Contig-U15306-1
Contig ID Contig-U15306-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15306-1 (Contig-U15306-1Q) /CSM_Contig/Contig-U15306-1Q.Seq.d
AAGCATAAACGGTGAATACCTCGACTCCTAAATCGATGAAGACCGTAGCA
AACTGCGATAATTCACTTGAATTGCAGCCTACTGGGATAGTTGAAATGTT
GAACGCACATGATGACATCGGTCCTTTCGGATTAGGTGTTATACTTGGGT
GAGAGTGGTCATTTTTTTGTTCACTCAAAAACATCTCTATTTTATTATAT
AAAAGCTACACATTGTAAATCCAAAATTTCATTACCTTTCAAAATGGAAA
ACCCATTCAATTCCAATACTTATAATAATAATTATAATAATACTAATTAT
AATAATAATAATAATTATTATTATAATAATAATAATAATTATAGTAATAA
TTATTATAATAATAATTATAATAATAATAATTTGAATAATAATTATACCA
GTTGTAGTAATCATCTCAACCTAACTCCTGAAGAATCTATGATTGATCAA
CCAAAGGAAAAAGAACAACCTATGCCTTTCTCTGCACAAGACAGAACTTT
GGCAGTTACTACACCGTCCAATCTAGCAATAGAATCTCAAGTTACCGATC
TGTTGAGAGAGGATGAGGAACCATCTGCTGATGCATCGCCAGCTACTACC
TTTTCCATACAATTAATCGCCAAAGGAGGGCATGTTATTTACCTTAACCA
TCCAAATGCTCAAGTAGCTACTCTCAAGGTTCAACTACCTGATACCGCAC
CATCCACTTTAGAATTACCATTACAAATAACTCCAGCAATAGACGTAAAG
CAACTTGCAATATCGACCCATGATTACCAAAAAAATCGGGTGAAGGTATG
CGTACCTCGATTAGATCCTAAGGGTAAAGGATATGTACGTATTGAAGCAT
ATGGTTTAAAAGGAGGATCAGGCGGTATAGAACTAGATACAGAGAAATTG
ATTACAGATATCGTATCAGGGTTCCATTTAGTAGGCATGCAGCCTTCTTC
GGAAATGATCAATAGTTGGCGTCCTTTTTTAAGAGACTTCTCTACTACAC
TCTCCAATATGACTCTGGACTTAAAGGATACCCCTTCTCCGATGTCAATT
AATTCTTATGATCCAGGTAACTATCGCAGTACCTTTGAGCGAATAGCGAG
TCATGCTACTAATAGAAGAATTACCCTCACACGATATGGGGCAGCCTACT
TGCATATCGTGAGCCAAATAAGAACAAAGATCAAACAACAGCAAAGCCTT
CCCATTGTCCCAGTTGAGTATCCTTCCCATAGCTATACCGGTAAGCTTAC
AACCCAACTTATTGCATATGCTACCCTTGGTGGCCTCGCTGAATCATCTC
TATGCTACGCCCATAGGAGGAGAATTTACCTTTGATGTAGGTAGTTTAAT
GCAGATAGCCCAGGTCGCTGTATGCTTTCATCCTGCTTTTTTAAATTTTG
AAAATTCTAAAAGAATTACTTCTACTGGCATCAACCTAGATGATTTACTC
ACTGCTGCTTTACAAGAAACCACTTTGCAAGAGACTGCAAGAAAGCAAAT
GGATCAACAAGCACAAGAAAAGATAAAAAAAACAGTAGGTGAGGTAAGTG
ATTCGCTAGAAAACATAGAACTAGTCATTGAAGATGCGAAAGAACAATGG
CAATCCTTGCATCCTCCCACAGATAACTACCCAGCATCTATGCAAGAAAT
CATCAAGGATTTGAAAGACATGCATACTTTACTAACTAAAAAACTCACCA
TTTTAGATGATTTAGCCGGTGCAGATGAGAAAATTCGGGCTAAACGCAAA
GAGCTGGTGGTAAAATCCACCAGGATGCAAGATGAAATCGATGTCCTACT
GCCTAAAATGCAGCAGGAACTGGAAAAGGTGAAGAGGGACGCACGTAGCA
CAAGAGTCTACCTTATTGGTTAGCCCCACAGGTAAAGGGATCCGTAATGC
CCCGTGGAGGACAAGGTCATTACGGTGCATCGAGAGGTGGTCGCAAACAT
ATGGGCATAGATTTTAGTTCAATAGTAGGACAGGATATTGTAGCGCCTAT
ATCTGGGAAAGTAGTCAATTTTAAAGGAGCTAGAACAAAGTATCCTATGT
TACAACTATATCCATCAAAAAAGTTCACAGAATTTGATTATCTACAAATG
TTATATGTTCATCCTCCAGTTGGAATCAATATGGGAGCTAGCTATCAAGT
ATCTGTTGGAGATACTATTGGTATAGCGGCAAATTTACAAGAATTAGGAT
ACTCGGTAGAAGTGACACCACATATTCATTTAGAACTAAAAAAGAATGTA
CCTGGTAAAGATCCTATAAGTATTGACCCCACTAAATTTTTCTTCAAGGT
AGTAAACCTATGCCTCTGTTTTTCAATTAGTGATAGTTTACTGTAGGCAA
ATTCATATCTTAATCACTTTTACAATTTTTAGAACTTCAAAAAATAGTAC
AAATTTTTTCAAATTAAGATAAAAAAAATAAAACAAAAATTAATTTAAAA
CA

Gap no gap
Contig length 2452
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3887051
End point 3889342
Strand (PLUS/MINUS) PLUS
Number of clones 54
Number of EST 91
Link to clone list U15306
List of clone(s)

est1=AHD895F,1,227
est2=AHP259F,4,337
est3=AHG477F,137,618
est4=AHL132F,140,728
est5=AHK116F,141,326
est6=AHO820F,149,705
est7=AHH809F,152,738
est8=AHI401F,152,615
est9=AHC850F,155,788
est10=AHB411F,157,665
est11=AHM215F,158,809
est12=AHP504F,158,525
est13=AHE442F,159,786
est14=AHJ466F,160,733
est15=AHO452F,160,733
est16=AHD192F,161,617
est17=AHD214F,161,735
est18=AHD779F,161,705
est19=AHE695F,161,712
est20=AHH446F,161,804
est21=AHI353F,161,622
est22=AHI881F,161,809
est23=AHJ833F,161,788
est24=AHK632F,161,811
est25=AHL347F,161,812
est26=AHN234F,161,788
est27=AHN637F,161,805
est28=AHQ841F,161,733
est29=AHJ132F,162,734
est30=AHN590F,164,786
est31=AHP158F,164,619
est32=AHE529F,169,707
est33=AHJ182F,169,809
est34=AHN753F,169,734
est35=AHD653F,170,666
est36=AHD690F,172,806
est37=AFK411F,173,1229
est38=AHA268F,173,805
est39=AHA873F,173,705
est40=AHC166F,173,743
est41=AHP806F,173,556
est42=AHQ421F,173,742
est43=AHA525F,183,796
est44=AHP193F,188,343
est45=AHF313F,263,865
est46=AHD388F,604,1250
est47=AFC792F,1009,1540
est48=SLD554F,1452,1756
est49=AHL686Z,1623,2344
est50=AHH446Z,1667,2442
est51=AHE529Z,1698,2401
est52=AFK411Z,1713,2350
est53=AFC792Z,1728,2441
est54=AHL347Z,1745,2332
est55=AHH809Z,1801,2452
est56=AHB529Z,1802,2393
est57=AHE695Z,1802,2412
est58=AHK116Z,1802,2364
est59=AHB411Z,1803,2452
est60=AHC166Z,1803,2452
est61=AHC850Z,1803,2452
est62=AHD192Z,1803,2452
est63=AHD388Z,1803,2452
est64=AHI353Z,1804,2442
est65=AHJ833Z,1804,2443
est66=AHM215Z,1804,2375
est67=AHN637Z,1804,2450
est68=AHD653Z,1805,2394
est69=AHE442Z,1806,2452
est70=AHN234Z,1806,2452
est71=AHQ841Z,1807,2293
est72=AFO320Z,1835,2417
est73=AHD690Z,1844,2331
est74=AHO620Z,1860,2410
est75=AHJ182Z,1861,2029
est76=AHQ421Z,1861,2331
est77=AHA873Z,1866,2452
est78=AHJ466Z,1866,2397
est79=AHA268Z,1867,2452
est80=AHP259Z,1869,2442
est81=AHP504Z,1874,2415
est82=AHJ132Z,1875,2395
est83=AHP158Z,1909,2426
est84=AHA525Z,1911,2448
est85=AHI401Z,1941,2293
est86=AHN753Z,1941,2452
est87=AHK632Z,2036,2153
est88=AHO252Z,2055,2175
est89=AFO640Z,2098,2201
est90=AHL132Z,2153,2448
est91=SLD554Z,2175,2452
Translated Amino Acid sequence
khkr*iprllnr*rp*qtaiihlncsllg*lkc*thmmtsvlsd*VLYLGESGHFFVHSK
TSLFYYIKATHCKSKISLPFKMENPFNSNTYNNNYNNTNYNNNNNYYYNNNNNYSNNYYN
NNYNNNNLNNNYTSCSNHLNLTPEESMIDQPKEKEQPMPFSAQDRTLAVTTPSNLAIESQ
VTDLLREDEEPSADASPATTFSIQLIAKGGHVIYLNHPNAQVATLKVQLPDTAPSTLELP
LQITPAIDVKQLAISTHDYQKNRVKVCVPRLDPKGKGYVRIEAYGLKGGSGGIELDTEKL
ITDIVSGFHLVGMQPSSEMINSWRPFLRDFSTTLSNMTLDLKDTPSPMSINSYDPGNYRS
TFERIASHATNRRITLTRYGAAYLHIVSQIRTKIKQQQSLPIVPVEYPSHSYTGKLTTQL
IAYATLGGLAESSLCYAHRRRIYL*cr*fnadspgrcmlsscffkf*kf*knyfywhqpr
*fthccftrnhfardckkangststrkdkknsr*gk*farkhrtsh*rcertmailassh
r*lpsiyarnhqgferhayftn*kthhfr*fsrcr*ensg*tqraggkihqdar*nrcpt
a*naagtgkgeegrt*hkslpywlapqvkgsvmprggqghygasrggrkhmgidfssivg
qdivapisgkvvnfkgartkypmlqlypskkftefdylqmlyvhppvginmgasyqvsvg
dtigiaanlqelgysvevtphihlelkknvpgkdpisidptkfffkvvnlclcfsisdsl
l*ansylnhfynf*nfkk*ykffqikikkikqkli*n


Translated Amino Acid sequence (All Frames)
Frame A:
khkr*iprllnr*rp*qtaiihlncsllg*lkc*thmmtsvlsd*VLYLGESGHFFVHSK
TSLFYYIKATHCKSKISLPFKMENPFNSNTYNNNYNNTNYNNNNNYYYNNNNNYSNNYYN
NNYNNNNLNNNYTSCSNHLNLTPEESMIDQPKEKEQPMPFSAQDRTLAVTTPSNLAIESQ
VTDLLREDEEPSADASPATTFSIQLIAKGGHVIYLNHPNAQVATLKVQLPDTAPSTLELP
LQITPAIDVKQLAISTHDYQKNRVKVCVPRLDPKGKGYVRIEAYGLKGGSGGIELDTEKL
ITDIVSGFHLVGMQPSSEMINSWRPFLRDFSTTLSNMTLDLKDTPSPMSINSYDPGNYRS
TFERIASHATNRRITLTRYGAAYLHIVSQIRTKIKQQQSLPIVPVEYPSHSYTGKLTTQL
IAYATLGGLAESSLCYAHRRRIYL*cr*fnadspgrcmlsscffkf*kf*knyfywhqpr
*fthccftrnhfardckkangststrkdkknsr*gk*farkhrtsh*rcertmailassh
r*lpsiyarnhqgferhayftn*kthhfr*fsrcr*ensg*tqraggkihqdar*nrcpt
a*naagtgkgeegrt*hkslpywlapqvkgsvmprggqghygasrggrkhmgidfssivg
qdivapisgkvvnfkgartkypmlqlypskkftefdylqmlyvhppvginmgasyqvsvg
dtigiaanlqelgysvevtphihlelkknvpgkdpisidptkfffkvvnlclcfsisdsl
l*ansylnhfynf*nfkk*ykffqikikkikqkli*n


Frame B:
singeylds*idedrsklr*ft*iaaywds*nvert**hrsfrircytwvrvviflftqk
hlyfii*klhivnpkfhylskwkthsipiliiiiiiiliiiiiiiiiiiiiiiiviiiii
iiiiiii*iiiipvvviist*llknl*linqrkknnlclslhktelwqllhrpi*q*nlk
lpic*ermrnhllmhrqllpfpyn*spkegmlftltiqmlk*llsrfnyliphhpl*nyh
yk*lqq*t*snlqyrpmitkkig*ryayld*ilrvkdmyvlkhmv*kedqav*n*iqrn*
lqisyqgsi**acsllrk*sivgvlf*etsllhspi*lwt*ripllrcqlilmiqvtiav
plse*rvmllieelpshdmgqptcis*ak*eqrsnnskafplsqlsilpiaipvslqpnl
lhmlplvaslnhlyatpiggeftfdvgslmqiaqvavcfhpaflnfenskritstginld
dlltaalqettlqetarkqmdqqaqekikktvgevsdslenielviedakeqwqslhppt
dnypasmqeiikdlkdmhtlltkkltilddlagadekirakrkelvvkstrmqdeidvll
pkmqqelekvkrdarstrvylig*phr*rdp*cpvedkvitvhrevvaniwa*ilvq**d
ril*rlylgk*silkeleqsilcynyihqkssqnliiykcymfilqlesiwelaikylle
illv*rqiykn*dtr*k*hhifi*n*krmylvkil*vltplnfssr**tyasvfqlvivy
crqihilitftifrtsknstnffklr*kk*nkn*fkt


Frame C:
a*tvntstpksmktvancdnslelqptgivemlnahddigpfglgvilg*ewsffcslkn
isillyksytl*iqnfitfqngkpiqfqyl***l**y*l*****lll*****l***ll**
*l****fe**lyql**ssqpns*riyd*stkgkrttyaflctrqnfgsyytvqssnriss
yrsverg*gtic*ciasyylfhtinrqrracylp*pskcsssysqgstt*yrtihfriti
tnnssnrrkatcnidp*lpkksgegmrtsirs*g*ricty*siwfkrrirryrtryreid
yryrirvpfsrhaaffgndq*lasffkrllyytlqydsglkgypfsdvn*fl*sr*lsqy
l*ansescy**knyphtiwgsllayrepnknkdqttakpshcps*vsfp*lyr*aynpty
cicypwwpr*iismlrp*eenlplm*vv*cr*prslyafillf*ilkilkellllast*m
iyslllykkplckrlqeskwinkhkkr*kkq*vr*vir*kt*n*slkmrknngnpcilpq
ittqhlckkssri*ktcily*lknspf*mi*pvqmrkfglnaksww*nppgckmksmsyc
lkcsrnwkr*rgthvaqestllvsptgkgirnapwrtrslrcierwsqtyghrf*fnsrt
gycsayiwessqf*rs*nkvsyvttisikkvhri*lstnvicsssswnqygs*lssicwr
yywysgkftririlgrsdttysfrtkkectw*rsyky*ph*iflqgskpmplffn***ft
vgkfis*sllqflelqkivqifsn*dkknktkinlk


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15306-1 (Contig-U15306-1Q)
/CSM_Contig/Contig-U15306-1Q.Seq.d
(2452 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15306-1 (Contig-U15306-1Q) /CSM_Contig/Conti... 3929 0.0
Contig-U16602-1 (Contig-U16602-1Q) /CSM_Contig/Conti... 319 1e-86
Contig-U16366-1 (Contig-U16366-1Q) /CSM_Contig/Conti... 319 1e-86
Contig-U16328-1 (Contig-U16328-1Q) /CSM_Contig/Conti... 319 1e-86
Contig-U16256-1 (Contig-U16256-1Q) /CSM_Contig/Conti... 319 1e-86
Contig-U15718-1 (Contig-U15718-1Q) /CSM_Contig/Conti... 319 1e-86
Contig-U15495-1 (Contig-U15495-1Q) /CSM_Contig/Conti... 319 1e-86
Contig-U14096-1 (Contig-U14096-1Q) /CSM_Contig/Conti... 319 1e-86
Contig-U13298-1 (Contig-U13298-1Q) /CSM_Contig/Conti... 319 1e-86
Contig-U15932-1 (Contig-U15932-1Q) /CSM_Contig/Conti... 315 2e-85

>Contig-U15306-1 (Contig-U15306-1Q) /CSM_Contig/Contig-U15306-1Q.Seq.d
Length = 2452

Score = 3929 bits (1982), Expect = 0.0
Identities = 2012/2027 (99%)
Strand = Plus / Plus


Query: 394 tataccagttgtagtaatcatctcaacctaactcctgaagaatctatgattgatcaacca 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tataccagttgtagtaatcatctcaacctaactcctgaagaatctatgattgatcaacca 453


Query: 454 aaggaaaaagaacaacctatgcctttctctgcacaagacagaactttggcagttactaca 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aaggaaaaagaacaacctatgcctttctctgcacaagacagaactttggcagttactaca 513


Query: 514 ccgtccaatctagcaatagaatctcaagttaccgatctgttgagagaggatgaggaacca 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ccgtccaatctagcaatagaatctcaagttaccgatctgttgagagaggatgaggaacca 573


Query: 574 tctgctgatgcatcgccagctactaccttttccatacaattaatcgccaaaggagggcat 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tctgctgatgcatcgccagctactaccttttccatacaattaatcgccaaaggagggcat 633


Query: 634 gttatttaccttaaccatccaaatgctcaagtagctactctcaaggttcaactacctgat 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gttatttaccttaaccatccaaatgctcaagtagctactctcaaggttcaactacctgat 693


Query: 694 accgcaccatccactttagaattaccattacaaataactccagcaatagacgtaaagcaa 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 accgcaccatccactttagaattaccattacaaataactccagcaatagacgtaaagcaa 753


Query: 754 cttgcaatatcgacccatgattaccnnnnnnntcgggtgaaggtatgcgtacctcgatta 813
||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 754 cttgcaatatcgacccatgattaccaaaaaaatcgggtgaaggtatgcgtacctcgatta 813


Query: 814 gatcctaagggtaaaggatatgtacgtattgaagcatatggtttaaaaggaggatcaggc 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 gatcctaagggtaaaggatatgtacgtattgaagcatatggtttaaaaggaggatcaggc 873


Query: 874 ggtatagaactagatacagagaaattgattacagatatcgtatcagggttccatttagta 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 ggtatagaactagatacagagaaattgattacagatatcgtatcagggttccatttagta 933


Query: 934 ggcatgcagccttcttcggaaatgatcaatagttggcgtccttttttaagagacttctct 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 ggcatgcagccttcttcggaaatgatcaatagttggcgtccttttttaagagacttctct 993


Query: 994 actacactctccaatatgactctggacttaaaggataccccttctccgatgtcaattaat 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 actacactctccaatatgactctggacttaaaggataccccttctccgatgtcaattaat 1053


Query: 1054 tcttatgatccaggtaactatcgcagtacctttgagcgaatagcgagtcatgctactaat 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 tcttatgatccaggtaactatcgcagtacctttgagcgaatagcgagtcatgctactaat 1113


Query: 1114 agaagaattaccctcacacgatatggggcagcctacttgcatatcgtgagccaaataaga 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1114 agaagaattaccctcacacgatatggggcagcctacttgcatatcgtgagccaaataaga 1173


Query: 1174 acaaagatcaaacaacagcaaagccttcccattgtcccagttgagtatccttcccatagc 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1174 acaaagatcaaacaacagcaaagccttcccattgtcccagttgagtatccttcccatagc 1233


Query: 1234 tataccggtaagcttacaacccaacttattgcatatgctacccttggtggcctcgctgaa 1293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1234 tataccggtaagcttacaacccaacttattgcatatgctacccttggtggcctcgctgaa 1293


Query: 1294 tcatctctatgctacgcccataggaggagaatttacctttgatgtaggtagtttaatgca 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1294 tcatctctatgctacgcccataggaggagaatttacctttgatgtaggtagtttaatgca 1353


Query: 1354 gatagcccaggtcgctgtatgctttcatcctgcttttttaaattttgaaaattctaaaag 1413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1354 gatagcccaggtcgctgtatgctttcatcctgcttttttaaattttgaaaattctaaaag 1413


Query: 1414 aattacttctactggcatcaacctagatgatttactcactgctgctttacaagaaaccac 1473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1414 aattacttctactggcatcaacctagatgatttactcactgctgctttacaagaaaccac 1473


Query: 1474 tttgcaagagactgcaagaaagcaaatggatcaacaagcacaagaaaagatnnnnnnnnc 1533
||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1474 tttgcaagagactgcaagaaagcaaatggatcaacaagcacaagaaaagataaaaaaaac 1533


Query: 1534 agtaggtgaggtaagtgattcgctagaaaacatagaactagtcattgaagatgcgaaaga 1593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1534 agtaggtgaggtaagtgattcgctagaaaacatagaactagtcattgaagatgcgaaaga 1593


Query: 1594 acaatggcaatccttgcatcctcccacagataactacccagcatctatgcaagaaatcat 1653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1594 acaatggcaatccttgcatcctcccacagataactacccagcatctatgcaagaaatcat 1653


Query: 1654 caaggatttgaaagacatgcatactttactaactaaaaaactcaccattttagatgattt 1713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1654 caaggatttgaaagacatgcatactttactaactaaaaaactcaccattttagatgattt 1713


Query: 1714 agccggtgcagatgagaaaattcgggctaaacgcaaagagctggtggtaaaatccaccag 1773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1714 agccggtgcagatgagaaaattcgggctaaacgcaaagagctggtggtaaaatccaccag 1773


Query: 1774 gatgcaagatgaaatcgatgtcctactgcctaaaatgcagcaggaactggaaaaggtgaa 1833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1774 gatgcaagatgaaatcgatgtcctactgcctaaaatgcagcaggaactggaaaaggtgaa 1833


Query: 1834 gagggacgcacgtagcacaagagtctaccttattggttagccccacaggtaaagggatcc 1893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1834 gagggacgcacgtagcacaagagtctaccttattggttagccccacaggtaaagggatcc 1893


Query: 1894 gtaatgccccgtggaggacaaggtcattacggtgcatcgagaggtggtcgcaaacatatg 1953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1894 gtaatgccccgtggaggacaaggtcattacggtgcatcgagaggtggtcgcaaacatatg 1953


Query: 1954 ggcatagattttagttcaatagtaggacaggatattgtagcgcctatatctgggaaagta 2013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1954 ggcatagattttagttcaatagtaggacaggatattgtagcgcctatatctgggaaagta 2013


Query: 2014 gtcaattttaaaggagctagaacaaagtatcctatgttacaactatatccatcaaaaaag 2073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2014 gtcaattttaaaggagctagaacaaagtatcctatgttacaactatatccatcaaaaaag 2073


Query: 2074 ttcacagaatttgattatctacaaatgttatatgttcatcctccagttggaatcaatatg 2133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2074 ttcacagaatttgattatctacaaatgttatatgttcatcctccagttggaatcaatatg 2133


Query: 2134 ggagctagctatcaagtatctgttggagatactattggtatagcggcaaatttacaagaa 2193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2134 ggagctagctatcaagtatctgttggagatactattggtatagcggcaaatttacaagaa 2193


Query: 2194 ttaggatactcggtagaagtgacaccacatattcatttagaactaaaaaagaatgtacct 2253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2194 ttaggatactcggtagaagtgacaccacatattcatttagaactaaaaaagaatgtacct 2253


Query: 2254 ggtaaagatcctataagtattgaccccactaaatttttcttcaaggtagtaaacctatgc 2313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2254 ggtaaagatcctataagtattgaccccactaaatttttcttcaaggtagtaaacctatgc 2313


Query: 2314 ctctgtttttcaattagtgatagtttactgtaggcaaattcatatcttaatcacttttac 2373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2314 ctctgtttttcaattagtgatagtttactgtaggcaaattcatatcttaatcacttttac 2373


Query: 2374 aatttttagaacttcaaaaaatagtacaaattttttcaaattaagat 2420
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2374 aatttttagaacttcaaaaaatagtacaaattttttcaaattaagat 2420


Score = 482 bits (243), Expect = e-135
Identities = 257/264 (97%)
Strand = Plus / Plus


Query: 1 aagcataaacggtgaatacctcgactcctaaatcgatgaagaccgtagcaaactgcgata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagcataaacggtgaatacctcgactcctaaatcgatgaagaccgtagcaaactgcgata 60


Query: 61 attcacttgaattgcagcctactgggatagttgaaatgttgaacgcacatgatgacatcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attcacttgaattgcagcctactgggatagttgaaatgttgaacgcacatgatgacatcg 120


Query: 121 gtcctttcggattaggtgttatacttgggtgagagtggtcannnnnnngttcactcaaaa 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 121 gtcctttcggattaggtgttatacttgggtgagagtggtcatttttttgttcactcaaaa 180


Query: 181 acatctctattttattatataaaagctacacattgtaaatccaaaatttcattacctttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acatctctattttattatataaaagctacacattgtaaatccaaaatttcattacctttc 240


Query: 241 aaaatggaaaacccattcaattcc 264
||||||||||||||||||||||||
Sbjct: 241 aaaatggaaaacccattcaattcc 264


>Contig-U16602-1 (Contig-U16602-1Q) /CSM_Contig/Contig-U16602-1Q.Seq.d
Length = 1355

Score = 319 bits (161), Expect = 1e-86
Identities = 161/161 (100%)
Strand = Plus / Plus


Query: 1 aagcataaacggtgaatacctcgactcctaaatcgatgaagaccgtagcaaactgcgata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 aagcataaacggtgaatacctcgactcctaaatcgatgaagaccgtagcaaactgcgata 111


Query: 61 attcacttgaattgcagcctactgggatagttgaaatgttgaacgcacatgatgacatcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 attcacttgaattgcagcctactgggatagttgaaatgttgaacgcacatgatgacatcg 171


Query: 121 gtcctttcggattaggtgttatacttgggtgagagtggtca 161
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 gtcctttcggattaggtgttatacttgggtgagagtggtca 212


>Contig-U16366-1 (Contig-U16366-1Q) /CSM_Contig/Contig-U16366-1Q.Seq.d
Length = 2619

Score = 319 bits (161), Expect = 1e-86
Identities = 161/161 (100%)
Strand = Plus / Plus


Query: 1 aagcataaacggtgaatacctcgactcctaaatcgatgaagaccgtagcaaactgcgata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagcataaacggtgaatacctcgactcctaaatcgatgaagaccgtagcaaactgcgata 60


Query: 61 attcacttgaattgcagcctactgggatagttgaaatgttgaacgcacatgatgacatcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attcacttgaattgcagcctactgggatagttgaaatgttgaacgcacatgatgacatcg 120


Query: 121 gtcctttcggattaggtgttatacttgggtgagagtggtca 161
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtcctttcggattaggtgttatacttgggtgagagtggtca 161


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,671
Number of Sequences: 8402
Number of extensions: 20671
Number of successful extensions: 2030
Number of sequences better than 10.0: 102
length of query: 2452
length of database: 8,075,542
effective HSP length: 17
effective length of query: 2435
effective length of database: 7,932,708
effective search space: 19316143980
effective search space used: 19316143980
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 1.18
Homology vs DNA
Query= Contig-U15306-1 (Contig-U15306-1Q) /CSM_Contig/Contig-U15306-1Q.Seq.d
(2452 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ332033) Dictyostelium discoideum cDNA clone:dda37p21, 5' ... 922 0.0 2
(BJ347372) Dictyostelium discoideum cDNA clone:dda26l23, 3' ... 827 0.0 2
(BJ354830) Dictyostelium discoideum cDNA clone:dda54k22, 3' ... 785 0.0 4
(BJ352030) Dictyostelium discoideum cDNA clone:dda45l12, 3' ... 785 0.0 5
(BJ350576) Dictyostelium discoideum cDNA clone:dda40i07, 3' ... 785 0.0 5
(BJ341481) Dictyostelium discoideum cDNA clone:dda6h23, 3' e... 779 0.0 5
(BJ347255) Dictyostelium discoideum cDNA clone:dda26f16, 3' ... 777 0.0 5
(BJ355830) Dictyostelium discoideum cDNA clone:dda58i10, 3' ... 773 0.0 5
(BJ349448) Dictyostelium discoideum cDNA clone:dda36d14, 3' ... 761 0.0 5
(BJ346836) Dictyostelium discoideum cDNA clone:dda25a09, 3' ... 720 0.0 2
(BJ344942) Dictyostelium discoideum cDNA clone:dda21f04, 3' ... 662 0.0 5
(BJ349887) Dictyostelium discoideum cDNA clone:dda37p21, 3' ... 755 0.0 5
(BJ349845) Dictyostelium discoideum cDNA clone:dda37g23, 3' ... 755 0.0 5
(BJ350266) Dictyostelium discoideum cDNA clone:dda39d12, 3' ... 761 0.0 5
(BJ349141) Dictyostelium discoideum cDNA clone:dda35c17, 3' ... 761 0.0 5
(BJ354382) Dictyostelium discoideum cDNA clone:dda53n11, 3' ... 708 0.0 3
(BJ348384) Dictyostelium discoideum cDNA clone:dda33f04, 3' ... 745 0.0 5
(BJ352701) Dictyostelium discoideum cDNA clone:dda47j13, 3' ... 789 0.0 4
(BJ350756) Dictyostelium discoideum cDNA clone:dda40m24, 3' ... 817 0.0 4
(BJ332997) Dictyostelium discoideum cDNA clone:dda41j03, 5' ... 755 0.0 3
(BJ355490) Dictyostelium discoideum cDNA clone:dda57c10, 3' ... 733 0.0 5
(BJ329969) Dictyostelium discoideum cDNA clone:dda26l23, 5' ... 755 0.0 2
(BJ352203) Dictyostelium discoideum cDNA clone:dda46b04, 3' ... 535 0.0 6
(BJ324548) Dictyostelium discoideum cDNA clone:dda6h23, 5' e... 567 0.0 2
(BJ353458) Dictyostelium discoideum cDNA clone:dda50b10, 3' ... 769 0.0 5
(BJ346097) Dictyostelium discoideum cDNA clone:dda29h05, 3' ... 785 0.0 4
(BJ354921) Dictyostelium discoideum cDNA clone:dda55m04, 3' ... 733 0.0 5
(BJ353717) Dictyostelium discoideum cDNA clone:dda51o03, 3' ... 733 0.0 5
(BJ348784) Dictyostelium discoideum cDNA clone:dda34i07, 3' ... 763 0.0 4
(BJ327598) Dictyostelium discoideum cDNA clone:dda21f04, 5' ... 755 0.0 3
(BJ336304) Dictyostelium discoideum cDNA clone:dda53n11, 5' ... 755 0.0 3
(BJ336022) Dictyostelium discoideum cDNA clone:dda52o08, 5' ... 755 0.0 3
(BJ350072) Dictyostelium discoideum cDNA clone:dda38i14, 3' ... 684 0.0 4
(BJ335319) Dictyostelium discoideum cDNA clone:dda49c21, 5' ... 755 0.0 3
(BJ335053) Dictyostelium discoideum cDNA clone:dda48b22, 5' ... 755 0.0 3
(BJ337687) Dictyostelium discoideum cDNA clone:dda58i10, 5' ... 755 0.0 3
(BJ336798) Dictyostelium discoideum cDNA clone:dda55m04, 5' ... 755 0.0 3
(BJ334178) Dictyostelium discoideum cDNA clone:dda45l12, 5' ... 755 0.0 3
(BJ356978) Dictyostelium discoideum cDNA clone:dda62g01, 3' ... 785 0.0 4
(BJ332336) Dictyostelium discoideum cDNA clone:dda38c24, 5' ... 755 0.0 3
(BJ356820) Dictyostelium discoideum cDNA clone:dda61e16, 3' ... 771 0.0 4
(BJ356362) Dictyostelium discoideum cDNA clone:dda60g06, 3' ... 819 0.0 3
(BJ348281) Dictyostelium discoideum cDNA clone:dda32b20, 3' ... 747 0.0 4
(BJ339628) Dictyostelium discoideum cDNA clone:dda58c23, 5' ... 755 0.0 2
(BJ332485) Dictyostelium discoideum cDNA clone:dda39d12, 5' ... 755 0.0 2
(BJ330444) Dictyostelium discoideum cDNA clone:dda31g18, 5' ... 755 0.0 3
(BJ329500) Dictyostelium discoideum cDNA clone:dda25a09, 5' ... 755 0.0 3
(BJ330136) Dictyostelium discoideum cDNA clone:dda27b13, 5' ... 755 0.0 3
(BJ337392) Dictyostelium discoideum cDNA clone:dda57c10, 5' ... 755 0.0 2
(BJ331651) Dictyostelium discoideum cDNA clone:dda36d14, 5' ... 755 0.0 2
(BJ335445) Dictyostelium discoideum cDNA clone:dda50b10, 5' ... 755 0.0 2
(BJ330633) Dictyostelium discoideum cDNA clone:dda32a07, 5' ... 755 0.0 2
(BJ347910) Dictyostelium discoideum cDNA clone:dda31g18, 3' ... 702 0.0 4
(BJ353264) Dictyostelium discoideum cDNA clone:dda49d18, 3' ... 710 0.0 4
(BJ329864) Dictyostelium discoideum cDNA clone:dda26f16, 5' ... 755 0.0 3
(BJ331469) Dictyostelium discoideum cDNA clone:dda35c17, 5' ... 686 0.0 2
(BJ338811) Dictyostelium discoideum cDNA clone:dda63j06, 5' ... 684 0.0 2
(BJ332081) Dictyostelium discoideum cDNA clone:dda37k04, 5' ... 670 0.0 2
(BJ337756) Dictyostelium discoideum cDNA clone:dda58j13, 5' ... 668 0.0 2
(BJ335235) Dictyostelium discoideum cDNA clone:dda49o07, 5' ... 668 0.0 2
(BJ339129) Dictyostelium discoideum cDNA clone:dda64b12, 5' ... 666 0.0 2
(BJ357649) Dictyostelium discoideum cDNA clone:dda64b12, 3' ... 678 0.0 3
(BJ335259) Dictyostelium discoideum cDNA clone:dda49d18, 5' ... 666 0.0 2
(BJ336305) Dictyostelium discoideum cDNA clone:dda53o07, 5' ... 656 0.0 2
(BJ356810) Dictyostelium discoideum cDNA clone:dda61c15, 3' ... 718 0.0 3
(BJ337962) Dictyostelium discoideum cDNA clone:dda59h14, 5' ... 666 0.0 2
(BJ334344) Dictyostelium discoideum cDNA clone:dda46b04, 5' ... 642 0.0 2
(BJ353238) Dictyostelium discoideum cDNA clone:dda49o07, 3' ... 680 0.0 4
(BJ332816) Dictyostelium discoideum cDNA clone:dda40m24, 5' ... 624 0.0 2
(BJ355909) Dictyostelium discoideum cDNA clone:dda58j13, 3' ... 656 0.0 3
(BJ332919) Dictyostelium discoideum cDNA clone:dda40i07, 5' ... 615 0.0 2
(BJ338103) Dictyostelium discoideum cDNA clone:dda60h06, 5' ... 611 0.0 2
(BJ330783) Dictyostelium discoideum cDNA clone:dda32b20, 5' ... 611 0.0 2
(BJ347571) Dictyostelium discoideum cDNA clone:dda27b13, 3' ... 684 0.0 3
(BJ350114) Dictyostelium discoideum cDNA clone:dda38c24, 3' ... 646 0.0 3
(BJ332384) Dictyostelium discoideum cDNA clone:dda38n19, 5' ... 611 0.0 2
(BJ348111) Dictyostelium discoideum cDNA clone:dda32a07, 3' ... 658 0.0 3
(BJ357308) Dictyostelium discoideum cDNA clone:dda63j06, 3' ... 597 0.0 3
(BJ332291) Dictyostelium discoideum cDNA clone:dda38i14, 5' ... 519 0.0 2
(BJ352508) Dictyostelium discoideum cDNA clone:dda47b02, 3' ... 591 e-174 2
(BJ330869) Dictyostelium discoideum cDNA clone:dda33f04, 5' ... 458 e-167 2
(BJ333743) Dictyostelium discoideum cDNA clone:dda43j20, 5' ... 438 e-167 2
(BJ338433) Dictyostelium discoideum cDNA clone:dda61c15, 5' ... 440 e-165 2
(BJ334568) Dictyostelium discoideum cDNA clone:dda47b02, 5' ... 432 e-165 2
(BJ331989) Dictyostelium discoideum cDNA clone:dda37g23, 5' ... 436 e-164 2
(BJ334737) Dictyostelium discoideum cDNA clone:dda47j13, 5' ... 438 e-164 2
(AU061217) Dictyostelium discoideum slug cDNA, clone SLD554. 444 e-157 2
(BJ338443) Dictyostelium discoideum cDNA clone:dda61e16, 5' ... 313 e-131 2
(BJ338588) Dictyostelium discoideum cDNA clone:dda62l02, 5' ... 315 e-127 2
(BJ354384) Dictyostelium discoideum cDNA clone:dda53o07, 3' ... 287 e-110 3
(BJ338574) Dictyostelium discoideum cDNA clone:dda62g01, 5' ... 236 e-104 2
(AU052586) Dictyostelium discoideum slug cDNA, clone SLD554. 244 2e-92 3
(BJ396385) Dictyostelium discoideum cDNA clone:dds42b20, 5' ... 319 3e-82 1
(BJ391015) Dictyostelium discoideum cDNA clone:dds14m15, 5' ... 319 3e-82 1
(BJ388083) Dictyostelium discoideum cDNA clone:dds7f24, 5' e... 319 3e-82 1
(BJ387961) Dictyostelium discoideum cDNA clone:dds7k02, 5' e... 319 3e-82 1
(BJ359760) Dictyostelium discoideum cDNA clone:ddc2k09, 5' e... 319 3e-82 1
(BJ338142) Dictyostelium discoideum cDNA clone:dda60c07, 5' ... 319 3e-82 1
(BJ333022) Dictyostelium discoideum cDNA clone:dda41o05, 5' ... 319 3e-82 1
(BJ332389) Dictyostelium discoideum cDNA clone:dda38n24, 5' ... 319 3e-82 1

>(BJ332033) Dictyostelium discoideum cDNA clone:dda37p21, 5' end,
single read.
Length = 647

Score = 922 bits (465), Expect(2) = 0.0
Identities = 465/465 (100%)
Strand = Plus / Plus


Query: 786 tcgggtgaaggtatgcgtacctcgattagatcctaagggtaaaggatatgtacgtattga 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tcgggtgaaggtatgcgtacctcgattagatcctaagggtaaaggatatgtacgtattga 242


Query: 846 agcatatggtttaaaaggaggatcaggcggtatagaactagatacagagaaattgattac 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agcatatggtttaaaaggaggatcaggcggtatagaactagatacagagaaattgattac 302


Query: 906 agatatcgtatcagggttccatttagtaggcatgcagccttcttcggaaatgatcaatag 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 agatatcgtatcagggttccatttagtaggcatgcagccttcttcggaaatgatcaatag 362


Query: 966 ttggcgtccttttttaagagacttctctactacactctccaatatgactctggacttaaa 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ttggcgtccttttttaagagacttctctactacactctccaatatgactctggacttaaa 422


Query: 1026 ggataccccttctccgatgtcaattaattcttatgatccaggtaactatcgcagtacctt 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ggataccccttctccgatgtcaattaattcttatgatccaggtaactatcgcagtacctt 482


Query: 1086 tgagcgaatagcgagtcatgctactaatagaagaattaccctcacacgatatggggcagc 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tgagcgaatagcgagtcatgctactaatagaagaattaccctcacacgatatggggcagc 542


Query: 1146 ctacttgcatatcgtgagccaaataagaacaaagatcaaacaacagcaaagccttcccat 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ctacttgcatatcgtgagccaaataagaacaaagatcaaacaacagcaaagccttcccat 602


Query: 1206 tgtcccagttgagtatccttcccatagctataccggtaagcttac 1250
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tgtcccagttgagtatccttcccatagctataccggtaagcttac 647

Score = 347 bits (175), Expect(2) = 0.0
Identities = 175/175 (100%)
Strand = Plus / Plus


Query: 604 tccatacaattaatcgccaaaggagggcatgttatttaccttaaccatccaaatgctcaa 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccatacaattaatcgccaaaggagggcatgttatttaccttaaccatccaaatgctcaa 60


Query: 664 gtagctactctcaaggttcaactacctgataccgcaccatccactttagaattaccatta 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtagctactctcaaggttcaactacctgataccgcaccatccactttagaattaccatta 120


Query: 724 caaataactccagcaatagacgtaaagcaacttgcaatatcgacccatgattacc 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caaataactccagcaatagacgtaaagcaacttgcaatatcgacccatgattacc 175

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 2,254,272,775
Number of extensions: 121959575
Number of successful extensions: 9637859
Number of sequences better than 10.0: 1091
Length of query: 2452
Length of database: 98,766,808,389
Length adjustment: 25
Effective length of query: 2427
Effective length of database: 100,606,115,110
Effective search space: 244171041371970
Effective search space used: 244171041371970
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)

protein update 2009. 7.15
Homology vs Protein
Query= Contig-U15306-1 (Contig-U15306-1Q) /CSM_Contig/Contig-U15306-1Q.Seq.d
(2452 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

CP000927_1285(CP000927|pid:none) Caulobacter sp. K31, complete g... 54 4e-05
CP001102_791(CP001102|pid:none) Candidatus Amoebophilus asiaticu... 50 3e-04
CU207366_3486(CU207366|pid:none) Gramella forsetii KT0803 comple... 49 9e-04
EU325849_1(EU325849|pid:none) Oncorhynchus masou formosanus LECT... 49 0.001
BT073541_1(BT073541|pid:none) Oncorhynchus mykiss clone omyk-evn... 47 0.003
AF271114_1(AF271114|pid:none) Oncorhynchus mykiss chemotaxin mRN... 47 0.003
AF363272_1(AF363272|pid:none) Oncorhynchus mykiss LECT2 neutroph... 47 0.004
BT047251_1(BT047251|pid:none) Salmo salar clone ssal-evf-542-352... 46 0.007
BT048115_1(BT048115|pid:none) Salmo salar clone ssal-evf-552-377... 45 0.013
AE008692_216(AE008692|pid:none) Zymomonas mobilis subsp. mobilis... 43 0.062
CU207211_233(CU207211|pid:none) Herminiimonas arsenicoxydans chr... 42 0.081
CP000348_79(CP000348|pid:none) Leptospira borgpetersenii serovar... 42 0.11
BT049789_1(BT049789|pid:none) Salmo salar clone ssal-evf-518-213... 42 0.11
CP000350_2605(CP000350|pid:none) Leptospira borgpetersenii serov... 42 0.11
BA000012_1835(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 41 0.18
CP001393_2343(CP001393|pid:none) Anaerocellum thermophilum DSM 6... 41 0.18
CP000269_301(CP000269|pid:none) Janthinobacterium sp. Marseille,... 41 0.24
CP000492_515(CP000492|pid:none) Chlorobium phaeobacteroides DSM ... 40 0.40
DQ875742_33(DQ875742|pid:none) Cyanophage Pf-WMP4, complete geno... 40 0.40
AE010300_4308(AE010300|pid:none) Leptospira interrogans serovar ... 40 0.40
EU136177_1(EU136177|pid:none) Lates calcarifer leukocyte cell-de... 40 0.40
CP001635_4615(CP001635|pid:none) Variovorax paradoxus S110 chrom... 40 0.53
CT978603_1236(CT978603|pid:none) Synechococcus sp. RCC307 genomi... 40 0.53
CP000655_462(CP000655|pid:none) Polynucleobacter necessarius sub... 40 0.53
CP001010_1131(CP001010|pid:none) Polynucleobacter necessarius su... 40 0.53
CP000680_923(CP000680|pid:none) Pseudomonas mendocina ymp, compl... 40 0.53
CP000828_4025(CP000828|pid:none) Acaryochloris marina MBIC11017,... 39 0.69
CP001287_2128(CP001287|pid:none) Cyanothece sp. PCC 8801, comple... 39 0.69
BX842656_177(BX842656|pid:none) Bdellovibrio bacteriovorus compl... 39 0.69
CP001102_379(CP001102|pid:none) Candidatus Amoebophilus asiaticu... 39 0.69
BA000039_1181(BA000039|pid:none) Thermosynechococcus elongatus B... 39 0.69
AM412317_3612(AM412317|pid:none) Clostridium botulinum A str. AT... 39 0.90
CP000671_177(CP000671|pid:none) Haemophilus influenzae PittEE, c... 39 0.90
CP000724_4584(CP000724|pid:none) Alkaliphilus metalliredigens QY... 39 0.90
(P44693) RecName: Full=Uncharacterized metalloprotease HI0409; ... 39 0.90
CP000606_3439(CP000606|pid:none) Shewanella loihica PV-4, comple... 39 1.2
BX950851_2459(BX950851|pid:none) Erwinia carotovora subsp. atros... 39 1.2
CR555306_498(CR555306|pid:none) Azoarcus sp. EbN1 complete genome. 39 1.2
CP000447_3760(CP000447|pid:none) Shewanella frigidimarina NCIMB ... 38 1.5
CP000448_239(CP000448|pid:none) Syntrophomonas wolfei subsp. wol... 38 1.5
CP001102_511(CP001102|pid:none) Candidatus Amoebophilus asiaticu... 38 1.5
FJ502111_1(FJ502111|pid:none) Aristichthys nobilis clone B120 le... 38 1.5
CP000316_4033(CP000316|pid:none) Polaromonas sp. JS666, complete... 38 2.0
CP000777_592(CP000777|pid:none) Leptospira biflexa serovar Patoc... 38 2.0
CP000850_4051(CP000850|pid:none) Salinispora arenicola CNS-205, ... 38 2.0
CP000361_1604(CP000361|pid:none) Arcobacter butzleri RM4018, com... 38 2.0
CP000901_2194(CP000901|pid:none) Yersinia pestis Angola, complet... 38 2.0
AE009952_2212(AE009952|pid:none) Yersinia pestis KIM, complete g... 38 2.0
AF0251(AF0251) probable M23/M37 peptidase-family protein YPO2062... 38 2.0
BX571657_245(BX571657|pid:none) Wolinella succinogenes, complete... 38 2.0
AE007869_1791(AE007869|pid:none) Agrobacterium tumefaciens str. ... 37 2.6
AP009351_1895(AP009351|pid:none) Staphylococcus aureus subsp. au... 37 2.6
AP006618_3124(AP006618|pid:none) Nocardia farcinica IFM 10152 DN... 37 2.6
CP000507_360(CP000507|pid:none) Shewanella amazonensis SB2B, com... 37 2.6
CP000529_499(CP000529|pid:none) Polaromonas naphthalenivorans CJ... 37 2.6
CP000494_3720(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 37 2.6
CP000569_1902(CP000569|pid:none) Actinobacillus pleuropneumoniae... 37 2.6
CP000703_1980(CP000703|pid:none) Staphylococcus aureus subsp. au... 37 2.6
CP000096_1608(CP000096|pid:none) Pelodictyon luteolum DSM 273, c... 37 2.6
CP000923_2281(CP000923|pid:none) Thermoanaerobacter sp. X514, co... 37 2.6
CP000264_2529(CP000264|pid:none) Jannaschia sp. CCS1, complete g... 37 2.6
AP009324_1942(AP009324|pid:none) Staphylococcus aureus subsp. au... 37 2.6
AE016825_2477(AE016825|pid:none) Chromobacterium violaceum ATCC ... 37 2.6
BC162786_1(BC162786|pid:none) Danio rerio leukocyte cell-derived... 37 2.6
CP000255_1859(CP000255|pid:none) Staphylococcus aureus subsp. au... 37 2.6
CP000730_1912(CP000730|pid:none) Staphylococcus aureus subsp. au... 37 2.6
B89985(B89985) hypothetical protein SA1766 [imported] - Staphylo... 37 2.6
AY508486_14(AY508486|pid:none) Bacteriophage 77, complete genome. 37 2.6
CP000667_3762(CP000667|pid:none) Salinispora tropica CNB-440, co... 37 2.6
AY322150_5(AY322150|pid:none) Enterococcus faecium isolate E300 ... 37 2.6
CP000812_739(CP000812|pid:none) Thermotoga lettingae TMO, comple... 37 3.4
BX547941_2(BX547941|pid:none) Zebrafish DNA sequence from clone ... 37 3.4
CP000853_2753(CP000853|pid:none) Alkaliphilus oremlandii OhILAs,... 37 3.4
CP000923_1023(CP000923|pid:none) Thermoanaerobacter sp. X514, co... 37 3.4
CP000607_417(CP000607|pid:none) Chlorobium phaeovibrioides DSM 2... 37 3.4
CP000302_669(CP000302|pid:none) Shewanella denitrificans OS217, ... 37 4.5
CP000667_3933(CP000667|pid:none) Salinispora tropica CNB-440, co... 37 4.5
CP000771_1620(CP000771|pid:none) Fervidobacterium nodosum Rt17-B... 37 4.5
CP001147_1990(CP001147|pid:none) Thermodesulfovibrio yellowstoni... 37 4.5
CP000612_3245(CP000612|pid:none) Desulfotomaculum reducens MI-1,... 37 4.5
CP000232_2313(CP000232|pid:none) Moorella thermoacetica ATCC 390... 36 5.8
AM286278_67(AM286278|pid:none) Arthrobacter nitroguajacolicus pA... 36 5.8
CP000435_1293(CP000435|pid:none) Synechococcus sp. CC9311, compl... 36 5.8
BX548175_898(BX548175|pid:none) Prochlorococcus marinus MIT9313 ... 36 5.8
CP000453_432(CP000453|pid:none) Alkalilimnicola ehrlichii MLHE-1... 36 5.8
CP001022_531(CP001022|pid:none) Exiguobacterium sibiricum 255-15... 36 5.8
BX842647_24(BX842647|pid:none) Bdellovibrio bacteriovorus comple... 36 5.8
CP001102_636(CP001102|pid:none) Candidatus Amoebophilus asiaticu... 36 5.8
AM180252_406(AM180252|pid:none) Lawsonia intracellularis PHE/MN1... 36 5.8
CP000769_781(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, co... 36 5.8
CP000884_5887(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 36 5.8
CP000885_3563(CP000885|pid:none) Clostridium phytofermentans ISD... 36 5.8
AE010300_1605(AE010300|pid:none) Leptospira interrogans serovar ... 36 5.8
AP009493_3984(AP009493|pid:none) Streptomyces griseus subsp. gri... 36 5.8
CP000860_2090(CP000860|pid:none) Candidatus Desulforudis audaxvi... 36 7.6
CP000282_853(CP000282|pid:none) Saccharophagus degradans 2-40, c... 36 7.6
AM260479_824(AM260479|pid:none) Ralstonia eutropha H16 chromosom... 36 7.6
CP000826_2763(CP000826|pid:none) Serratia proteamaculans 568, co... 36 7.6
AM286415_2264(AM286415|pid:none) Yersinia enterocolitica subsp. ... 36 7.6
CP001357_839(CP001357|pid:none) Brachyspira hyodysenteriae WA1, ... 36 7.6
BA000030_4125(BA000030|pid:none) Streptomyces avermitilis MA-468... 36 7.6
(P12847) RecName: Full=Myosin-3; AltName: Full=Myosin heavy chai... 35 10.0
CP001110_594(CP001110|pid:none) Pelodictyon phaeoclathratiforme ... 35 10.0
CP000820_5859(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 35 10.0
CP000155_1790(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 35 10.0
CP001196_1959(CP001196|pid:none) Oligotropha carboxidovorans OM5... 35 10.0
CP000416_1043(CP000416|pid:none) Lactobacillus brevis ATCC 367, ... 35 10.0
CP000542_2594(CP000542|pid:none) Verminephrobacter eiseniae EF01... 35 10.0
CU468135_1494(CU468135|pid:none) Erwinia tasmaniensis strain ET1... 35 10.0
EU730897_11(EU730897|pid:none) Brachypodium distachyon clone BAC... 35 10.0
AE008691_2493(AE008691|pid:none) Thermoanaerobacter tengcongensi... 35 10.0
CT971583_1120(CT971583|pid:none) Synechococcus WH7803 complete g... 35 10.0
CP000934_2853(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 35 10.0
BA000030_4514(BA000030|pid:none) Streptomyces avermitilis MA-468... 35 10.0
CP001022_532(CP001022|pid:none) Exiguobacterium sibiricum 255-15... 35 10.0

>CP000927_1285(CP000927|pid:none) Caulobacter sp. K31, complete
genome.
Length = 221

Score = 53.5 bits (127), Expect = 4e-05
Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 6/130 (4%)
Frame = +1

Query: 1900 PRG----GQGHYGASRGG--RKHMGIDFSSIVGQDIVAPISGKVVNFKGARTKYPMLQLY 2061
PRG G G +GA R G R+H G+D+ + GQD+ APISG V A L+
Sbjct: 87 PRGHDDFGDGQFGARRDGGVREHEGVDYVAAAGQDVAAPISGYVTKIGYAYAGSSDLKFV 146

Query: 2062 PSKKFTEFDYLQMLYVHPPVGINMGASYQVSVGDTIGIAANLQELGYSVEVTPHIHLELK 2241
+ YV P V + V +G TIG +LQ+ + +T H+HLE+
Sbjct: 147 EITNPALGYVARAFYVTPDVEVGQ----TVRLGQTIGRDQSLQK--HYPGITNHVHLEVM 200

Query: 2242 KNVPGKDPIS 2271
+ PG + ++
Sbjct: 201 Q--PGGERVN 208

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 3,950,939,631
Number of extensions: 81098596
Number of successful extensions: 219928
Number of sequences better than 10.0: 115
Number of HSP's gapped: 219688
Number of HSP's successfully gapped: 115
Length of query: 817
Length of database: 1,051,180,864
Length adjustment: 137
Effective length of query: 680
Effective length of database: 607,772,281
Effective search space: 413285151080
Effective search space used: 413285151080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.75 gvh: 0.37 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.02 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
44.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for Contig-U15306-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 49
AF (FL, S) 4
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0