Contig-U15306-1 |
Contig ID |
Contig-U15306-1 |
Contig update |
2004. 6.11 |
Contig sequence |
|
Gap |
no gap |
Contig length |
2452 |
Chromosome number (1..6, M) |
3 |
Chromosome length |
6358359 |
Start point |
3887051 |
End point |
3889342 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
54 |
Number of EST |
91 |
Link to clone list |
U15306 |
List of clone(s) |
est1=AHD895F,1,227 est2=AHP259F,4,337 est3=AHG477F,137,618 est4=AHL132F,140,728 est5=AHK116F,141,326 est6=AHO820F,149,705 est7=AHH809F,152,738 est8=AHI401F,152,615 est9=AHC850F,155,788 est10=AHB411F,157,665 est11=AHM215F,158,809 est12=AHP504F,158,525 est13=AHE442F,159,786 est14=AHJ466F,160,733 est15=AHO452F,160,733 est16=AHD192F,161,617 est17=AHD214F,161,735 est18=AHD779F,161,705 est19=AHE695F,161,712 est20=AHH446F,161,804 est21=AHI353F,161,622 est22=AHI881F,161,809 est23=AHJ833F,161,788 est24=AHK632F,161,811 est25=AHL347F,161,812 est26=AHN234F,161,788 est27=AHN637F,161,805 est28=AHQ841F,161,733 est29=AHJ132F,162,734 est30=AHN590F,164,786 est31=AHP158F,164,619 est32=AHE529F,169,707 est33=AHJ182F,169,809 est34=AHN753F,169,734 est35=AHD653F,170,666 est36=AHD690F,172,806 est37=AFK411F,173,1229 est38=AHA268F,173,805 est39=AHA873F,173,705 est40=AHC166F,173,743 est41=AHP806F,173,556 est42=AHQ421F,173,742 est43=AHA525F,183,796 est44=AHP193F,188,343 est45=AHF313F,263,865 est46=AHD388F,604,1250 est47=AFC792F,1009,1540 est48=SLD554F,1452,1756 est49=AHL686Z,1623,2344 est50=AHH446Z,1667,2442 est51=AHE529Z,1698,2401 est52=AFK411Z,1713,2350 est53=AFC792Z,1728,2441 est54=AHL347Z,1745,2332 est55=AHH809Z,1801,2452 est56=AHB529Z,1802,2393 est57=AHE695Z,1802,2412 est58=AHK116Z,1802,2364 est59=AHB411Z,1803,2452 est60=AHC166Z,1803,2452 est61=AHC850Z,1803,2452 est62=AHD192Z,1803,2452 est63=AHD388Z,1803,2452 est64=AHI353Z,1804,2442 est65=AHJ833Z,1804,2443 est66=AHM215Z,1804,2375 est67=AHN637Z,1804,2450 est68=AHD653Z,1805,2394 est69=AHE442Z,1806,2452 est70=AHN234Z,1806,2452 est71=AHQ841Z,1807,2293 est72=AFO320Z,1835,2417 est73=AHD690Z,1844,2331 est74=AHO620Z,1860,2410 est75=AHJ182Z,1861,2029 est76=AHQ421Z,1861,2331 est77=AHA873Z,1866,2452 est78=AHJ466Z,1866,2397 est79=AHA268Z,1867,2452 est80=AHP259Z,1869,2442 est81=AHP504Z,1874,2415 est82=AHJ132Z,1875,2395 est83=AHP158Z,1909,2426 est84=AHA525Z,1911,2448 est85=AHI401Z,1941,2293 est86=AHN753Z,1941,2452 est87=AHK632Z,2036,2153 est88=AHO252Z,2055,2175 est89=AFO640Z,2098,2201 est90=AHL132Z,2153,2448 est91=SLD554Z,2175,2452
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
|
dna update |
2009. 1.18 |
Homology vs DNA |
Query= Contig-U15306-1 (Contig-U15306-1Q) /CSM_Contig/Contig-U15306-1Q.Seq.d (2452 letters)
Database: ddbj_B 98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ332033) Dictyostelium discoideum cDNA clone:dda37p21, 5' ... 922 0.0 2 (BJ347372) Dictyostelium discoideum cDNA clone:dda26l23, 3' ... 827 0.0 2 (BJ354830) Dictyostelium discoideum cDNA clone:dda54k22, 3' ... 785 0.0 4 (BJ352030) Dictyostelium discoideum cDNA clone:dda45l12, 3' ... 785 0.0 5 (BJ350576) Dictyostelium discoideum cDNA clone:dda40i07, 3' ... 785 0.0 5 (BJ341481) Dictyostelium discoideum cDNA clone:dda6h23, 3' e... 779 0.0 5 (BJ347255) Dictyostelium discoideum cDNA clone:dda26f16, 3' ... 777 0.0 5 (BJ355830) Dictyostelium discoideum cDNA clone:dda58i10, 3' ... 773 0.0 5 (BJ349448) Dictyostelium discoideum cDNA clone:dda36d14, 3' ... 761 0.0 5 (BJ346836) Dictyostelium discoideum cDNA clone:dda25a09, 3' ... 720 0.0 2 (BJ344942) Dictyostelium discoideum cDNA clone:dda21f04, 3' ... 662 0.0 5 (BJ349887) Dictyostelium discoideum cDNA clone:dda37p21, 3' ... 755 0.0 5 (BJ349845) Dictyostelium discoideum cDNA clone:dda37g23, 3' ... 755 0.0 5 (BJ350266) Dictyostelium discoideum cDNA clone:dda39d12, 3' ... 761 0.0 5 (BJ349141) Dictyostelium discoideum cDNA clone:dda35c17, 3' ... 761 0.0 5 (BJ354382) Dictyostelium discoideum cDNA clone:dda53n11, 3' ... 708 0.0 3 (BJ348384) Dictyostelium discoideum cDNA clone:dda33f04, 3' ... 745 0.0 5 (BJ352701) Dictyostelium discoideum cDNA clone:dda47j13, 3' ... 789 0.0 4 (BJ350756) Dictyostelium discoideum cDNA clone:dda40m24, 3' ... 817 0.0 4 (BJ332997) Dictyostelium discoideum cDNA clone:dda41j03, 5' ... 755 0.0 3 (BJ355490) Dictyostelium discoideum cDNA clone:dda57c10, 3' ... 733 0.0 5 (BJ329969) Dictyostelium discoideum cDNA clone:dda26l23, 5' ... 755 0.0 2 (BJ352203) Dictyostelium discoideum cDNA clone:dda46b04, 3' ... 535 0.0 6 (BJ324548) Dictyostelium discoideum cDNA clone:dda6h23, 5' e... 567 0.0 2 (BJ353458) Dictyostelium discoideum cDNA clone:dda50b10, 3' ... 769 0.0 5 (BJ346097) Dictyostelium discoideum cDNA clone:dda29h05, 3' ... 785 0.0 4 (BJ354921) Dictyostelium discoideum cDNA clone:dda55m04, 3' ... 733 0.0 5 (BJ353717) Dictyostelium discoideum cDNA clone:dda51o03, 3' ... 733 0.0 5 (BJ348784) Dictyostelium discoideum cDNA clone:dda34i07, 3' ... 763 0.0 4 (BJ327598) Dictyostelium discoideum cDNA clone:dda21f04, 5' ... 755 0.0 3 (BJ336304) Dictyostelium discoideum cDNA clone:dda53n11, 5' ... 755 0.0 3 (BJ336022) Dictyostelium discoideum cDNA clone:dda52o08, 5' ... 755 0.0 3 (BJ350072) Dictyostelium discoideum cDNA clone:dda38i14, 3' ... 684 0.0 4 (BJ335319) Dictyostelium discoideum cDNA clone:dda49c21, 5' ... 755 0.0 3 (BJ335053) Dictyostelium discoideum cDNA clone:dda48b22, 5' ... 755 0.0 3 (BJ337687) Dictyostelium discoideum cDNA clone:dda58i10, 5' ... 755 0.0 3 (BJ336798) Dictyostelium discoideum cDNA clone:dda55m04, 5' ... 755 0.0 3 (BJ334178) Dictyostelium discoideum cDNA clone:dda45l12, 5' ... 755 0.0 3 (BJ356978) Dictyostelium discoideum cDNA clone:dda62g01, 3' ... 785 0.0 4 (BJ332336) Dictyostelium discoideum cDNA clone:dda38c24, 5' ... 755 0.0 3 (BJ356820) Dictyostelium discoideum cDNA clone:dda61e16, 3' ... 771 0.0 4 (BJ356362) Dictyostelium discoideum cDNA clone:dda60g06, 3' ... 819 0.0 3 (BJ348281) Dictyostelium discoideum cDNA clone:dda32b20, 3' ... 747 0.0 4 (BJ339628) Dictyostelium discoideum cDNA clone:dda58c23, 5' ... 755 0.0 2 (BJ332485) Dictyostelium discoideum cDNA clone:dda39d12, 5' ... 755 0.0 2 (BJ330444) Dictyostelium discoideum cDNA clone:dda31g18, 5' ... 755 0.0 3 (BJ329500) Dictyostelium discoideum cDNA clone:dda25a09, 5' ... 755 0.0 3 (BJ330136) Dictyostelium discoideum cDNA clone:dda27b13, 5' ... 755 0.0 3 (BJ337392) Dictyostelium discoideum cDNA clone:dda57c10, 5' ... 755 0.0 2 (BJ331651) Dictyostelium discoideum cDNA clone:dda36d14, 5' ... 755 0.0 2 (BJ335445) Dictyostelium discoideum cDNA clone:dda50b10, 5' ... 755 0.0 2 (BJ330633) Dictyostelium discoideum cDNA clone:dda32a07, 5' ... 755 0.0 2 (BJ347910) Dictyostelium discoideum cDNA clone:dda31g18, 3' ... 702 0.0 4 (BJ353264) Dictyostelium discoideum cDNA clone:dda49d18, 3' ... 710 0.0 4 (BJ329864) Dictyostelium discoideum cDNA clone:dda26f16, 5' ... 755 0.0 3 (BJ331469) Dictyostelium discoideum cDNA clone:dda35c17, 5' ... 686 0.0 2 (BJ338811) Dictyostelium discoideum cDNA clone:dda63j06, 5' ... 684 0.0 2 (BJ332081) Dictyostelium discoideum cDNA clone:dda37k04, 5' ... 670 0.0 2 (BJ337756) Dictyostelium discoideum cDNA clone:dda58j13, 5' ... 668 0.0 2 (BJ335235) Dictyostelium discoideum cDNA clone:dda49o07, 5' ... 668 0.0 2 (BJ339129) Dictyostelium discoideum cDNA clone:dda64b12, 5' ... 666 0.0 2 (BJ357649) Dictyostelium discoideum cDNA clone:dda64b12, 3' ... 678 0.0 3 (BJ335259) Dictyostelium discoideum cDNA clone:dda49d18, 5' ... 666 0.0 2 (BJ336305) Dictyostelium discoideum cDNA clone:dda53o07, 5' ... 656 0.0 2 (BJ356810) Dictyostelium discoideum cDNA clone:dda61c15, 3' ... 718 0.0 3 (BJ337962) Dictyostelium discoideum cDNA clone:dda59h14, 5' ... 666 0.0 2 (BJ334344) Dictyostelium discoideum cDNA clone:dda46b04, 5' ... 642 0.0 2 (BJ353238) Dictyostelium discoideum cDNA clone:dda49o07, 3' ... 680 0.0 4 (BJ332816) Dictyostelium discoideum cDNA clone:dda40m24, 5' ... 624 0.0 2 (BJ355909) Dictyostelium discoideum cDNA clone:dda58j13, 3' ... 656 0.0 3 (BJ332919) Dictyostelium discoideum cDNA clone:dda40i07, 5' ... 615 0.0 2 (BJ338103) Dictyostelium discoideum cDNA clone:dda60h06, 5' ... 611 0.0 2 (BJ330783) Dictyostelium discoideum cDNA clone:dda32b20, 5' ... 611 0.0 2 (BJ347571) Dictyostelium discoideum cDNA clone:dda27b13, 3' ... 684 0.0 3 (BJ350114) Dictyostelium discoideum cDNA clone:dda38c24, 3' ... 646 0.0 3 (BJ332384) Dictyostelium discoideum cDNA clone:dda38n19, 5' ... 611 0.0 2 (BJ348111) Dictyostelium discoideum cDNA clone:dda32a07, 3' ... 658 0.0 3 (BJ357308) Dictyostelium discoideum cDNA clone:dda63j06, 3' ... 597 0.0 3 (BJ332291) Dictyostelium discoideum cDNA clone:dda38i14, 5' ... 519 0.0 2 (BJ352508) Dictyostelium discoideum cDNA clone:dda47b02, 3' ... 591 e-174 2 (BJ330869) Dictyostelium discoideum cDNA clone:dda33f04, 5' ... 458 e-167 2 (BJ333743) Dictyostelium discoideum cDNA clone:dda43j20, 5' ... 438 e-167 2 (BJ338433) Dictyostelium discoideum cDNA clone:dda61c15, 5' ... 440 e-165 2 (BJ334568) Dictyostelium discoideum cDNA clone:dda47b02, 5' ... 432 e-165 2 (BJ331989) Dictyostelium discoideum cDNA clone:dda37g23, 5' ... 436 e-164 2 (BJ334737) Dictyostelium discoideum cDNA clone:dda47j13, 5' ... 438 e-164 2 (AU061217) Dictyostelium discoideum slug cDNA, clone SLD554. 444 e-157 2 (BJ338443) Dictyostelium discoideum cDNA clone:dda61e16, 5' ... 313 e-131 2 (BJ338588) Dictyostelium discoideum cDNA clone:dda62l02, 5' ... 315 e-127 2 (BJ354384) Dictyostelium discoideum cDNA clone:dda53o07, 3' ... 287 e-110 3 (BJ338574) Dictyostelium discoideum cDNA clone:dda62g01, 5' ... 236 e-104 2 (AU052586) Dictyostelium discoideum slug cDNA, clone SLD554. 244 2e-92 3 (BJ396385) Dictyostelium discoideum cDNA clone:dds42b20, 5' ... 319 3e-82 1 (BJ391015) Dictyostelium discoideum cDNA clone:dds14m15, 5' ... 319 3e-82 1 (BJ388083) Dictyostelium discoideum cDNA clone:dds7f24, 5' e... 319 3e-82 1 (BJ387961) Dictyostelium discoideum cDNA clone:dds7k02, 5' e... 319 3e-82 1 (BJ359760) Dictyostelium discoideum cDNA clone:ddc2k09, 5' e... 319 3e-82 1 (BJ338142) Dictyostelium discoideum cDNA clone:dda60c07, 5' ... 319 3e-82 1 (BJ333022) Dictyostelium discoideum cDNA clone:dda41o05, 5' ... 319 3e-82 1 (BJ332389) Dictyostelium discoideum cDNA clone:dda38n24, 5' ... 319 3e-82 1
>(BJ332033) Dictyostelium discoideum cDNA clone:dda37p21, 5' end, single read. Length = 647
Score = 922 bits (465), Expect(2) = 0.0 Identities = 465/465 (100%) Strand = Plus / Plus
Query: 786 tcgggtgaaggtatgcgtacctcgattagatcctaagggtaaaggatatgtacgtattga 845 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 183 tcgggtgaaggtatgcgtacctcgattagatcctaagggtaaaggatatgtacgtattga 242
Query: 846 agcatatggtttaaaaggaggatcaggcggtatagaactagatacagagaaattgattac 905 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 243 agcatatggtttaaaaggaggatcaggcggtatagaactagatacagagaaattgattac 302
Query: 906 agatatcgtatcagggttccatttagtaggcatgcagccttcttcggaaatgatcaatag 965 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 303 agatatcgtatcagggttccatttagtaggcatgcagccttcttcggaaatgatcaatag 362
Query: 966 ttggcgtccttttttaagagacttctctactacactctccaatatgactctggacttaaa 1025 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 363 ttggcgtccttttttaagagacttctctactacactctccaatatgactctggacttaaa 422
Query: 1026 ggataccccttctccgatgtcaattaattcttatgatccaggtaactatcgcagtacctt 1085 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 423 ggataccccttctccgatgtcaattaattcttatgatccaggtaactatcgcagtacctt 482
Query: 1086 tgagcgaatagcgagtcatgctactaatagaagaattaccctcacacgatatggggcagc 1145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 483 tgagcgaatagcgagtcatgctactaatagaagaattaccctcacacgatatggggcagc 542
Query: 1146 ctacttgcatatcgtgagccaaataagaacaaagatcaaacaacagcaaagccttcccat 1205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 543 ctacttgcatatcgtgagccaaataagaacaaagatcaaacaacagcaaagccttcccat 602
Query: 1206 tgtcccagttgagtatccttcccatagctataccggtaagcttac 1250 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 603 tgtcccagttgagtatccttcccatagctataccggtaagcttac 647
Score = 347 bits (175), Expect(2) = 0.0 Identities = 175/175 (100%) Strand = Plus / Plus
Query: 604 tccatacaattaatcgccaaaggagggcatgttatttaccttaaccatccaaatgctcaa 663 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tccatacaattaatcgccaaaggagggcatgttatttaccttaaccatccaaatgctcaa 60
Query: 664 gtagctactctcaaggttcaactacctgataccgcaccatccactttagaattaccatta 723 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gtagctactctcaaggttcaactacctgataccgcaccatccactttagaattaccatta 120
Query: 724 caaataactccagcaatagacgtaaagcaacttgcaatatcgacccatgattacc 778 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 caaataactccagcaatagacgtaaagcaacttgcaatatcgacccatgattacc 175
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 98226423 Number of Hits to DB: 2,254,272,775 Number of extensions: 121959575 Number of successful extensions: 9637859 Number of sequences better than 10.0: 1091 Length of query: 2452 Length of database: 98,766,808,389 Length adjustment: 25 Effective length of query: 2427 Effective length of database: 100,606,115,110 Effective search space: 244171041371970 Effective search space used: 244171041371970 X1: 11 (21.8 bits) S2: 23 (46.1 bits)
|
protein update |
2009. 7.15 |
Homology vs Protein |
Query= Contig-U15306-1 (Contig-U15306-1Q) /CSM_Contig/Contig-U15306-1Q.Seq.d (2452 letters)
Database: nrp_B 3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
CP000927_1285(CP000927|pid:none) Caulobacter sp. K31, complete g... 54 4e-05 CP001102_791(CP001102|pid:none) Candidatus Amoebophilus asiaticu... 50 3e-04 CU207366_3486(CU207366|pid:none) Gramella forsetii KT0803 comple... 49 9e-04 EU325849_1(EU325849|pid:none) Oncorhynchus masou formosanus LECT... 49 0.001 BT073541_1(BT073541|pid:none) Oncorhynchus mykiss clone omyk-evn... 47 0.003 AF271114_1(AF271114|pid:none) Oncorhynchus mykiss chemotaxin mRN... 47 0.003 AF363272_1(AF363272|pid:none) Oncorhynchus mykiss LECT2 neutroph... 47 0.004 BT047251_1(BT047251|pid:none) Salmo salar clone ssal-evf-542-352... 46 0.007 BT048115_1(BT048115|pid:none) Salmo salar clone ssal-evf-552-377... 45 0.013 AE008692_216(AE008692|pid:none) Zymomonas mobilis subsp. mobilis... 43 0.062 CU207211_233(CU207211|pid:none) Herminiimonas arsenicoxydans chr... 42 0.081 CP000348_79(CP000348|pid:none) Leptospira borgpetersenii serovar... 42 0.11 BT049789_1(BT049789|pid:none) Salmo salar clone ssal-evf-518-213... 42 0.11 CP000350_2605(CP000350|pid:none) Leptospira borgpetersenii serov... 42 0.11 BA000012_1835(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 41 0.18 CP001393_2343(CP001393|pid:none) Anaerocellum thermophilum DSM 6... 41 0.18 CP000269_301(CP000269|pid:none) Janthinobacterium sp. Marseille,... 41 0.24 CP000492_515(CP000492|pid:none) Chlorobium phaeobacteroides DSM ... 40 0.40 DQ875742_33(DQ875742|pid:none) Cyanophage Pf-WMP4, complete geno... 40 0.40 AE010300_4308(AE010300|pid:none) Leptospira interrogans serovar ... 40 0.40 EU136177_1(EU136177|pid:none) Lates calcarifer leukocyte cell-de... 40 0.40 CP001635_4615(CP001635|pid:none) Variovorax paradoxus S110 chrom... 40 0.53 CT978603_1236(CT978603|pid:none) Synechococcus sp. RCC307 genomi... 40 0.53 CP000655_462(CP000655|pid:none) Polynucleobacter necessarius sub... 40 0.53 CP001010_1131(CP001010|pid:none) Polynucleobacter necessarius su... 40 0.53 CP000680_923(CP000680|pid:none) Pseudomonas mendocina ymp, compl... 40 0.53 CP000828_4025(CP000828|pid:none) Acaryochloris marina MBIC11017,... 39 0.69 CP001287_2128(CP001287|pid:none) Cyanothece sp. PCC 8801, comple... 39 0.69 BX842656_177(BX842656|pid:none) Bdellovibrio bacteriovorus compl... 39 0.69 CP001102_379(CP001102|pid:none) Candidatus Amoebophilus asiaticu... 39 0.69 BA000039_1181(BA000039|pid:none) Thermosynechococcus elongatus B... 39 0.69 AM412317_3612(AM412317|pid:none) Clostridium botulinum A str. AT... 39 0.90 CP000671_177(CP000671|pid:none) Haemophilus influenzae PittEE, c... 39 0.90 CP000724_4584(CP000724|pid:none) Alkaliphilus metalliredigens QY... 39 0.90 (P44693) RecName: Full=Uncharacterized metalloprotease HI0409; ... 39 0.90 CP000606_3439(CP000606|pid:none) Shewanella loihica PV-4, comple... 39 1.2 BX950851_2459(BX950851|pid:none) Erwinia carotovora subsp. atros... 39 1.2 CR555306_498(CR555306|pid:none) Azoarcus sp. EbN1 complete genome. 39 1.2 CP000447_3760(CP000447|pid:none) Shewanella frigidimarina NCIMB ... 38 1.5 CP000448_239(CP000448|pid:none) Syntrophomonas wolfei subsp. wol... 38 1.5 CP001102_511(CP001102|pid:none) Candidatus Amoebophilus asiaticu... 38 1.5 FJ502111_1(FJ502111|pid:none) Aristichthys nobilis clone B120 le... 38 1.5 CP000316_4033(CP000316|pid:none) Polaromonas sp. JS666, complete... 38 2.0 CP000777_592(CP000777|pid:none) Leptospira biflexa serovar Patoc... 38 2.0 CP000850_4051(CP000850|pid:none) Salinispora arenicola CNS-205, ... 38 2.0 CP000361_1604(CP000361|pid:none) Arcobacter butzleri RM4018, com... 38 2.0 CP000901_2194(CP000901|pid:none) Yersinia pestis Angola, complet... 38 2.0 AE009952_2212(AE009952|pid:none) Yersinia pestis KIM, complete g... 38 2.0 AF0251(AF0251) probable M23/M37 peptidase-family protein YPO2062... 38 2.0 BX571657_245(BX571657|pid:none) Wolinella succinogenes, complete... 38 2.0 AE007869_1791(AE007869|pid:none) Agrobacterium tumefaciens str. ... 37 2.6 AP009351_1895(AP009351|pid:none) Staphylococcus aureus subsp. au... 37 2.6 AP006618_3124(AP006618|pid:none) Nocardia farcinica IFM 10152 DN... 37 2.6 CP000507_360(CP000507|pid:none) Shewanella amazonensis SB2B, com... 37 2.6 CP000529_499(CP000529|pid:none) Polaromonas naphthalenivorans CJ... 37 2.6 CP000494_3720(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 37 2.6 CP000569_1902(CP000569|pid:none) Actinobacillus pleuropneumoniae... 37 2.6 CP000703_1980(CP000703|pid:none) Staphylococcus aureus subsp. au... 37 2.6 CP000096_1608(CP000096|pid:none) Pelodictyon luteolum DSM 273, c... 37 2.6 CP000923_2281(CP000923|pid:none) Thermoanaerobacter sp. X514, co... 37 2.6 CP000264_2529(CP000264|pid:none) Jannaschia sp. CCS1, complete g... 37 2.6 AP009324_1942(AP009324|pid:none) Staphylococcus aureus subsp. au... 37 2.6 AE016825_2477(AE016825|pid:none) Chromobacterium violaceum ATCC ... 37 2.6 BC162786_1(BC162786|pid:none) Danio rerio leukocyte cell-derived... 37 2.6 CP000255_1859(CP000255|pid:none) Staphylococcus aureus subsp. au... 37 2.6 CP000730_1912(CP000730|pid:none) Staphylococcus aureus subsp. au... 37 2.6 B89985(B89985) hypothetical protein SA1766 [imported] - Staphylo... 37 2.6 AY508486_14(AY508486|pid:none) Bacteriophage 77, complete genome. 37 2.6 CP000667_3762(CP000667|pid:none) Salinispora tropica CNB-440, co... 37 2.6 AY322150_5(AY322150|pid:none) Enterococcus faecium isolate E300 ... 37 2.6 CP000812_739(CP000812|pid:none) Thermotoga lettingae TMO, comple... 37 3.4 BX547941_2(BX547941|pid:none) Zebrafish DNA sequence from clone ... 37 3.4 CP000853_2753(CP000853|pid:none) Alkaliphilus oremlandii OhILAs,... 37 3.4 CP000923_1023(CP000923|pid:none) Thermoanaerobacter sp. X514, co... 37 3.4 CP000607_417(CP000607|pid:none) Chlorobium phaeovibrioides DSM 2... 37 3.4 CP000302_669(CP000302|pid:none) Shewanella denitrificans OS217, ... 37 4.5 CP000667_3933(CP000667|pid:none) Salinispora tropica CNB-440, co... 37 4.5 CP000771_1620(CP000771|pid:none) Fervidobacterium nodosum Rt17-B... 37 4.5 CP001147_1990(CP001147|pid:none) Thermodesulfovibrio yellowstoni... 37 4.5 CP000612_3245(CP000612|pid:none) Desulfotomaculum reducens MI-1,... 37 4.5 CP000232_2313(CP000232|pid:none) Moorella thermoacetica ATCC 390... 36 5.8 AM286278_67(AM286278|pid:none) Arthrobacter nitroguajacolicus pA... 36 5.8 CP000435_1293(CP000435|pid:none) Synechococcus sp. CC9311, compl... 36 5.8 BX548175_898(BX548175|pid:none) Prochlorococcus marinus MIT9313 ... 36 5.8 CP000453_432(CP000453|pid:none) Alkalilimnicola ehrlichii MLHE-1... 36 5.8 CP001022_531(CP001022|pid:none) Exiguobacterium sibiricum 255-15... 36 5.8 BX842647_24(BX842647|pid:none) Bdellovibrio bacteriovorus comple... 36 5.8 CP001102_636(CP001102|pid:none) Candidatus Amoebophilus asiaticu... 36 5.8 AM180252_406(AM180252|pid:none) Lawsonia intracellularis PHE/MN1... 36 5.8 CP000769_781(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, co... 36 5.8 CP000884_5887(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 36 5.8 CP000885_3563(CP000885|pid:none) Clostridium phytofermentans ISD... 36 5.8 AE010300_1605(AE010300|pid:none) Leptospira interrogans serovar ... 36 5.8 AP009493_3984(AP009493|pid:none) Streptomyces griseus subsp. gri... 36 5.8 CP000860_2090(CP000860|pid:none) Candidatus Desulforudis audaxvi... 36 7.6 CP000282_853(CP000282|pid:none) Saccharophagus degradans 2-40, c... 36 7.6 AM260479_824(AM260479|pid:none) Ralstonia eutropha H16 chromosom... 36 7.6 CP000826_2763(CP000826|pid:none) Serratia proteamaculans 568, co... 36 7.6 AM286415_2264(AM286415|pid:none) Yersinia enterocolitica subsp. ... 36 7.6 CP001357_839(CP001357|pid:none) Brachyspira hyodysenteriae WA1, ... 36 7.6 BA000030_4125(BA000030|pid:none) Streptomyces avermitilis MA-468... 36 7.6 (P12847) RecName: Full=Myosin-3; AltName: Full=Myosin heavy chai... 35 10.0 CP001110_594(CP001110|pid:none) Pelodictyon phaeoclathratiforme ... 35 10.0 CP000820_5859(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 35 10.0 CP000155_1790(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 35 10.0 CP001196_1959(CP001196|pid:none) Oligotropha carboxidovorans OM5... 35 10.0 CP000416_1043(CP000416|pid:none) Lactobacillus brevis ATCC 367, ... 35 10.0 CP000542_2594(CP000542|pid:none) Verminephrobacter eiseniae EF01... 35 10.0 CU468135_1494(CU468135|pid:none) Erwinia tasmaniensis strain ET1... 35 10.0 EU730897_11(EU730897|pid:none) Brachypodium distachyon clone BAC... 35 10.0 AE008691_2493(AE008691|pid:none) Thermoanaerobacter tengcongensi... 35 10.0 CT971583_1120(CT971583|pid:none) Synechococcus WH7803 complete g... 35 10.0 CP000934_2853(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 35 10.0 BA000030_4514(BA000030|pid:none) Streptomyces avermitilis MA-468... 35 10.0 CP001022_532(CP001022|pid:none) Exiguobacterium sibiricum 255-15... 35 10.0
>CP000927_1285(CP000927|pid:none) Caulobacter sp. K31, complete genome. Length = 221
Score = 53.5 bits (127), Expect = 4e-05 Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 6/130 (4%) Frame = +1
Query: 1900 PRG----GQGHYGASRGG--RKHMGIDFSSIVGQDIVAPISGKVVNFKGARTKYPMLQLY 2061 PRG G G +GA R G R+H G+D+ + GQD+ APISG V A L+ Sbjct: 87 PRGHDDFGDGQFGARRDGGVREHEGVDYVAAAGQDVAAPISGYVTKIGYAYAGSSDLKFV 146
Query: 2062 PSKKFTEFDYLQMLYVHPPVGINMGASYQVSVGDTIGIAANLQELGYSVEVTPHIHLELK 2241 + YV P V + V +G TIG +LQ+ + +T H+HLE+ Sbjct: 147 EITNPALGYVARAFYVTPDVEVGQ----TVRLGQTIGRDQSLQK--HYPGITNHVHLEVM 200
Query: 2242 KNVPGKDPIS 2271 + PG + ++ Sbjct: 201 Q--PGGERVN 208
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3236559 Number of Hits to DB: 3,950,939,631 Number of extensions: 81098596 Number of successful extensions: 219928 Number of sequences better than 10.0: 115 Number of HSP's gapped: 219688 Number of HSP's successfully gapped: 115 Length of query: 817 Length of database: 1,051,180,864 Length adjustment: 137 Effective length of query: 680 Effective length of database: 607,772,281 Effective search space: 413285151080 Effective search space used: 413285151080 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
49 |
AF (FL, S) |
4 |
SL (DIR, L) |
1 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |