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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15312-1
Contig ID Contig-U15312-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15312-1 (Contig-U15312-1Q) /CSM_Contig/Contig-U15312-1Q.Seq.d
CATTTTTGTTTATTTTTTCTATTTGAAAAAAAAAAAAAAAAAATTAAAAA
TTTTTCTCATTTCATCCAAGTGAAAAACAAATATAAATACAATGACAACA
CAAGTTCCAAAAATTAAATGGGCAGAAAGACCAGACTTTGTTTATATTAC
AATTGAAGCAGATGTTGAATCTCCAGTTGTTAAATTCGAATCAAACAAAA
TTTCATTCGAAGGTAAAGGTAAAGATGGTAAACAATACGCCTTTTCCTAT
GATTTATTCAAAGAAATCGATGCTGATAAATCATCAACTGATTTCAAAAC
AAGCAGATACCCAAGATTAAAATTAGTTAAAAAAGATGCCGGTCCATATT
GGGAACTTTTTATTAAAAGATAAAAAGACAGACAAGTTTGTTGAAACCGA
TTGGACTCTTTGGAAGGATGAAGATGAAGTAGAAGAAAATGAAGATGCTG
GTAAATTCGGTAACTTTGATATGGGTGGCATGGATATGCAACAAATGATG
CAAGGTATGGGTGGTATGGGAGGTATGGGTGGTATGGGAGGTATGGGTGG
TATGGGAGGTATGGGAGGCATGGGAGGTATGCCAGATGGTATGAATTTCG
ATGATATGGATGATATGGAAGATTTAGAAGACAAAGAAGAAGAAGGTGAC
AAAAAGAATACCGAAGAAACTGAAGAAACTAAATTAAACTCTGTTGATTA
AATAAATAGTAATAACACATATTTATATTCCCACTTTATCCCCCAAAATT
TAAAAAATAAAATAAAAATTAAAATAATAGAAAAAAAAAAAAAAAGGGTG
GCNGCTCGCGATCTAGAACTAGTC
Gap no gap
Contig length 824
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 1340837
End point 1340040
Strand (PLUS/MINUS) MINUS
Number of clones 6
Number of EST 6
Link to clone list U15312
List of clone(s) 

est1=SSB806E,1,806
est2=VHC747E,59,539
est3=FC-AR09E,78,780
est4=AHQ729Z,101,748
est5=SSD360E,101,761
est6=SHJ208F,301,623
Translated Amino Acid sequence 
flfifsi*kkkkkn*kffsfhpsekqi*iq*qhkfqklngqkdqtlfilqlkqmlnlqll
nsnqtkfhskvkvkmvnntpfpmiyskksmlinhqliskqadtqd*n*LKKMPVHIGNFL
LKDKKTDKFVETDWTLWKDEDEVEENEDAGKFGNFDMGGMDMQQMMQGMGGMGGMGGMGG
MGGMGGMGGMGGMPDGMNFDDMDDMEDLEDKEEEGDKKNTEETEETKLNSVD*insnnty
lyshfipqnlknkikikiiekkkkrvaardlelv
Translated Amino Acid sequence (All Frames) 
Frame A:
hfclfflfekkkkkiknfshfiqvknkykyndntsskn*mgrktrlclyyn*src*issc
*irikqnfirr*r*rw*tirlfl*fiqrnrc**iin*fqnkqipkikis*krcrsilgtf
y*kikrqtsllkpiglfgrmkmk*kkmkmlvnsvtliwvawicnk*ckvwvvwevwvvwe
vwvvwevweawevcqmv*ismiwmiwki*ktkkkkvtkripkklkkln*tllik*ivith
iyiptlspki*kik*klk**kkkkkgwxlai*n*


Frame B:
ifvyffylkkkkkklkiflissk*ktnintmttqvpkikwaerpdfvyitieadvespvv
kfesnkisfegkgkdgkqyafsydlfkeidadksstdfktsryprlklvkkdagpywelf
ikr*kdrqvc*nrldsleg*r*srrk*rcw*ir*l*ygwhgyatndarygwygrygwygr
ygwygrygrhgryarwyefr*yg*ygrfrrqrrrr*qkeyrrn*rn*iklc*lnk***hi
fifplyppkfkk*nkn*nnrkkkkkggxsrsrts


Frame C:
flfifsi*kkkkkn*kffsfhpsekqi*iq*qhkfqklngqkdqtlfilqlkqmlnlqll
nsnqtkfhskvkvkmvnntpfpmiyskksmlinhqliskqadtqd*n*LKKMPVHIGNFL
LKDKKTDKFVETDWTLWKDEDEVEENEDAGKFGNFDMGGMDMQQMMQGMGGMGGMGGMGG
MGGMGGMGGMGGMPDGMNFDDMDDMEDLEDKEEEGDKKNTEETEETKLNSVD*insnnty
lyshfipqnlknkikikiiekkkkrvaardlelv
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15312-1 (Contig-U15312-1Q)
/CSM_Contig/Contig-U15312-1Q.Seq.d
         (824 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15312-1 (Contig-U15312-1Q) /CSM_Contig/Conti...   912  0.0
Contig-U14906-1 (Contig-U14906-1Q) /CSM_Contig/Conti...   825  0.0
Contig-U11510-1 (Contig-U11510-1Q) /CSM_Contig/Conti...    46  9e-05
Contig-U16542-1 (Contig-U16542-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U16382-1 (Contig-U16382-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U13851-1 (Contig-U13851-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U16126-1 (Contig-U16126-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U16101-1 (Contig-U16101-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U16540-1 (Contig-U16540-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U15846-1 (Contig-U15846-1Q) /CSM_Contig/Conti...    40  0.005

>Contig-U15312-1 (Contig-U15312-1Q) /CSM_Contig/Contig-U15312-1Q.Seq.d
          Length = 824

 Score =  912 bits (460), Expect = 0.0
 Identities = 460/460 (100%)
 Strand = Plus / Plus

                                                                       
Query: 44  ttaaaaatttttctcatttcatccaagtgaaaaacaaatataaatacaatgacaacacaa 103
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  ttaaaaatttttctcatttcatccaagtgaaaaacaaatataaatacaatgacaacacaa 103

                                                                       
Query: 104 gttccaaaaattaaatgggcagaaagaccagactttgtttatattacaattgaagcagat 163
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 gttccaaaaattaaatgggcagaaagaccagactttgtttatattacaattgaagcagat 163

                                                                       
Query: 164 gttgaatctccagttgttaaattcgaatcaaacaaaatttcattcgaaggtaaaggtaaa 223
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 gttgaatctccagttgttaaattcgaatcaaacaaaatttcattcgaaggtaaaggtaaa 223

                                                                       
Query: 224 gatggtaaacaatacgccttttcctatgatttattcaaagaaatcgatgctgataaatca 283
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 gatggtaaacaatacgccttttcctatgatttattcaaagaaatcgatgctgataaatca 283

                                                                       
Query: 284 tcaactgatttcaaaacaagcagatacccaagattaaaattagttaaaaaagatgccggt 343
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tcaactgatttcaaaacaagcagatacccaagattaaaattagttaaaaaagatgccggt 343

                                                                       
Query: 344 ccatattgggaactttttattaaaagataaaaagacagacaagtttgttgaaaccgattg 403
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ccatattgggaactttttattaaaagataaaaagacagacaagtttgttgaaaccgattg 403

                                                                       
Query: 404 gactctttggaaggatgaagatgaagtagaagaaaatgaagatgctggtaaattcggtaa 463
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gactctttggaaggatgaagatgaagtagaagaaaatgaagatgctggtaaattcggtaa 463

                                                   
Query: 464 ctttgatatgggtggcatggatatgcaacaaatgatgcaa 503
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ctttgatatgggtggcatggatatgcaacaaatgatgcaa 503


 Score =  131 bits (66), Expect = 2e-30
 Identities = 66/66 (100%)
 Strand = Plus / Plus

                                                                       
Query: 679 ctaaattaaactctgttgattaaataaatagtaataacacatatttatattcccacttta 738
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctaaattaaactctgttgattaaataaatagtaataacacatatttatattcccacttta 738

                 
Query: 739 tccccc 744
           ||||||
Sbjct: 739 tccccc 744


 Score = 75.8 bits (38), Expect = 1e-13
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 581 gccagatggtatgaatttcgatgatatggatgatatgg 618
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gccagatggtatgaatttcgatgatatggatgatatgg 618


 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 796 gggtggcngctcgcgatctagaactagtc 824
           |||||||||||||||||||||||||||||
Sbjct: 796 gggtggcngctcgcgatctagaactagtc 824


 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 1  catttttgtttattttttctatttg 25
          |||||||||||||||||||||||||
Sbjct: 1  catttttgtttattttttctatttg 25


>Contig-U14906-1 (Contig-U14906-1Q) /CSM_Contig/Contig-U14906-1Q.Seq.d
          Length = 634

 Score =  825 bits (416), Expect = 0.0
 Identities = 426/428 (99%), Gaps = 1/428 (0%)
 Strand = Plus / Plus

                                                                       
Query: 76  aacaaatataaatacaatgacaacacaagttccaaaaattaaatgggcagaaagaccaga 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aacaaatataaatacaatgacaacacaagttccaaaaattaaatgggcagaaagaccaga 60

                                                                       
Query: 136 ctttgtttatattacaattgaagcagatgttgaatctccagttgttaaattcgaatcaaa 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctttgtttatattacaattgaagcagatgttgaatctccagttgttaaattcgaatcaaa 120

                                                                       
Query: 196 caaaatttcattcgaaggtaaaggtaaagatggtaaacaatacgccttttcctatgattt 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caaaatttcattcgaaggtaaaggtaaagatggtaaacaatacgccttttcctatgattt 180

                                                                       
Query: 256 attcaaagaaatcgatgctgataaatcatcaactgatttcaaaacaagcagatacccaag 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attcaaagaaatcgatgctgataaatcatcaactgatttcaaaacaagcagatacccaag 240

                                                                       
Query: 316 attaaaattagttaaaaaagatgccggtccatattgggaactttttattaaaagataaaa 375
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 241 attaaaattagttaaaaaagatgccggtccatatt-ggaactttttattaaaagataaaa 299

                                                                       
Query: 376 agacagacaagtttgttgaaaccgattggactctttggaaggatgaagatgaagtagaag 435
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 agaaagacaagtttgttgaaaccgattggactctttggaaggatgaagatgaagtagaag 359

                                                                       
Query: 436 aaaatgaagatgctggtaaattcggtaactttgatatgggtggcatggatatgcaacaaa 495
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aaaatgaagatgctggtaaattcggtaactttgatatgggtggcatggatatgcaacaaa 419

                   
Query: 496 tgatgcaa 503
           ||||||||
Sbjct: 420 tgatgcaa 427


 Score =  131 bits (66), Expect = 2e-30
 Identities = 66/66 (100%)
 Strand = Plus / Plus

                                                                       
Query: 679 ctaaattaaactctgttgattaaataaatagtaataacacatatttatattcccacttta 738
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ctaaattaaactctgttgattaaataaatagtaataacacatatttatattcccacttta 599

                 
Query: 739 tccccc 744
           ||||||
Sbjct: 600 tccccc 605


 Score = 75.8 bits (38), Expect = 1e-13
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 581 gccagatggtatgaatttcgatgatatggatgatatgg 618
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gccagatggtatgaatttcgatgatatggatgatatgg 479


>Contig-U11510-1 (Contig-U11510-1Q) /CSM_Contig/Contig-U11510-1Q.Seq.d
          Length = 993

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 417 gatgaagatgaagtagaagaaaatgaagatg 447
           ||||||||||||||||||||| | |||||||
Sbjct: 622 gatgaagatgaagtagaagaagaagaagatg 652


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,430
Number of Sequences: 8402
Number of extensions: 15430
Number of successful extensions: 1819
Number of sequences better than 10.0: 254
length of query: 824
length of database: 8,075,542
effective HSP length: 16
effective length of query: 808
effective length of database: 7,941,110
effective search space: 6416416880
effective search space used: 6416416880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.18
Homology vs DNA 
Query= Contig-U15312-1 (Contig-U15312-1Q) /CSM_Contig/Contig-U15312-1Q.Seq.d
         (824 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU269204) Dictyostelium discoideum vegetative cDNA clone:VS...   549   0.0    4
(C24328) Dictyostelium discoideum gamete cDNA, clone FC-AR09.     545   0.0    4
(AU262450) Dictyostelium discoideum vegetative cDNA clone:VS...   539   0.0    4
(AU268994) Dictyostelium discoideum vegetative cDNA clone:VS...   470   0.0    5
(AU264745) Dictyostelium discoideum vegetative cDNA clone:VS...   500   0.0    4
(AU264757) Dictyostelium discoideum vegetative cDNA clone:VS...   391   0.0    5
(BJ357682) Dictyostelium discoideum cDNA clone:dda64j07, 3' ...   500   0.0    5
(BJ419547) Dictyostelium discoideum cDNA clone:ddv36n11, 5' ...   583   0.0    2
(AU268386) Dictyostelium discoideum vegetative cDNA clone:VS...   553   0.0    2
(AU268993) Dictyostelium discoideum vegetative cDNA clone:VS...   549   0.0    2
(AU269203) Dictyostelium discoideum vegetative cDNA clone:VS...   549   0.0    2
(AU264756) Dictyostelium discoideum vegetative cDNA clone:VS...   535   0.0    2
(BJ413129) Dictyostelium discoideum cDNA clone:ddv14d12, 5' ...   517   0.0    2
(AU264744) Dictyostelium discoideum vegetative cDNA clone:VS...   500   0.0    2
(BJ438124) Dictyostelium discoideum cDNA clone:ddv36n11, 3' ...   496   0.0    2
(BJ431471) Dictyostelium discoideum cDNA clone:ddv14d12, 3' ...   517   0.0    2
(C92075) Dictyostelium discoideum slug cDNA, clone SSD360.        299   0.0    4
(AU261409) Dictyostelium discoideum vegetative cDNA clone:VS...   291   0.0    5
(AU036915) Dictyostelium discoideum slug cDNA, clone SSB806.      634   0.0    2
(AU262081) Dictyostelium discoideum vegetative cDNA clone:VS...   291   0.0    4
(BJ409769) Dictyostelium discoideum cDNA clone:dds42o02, 3' ...   291   e-130  5
(AU072075) Dictyostelium discoideum slug cDNA, clone SSD360.      476   e-130  1
(AU268387) Dictyostelium discoideum vegetative cDNA clone:VS...   276   e-124  4
(BJ396513) Dictyostelium discoideum cDNA clone:dds42o02, 5' ...   291   e-103  3
(AU071564) Dictyostelium discoideum slug cDNA, clone SSB806.      131   2e-42  3
(AU265765) Dictyostelium discoideum vegetative cDNA clone:VS...   131   3e-33  2
(AU265764) Dictyostelium discoideum vegetative cDNA clone:VS...   131   3e-33  2
(BQ221040) AGENCOURT_7589397 NIH_MGC_72 Homo sapiens cDNA cl...    44   2e-04  2
(DC231243) Plasmodium berghei strain ANKA cDNA clone:SG02128...    52   0.007  2
(EB983959) 15510796 ZF40 Danio rerio cDNA clone 4233775, mRN...    42   0.008  2
(EB982958) 15471343 ZF40 Danio rerio cDNA clone 4214353, mRN...    42   0.015  2
(BG291630) 602385755F1 NIH_MGC_93 Homo sapiens cDNA clone IM...    44   0.018  2
(BG249669) 602319775F1 NIH_MGC_89 Homo sapiens cDNA clone IM...    42   0.025  2
(ES282196) PQ021H08.XT7 non-sporulating culture of P. brassi...    52   0.035  1
(EL704617) CBSU4069.rev NICHD_XGC_tropLimb_m Xenopus (Silura...    52   0.035  1
(EH368246) A10_j001_plate_171 j001 Nicotiana benthamiana cDN...    52   0.035  1
(EG703959) nbl41c10.y1 Rhesus monkey lens. Unnormalized (nbl...    52   0.035  1
(EG702386) nbl19b09.y1 Rhesus monkey lens. Unnormalized (nbl...    52   0.035  1
(EE737645) PMAH-aab37d12.g1 Lamprey_EST_Olfactory Petromyzon...    52   0.035  1
(DT458346) GH_ON36A07.r GH_ON Gossypium hirsutum cDNA clone ...    52   0.035  1
(DT458345) GH_ON36A07.f GH_ON Gossypium hirsutum cDNA clone ...    52   0.035  1
(DC002312) Xenopus laevis NBRP cDNA clone:rxlk58h14ex, 3' end.     52   0.035  1
(CV900342) PB037C10 mycelium, sporulating growth Phytophthor...    52   0.035  1
(CV895673) PA032E2 mycelium, non-sporulating growth Phytopht...    52   0.035  1
(CV870377) PDUts1078E11 Porcine testis cDNA library I Sus sc...    52   0.035  1
(CT679403) Danio rerio EST, clone ZF_mu_273a03 5'.                 52   0.035  1
(CO868693) PDUts1012E02 Porcine testis cDNA library I Sus sc...    52   0.035  1
(AL589351) Homo sapiens mRNA; EST DKFZp451K1815_r1  (from cl...    52   0.035  1
(AL363535) Mus musculus mRNA; expressed sequence tag; clone ...    52   0.035  1
(CD892080) G118.119M21F010725 G118 Triticum aestivum cDNA cl...    52   0.035  1
(CB473912) sn77_G03.f1 sn Sus scrofa cDNA 5', mRNA sequence.       52   0.035  1
(CA394797) cs56e09.y1 Human Retinal pigment epithelium/choro...    52   0.035  1
(BI249596) 602996254F1 NCI_CGAP_Mam5 Mus musculus cDNA clone...    52   0.035  1
(BG168696) 602319949F1 NIH_MGC_89 Homo sapiens cDNA clone IM...    52   0.035  1
(BG024889) 602275811F1 NIH_MGC_85 Homo sapiens cDNA clone IM...    52   0.035  1
(EV223004) 0139710 Brassica napus Root - drought Brassica na...    52   0.035  1
(EV222987) 0139686 Brassica napus Root - drought Brassica na...    52   0.035  1
(EV216538) 0190804 Brassica napus Leaf - drought Brassica na...    52   0.035  1
(EV208473) 0177310 Brassica napus Leaf - drought Brassica na...    52   0.035  1
(BG258630) 602380348F1 NIH_MGC_92 Homo sapiens cDNA clone IM...    42   0.035  2
(BG180200) 602329803F1 NIH_MGC_91 Homo sapiens cDNA clone IM...    44   0.060  2
(DC215120) Plasmodium berghei strain ANKA cDNA clone:MG01731...    44   0.064  2
(DH111559) Oryzias latipes Fosmid clone:GOLWFno370_h09, reve...    46   0.065  2
(AC116919) Dictyostelium discoideum chromosome 2 map complem...    46   0.083  3
(DC225348) Plasmodium berghei strain ANKA cDNA clone:SG00254...    44   0.097  2
(CF871471) tric027xi07.b1 T.reesei mycelial culture, Version...    44   0.097  2
(EV149656) 0139433 Brassica napus Early anther Brassica napu...    44   0.10   2
(EV101412) 0093735 Brassica napus Leaf library Brassica napu...    42   0.10   2
(EV101715) 0094038 Brassica napus Leaf library Brassica napu...    42   0.10   2
(CB901698) tric027xi08 T.reesei mycelial culture, Version 3 ...    44   0.11   2
(CT666284) Danio rerio EST, clone ZF_mu_2i11 5'.                   44   0.12   2
(EB984446) 15944982 ZF42 Danio rerio cDNA clone 4273017, mRN...    38   0.12   2
(BQ730570) AGENCOURT_8226877 NICHD_XGC_Emb4 Xenopus laevis c...    44   0.12   2
(CO422209) GGEZHT1025C05.g HT1 Gallus gallus cDNA clone GGEZ...    44   0.12   2
(AC159124) Medicago truncatula clone mth2-172h20, complete s...    50   0.14   1
(AC149207) Medicago truncatula chromosome 2 clone mte1-60l24...    50   0.14   1
(BD451177) Human Cancer Associated Gene Sequences and Polype...    50   0.14   1
(AB230041) Aspergillus oryzae cDNA, contig sequence: AoEST6928.    50   0.14   1
(CR342394) mte1-75I13RM1 BAC end, cultivar Jemalong A17 of M...    50   0.14   1
(EC782072) POAL11E02.F Colubridae snake Philodryas olfersii ...    50   0.14   1
(DT778080) 125616720 TH1 Tribolium castaneum cDNA clone 25O1...    50   0.14   1
(DN435911) LIB4217-016-R1-K1-F4 LIB4217 Canis lupus familiar...    50   0.14   1
(AM986499) Dicentrarchus labrax EST, 5'-end sequence, clone ...    50   0.14   1
(CX732479) oc31c04.y1 No3 mouse (cataract/retinal degenerati...    50   0.14   1
(AL363412) Mus musculus mRNA; expressed sequence tag; clone ...    50   0.14   1
(BQ829670) LL6in11248T7 AFT024-subtracted library Mus muscul...    50   0.14   1
(BI736640) 603360220F1 NIH_MGC_94 Mus musculus cDNA clone IM...    50   0.14   1
(BG164578) 602342136F1 NIH_MGC_89 Homo sapiens cDNA clone IM...    50   0.14   1
(BG024666) 602275473F1 NIH_MGC_85 Homo sapiens cDNA clone IM...    50   0.14   1
(BE807321) ss17g02.y1 Gm-c1047 Glycine max cDNA clone GENOME...    50   0.14   1
(AW780857) sl85d11.y1 Gm-c1037 Glycine max cDNA clone GENOME...    50   0.14   1
(AW734968) sk92f06.y1 Gm-c1035 Glycine max cDNA clone GENOME...    50   0.14   1
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    34   0.14   8
(BF788820) 602110529F2 NCI_CGAP_Kid14 Mus musculus cDNA clon...    44   0.19   2
(DC226663) Plasmodium berghei strain ANKA cDNA clone:SG00660...    42   0.24   2
(CX458528) JGI_XZG27621.rev NIH_XGC_tropGas7 Xenopus (Silura...    38   0.25   2
(CX458529) JGI_XZG27621.fwd NIH_XGC_tropGas7 Xenopus (Silura...    38   0.26   2
(BI380499) BFLG1_002130 Amphioxus 5-6 hrs cDNA library (Name...    44   0.29   2
(CT702310) Danio rerio EST, clone ZF_mu_232i21 3'.                 44   0.29   2
(FF461229) G50P6076RE11.T0 Acorn worm gastrula/neurula pCMVS...    44   0.31   2

>(AU269204) Dictyostelium discoideum vegetative cDNA clone:VSI768,
           3' end single read.
          Length = 635

 Score =  549 bits (277), Expect(4) = 0.0
 Identities = 277/277 (100%)
 Strand = Plus / Plus


Query: 76  aacaaatataaatacaatgacaacacaagttccaaaaattaaatgggcagaaagaccaga 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aacaaatataaatacaatgacaacacaagttccaaaaattaaatgggcagaaagaccaga 60


Query: 136 ctttgtttatattacaattgaagcagatgttgaatctccagttgttaaattcgaatcaaa 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctttgtttatattacaattgaagcagatgttgaatctccagttgttaaattcgaatcaaa 120


Query: 196 caaaatttcattcgaaggtaaaggtaaagatggtaaacaatacgccttttcctatgattt 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caaaatttcattcgaaggtaaaggtaaagatggtaaacaatacgccttttcctatgattt 180


Query: 256 attcaaagaaatcgatgctgataaatcatcaactgatttcaaaacaagcagatacccaag 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attcaaagaaatcgatgctgataaatcatcaactgatttcaaaacaagcagatacccaag 240


Query: 316 attaaaattagttaaaaaagatgccggtccatattgg 352
           |||||||||||||||||||||||||||||||||||||
Sbjct: 241 attaaaattagttaaaaaagatgccggtccatattgg 277

 Score =  291 bits (147), Expect(4) = 0.0
 Identities = 150/151 (99%)
 Strand = Plus / Plus


Query: 352 ggaactttttattaaaagataaaaagacagacaagtttgttgaaaccgattggactcttt 411
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 276 ggaactttttattaaaagataaaaagaaagacaagtttgttgaaaccgattggactcttt 335


Query: 412 ggaaggatgaagatgaagtagaagaaaatgaagatgctggtaaattcggtaactttgata 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ggaaggatgaagatgaagtagaagaaaatgaagatgctggtaaattcggtaactttgata 395


Query: 472 tgggtggcatggatatgcaacaaatgatgca 502
           |||||||||||||||||||||||||||||||
Sbjct: 396 tgggtggcatggatatgcaacaaatgatgca 426

 Score =  131 bits (66), Expect(4) = 0.0
 Identities = 66/66 (100%)
 Strand = Plus / Plus


Query: 679 ctaaattaaactctgttgattaaataaatagtaataacacatatttatattcccacttta 738
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ctaaattaaactctgttgattaaataaatagtaataacacatatttatattcccacttta 599


Query: 739 tccccc 744
           ||||||
Sbjct: 600 tccccc 605

 Score = 48.1 bits (24), Expect(4) = 0.0
 Identities = 24/24 (100%)
 Strand = Plus / Plus


Query: 594 aatttcgatgatatggatgatatg 617
           ||||||||||||||||||||||||
Sbjct: 455 aatttcgatgatatggatgatatg 478

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 865,378,250
Number of extensions: 57242951
Number of successful extensions: 5283226
Number of sequences better than 10.0: 5060
Length of query: 824
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 800
Effective length of database: 100,704,341,533
Effective search space: 80563473226400
Effective search space used: 80563473226400
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.15
Homology vs Protein 
Query= Contig-U15312-1 (Contig-U15312-1Q) /CSM_Contig/Contig-U15312-1Q.Seq.d
         (824 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q23280) RecName: Full=Uncharacterized protein ZC395.10;  &T2754...    45   2e-07
AY279517_1(AY279517|pid:none) Branchiostoma belcheri tsingtaunes...    50   2e-07
AM270325_29(AM270325|pid:none) Aspergillus niger contig An14c018...    48   5e-07
DQ172836_1(DQ172836|pid:none) Dactylis glomerata p23 mRNA, compl...    47   6e-07
AB206399_1(AB206399|pid:none) Bombyx mori mRNA for p23-like prot...    45   8e-07
AP007166_496(AP007166|pid:none) Aspergillus oryzae RIB40 genomic...    45   2e-06
CR382123_618(CR382123|pid:none) Kluyveromyces lactis strain NRRL...    42   7e-06
AM494971_445(AM494971|pid:none) Leishmania braziliensis chromoso...    40   1e-05
AE014187_508(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    47   4e-05
AM502253_459(AM502253|pid:none) Leishmania infantum chromosome 35.     40   4e-05
(Q11118) RecName: Full=Protein wos2; AltName: Full=p21;  &CU3296...    46   5e-05
AM910994_527(AM910994|pid:none) Plasmodium knowlesi strain H chr...    48   7e-05
AF204783_1(AF204783|pid:none) Lycopersicon esculentum ripening r...    45   7e-05
CR380957_492(CR380957|pid:none) Candida glabrata strain CBS138 c...    42   9e-05
AK340120_1(AK340120|pid:none) Acyrthosiphon pisum ACYPI001190 mR...    43   9e-05
BT061748_1(BT061748|pid:none) Zea mays full-length cDNA clone ZM...    38   2e-04
CU928179_106(CU928179|pid:none) Zygosaccharomyces rouxii strain ...    42   4e-04
AC138004_6(AC138004|pid:none) Oryza sativa chromosome 3 BAC OSJN...    38   4e-04
(P0C8Z0) RecName: Full=Uncharacterized protein OsI_027940;             38   5e-04
(Q6YYB0) RecName: Full=Uncharacterized protein Os08g0359500;  &A...    38   5e-04
AM502252_23(AM502252|pid:none) Leishmania infantum chromosome 34.      41   5e-04
(Q6ID70) RecName: Full=Uncharacterized protein At3g03773;  &AY64...    37   0.001
AF153128_1(AF153128|pid:none) Brassica napus p23 (p23) mRNA, com...    43   0.001
BT050592_1(BT050592|pid:none) Medicago truncatula clone MTYF5_F6...    38   0.001
(Q9VH95) RecName: Full=Uncharacterized protein CG16817;  &AE0142...    45   0.002
AY648333_1(AY648333|pid:none) Arabidopsis thaliana hypothetical ...    37   0.004
DQ144983_1(DQ144983|pid:none) Symbiodinium sp. C3 p23 mRNA, comp...    44   0.006
AC084022_18(AC084022|pid:none) Oryza sativa chromosome 3 BAC OSJ...    35   0.007
CR382137_846(CR382137|pid:none) Debaryomyces hansenii strain CBS...    35   0.011
CP000584_38(CP000584|pid:none) Ostreococcus lucimarinus CCE9901 ...    43   0.014
FN357541_15(FN357541|pid:none) Schistosoma mansoni genome sequen...    33   0.015
AY814798_1(AY814798|pid:none) Schistosoma japonicum SJCHGC02843 ...    35   0.025
FN323809_1(FN323809|pid:none) Schistosoma japonicum isolate Anhu...    35   0.025
AM428890_3(AM428890|pid:none) Vitis vinifera contig VV78X024534....    36   0.025
BT043144_1(BT043144|pid:none) Zea mays full-length cDNA clone ZM...    33   0.033
BT067787_1(BT067787|pid:none) Zea mays full-length cDNA clone ZM...    33   0.033
BT068686_1(BT068686|pid:none) Zea mays full-length cDNA clone ZM...    33   0.036
EU962538_1(EU962538|pid:none) Zea mays clone 243530 co-chaperone...    33   0.042
EU967936_1(EU967936|pid:none) Zea mays clone 311540 co-chaperone...    32   0.070
BT088111_1(BT088111|pid:none) Zea mays full-length cDNA clone ZM...    32   0.070
EU961566_1(EU961566|pid:none) Zea mays clone 236578 co-chaperone...    32   0.070
FN316666_1(FN316666|pid:none) Schistosoma japonicum isolate Anhu...    35   0.091
CR940348_472(CR940348|pid:none) Theileria annulata strain Ankara...    39   0.16
EU975543_1(EU975543|pid:none) Zea mays clone 492129 unknown mRNA.      39   0.21
BC055174_1(BC055174|pid:none) Danio rerio protein tyrosine phosp...    39   0.27
BX571883_1(BX571883|pid:none) Zebrafish DNA sequence from clone ...    39   0.27
AJ829922_1(AJ829922|pid:none) Tribolium castaneum mRNA for twist...    37   1.0
DQ680014_1(DQ680014|pid:none) Toxoplasma gondii P23 co-chaperone...    35   2.3
AM055943_237(AM055943|pid:none) Toxoplasma gondii RH, genomic DN...    35   2.3
FN323831_1(FN323831|pid:none) Schistosoma japonicum isolate Anhu...    35   3.9
AY373584_1(AY373584|pid:none) Emericella nidulans diploid state ...    35   3.9
CR940347_896(CR940347|pid:none) Theileria annulata strain Ankara...    34   6.6
CP000084_1269(CP000084|pid:none) Candidatus Pelagibacter ubique ...    33   8.6
AJ938182_419(AJ938182|pid:none) Staphylococcus aureus RF122 comp...    33   8.6

>(Q23280) RecName: Full=Uncharacterized protein ZC395.10;
           &T27543(T27543) &U13642_6(U13642|pid:none)
          Length = 175

 Score = 45.4 bits (106), Expect(2) = 2e-07
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = +2

Query: 107 PKIKWAERPDFVYITIEAD-VESPVVKFESNKISFEGKGKDGKQYAFSYDLFKEIDADKS 283
           P + WA+R   VY+TIE D  +   +K E NK+ F+G  K  K Y  + + F EID
Sbjct: 5   PTVLWAQRESLVYLTIEVDEAKIEELKGEGNKLHFQGSSKTDK-YEATLEFFDEIDPASV 63

Query: 284 STDFKTSRYPRLKLVKKDAGPYW 352
                ++R   + + KK   P W
Sbjct: 64  KHTGSSTRVVEITVQKKT--PAW 84

 Score = 33.5 bits (75), Expect(2) = 2e-07
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +3

Query: 360 LLKDKKTDKFVETDWTLWKDEDEVEENEDAG 452
           LL++K    +++ D+  WKDEDE +E EDAG
Sbjct: 88  LLQNKGKVHWLKVDFGKWKDEDEDDEAEDAG 118

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 824,867,528
Number of extensions: 12163952
Number of successful extensions: 32248
Number of sequences better than 10.0: 54
Number of HSP's gapped: 32232
Number of HSP's successfully gapped: 93
Length of query: 274
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 147
Effective length of database: 640,137,871
Effective search space: 94100267037
Effective search space used: 94100267037
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.84  gvh: 0.06  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: Golgi

>> prediction for Contig-U15312-1 is nuc
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 1
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0