Contig-U15319-1 |
Contig ID |
Contig-U15319-1 |
Contig update |
2004. 6.11 |
Contig sequence |
|
Gap |
no gap |
Contig length |
1503 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
5156624 |
End point |
5155375 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
4 |
Number of EST |
4 |
Link to clone list |
U15319 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
|
dna update |
2009. 1.19 |
Homology vs DNA |
Query= Contig-U15319-1 (Contig-U15319-1Q) /CSM_Contig/Contig-U15319-1Q.Seq.d (1503 letters)
Database: ddbj_B 98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 1582 0.0 1 (BJ346746) Dictyostelium discoideum cDNA clone:dda24l20, 3' ... 1245 0.0 1 (BJ375811) Dictyostelium discoideum cDNA clone:ddc20e06, 3' ... 1172 0.0 1 (BJ350958) Dictyostelium discoideum cDNA clone:dda41f17, 3' ... 1172 0.0 1 (BJ344964) Dictyostelium discoideum cDNA clone:dda21l02, 3' ... 1082 0.0 1 (BJ362083) Dictyostelium discoideum cDNA clone:ddc20e06, 5' ... 745 0.0 2 (C94243) Dictyostelium discoideum slug cDNA, clone SSK585. 963 0.0 1 (BJ373317) Dictyostelium discoideum cDNA clone:ddc2a22, 3' e... 842 0.0 2 (AU060923) Dictyostelium discoideum slug cDNA, clone SLC248. 478 0.0 2 (BJ373003) Dictyostelium discoideum cDNA clone:ddc15d12, 3' ... 815 0.0 1 (AU034199) Dictyostelium discoideum slug cDNA, clone SLC248. 726 0.0 1 (AU074400) Dictyostelium discoideum slug cDNA, clone SSK585. 476 e-129 1 (AU053855) Dictyostelium discoideum slug cDNA, clone SLJ809. 194 7e-45 1 (EX266810) 1447411_5_I01_007 PY06 Carica papaya cDNA, mRNA s... 86 6e-20 3 (EL354196) CCEM10859.b1_F03.ab1 CCE(LMS) endive Cichorium en... 58 6e-18 4 (AY122274) Zea mays cultivar B73 histone acetyltransferase p... 56 8e-17 5 (EX123475) BR107305 mature green leaf cDNA library KHLM Bras... 60 8e-16 4 (DT751965) EST1185814 Aquilegia cDNA library Aquilegia formo... 62 2e-15 4 (ES850428) UFL_683_54 Cotton fiber 0-10 day post anthesis Go... 44 2e-15 5 (FC192167) CAAD1672.fwd CAAD Nematostella vectensis nemve_P1... 62 3e-15 2 (FC323015) CAIC8945.fwd CAIC Nematostella vectensis Nemve wh... 62 3e-15 2 (FC243618) CAGH2664.fwd CAGH Nematostella vectensis Nemve La... 62 4e-15 2 (FC286105) CAGN3168.fwd CAGN Nematostella vectensis Nemve mi... 62 4e-15 2 (EH724361) CNMM10780.b1_G07.ab1 CNM(LMS) spotted knapweed Ce... 54 1e-14 4 (ES791711) UFL_492_73 Cotton fiber 0-10 day post anthesis Go... 72 1e-13 4 (AY104613) Zea mays PCO097531 mRNA sequence. 48 2e-13 5 (DV505148) ZM_BFb0182F16.r ZM_BFb Zea mays cDNA 5', mRNA seq... 48 2e-13 5 (EY875291) CL06-C4-501-039-F11-CT.F Rangpur lime root, plant... 78 3e-13 2 (CK650568) m.13.H5.5 MPer183 cassava lambda zap Manihot escu... 74 6e-13 2 (EL411898) CFFS9512.b1_P02.ab1 CFF(LMS) safflower Carthamus ... 54 7e-13 4 (EG974830) GLL020_D01_005 Cyamopsis tetragonoloba (L.) Taub ... 66 8e-13 2 (ES436774) EST1236980 ESTSYN-L Musa acuminata AAA Group cDNA... 68 1e-12 3 (AL396528) T7 end of clone AR0AA030H06 of library AR0AA from... 40 1e-12 5 (BT016729) Zea mays clone Contig562 mRNA sequence. 56 1e-12 4 (DW118760) CLRY7383.b1_M21.ab1 CLR(XYZ) lettuce serriola Lac... 50 2e-12 3 (BT040127) Zea mays full-length cDNA clone ZM_BFc0066L12 mRN... 48 3e-12 5 (EH695569) CCIM7405.b1_J03.ab1 CCI(LMS) chicory Cichorium in... 54 3e-12 4 (AF440220) Zea mays cultivar Ohio43 histone aceytl-transfera... 48 3e-12 5 (EL478722) CHUL7255.b1_N14.ab1 CHU(LMS) puzzle sunflower Hel... 72 3e-12 2 (EL480423) CHUM2410.b1_D03.ab1 CHU(LMS) puzzle sunflower Hel... 72 3e-12 2 (EY798275) CR05-C3-701-064-H01-CT.F Mandarin fruit, developm... 78 3e-12 2 (GE516281) CCFU1359.b1_M04.ab1 CCF(STU) sunflower Helianthus... 72 3e-12 2 (EL460864) CHTS15496.b1_P09.ab1 CHT(LMS) Jerusalem artichoke... 72 3e-12 2 (EY772709) CR05-C1-102-077-E03-CT.F Mandarin leaf, infected ... 78 3e-12 2 (EY772797) CR05-C1-102-079-D12-CT.F Mandarin leaf, infected ... 78 4e-12 2 (CN997685) Mdfw2053m05.y1 Mdfw Malus x domestica cDNA clone ... 68 8e-12 3 (CN913359) 030107ABMA006419HT (ABMA) M9 phloem Malus x domes... 68 9e-12 3 (BU763538) sas44c04.y1 Gm-c1080 Glycine max cDNA clone SOYBE... 74 9e-12 2 (CN918413) 030205ABPB005073HT (ABPB) M9 root tips Malus x do... 68 1e-11 3 (GE590421) CCPW14454.b1_K14.ab1 CCP(UWX) Globe Artichoke Cyn... 72 1e-11 2 (DR991979) Mdlr7009O04.g1 Apple_EST_Mdlr Malus x domestica c... 68 1e-11 3 (GE590517) CCPW14544.b1_P12.ab1 CCP(UWX) Globe Artichoke Cyn... 72 1e-11 2 (AY346458) Solanum chacoense MYST-type acetyltransferase mRN... 62 2e-11 3 (CK294012) EST756726 Nicotiana benthamiana mixed tissue cDNA... 58 2e-11 3 (DR915079) EST1106618 Aquilegia cDNA library Aquilegia formo... 62 2e-11 3 (CK281971) EST744693 Nicotiana benthamiana mixed tissue cDNA... 58 2e-11 3 (DT734554) EST1168404 Aquilegia cDNA library Aquilegia formo... 62 2e-11 3 (BM108159) a09g08 cDNA Peking library 2D SCN3 Glycine max cD... 72 3e-11 2 (EB142065) 010812AASB002284HT (AASB) Royal Gala 10 DAFB frui... 68 4e-11 3 (EL592978) 65JKBNMO_UP_077_H01_18JUL2006_001 65JKBNM0 Brassi... 60 4e-11 2 (AW395340) sh46g11.y1 Gm-c1017 Glycine max cDNA clone GENOME... 66 4e-11 3 (EH764954) CNSM10980.b1_G10.ab1 CNS(LMS) yellow starthistle ... 54 7e-11 3 (CK247742) EST731379 potato callus cDNA library, normalized ... 62 7e-11 3 (DV677126) CGN-14380 Pericarp Coffea canephora cDNA clone cc... 54 8e-11 3 (EH728375) CNMM14831.b1_M12.ab1 CNM(LMS) spotted knapweed Ce... 54 1e-10 4 (BU046386) PP_LEa0026A17f Peach developing fruit mesocarp Pr... 78 1e-10 2 (FG200136) AGN_PNL229cr1_e5.trimmed.seq AGN_PNL Nicotiana ta... 58 2e-10 2 (EV202817) 0103970 Brassica napus Cold acclimation - light B... 60 2e-10 2 (CV476127) 24802.1 Developing Tubers Solanum tuberosum cDNA ... 62 3e-10 3 (CV167075) rsmsxl_007334.y1.scf cDNA Library of Salvia milti... 50 3e-10 3 (CK255985) EST739622 potato callus cDNA library, normalized ... 62 3e-10 3 (GD760890) 454GmaGlobSeed503539 Soybean Seeds Containing Glo... 66 9e-10 2 (EE260888) A11_A11ff1m21_pDNRf_501636 Myzus persicae, line F... 60 1e-09 3 (CA801909) sat19c06.y1 Gm-c1036 Glycine max cDNA clone SOYBE... 58 1e-09 3 (DY270712) KN0AAP7YH24FM1 Fruit-TF Citrus clementina cDNA 5'... 78 1e-09 1 (CX304929) C16017C06SK ExocortL1 Citrus medica cDNA clone C1... 78 1e-09 1 (CX048048) UCRCS09_18D09_g Ruby Orange Developing Seed cDNA ... 78 1e-09 1 (CN190944) UCRCS06_0004E24_f Washington Navel Orange Stored ... 78 1e-09 1 (CF836675) UCRCS03_03G04_f Washington Navel Orange Shoot Mer... 78 1e-09 1 (CD574235) UCRPT01_04_H01_T7 Poncirus trifoliata CTV-challen... 78 1e-09 1 (EY874976) CL06-C4-501-032-F07-CT.F Rangpur lime root, plant... 78 1e-09 1 (EY874504) CL06-C4-501-023-D07-CT.F Rangpur lime root, plant... 78 1e-09 1 (EY674533) CS00-C1-102-103-B01-CT.F Sweet orange leaf, infec... 78 1e-09 1 (EY672566) CS00-C1-102-101-F04-CT.F Sweet orange leaf, infec... 78 1e-09 1 (EX228644) PY01054X1B09.f1 PY01 Carica papaya cDNA, mRNA seq... 48 2e-09 3 (CO904041) Mddb5024n17.y1 Mddb Malus x domestica cDNA clone ... 68 2e-09 2 (CU430759) Clytia hemisphaerica 5-PRIME EST from clone SA0AA... 52 2e-09 4 (FG988025) GLLCC83TF JCVI-SOY1 Glycine max cDNA 5', mRNA seq... 58 3e-09 3 (CF024380) QBS4f06.xg QBS Zea mays cDNA clone QBS4f06, mRNA ... 48 3e-09 4 (DV505147) ZM_BFb0182F16.f ZM_BFb Zea mays cDNA 3', mRNA seq... 48 6e-09 4 (FK018253) GLNCX32TF JCVI-SOY3 Glycine max cDNA 5', mRNA seq... 58 7e-09 3 (CK251988) EST735625 potato callus cDNA library, normalized ... 62 1e-08 2 (CK255304) EST738941 potato callus cDNA library, normalized ... 62 1e-08 2 (CK265529) EST711607 potato abiotic stress cDNA library Sola... 62 1e-08 2 (EV276229) GLMCQ81TF JCVI-SOY2 Glycine max cDNA 5', mRNA seq... 58 1e-08 3 (BG550055) 947080F10.y2 947 - 2 week shoot from Barkan lab Z... 56 1e-08 4 (EV052428) BNSCS3CT_UP_197_C07_13MAY2007_059 Brassica napus ... 64 3e-08 3 (BG549685) 947080F10.y1 947 - 2 week shoot from Barkan lab Z... 56 3e-08 4 (CX661389) V01014G05_558208 Fragaria vesca heat stressed see... 48 3e-08 4 (CK281970) EST744692 Nicotiana benthamiana mixed tissue cDNA... 58 3e-08 2
>(AC116305) Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. Length = 413138
Score = 1582 bits (798), Expect = 0.0 Identities = 798/798 (100%) Strand = Plus / Plus
Query: 439 caataagaaacaaccaccaaaaagaccatctcaaaaaggttcaatggtaatggatgacga 498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 164812 caataagaaacaaccaccaaaaagaccatctcaaaaaggttcaatggtaatggatgacga 164871
Query: 499 ttcaaaactatcagaattggagaaagaacatgaagaaattactaaagtgaagaatattaa 558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 164872 ttcaaaactatcagaattggagaaagaacatgaagaaattactaaagtgaagaatattaa 164931
Query: 559 tgttatagagttgggtcgttatgaaattgacacatggtatttctcaccctatccagagga 618 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 164932 tgttatagagttgggtcgttatgaaattgacacatggtatttctcaccctatccagagga 164991
Query: 619 gtttacaaaaactgataaactgtacctctgtgagttttgtttgaaatatatgaagaaaaa 678 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 164992 gtttacaaaaactgataaactgtacctctgtgagttttgtttgaaatatatgaagaaaaa 165051
Query: 679 gacatctctaaaacgacatgctttgaaatgtgatttgcgtcatccacctggtaatgaaat 738 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 165052 gacatctctaaaacgacatgctttgaaatgtgatttgcgtcatccacctggtaatgaaat 165111
Query: 739 ctataggtctggaaatatatcaatgtttgaggttgacggtaaacgtaaccgtatctattg 798 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 165112 ctataggtctggaaatatatcaatgtttgaggttgacggtaaacgtaaccgtatctattg 165171
Query: 799 tcaaaatcttggattgttagcaaaactatttctagatcataaaactttatactatgatgt 858 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 165172 tcaaaatcttggattgttagcaaaactatttctagatcataaaactttatactatgatgt 165231
Query: 859 ggaaccttttctcttttacattatgaccgaatatgacgaacgtggttgccatatggtcgg 918 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 165232 ggaaccttttctcttttacattatgaccgaatatgacgaacgtggttgccatatggtcgg 165291
Query: 919 ctatttctcaaaggaaaaggaatcacctgatggtaataatttagcttgtattctaacatt 978 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 165292 ctatttctcaaaggaaaaggaatcacctgatggtaataatttagcttgtattctaacatt 165351
Query: 979 accaccctaccaaagaaaaggttttggcaaattattaatttcattctcttatgaactctc 1038 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 165352 accaccctaccaaagaaaaggttttggcaaattattaatttcattctcttatgaactctc 165411
Query: 1039 aaagaaggaaggtaaagttggcacacccgaaaaaccattatcagatttgggtcttctctc 1098 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 165412 aaagaaggaaggtaaagttggcacacccgaaaaaccattatcagatttgggtcttctctc 165471
Query: 1099 ctacagatcatattggactcaagtacttttggaaatcttaaaaactcataaaggaaatct 1158 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 165472 ctacagatcatattggactcaagtacttttggaaatcttaaaaactcataaaggaaatct 165531
Query: 1159 ttcaatcactgatatctccaatatttccgccattagaactgaggatgttatcagcactct 1218 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 165532 ttcaatcactgatatctccaatatttccgccattagaactgaggatgttatcagcactct 165591
Query: 1219 acaatcactcaatctcat 1236 |||||||||||||||||| Sbjct: 165592 acaatcactcaatctcat 165609
Score = 478 bits (241), Expect = e-130 Identities = 241/241 (100%) Strand = Plus / Plus
Query: 135 gtagaagagttttagagaatggtacaattatattttgtgaatggagagaacaacaattta 194 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 164508 gtagaagagttttagagaatggtacaattatattttgtgaatggagagaacaacaattta 164567
Query: 195 ttaaatgtgatattattgaaaagagagaatcagaattaaagaatggaacctatgattatt 254 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 164568 ttaaatgtgatattattgaaaagagagaatcagaattaaagaatggaacctatgattatt 164627
Query: 255 atgtacattaccatgaattcaatcgtcgtttagatgaatgggtgcatgaatcaagaatgg 314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 164628 atgtacattaccatgaattcaatcgtcgtttagatgaatgggtgcatgaatcaagaatgg 164687
Query: 315 atttcagtagagttattgaaaagaaacaaccagtgaatagtataacagcaattaattcac 374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 164688 atttcagtagagttattgaaaagaaacaaccagtgaatagtataacagcaattaattcac 164747
Query: 375 a 375 | Sbjct: 164748 a 164748
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 98226423 Number of Hits to DB: 1,296,259,992 Number of extensions: 77323672 Number of successful extensions: 5900497 Number of sequences better than 10.0: 537 Length of query: 1503 Length of database: 98,766,808,389 Length adjustment: 24 Effective length of query: 1479 Effective length of database: 100,704,341,533 Effective search space: 148941721127307 Effective search space used: 148941721127307 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.15 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
1 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
3 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |