: 142 gaaaaccagtcatagatcaacagttgcagtccataaagcactaaatgaaaaagatagaga 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 gaaaaccagtcatagatcaacagttgcagtccataaagcactaaatgaaaaagatagaga 201

                                                                       
Query: 202 atttaattactttttaccattattaaaagaaaagaaaacaagtattgtatcaaatgcaat 261
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 atttaattactttttaccattattaaaagaaaagaaaacaagtattgtatcaaatgcaat 261

                                                                       
Query: 262 caataatttaaattatattcttacatatcaatctgaaagagaagaacaagttagcaaaga 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 caataatttaaattatattcttacatatcaatctgaaagagaagaacaagttagcaaaga 321

                                                                       
Query: 322 tattctcgaagctttatgccaactctttacaaatggtgtctctggcaaattggataaacc 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tattctcgaagctttatgccaactctttacaaatggtgtctctggcaaattggataaacc 381

                                                                       
Query: 382 cgaagaacttggtaaatgtattggtttagtatgcttaaagactggagaaaataatgaatt 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cgaagaacttggtaaatgtattggtttagtatgcttaaagactggagaaaataatgaatt 441

                                                                       
Query: 442 ctaccgttatattaaaaccacactctcttcaattataaccgatggtgaagctcacattaa 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctaccgttatattaaaaccacactctcttcaattataaccgatggtgaagctcacattaa 501

                                                                       
Query: 502 agataatgaattaatggctgcaatctatgcgctatctcagtcatgtttctattgttgtac 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 agataatgaattaatggctgcaatctatgcgctatctcagtcatgtttctattgttgtac 561

                                                                   
Query: 562 tgatcgtgactcttataaacatacaatttccttattccaagatttattatatacac 617
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgatcgtgactcttataaacatacaatttccttattccaagatttattatatacac 617


 Score =  442 bits (223), Expect = e-124
 Identities = 223/223 (100%)
 Strand = Plus / Plus

                                                                       
Query: 631 tattcaagataaattattatcagcttggttattattattaacaagagttaatcctcaaga 690
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tattcaagataaattattatcagcttggttattattattaacaagagttaatcctcaaga 690

                                                                       
Query: 691 aatgacaaattataaaatggttttaccaagattaattgaattatcaaaatcatcatcaca 750
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 aatgacaaattataaaatggttttaccaagattaattgaattatcaaaatcatcatcaca 750

                                                                       
Query: 751 aaatgttagattatctgcatcattgagtattgcaatgattgttgatgatgttaaagaaaa 810
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 aaatgttagattatctgcatcattgagtattgcaatgattgttgatgatgttaaagaaaa 810

                                                      
Query: 811 agtattggaagattttgaaagtgaaatgggtagtgaagattta 853
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 agtattggaagattttgaaagtgaaatgggtagtgaagattta 853


 Score = 67.9 bits (34), Expect = 5e-11
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                              
Query: 1562 cttctctctctatgattagaaaaagtattctcaa 1595
            ||||||||||||||||||||||||||||||||||
Sbjct: 1562 cttctctctctatgattagaaaaagtattctcaa 1595


>Contig-U11312-1 (Contig-U11312-1Q) /CSM_Contig/Contig-U11312-1Q.Seq.d
          Length = 2246

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                         
Query: 1347 taattcaaaaacaatttggtattgaaatt 1375
            ||||||||||||||||||||||| |||||
Sbjct: 719  taattcaaaaacaatttggtattcaaatt 747


>Contig-U12562-1 (Contig-U12562-1Q) /CSM_Contig/Contig-U12562-1Q.Seq.d
          Length = 1422

 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 250 atcaaatgcaatcaataattta 271
           ||||||||||||||||||||||
Sbjct: 612 atcaaatgcaatcaataattta 591


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 50,250
Number of Sequences: 8402
Number of extensions: 50250
Number of successful extensions: 4768
Number of sequences better than 10.0: 168
length of query: 1649
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1633
effective length of database: 7,941,110
effective search space: 12967832630
effective search space used: 12967832630
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)

Query= Contig-U15329-1 (Contig-U15329-1Q) /CSM_Contig/Contig-U15329-1Q.Seq.d
         (1649 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ400064) Dictyostelium discoideum cDNA clone:dds8o13, 3' e...   630   0.0    2
(BJ399929) Dictyostelium discoideum cDNA clone:dds8h01, 3' e...   628   0.0    2
(BJ376059) Dictyostelium discoideum cDNA clone:ddc21f04, 3' ...   628   0.0    2
(BJ339836) Dictyostelium discoideum cDNA clone:dda10h18, 3' ...   628   0.0    2
(BJ430484) Dictyostelium discoideum cDNA clone:ddv7m10, 3' e...   626   0.0    2
(BJ401703) Dictyostelium discoideum cDNA clone:dds19k03, 3' ...   626   0.0    2
(BJ350002) Dictyostelium discoideum cDNA clone:dda38i11, 3' ...   626   0.0    2
(BJ343544) Dictyostelium discoideum cDNA clone:dda16l10, 3' ...   626   0.0    2
(BJ376381) Dictyostelium discoideum cDNA clone:ddc28e10, 3' ...   622   0.0    2
(BJ347544) Dictyostelium discoideum cDNA clone:dda27l12, 3' ...   618   0.0    2
(BJ345013) Dictyostelium discoideum cDNA clone:dda21f12, 3' ...   618   0.0    2
(BJ343202) Dictyostelium discoideum cDNA clone:dda22h10, 3' ...   618   0.0    2
(BJ373638) Dictyostelium discoideum cDNA clone:ddc4a07, 3' e...   613   0.0    2
(BJ341830) Dictyostelium discoideum cDNA clone:dda8i11, 3' e...   611   0.0    2
(BJ401600) Dictyostelium discoideum cDNA clone:dds23e23, 3' ...   609   0.0    2
(BJ372732) Dictyostelium discoideum cDNA clone:ddc13j24, 3' ...   609   0.0    2
(C84084) Dictyostelium discoideum slug cDNA, clone SSC735.        605   0.0    3
(BJ341847) Dictyostelium discoideum cDNA clone:dda8n10, 3' e...   601   0.0    3
(BJ375778) Dictyostelium discoideum cDNA clone:ddc19n23, 3' ...   561   0.0    4
(C91458) Dictyostelium discoideum slug cDNA, clone SSK305.        545   0.0    3
(BJ374833) Dictyostelium discoideum cDNA clone:ddc16p07, 3' ...   603   0.0    2
(BJ373215) Dictyostelium discoideum cDNA clone:ddc1p24, 3' e...   585   0.0    3
(BJ374849) Dictyostelium discoideum cDNA clone:ddc16d13, 3' ...   609   0.0    2
(BJ373750) Dictyostelium discoideum cDNA clone:ddc4g24, 3' e...   561   0.0    3
(BJ401379) Dictyostelium discoideum cDNA clone:dds23e05, 3' ...   529   0.0    2
(BJ389540) Dictyostelium discoideum cDNA clone:dds19k03, 5' ...   934   0.0    1
(BJ363749) Dictyostelium discoideum cDNA clone:ddc28e10, 5' ...   934   0.0    1
(BJ362057) Dictyostelium discoideum cDNA clone:ddc19n23, 5' ...   934   0.0    1
(BJ360842) Dictyostelium discoideum cDNA clone:ddc8p03, 5' e...   934   0.0    1
(BJ359320) Dictyostelium discoideum cDNA clone:ddc13j24, 5' ...   934   0.0    1
(BJ358524) Dictyostelium discoideum cDNA clone:ddc1p24, 5' e...   934   0.0    1
(BJ332217) Dictyostelium discoideum cDNA clone:dda38i11, 5' ...   934   0.0    1
(BJ330108) Dictyostelium discoideum cDNA clone:dda27l12, 5' ...   934   0.0    1
(BJ327951) Dictyostelium discoideum cDNA clone:dda22h10, 5' ...   934   0.0    1
(BJ323789) Dictyostelium discoideum cDNA clone:dda12c07, 5' ...   934   0.0    1
(AU263475) Dictyostelium discoideum vegetative cDNA clone:VS...   926   0.0    1
(BJ412220) Dictyostelium discoideum cDNA clone:ddv7m10, 5' e...   926   0.0    1
(BJ324847) Dictyostelium discoideum cDNA clone:dda8i11, 5' e...   904   0.0    1
(BJ327664) Dictyostelium discoideum cDNA clone:dda21f12, 5' ...   892   0.0    1
(BJ388264) Dictyostelium discoideum cDNA clone:dds8o13, 5' e...   888   0.0    1
(BJ390810) Dictyostelium discoideum cDNA clone:dds23e23, 5' ...   884   0.0    1
(BJ361259) Dictyostelium discoideum cDNA clone:ddc16p07, 5' ...   876   0.0    1
(AU052912) Dictyostelium discoideum slug cDNA, clone SLF309.      630   0.0    3
(AU284698) Dictyostelium discoideum gamete cDNA clone:FC-BH1...   870   0.0    1
(BJ362508) Dictyostelium discoideum cDNA clone:ddc22l01, 5' ...   827   0.0    2
(BJ361100) Dictyostelium discoideum cDNA clone:ddc9i19, 5' e...   815   0.0    2
(BJ361277) Dictyostelium discoideum cDNA clone:ddc16d13, 5' ...   842   0.0    1
(BJ360093) Dictyostelium discoideum cDNA clone:ddc4a07, 5' e...   805   0.0    1
(BJ326418) Dictyostelium discoideum cDNA clone:dda16l10, 5' ...   805   0.0    1
(BJ373868) Dictyostelium discoideum cDNA clone:ddc5j06, 3' e...   392   0.0    4
(BJ360841) Dictyostelium discoideum cDNA clone:ddc8p01, 5' e...   803   0.0    1
(BJ388133) Dictyostelium discoideum cDNA clone:dds8h01, 5' e...   613   e-171  1
(BJ399025) Dictyostelium discoideum cDNA clone:dds3n14, 3' e...   563   e-156  1
(BJ374220) Dictyostelium discoideum cDNA clone:ddc6e02, 3' e...   476   e-151  2
(BJ340239) Dictyostelium discoideum cDNA clone:dda12c07, 3' ...   500   e-136  1
(BJ362264) Dictyostelium discoideum cDNA clone:ddc21f04, 5' ...   474   e-129  1
(AU061666) Dictyostelium discoideum slug cDNA, clone SLF309.      428   e-115  1
(BJ323439) Dictyostelium discoideum cDNA clone:dda10h18, 5' ...   398   e-106  1
(BJ377775) Dictyostelium discoideum cDNA clone:ddc25j22, 3' ...   343   2e-93  2
(BJ360243) Dictyostelium discoideum cDNA clone:ddc5j06, 5' e...   238   6e-58  1
(BJ374501) Dictyostelium discoideum cDNA clone:ddc8p03, 3' e...   131   2e-45  2
(AU071916) Dictyostelium discoideum slug cDNA, clone SSC735.      186   2e-42  1
(AU284699) Dictyostelium discoideum gamete cDNA clone:FC-BH1...    68   1e-07  2
(AL049778) Human chromosome 14 DNA sequence BAC R-643C12 of ...    36   0.026  7
(AJ755754) Gerbera hybrid cv. 'Terra Regina' EST, clone G000...    36   0.058  2
(BJ336338) Dictyostelium discoideum cDNA clone:dda53e17, 5' ...    50   0.097  2
(AC091721) Pan troglodytes clone RP43-97L19, WORKING DRAFT S...    38   0.10   5
(AC146040) Pan troglodytes BAC clone RP43-97N16 from chromos...    38   0.10   5
(AC183420) Populus trichocarpa clone Pop1-23K9, complete seq...    40   0.15   7
(AC139053) Mus musculus chromosome 1, clone RP23-2I19, compl...    50   0.28   1
(DV771049) McClintock11_C08.ab1 Homarus EST library project ...    40   0.32   2
(EJ790872) 1093017376809 Global-Ocean-Sampling_GS-30-02-01-1...    38   0.42   2
(EJ789206) 1093017368544 Global-Ocean-Sampling_GS-30-02-01-1...    38   0.44   2
(CL109511) ISB1-51L2_T7.1 ISB1 Xenopus (Silurana) tropicalis...    34   0.45   4
(AC064862) Homo sapiens BAC clone RP11-368M16 from 7, comple...    38   0.64   3
(AC006978) Homo sapiens BAC clone GS1-66B6 from 7, complete ...    36   0.66   4
(AC212688) Pongo abelii chromosome UNKNOWN clone CH276-38I20...    40   0.69   6
(AL121958) Human DNA sequence from clone RP1-71H19 on chromo...    36   0.81   10
(AC108733) Homo sapiens 3 BAC RP11-789F5 (Roswell Park Cance...    40   0.92   7
(CG745053) P037-4-D05.za Ppa EcoRI BAC Library Pristionchus ...    40   0.95   3
(AC112875) Rattus norvegicus clone CH230-229J15, *** SEQUENC...    48   1.1    1
(DX280674) OR_ABa0180C03.f OR_ABa Oryza ridleyi genomic clon...    48   1.1    1
(DX249630) OR_ABa0137C08.f OR_ABa Oryza ridleyi genomic clon...    48   1.1    1
(BY454822) Mus musculus cDNA, RIKEN full-length enriched lib...    48   1.1    1
(BS000553) Pan troglodytes chromosome Y clone:PTB-310C12, co...    36   1.2    3
(BJ425946) Dictyostelium discoideum cDNA clone:ddv57i16, 5' ...    46   1.3    2
(AC195509) Pan troglodytes chromosome 15 clone CH251-738K7, ...    36   1.6    6
(EJ743325) 1092962035829 Global-Ocean-Sampling_GS-30-02-01-1...    44   1.7    2
(DX541699) GH_MBb0037F12r GH_MBb Gossypium hirsutum genomic ...    34   1.7    3
(EJ750684) 1092963032643 Global-Ocean-Sampling_GS-30-02-01-1...    44   1.8    2
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    34   1.8    12
(AC097633) Homo sapiens chromosome 3 clone RP11-96F15, compl...    38   1.9    3
(AL844509) Plasmodium falciparum chromosome 13.                    38   2.4    14
(CU469147) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.4    4
(AC146258) Pan troglodytes chromosome UNK clone CH251-114N21...    36   2.5    8
(AY916779) Homo sapiens membrane cofactor protein (CD46, tro...    36   2.7    4
(CK984455) re37f04.y1 Meloidogyne incognita J3 J4 SL1 pGEM M...    34   3.0    2
(AC147289) Pan troglodytes BAC clone RP43-75A12 from chromos...    36   3.3    9
(AC004158) Homo sapiens Chromosome 16 BAC clone CIT987SK-A-1...    44   3.5    5
(CR931738) Medicago truncatula chromosome 5 clone mth2-56k10...    36   3.7    6

>(BJ400064) Dictyostelium discoideum cDNA clone:dds8o13, 3' end,
            single read.
          Length = 711

 Score =  630 bits (318), Expect(2) = 0.0
 Identities = 318/318 (100%)
 Strand = Plus / Minus


Query: 1167 ttcaatccaaaacattgttacgtcaaatccttggaaatttaaaggatggtgattcaccaa 1226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371  ttcaatccaaaacattgttacgtcaaatccttggaaatttaaaggatggtgattcaccaa 312


Query: 1227 aagaaactatcatcatctatggtttaccattccatttcagtggttggagaaagtatatcc 1286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311  aagaaactatcatcatctatggtttaccattccatttcagtggttggagaaagtatatcc 252


Query: 1287 aattggaaggtttacgtaaactcgttggtaatgctatgatggctcaatggcaaaatccat 1346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251  aattggaaggtttacgtaaactcgttggtaatgctatgatggctcaatggcaaaatccat 192


Query: 1347 taattcaaaaacaatttggtattgaaattcctgaaggtaatcgtttaagagaagccaaat 1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191  taattcaaaaacaatttggtattgaaattcctgaaggtaatcgtttaagagaagccaaat 132


Query: 1407 accaattaaaaagatcaatctctcaaaagaaaaaagcagactatgatagatcagttcgtt 1466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131  accaattaaaaagatcaatctctcaaaagaaaaaagcagactatgatagatcagttcgtt 72


Query: 1467 cagaaagtactttatttg 1484
            ||||||||||||||||||
Sbjct: 71   cagaaagtactttatttg 54

 Score =  454 bits (229), Expect(2) = 0.0
 Identities = 229/229 (100%)
 Strand = Plus / Minus


Query: 931  cgaaagggattatagaagaagtagtgataatggaggtaaatcagcagcaccaattgatca 990
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607  cgaaagggattatagaagaagtagtgataatggaggtaaatcagcagcaccaattgatca 548


Query: 991  attaaataatttaagttttaatggtgatgaatataatagcgatgatgatgaggaaggtga 1050
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547  attaaataatttaagttttaatggtgatgaatataatagcgatgatgatgaggaaggtga 488


Query: 1051 atttagtgaatatagtgaagaggatacagtgaatcaattcattgtagacgatgatcatat 1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487  atttagtgaatatagtgaagaggatacagtgaatcaattcattgtagacgatgatcatat 428


Query: 1111 ggtacaagttattgaaggaacccttagtttaaataatgaaaagggtaag 1159
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427  ggtacaagttattgaaggaacccttagtttaaataatgaaaagggtaag 379

 Score = 99.6 bits (50), Expect(2) = 3e-21
 Identities = 50/50 (100%)
 Strand = Plus / Minus


Query: 762 tatctgcatcattgagtattgcaatgattgttgatgatgttaaagaaaaa 811
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tatctgcatcattgagtattgcaatgattgttgatgatgttaaagaaaaa 662

 Score = 36.2 bits (18), Expect(2) = 3e-21
 Identities = 18/18 (100%)
 Strand = Plus / Minus


Query: 807 aaaaagtattggaagatt 824
           ||||||||||||||||||
Sbjct: 665 aaaaagtattggaagatt 648

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,714,275,814
Number of extensions: 117225361
Number of successful extensions: 10337851
Number of sequences better than 10.0: 167
Length of query: 1649
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1625
Effective length of database: 100,704,341,533
Effective search space: 163644554991125
Effective search space used: 163644554991125
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U15329-1 (Contig-U15329-1Q) /CSM_Contig/Contig-U15329-1Q.Seq.d
         (1649 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT039425_1(BT039425|pid:none) Zea mays full-length cDNA clone ZM...    46   0.005
BT039414_1(BT039414|pid:none) Zea mays full-length cDNA clone ZM...    45   0.006
BC123031_1(BC123031|pid:none) Xenopus tropicalis interferon-rela...    44   0.023
AK099482_1(AK099482|pid:none) Oryza sativa Japonica Group cDNA c...    42   0.086
BC104631_1(BC104631|pid:none) Bos taurus interferon-related deve...    41   0.15
BC001327_1(BC001327|pid:none) Homo sapiens interferon-related de...    40   0.25
U09585_1(U09585|pid:none) Homo sapiens putative interferon-relat...    40   0.25
BT065557_1(BT065557|pid:none) Zea mays full-length cDNA clone ZM...    40   0.25
BT037216_1(BT037216|pid:none) Zea mays full-length cDNA clone ZM...    40   0.25
AY888429_1(AY888429|pid:none) Synthetic construct Homo sapiens c...    40   0.25
AY298860_1(AY298860|pid:none) Mus musculus IRFD2 (Ifrd2) mRNA, p...    39   0.43
AK074763_1(AK074763|pid:none) Homo sapiens cDNA FLJ90282 fis, cl...    39   0.43
FN357297_55(FN357297|pid:none) Schistosoma mansoni genome sequen...    39   0.43
CP000553_1667(CP000553|pid:none) Prochlorococcus marinus str. NA...    37   1.6
CR380959_190(CR380959|pid:none) Candida glabrata strain CBS138 c...    37   1.6
AP004996_15(AP004996|pid:none) Oryza sativa Japonica Group genom...    36   3.6
AK002702_1(AK002702|pid:none) Mus musculus adult male kidney cDN...    36   4.7
CP001348_951(CP001348|pid:none) Clostridium cellulolyticum H10, ...    35   6.2
EU195889_1(EU195889|pid:none) Lymphocytic choriomeningitis virus...    35   8.1
EU016592_31(EU016592|pid:none) Uncultured Group I marine crenarc...    35   8.1

>BT039425_1(BT039425|pid:none) Zea mays full-length cDNA clone
            ZM_BFc0012O11 mRNA, complete cds.
            &EU966624_1(EU966624|pid:none)
          Length = 434

 Score = 45.8 bits (107), Expect = 0.005
 Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 10/131 (7%)
 Frame = +2

Query: 1082 NQFIVDDDHMVQVIEGTLS-LNNEKGKKKIQSKTLLRQ------ILGNLKDGDSPKETII 1240
            N+  +D   +   I G  S L+ E G K    K L  Q      IL  +K GD P+E+I
Sbjct: 283  NKLFLDMQALKAKISGLASNLSAEAGGKGADKKNLTDQRDLFQRILDFVKYGDCPEESIK 342

Query: 1241 IYGLP--FHFSGWRKYIQLEGLRKLVGNAMMAQWQ-NPLIQKQFGIEIPEGNRLREAKYQ 1411
            I G       S W + IQL  L++ +G   +   Q N L+Q  F I++ +   L     +
Sbjct: 343  IAGKRDVLRVSSWSELIQLNFLKRFLGKGFLKHVQENGLLQDIFDIKVDKTETLSSTDKK 402

Query: 1412 LKRSISQKKKA 1444
            + RS  +K++A
Sbjct: 403  IFRSEEEKERA 413

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,930,950,681
Number of extensions: 35888804
Number of successful extensions: 97225
Number of sequences better than 10.0: 20
Number of HSP's gapped: 97189
Number of HSP's successfully gapped: 20
Length of query: 549
Length of database: 1,051,180,864
Length adjustment: 134
Effective length of query: 415
Effective length of database: 617,481,958
Effective search space: 256255012570
Effective search space used: 256255012570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

 psg: 0.68  gvh: 0.32  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.03
 nuc: 0.03  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for Contig-U15329-1 is nuc