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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15302-1
Contig ID Contig-U15302-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15302-1 (Contig-U15302-1Q) /CSM_Contig/Contig-U15302-1Q.Seq.d
AACACTTTTTCCTTACTTTTGCCGAATTCAAATCAAGTATCATGAAGAAA
AAGTTATATTTAGAACCAATTGTTTTACTCTTATTAAAATGGATGTCAAG
TGTTGAAGATATGGATCTTAAAGATTGGAATTCTTTAGATACAGAACCAT
CAGATGATGACGATAGCAATGTTGCATTTGAAGCTATTGAAGCATTATCA
CATTGTGTCAGTAAAGGTTTATGGGAATTCTTTTTACAATGTGCACCAAC
TTTACTCAACTCTGGTAATTGGAAAGAACGTTATACTGGTTTAATGACCC
TTTCAAGTATTTCAGAAGGTTGTGAAAAACAAATCAAAACAAATTTCAAA
CTTATTATTCAATCAATCCTTCCATTAGCAAATGATTCACATCCACGTGT
TCGTTTCGCATTTTTCTATTGTTTAGGTTCATTTGCATCATACCTTAAAC
GTGAAATGCAAGATTTATACAAAACTTTAATTCCAGTTTCATTAGAACAT
CTCAATGACCCATTCCCAAGAGTTACCATTTCAAATTGTGAATTTTTAAC
ATTATTCCTTGATGAAATTAAACCAAACAGAGTCAAAGAATTCAAAGATC
AATTCTTAGGAAGATTATCACCACTCTTACAAAATGAAAACTACAAAATC
GTTCAACATTCTTTGAATGCTTTCTCATCTGTTGTTGATGGTATTGGTGA
AGAATTTACTCAACATTACTCTGAAATTATGCCATTTTTAATTAAAATCC
TCAGAACTCAAACATCAGTTGAAACTAAAACACTCCGTGGTAGAGCCATT
GAAACCATCTCTTTAGTAGGTCTTGCTGTAGGTAAAAAAGTATTTTTAAA
TGATTGTATTCAAATCATTCAATACGTTTCATCTTTAGAGAAATTCAAAG
ATGACGATCCACAAGTTGATTTCTTTTTAAGAGCATTCACTCGTTTCGCC
CAATGTCTTGGTGAAGATTTCATTCCATACCTTAAATACTCTATGAGTCC
ATTAATGGATGCTATCAATGGTAAAGTTGACAGTTCCGTTGAAAATGGTG
AAGATTTTAGTGATGAAAGTAATAACTCTGGTTCAATTGTTATGGAAAAT
AAAGCAATGGCATTAGAAATGGTATCAATTTATGCAATGGAATTAAAACA
TCATTTATTCCCATATGTCGAACAATTATATAAAGGATCAATTGAATTAG
TTGATTTCCCATTTAGTAGTTTAGTTGCAATTCAAGCAGTTAATCTTATT
CCATTTTTGGTAAAGATTTCAAAACAACACTTTGAAGCCGTTGGTGG
Gap no gap
Contig length 1297
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 84942
End point 86238
Strand (PLUS/MINUS) PLUS
Number of clones 8
Number of EST 8
Link to clone list U15302
List of clone(s) 

est1=AHN172F,1,407
est2=AHN224F,1,684
est3=VHE142F,13,610
est4=AHN339F,55,683
est5=VHI637F,79,698
est6=FC-BQ05F,586,1297
est7=FC-BR22F,586,1136
est8=AHP215Z,1095,1270
Translated Amino Acid sequence 
HFFLTFAEFKSSIMKKKLYLEPIVLLLLKWMSSVEDMDLKDWNSLDTEPSDDDDSNVAFE
AIEALSHCVSKGLWEFFLQCAPTLLNSGNWKERYTGLMTLSSISEGCEKQIKTNFKLIIQ
SILPLANDSHPRVRFAFFYCLGSFASYLKREMQDLYKTLIPVSLEHLNDPFPRVTISNCE
FLTLFLDEIKPNRVKEFKDQFLGRLSPLLQNENYKIVQHSLNAFSSVVDGIGEEFTQHYS
EIMPFLIKILRTQTSVETKTLRGRAIETISLVGLAVGKKVFLNDCIQIIQYVSSLEKFKD
DDPQVDFFLRAFTRFAQCLGEDFIPYLKYSMSPLMDAINGKVDSSVENGEDFSDESNNSG
SIVMENKAMALEMVSIYAMELKHHLFPYVEQLYKGSIELVDFPFSSLVAIQAVNLIPFLV
KISKQHFEAVG
Translated Amino Acid sequence (All Frames) 
Frame A:
ntfslllpnsnqvs*rksyi*nqlfysy*ngcqvlkiwilkigil*iqnhqmmtiamlhl
kllkhyhivsvkvygnsfynvhqlystlvigknvilv**pfqvfqkvvknkskqisnllf
nqsfh*qmihihvfvshfsiv*vhlhhtlnvkckiytkl*fqfh*nismthsqelpfqiv
nf*hyslmklnqtesknskins*edyhhsykmkttksfnil*mlshlllmvlvknllnit
lklchf*lksselkhqlklkhsvveplkpsl**vll*vkkyf*mivfksfntfhl*rnsk
mtihklisf*ehslvspnvlvkisfhtlntl*vh*wmlsmvkltvplkmvkilvmkvitl
vqllwkikqwh*kwyqfmqwn*niiyshmsnnyikdqln*lishlvv*lqfkqlilfhfw
*rfqnntlkplv


Frame B:
tlfpyfcriqikyheekvifrtncftlikmdvkc*rygs*rleffryrtir**r*qcci*
sy*siitlcq*rfmgilftmctnftqlw*lertlywfndpfkyfrrl*ktnqnkfqtyys
inpsisk*ftstcsfrifllfrficiip*t*narfiqnfnssfirtsq*pipksyhfkl*
ifniip**n*tkqsqriqrsilrkiittltk*klqnrstffecflicc*wyw*riystll
*nyaifn*npqnsnis*n*ntpw*sh*nhlfsrsccr*ksifk*lysnhsirfifreiqr
*rsts*flfksihsfrpmsw*rfhsip*ilyesingcyqw*s*qfr*kw*rf***k**lw
fncygk*sngirnginlcngiktsfipicrtii*rin*is*fpi**fscnsss*sysifg
kdfkttl*srww


Frame C:
HFFLTFAEFKSSIMKKKLYLEPIVLLLLKWMSSVEDMDLKDWNSLDTEPSDDDDSNVAFE
AIEALSHCVSKGLWEFFLQCAPTLLNSGNWKERYTGLMTLSSISEGCEKQIKTNFKLIIQ
SILPLANDSHPRVRFAFFYCLGSFASYLKREMQDLYKTLIPVSLEHLNDPFPRVTISNCE
FLTLFLDEIKPNRVKEFKDQFLGRLSPLLQNENYKIVQHSLNAFSSVVDGIGEEFTQHYS
EIMPFLIKILRTQTSVETKTLRGRAIETISLVGLAVGKKVFLNDCIQIIQYVSSLEKFKD
DDPQVDFFLRAFTRFAQCLGEDFIPYLKYSMSPLMDAINGKVDSSVENGEDFSDESNNSG
SIVMENKAMALEMVSIYAMELKHHLFPYVEQLYKGSIELVDFPFSSLVAIQAVNLIPFLV
KISKQHFEAVG
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15302-1 (Contig-U15302-1Q)
/CSM_Contig/Contig-U15302-1Q.Seq.d
         (1297 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15302-1 (Contig-U15302-1Q) /CSM_Contig/Conti...  2571  0.0
Contig-U15408-1 (Contig-U15408-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U15452-1 (Contig-U15452-1Q) /CSM_Contig/Conti...    38  0.033
Contig-U14713-1 (Contig-U14713-1Q) /CSM_Contig/Conti...    38  0.033
Contig-U10900-1 (Contig-U10900-1Q) /CSM_Contig/Conti...    38  0.033
Contig-U01697-1 (Contig-U01697-1Q) /CSM_Contig/Conti...    38  0.033
Contig-U15547-1 (Contig-U15547-1Q) /CSM_Contig/Conti...    36  0.13
Contig-U15309-1 (Contig-U15309-1Q) /CSM_Contig/Conti...    36  0.13
Contig-U13968-1 (Contig-U13968-1Q) /CSM_Contig/Conti...    36  0.13
Contig-U12373-1 (Contig-U12373-1Q) /CSM_Contig/Conti...    36  0.13

>Contig-U15302-1 (Contig-U15302-1Q) /CSM_Contig/Contig-U15302-1Q.Seq.d
          Length = 1297

 Score = 2571 bits (1297), Expect = 0.0
 Identities = 1297/1297 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    aacactttttccttacttttgccgaattcaaatcaagtatcatgaagaaaaagttatatt 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    aacactttttccttacttttgccgaattcaaatcaagtatcatgaagaaaaagttatatt 60

                                                                        
Query: 61   tagaaccaattgttttactcttattaaaatggatgtcaagtgttgaagatatggatctta 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   tagaaccaattgttttactcttattaaaatggatgtcaagtgttgaagatatggatctta 120

                                                                        
Query: 121  aagattggaattctttagatacagaaccatcagatgatgacgatagcaatgttgcatttg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  aagattggaattctttagatacagaaccatcagatgatgacgatagcaatgttgcatttg 180

                                                                        
Query: 181  aagctattgaagcattatcacattgtgtcagtaaaggtttatgggaattctttttacaat 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  aagctattgaagcattatcacattgtgtcagtaaaggtttatgggaattctttttacaat 240

                                                                        
Query: 241  gtgcaccaactttactcaactctggtaattggaaagaacgttatactggtttaatgaccc 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  gtgcaccaactttactcaactctggtaattggaaagaacgttatactggtttaatgaccc 300

                                                                        
Query: 301  tttcaagtatttcagaaggttgtgaaaaacaaatcaaaacaaatttcaaacttattattc 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  tttcaagtatttcagaaggttgtgaaaaacaaatcaaaacaaatttcaaacttattattc 360

                                                                        
Query: 361  aatcaatccttccattagcaaatgattcacatccacgtgttcgtttcgcatttttctatt 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  aatcaatccttccattagcaaatgattcacatccacgtgttcgtttcgcatttttctatt 420

                                                                        
Query: 421  gtttaggttcatttgcatcataccttaaacgtgaaatgcaagatttatacaaaactttaa 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  gtttaggttcatttgcatcataccttaaacgtgaaatgcaagatttatacaaaactttaa 480

                                                                        
Query: 481  ttccagtttcattagaacatctcaatgacccattcccaagagttaccatttcaaattgtg 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  ttccagtttcattagaacatctcaatgacccattcccaagagttaccatttcaaattgtg 540

                                                                        
Query: 541  aatttttaacattattccttgatgaaattaaaccaaacagagtcaaagaattcaaagatc 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  aatttttaacattattccttgatgaaattaaaccaaacagagtcaaagaattcaaagatc 600

                                                                        
Query: 601  aattcttaggaagattatcaccactcttacaaaatgaaaactacaaaatcgttcaacatt 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  aattcttaggaagattatcaccactcttacaaaatgaaaactacaaaatcgttcaacatt 660

                                                                        
Query: 661  ctttgaatgctttctcatctgttgttgatggtattggtgaagaatttactcaacattact 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  ctttgaatgctttctcatctgttgttgatggtattggtgaagaatttactcaacattact 720

                                                                        
Query: 721  ctgaaattatgccatttttaattaaaatcctcagaactcaaacatcagttgaaactaaaa 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  ctgaaattatgccatttttaattaaaatcctcagaactcaaacatcagttgaaactaaaa 780

                                                                        
Query: 781  cactccgtggtagagccattgaaaccatctctttagtaggtcttgctgtaggtaaaaaag 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  cactccgtggtagagccattgaaaccatctctttagtaggtcttgctgtaggtaaaaaag 840

                                                                        
Query: 841  tatttttaaatgattgtattcaaatcattcaatacgtttcatctttagagaaattcaaag 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  tatttttaaatgattgtattcaaatcattcaatacgtttcatctttagagaaattcaaag 900

                                                                        
Query: 901  atgacgatccacaagttgatttctttttaagagcattcactcgtttcgcccaatgtcttg 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  atgacgatccacaagttgatttctttttaagagcattcactcgtttcgcccaatgtcttg 960

                                                                        
Query: 961  gtgaagatttcattccataccttaaatactctatgagtccattaatggatgctatcaatg 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  gtgaagatttcattccataccttaaatactctatgagtccattaatggatgctatcaatg 1020

                                                                        
Query: 1021 gtaaagttgacagttccgttgaaaatggtgaagattttagtgatgaaagtaataactctg 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 gtaaagttgacagttccgttgaaaatggtgaagattttagtgatgaaagtaataactctg 1080

                                                                        
Query: 1081 gttcaattgttatggaaaataaagcaatggcattagaaatggtatcaatttatgcaatgg 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 gttcaattgttatggaaaataaagcaatggcattagaaatggtatcaatttatgcaatgg 1140

                                                                        
Query: 1141 aattaaaacatcatttattcccatatgtcgaacaattatataaaggatcaattgaattag 1200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 aattaaaacatcatttattcccatatgtcgaacaattatataaaggatcaattgaattag 1200

                                                                        
Query: 1201 ttgatttcccatttagtagtttagttgcaattcaagcagttaatcttattccatttttgg 1260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 ttgatttcccatttagtagtttagttgcaattcaagcagttaatcttattccatttttgg 1260

                                                 
Query: 1261 taaagatttcaaaacaacactttgaagccgttggtgg 1297
            |||||||||||||||||||||||||||||||||||||
Sbjct: 1261 taaagatttcaaaacaacactttgaagccgttggtgg 1297


>Contig-U15408-1 (Contig-U15408-1Q) /CSM_Contig/Contig-U15408-1Q.Seq.d
          Length = 1505

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 679 ctgttgttgatggtattggtg 699
           |||||||||||||||||||||
Sbjct: 757 ctgttgttgatggtattggtg 737


 Score = 30.2 bits (15), Expect = 8.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                           
Query: 42   atgaagaaaaagtta 56
            |||||||||||||||
Sbjct: 1411 atgaagaaaaagtta 1425


>Contig-U15452-1 (Contig-U15452-1Q) /CSM_Contig/Contig-U15452-1Q.Seq.d
          Length = 1068

 Score = 38.2 bits (19), Expect = 0.033
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 325 aaaaacaaatcaaaacaaa 343
           |||||||||||||||||||
Sbjct: 723 aaaaacaaatcaaaacaaa 741


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,404
Number of Sequences: 8402
Number of extensions: 24404
Number of successful extensions: 2688
Number of sequences better than 10.0: 264
length of query: 1297
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1281
effective length of database: 7,941,110
effective search space: 10172561910
effective search space used: 10172561910
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.18
Homology vs DNA 
Query= Contig-U15302-1 (Contig-U15302-1Q) /CSM_Contig/Contig-U15302-1Q.Seq.d
         (1297 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU284926) Dictyostelium discoideum gamete cDNA clone:FC-BQ0...  1411   0.0    1
(BJ337374) Dictyostelium discoideum cDNA clone:dda57o06, 5' ...  1354   0.0    1
(BJ337436) Dictyostelium discoideum cDNA clone:dda57n09, 5' ...  1247   0.0    1
(BJ423189) Dictyostelium discoideum cDNA clone:ddv48i10, 5' ...  1229   0.0    1
(BJ420427) Dictyostelium discoideum cDNA clone:ddv39c11, 5' ...  1185   0.0    1
(AU284972) Dictyostelium discoideum gamete cDNA clone:FC-BR2...  1092   0.0    1
(BJ337506) Dictyostelium discoideum cDNA clone:dda57o17, 5' ...   771   0.0    1
(BJ356699) Dictyostelium discoideum cDNA clone:dda61m04, 3' ...   220   2e-64  2
(BJ326170) Dictyostelium discoideum cDNA clone:dda15f13, 5' ...    38   0.014  3
(BX248401) Zebrafish DNA sequence from clone CH211-233P10.         50   0.22   1
(DE363070) Bombyx mori genomic DNA, BAC clone:BET_606_K07.         50   0.22   1
(DE363049) Bombyx mori genomic DNA, BAC clone:BET_606_J07.         50   0.22   1
(DE323503) Bombyx mori genomic DNA, BAC clone:BES_633_N18.         50   0.22   1
(DE314327) Bombyx mori genomic DNA, BAC clone:BES_603_A05.         50   0.22   1
(DE156222) Bombyx mori genomic DNA, Fosmid clone:RO0299-D19_F.     50   0.22   1
(DL083629) Listeria innocua, genome and applications.              36   0.41   2
(DL081580) Listeria innocua, genome and applications.              36   0.44   2
(AX417048) Sequence 4039 from Patent WO0228891.                    36   0.46   2
(AX417047) Sequence 4038 from Patent WO0228891.                    36   0.46   2
(AL596172) Listeria innocua Clip11262 complete genome, segme...    36   0.47   2
(AC013262) Homo sapiens BAC clone RP11-89C12 from 2, complet...    38   0.49   2
(AX417037) Sequence 4028 from Patent WO0228891.                    36   0.50   2
(AC113149) Homo sapiens chromosome 11 clone RP11-555O6 map 1...    38   0.50   2
(DL084053) Listeria innocua, genome and applications.              36   0.58   2
(DL082259) Listeria innocua, genome and applications.              36   0.58   2
(AX415491) Sequence 2482 from Patent WO0228891.                    36   0.58   2
(AX413697) Sequence 688 from Patent WO0228891.                     36   0.58   2
(BX546500) Zebrafish DNA sequence from clone DKEY-15L19 in l...    48   0.87   1
(AC129332) Mus musculus BAC clone RP23-91I19 from chromosome...    48   0.87   1
(AC013244) Homo sapiens 12 BAC RP11-60E8 (Roswell Park Cance...    48   0.87   1
(AC161706) Otolemur garnettii clone CH256-462A19, WORKING DR...    48   0.87   1
(AC158246) Otolemur garnettii clone CH256-51D5, WORKING DRAF...    48   0.87   1
(AC172499) Bos taurus clone CH240-488F12, WORKING DRAFT SEQU...    48   0.87   1
(AC009727) Homo sapiens chromosome 12 clone RP11-533J15, WOR...    48   0.87   1
(ET398194) S0120E06_T7 CHORI-214 Salmo salar genomic clone S...    48   0.87   1
(ET367419) S0242C09_SP6 CHORI-214 Salmo salar genomic clone ...    48   0.87   1
(EG927297) EST_ssal_evf_29724 ssalevf mixed_tissue Salmo sal...    48   0.87   1
(EG767186) EST_ssal_evd_43251 ssalevd thymus Salmo salar cDN...    48   0.87   1
(EG765958) EST_ssal_sjb_3684 ssalsjb mixed_tissue Salmo sala...    48   0.87   1
(EG760284) EST_ssal_sjb_8662 ssalsjb mixed_tissue Salmo sala...    48   0.87   1
(EG760283) EST_ssal_sjb_8661 ssalsjb mixed_tissue Salmo sala...    48   0.87   1
(EG648592) SGP259089 Atlantic salmon normalized Muscle cDNA ...    48   0.87   1
(DY738341) EST_ssal_rgb2_94080 ssalrgb2 mixed_tissue Salmo s...    48   0.87   1
(DY708010) EST_ssal_rgb2_63749 ssalrgb2 mixed_tissue Salmo s...    48   0.87   1
(DW592133) smus1-014AH08.g1_#0014.0 DIAS_SMUS Salmo salar cD...    48   0.87   1
(DW578160) EST_ssal_rgb2_42579 rgb2 Salmo salar cDNA clone s...    48   0.87   1
(DW574118) EST_ssal_rgb2_38537 rgb2 Salmo salar cDNA clone s...    48   0.87   1
(DW564072) EST_ssal_rgb2_28491 rgb2 Salmo salar cDNA clone s...    48   0.87   1
(DW563241) EST_ssal_rgb2_27660 rgb2 Salmo salar cDNA clone s...    48   0.87   1
(DW535464) EST_ssal_plnb_4100 plnb Salmo salar cDNA clone ss...    48   0.87   1
(DW534059) EST_ssal_plnb_2695 plnb Salmo salar cDNA clone ss...    48   0.87   1
(DN731649) CNB59-G02.y1d-s SHGC-CNB Gasterosteus aculeatus c...    48   0.87   1
(CB514414) ssalrgb552123 mixed_tissue Salmo salar cDNA, mRNA...    48   0.87   1
(CR548612) Paramecium tetraurelia macronuclear largest chrom...    40   1.0    18
(DQ149675) Compsomelissa borneri cytochrome oxidase subunit ...    36   1.4    3
(AC087557) Mus musculus strain C57BL/6J chromosome 9 clone r...    38   1.4    5
(BZ471346) BONLJ46TR BO_1.6_2_KB_tot Brassica oleracea genom...    34   2.1    3
(CT040726) Sus scrofa genomic clone CH242-2J7, genomic surve...    36   2.6    3
(AY513425) Guayaquila emarginata isolate ACOPAN1 cytochrome ...    36   2.6    3
(CU182773) M.truncatula DNA sequence from clone MTH2-95D13 o...    34   3.1    8
(BX088718) Zebrafish DNA sequence from clone DKEY-185E18.          46   3.4    1
(AC024706) Homo sapiens BAC clone RP11-119J20 from 4, comple...    46   3.4    1
(CT030670) Platynereis dumerilii bac CH305_41G22, WORKING DR...    46   3.4    1
(AC222394) Bos taurus clone CH240-417D2, WORKING DRAFT SEQUE...    46   3.4    1
(AC209798) Zea mays chromosome 4 clone CH201-240O3; ZMMBBc02...    46   3.4    1
(AC205535) Zea mays chromosome 4 clone CH201-103M5; ZMMBBc01...    46   3.4    1
(EJ402396) 1093012063843 Global-Ocean-Sampling_GS-28-01-01-1...    46   3.4    1
(DH450217) Macropus eugenii DNA with T7 primer, fosmid clone...    46   3.4    1
(CZ804833) OC__Ba0177I18.r OC__Ba Oryza coarctata genomic cl...    46   3.4    1
(CZ802885) OC__Ba0174P08.r OC__Ba Oryza coarctata genomic cl...    46   3.4    1
(CG402414) ZMMBBb0246C19.r ZMMBBb Zea mays subsp. mays genom...    46   3.4    1
(AG473039) Mus musculus molossinus DNA, clone:MSMg01-364P12....    46   3.4    1
(AM712349) Uncultured bacterium partial 16S rRNA gene, clone...    46   3.4    1
(CP000485) Bacillus thuringiensis str. Al Hakam, complete ge...    46   3.4    1
(CP000001) Bacillus cereus E33L, complete genome.                  46   3.4    1
(AE017355) Bacillus thuringiensis serovar konkukian str. 97-...    46   3.4    1
(AE017334) Bacillus anthracis str. 'Ames Ancestor', complete...    46   3.4    1
(AE017225) Bacillus anthracis str. Sterne, complete genome.        46   3.4    1
(AE016879) Bacillus anthracis str. Ames, complete genome.          46   3.4    1
(AY181107) Bombus hyperboreus strain Norway cytochrome oxida...    36   3.5    3
(BZ945981) CH240_124A12.TJ CHORI-240 Bos taurus genomic clon...    34   3.9    3
(CT010513) Mouse DNA sequence *** SEQUENCING CANCELLED *** f...    32   4.0    9
(EJ134346) 1092343586898 Global-Ocean-Sampling_GS-27-01-01-1...    40   4.1    2
(AC023423) Homo sapiens BAC clone RP11-430C23 from Y, comple...    40   4.2    3
(AC112185) Homo sapiens chromosome 5 clone RP11-231B7, WORKI...    34   4.2    7
(AC055124) Homo sapiens chromosome 13 clone RP11-744B5, WORK...    40   4.7    8
(AC022203) Homo sapiens BAC clone RP11-490K15 from 13, compl...    34   4.9    10
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome.       34   5.2    10
(AC232178) Lama pacos clone CH246-380H24, WORKING DRAFT SEQU...    36   6.1    7
(AC163910) Bos taurus clone CH240-138C13, *** SEQUENCING IN ...    32   6.2    2
(AC164024) Bos taurus clone CH240-142C23, *** SEQUENCING IN ...    34   6.3    2
(AC151243) Bos taurus clone CH240-293J5, WORKING DRAFT SEQUE...    34   6.3    2
(AC230164) Bos taurus clone CH240-519H12, WORKING DRAFT SEQU...    32   6.4    2
(AC155331) Mus musculus 6 BAC RP24-189G6 (Roswell Park Cance...    32   6.4    2
(ED648040) GM_WBa0064H06.f GM_WBa Glycine max genomic clone ...    34   6.9    3
(DV147376) CV03072B1B11.f1 CV03-normalized library Euphorbia...    34   7.2    3
(DV147632) CV03073A2E01.f1 CV03-normalized library Euphorbia...    34   7.3    3
(AC174306) Medicago truncatula clone mth2-116f22, complete s...    32   8.0    8
(ER441906) 1092963816324 Global-Ocean-Sampling_GS-35-01-01-1...    34   8.5    2
(ER440390) 1092963812292 Global-Ocean-Sampling_GS-35-01-01-1...    34   8.6    2

>(AU284926) Dictyostelium discoideum gamete cDNA clone:FC-BQ05, 5' end
            single read.
          Length = 712

 Score = 1411 bits (712), Expect = 0.0
 Identities = 712/712 (100%)
 Strand = Plus / Plus


Query: 586  aagaattcaaagatcaattcttaggaagattatcaccactcttacaaaatgaaaactaca 645
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    aagaattcaaagatcaattcttaggaagattatcaccactcttacaaaatgaaaactaca 60


Query: 646  aaatcgttcaacattctttgaatgctttctcatctgttgttgatggtattggtgaagaat 705
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   aaatcgttcaacattctttgaatgctttctcatctgttgttgatggtattggtgaagaat 120


Query: 706  ttactcaacattactctgaaattatgccatttttaattaaaatcctcagaactcaaacat 765
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  ttactcaacattactctgaaattatgccatttttaattaaaatcctcagaactcaaacat 180


Query: 766  cagttgaaactaaaacactccgtggtagagccattgaaaccatctctttagtaggtcttg 825
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  cagttgaaactaaaacactccgtggtagagccattgaaaccatctctttagtaggtcttg 240


Query: 826  ctgtaggtaaaaaagtatttttaaatgattgtattcaaatcattcaatacgtttcatctt 885
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  ctgtaggtaaaaaagtatttttaaatgattgtattcaaatcattcaatacgtttcatctt 300


Query: 886  tagagaaattcaaagatgacgatccacaagttgatttctttttaagagcattcactcgtt 945
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  tagagaaattcaaagatgacgatccacaagttgatttctttttaagagcattcactcgtt 360


Query: 946  tcgcccaatgtcttggtgaagatttcattccataccttaaatactctatgagtccattaa 1005
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  tcgcccaatgtcttggtgaagatttcattccataccttaaatactctatgagtccattaa 420


Query: 1006 tggatgctatcaatggtaaagttgacagttccgttgaaaatggtgaagattttagtgatg 1065
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  tggatgctatcaatggtaaagttgacagttccgttgaaaatggtgaagattttagtgatg 480


Query: 1066 aaagtaataactctggttcaattgttatggaaaataaagcaatggcattagaaatggtat 1125
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  aaagtaataactctggttcaattgttatggaaaataaagcaatggcattagaaatggtat 540


Query: 1126 caatttatgcaatggaattaaaacatcatttattcccatatgtcgaacaattatataaag 1185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  caatttatgcaatggaattaaaacatcatttattcccatatgtcgaacaattatataaag 600


Query: 1186 gatcaattgaattagttgatttcccatttagtagtttagttgcaattcaagcagttaatc 1245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  gatcaattgaattagttgatttcccatttagtagtttagttgcaattcaagcagttaatc 660


Query: 1246 ttattccatttttggtaaagatttcaaaacaacactttgaagccgttggtgg 1297
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  ttattccatttttggtaaagatttcaaaacaacactttgaagccgttggtgg 712

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,701,353,644
Number of extensions: 101011553
Number of successful extensions: 8684226
Number of sequences better than 10.0: 100
Length of query: 1297
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1273
Effective length of database: 100,704,341,533
Effective search space: 128196626771509
Effective search space used: 128196626771509
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.15
Homology vs Protein 
Query= Contig-U15302-1 (Contig-U15302-1Q) /CSM_Contig/Contig-U15302-1Q.Seq.d
         (1297 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54EW3) RecName: Full=Probable importin-5 homolog; AltName: Ful...   859   0.0
CP000597_103(CP000597|pid:none) Ostreococcus lucimarinus CCE9901...   200   8e-50
AK100005_1(AK100005|pid:none) Oryza sativa Japonica Group cDNA c...   199   2e-49
AY035044_1(AY035044|pid:none) Arabidopsis thaliana unknown prote...   194   4e-48
DQ984942_3(DQ984942|pid:none) Medicago truncatula Ser/Thr protei...   193   1e-47
AC171267_15(AC171267|pid:none) Medicago truncatula clone mth2-17...   192   3e-47
AM920428_165(AM920428|pid:none) Penicillium chrysogenum Wisconsi...   190   1e-46
CP001324_701(CP001324|pid:none) Micromonas sp. RCC299 chromosome...   186   2e-45
BX088700_81(BX088700|pid:none) DNA centromeric region sequence f...   183   1e-44
(O60518) RecName: Full=Ran-binding protein 6;          Short=Ran...   177   6e-43
BC169750_1(BC169750|pid:none) Xenopus laevis karyopherin-beta 3 ...   176   2e-42
CR382135_476(CR382135|pid:none) Debaryomyces hansenii strain CBS...   176   2e-42
AE014297_123(AE014297|pid:none) Drosophila melanogaster chromoso...   176   2e-42
BC121845_1(BC121845|pid:none) Xenopus tropicalis importin 5, mRN...   175   4e-42
FM992688_747(FM992688|pid:none) Candida dubliniensis CD36 chromo...   172   2e-41
BC046946_1(BC046946|pid:none) Xenopus laevis karyopherin beta 3 ...   172   2e-41
BC110969_1(BC110969|pid:none) Xenopus laevis karyopherin beta 3 ...   172   2e-41
AJ557445_1(AJ557445|pid:none) Xenopus laevis mRNA for karyopheri...   172   2e-41
(Q8BKC5) RecName: Full=Importin-5;          Short=Imp5; AltName:...   171   7e-41
AF294327_1(AF294327|pid:none) Mus musculus Ran binding protein 5...   170   9e-41
AK302812_1(AK302812|pid:none) Homo sapiens cDNA FLJ54099 complet...   170   1e-40
CR859567_1(CR859567|pid:none) Pongo abelii mRNA; cDNA DKFZp459E1...   170   1e-40
(O00410) RecName: Full=Importin-5;          Short=Imp5; AltName:...   170   1e-40
U72761_1(U72761|pid:none) Human karyopherin beta 3 mRNA, complet...   169   2e-40
BC045640_1(BC045640|pid:none) Homo sapiens importin 5, mRNA (cDN...   167   6e-40
BC051433_1(BC051433|pid:none) Mus musculus importin 5, mRNA (cDN...   167   6e-40
AC170580_5(AC170580|pid:none) Medicago truncatula chromosome 7 c...   161   5e-38
AE017345_339(AE017345|pid:none) Cryptococcus neoformans var. neo...   157   6e-37
CR382132_607(CR382132|pid:none) Yarrowia lipolytica strain CLIB1...   157   8e-37
CU928175_49(CU928175|pid:none) Zygosaccharomyces rouxii strain C...   152   3e-35
AE016820_22(AE016820|pid:none) Ashbya gossypii (= Eremothecium g...   151   6e-35
AC093017_15(AC093017|pid:none) Oryza sativa (japonica cultivar-g...   150   1e-34
AP008209_2355(AP008209|pid:none) Oryza sativa (japonica cultivar...   148   5e-34
AK125031_1(AK125031|pid:none) Homo sapiens cDNA FLJ43041 fis, cl...   147   8e-34
AK300408_1(AK300408|pid:none) Homo sapiens cDNA FLJ54311 complet...   133   1e-29
AM910992_83(AM910992|pid:none) Plasmodium knowlesi strain H chro...   131   5e-29
AF539437_1(AF539437|pid:none) Plasmodium falciparum isolate 3D7 ...   127   1e-27
CR940347_895(CR940347|pid:none) Theileria annulata strain Ankara...   114   6e-24
AL162384_2(AL162384|pid:none) Human DNA sequence from clone RP11...   112   4e-23
CR926216_1(CR926216|pid:none) Xenopus tropicalis finished cDNA, ...   111   7e-23
AM437344_1(AM437344|pid:none) Vitis vinifera contig VV78X175554....    97   1e-18
AF256227_1(AF256227|pid:none) Plasmodium falciparum karyopherin ...    94   1e-17
(P40069) RecName: Full=Importin subunit beta-4; AltName: Full=Ka...    91   7e-17
AC135206_1(AC135206|pid:none) Oryza sativa (japonica cultivar-gr...    88   8e-16
AK230070_1(AK230070|pid:none) Arabidopsis thaliana mRNA for hypo...    87   1e-15
AM494969_236(AM494969|pid:none) Leishmania braziliensis chromoso...    85   5e-15
CT005269_226(CT005269|pid:none) Leishmania major strain Friedlin...    84   1e-14
AM502250_266(AM502250|pid:none) Leishmania infantum chromosome 32.     84   1e-14
AB170846_1(AB170846|pid:none) Macaca fascicularis brain cDNA clo...    79   3e-13
CR380953_142(CR380953|pid:none) Candida glabrata strain CBS138 c...    79   3e-13
AL035602_13(AL035602|pid:none) Arabidopsis thaliana DNA chromoso...    77   1e-12
CP000593_267(CP000593|pid:none) Ostreococcus lucimarinus CCE9901...    64   9e-09
AE014296_2931(AE014296|pid:none) Drosophila melanogaster chromos...    63   2e-08
BT044140_1(BT044140|pid:none) Drosophila melanogaster FI03275 fu...    63   2e-08
T23948(T23948) hypothetical protein R06A4.4a - Caenorhabditis el...    61   1e-07
CT005246_76(CT005246|pid:none) Leishmania major strain Friedlin,...    60   2e-07
AC005167_13(AC005167|pid:none) Arabidopsis thaliana chromosome 2...    58   7e-07
AB028002_1(AB028002|pid:none) Schizosaccharomyces pombe gene for...    56   2e-06
BT062810_1(BT062810|pid:none) Zea mays full-length cDNA clone ZM...    56   3e-06
DQ335585_1(DQ335585|pid:none) Emericella nidulans KapC (kapC) ge...    53   3e-05
AL606656_5(AL606656|pid:none) Oryza sativa genomic DNA, chromoso...    53   3e-05
AP008210_2372(AP008210|pid:none) Oryza sativa (japonica cultivar...    53   3e-05
AM269991_41(AM269991|pid:none) Aspergillus niger contig An01c045...    50   2e-04
AK155760_1(AK155760|pid:none) Mus musculus B6-derived CD11 +ve d...    50   2e-04
CR382130_271(CR382130|pid:none) Yarrowia lipolytica strain CLIB1...    50   2e-04
AM920431_1458(AM920431|pid:none) Penicillium chrysogenum Wiscons...    49   4e-04
(O14089) RecName: Full=Importin subunit beta-2; AltName: Full=Ka...    49   4e-04
CR382122_234(CR382122|pid:none) Kluyveromyces lactis strain NRRL...    49   5e-04
AE017345_111(AE017345|pid:none) Cryptococcus neoformans var. neo...    48   7e-04
CU928169_265(CU928169|pid:none) Kluyveromyces thermotolerans str...    48   7e-04
CP001331_232(CP001331|pid:none) Micromonas sp. RCC299 chromosome...    48   9e-04
(Q10105) RecName: Full=Translational activator gcn1;  &CU329670_...    47   0.002
AM425954_1(AM425954|pid:none) Vitis vinifera contig VV78X232329....    46   0.003
AM910993_216(AM910993|pid:none) Plasmodium knowlesi strain H chr...    46   0.003
FN318261_1(FN318261|pid:none) Schistosoma japonicum isolate Anhu...    45   0.006
FM992688_205(FM992688|pid:none) Candida dubliniensis CD36 chromo...    45   0.007
CR954214_206(CR954214|pid:none) Ostreococcus tauri strain OTTH05...    44   0.010
(P33892) RecName: Full=Translational activator GCN1;  &A48126(A4...    44   0.013
AE014296_1166(AE014296|pid:none) Drosophila melanogaster chromos...    43   0.022
AY303543_1(AY303543|pid:none) Emericella nidulans putative karyo...    43   0.022
CU928173_528(CU928173|pid:none) Zygosaccharomyces rouxii strain ...    42   0.037
AM502254_108(AM502254|pid:none) Leishmania infantum chromosome 36.     42   0.037
AY118705_1(AY118705|pid:none) Drosophila melanogaster AT21921 fu...    42   0.037
AE016820_73(AE016820|pid:none) Ashbya gossypii (= Eremothecium g...    42   0.063
CU928171_741(CU928171|pid:none) Kluyveromyces thermotolerans str...    41   0.083
FN357337_21(FN357337|pid:none) Schistosoma mansoni genome sequen...    41   0.11
FN392322_265(FN392322|pid:none) Pichia pastoris GS115 chromosome...    41   0.11
DQ407855_1(DQ407855|pid:none) Ictalurus punctatus clone SEEH09R ...    40   0.14
AF059613_1(AF059613|pid:none) Drosophila melanogaster transporti...    40   0.14
CU928179_807(CU928179|pid:none) Zygosaccharomyces rouxii strain ...    40   0.18
AY094781_1(AY094781|pid:none) Drosophila melanogaster LD12333 fu...    40   0.18
(Q86C65) RecName: Full=Target of rapamycin;          EC=2.7.1.-;...    40   0.18
FM992689_981(FM992689|pid:none) Candida dubliniensis CD36 chromo...    40   0.18
AE014296_1163(AE014296|pid:none) Drosophila melanogaster chromos...    40   0.18
BT003191_1(BT003191|pid:none) Drosophila melanogaster RE59670 fu...    40   0.18
AM494972_289(AM494972|pid:none) Leishmania braziliensis chromoso...    40   0.24
AY091025_1(AY091025|pid:none) Arabidopsis thaliana unknown prote...    40   0.24
AC006081_1(AC006081|pid:none) Arabidopsis thaliana chromosome 2 ...    40   0.24
(Q9NBD7) RecName: Full=CLIP-associating protein; AltName: Full=P...    39   0.31
CP000500_677(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...    39   0.54
X64738_1(X64738|pid:none) S.cerevisiae SEC6 gene.                      39   0.54
CR380953_40(CR380953|pid:none) Candida glabrata strain CBS138 ch...    38   0.70
BX950229_1214(BX950229|pid:none) Methanococcus maripaludis strai...    38   0.70
AM425413_1(AM425413|pid:none) Vitis vinifera contig VV78X215139....    38   0.91
FJ715471_1(FJ715471|pid:none) Sus scrofa mucin 12 mRNA, partial ...    38   0.91
BX324146_5(BX324146|pid:none) Zebrafish DNA sequence from clone ...    37   1.2
BX324146_3(BX324146|pid:none) Zebrafish DNA sequence from clone ...    37   1.2
AM502252_51(AM502252|pid:none) Leishmania infantum chromosome 34.      37   1.2
CP001229_1271(CP001229|pid:none) Sulfurihydrogenibium azorense A...    37   1.6
FN357382_14(FN357382|pid:none) Schistosoma mansoni genome sequen...    37   1.6
CP000867_1445(CP000867|pid:none) Methanococcus maripaludis C6, c...    37   1.6
CR382138_212(CR382138|pid:none) Debaryomyces hansenii strain CBS...    37   2.0
FN392320_440(FN392320|pid:none) Pichia pastoris GS115 chromosome...    36   2.7
AE016816_19(AE016816|pid:none) Ashbya gossypii (= Eremothecium g...    36   3.5
CP000153_2087(CP000153|pid:none) Sulfurimonas denitrificans DSM ...    36   3.5
(Q1ZXQ8) RecName: Full=Centrosomal protein 224;          Short=C...    35   4.5
AJ012088_1(AJ012088|pid:none) Dictyostelium discoideum mRNA for ...    35   4.5
CP000393_1567(CP000393|pid:none) Trichodesmium erythraeum IMS101...    35   4.5
AP007151_972(AP007151|pid:none) Aspergillus oryzae RIB40 genomic...    35   5.9
BX001017_1(BX001017|pid:none) Zebrafish DNA sequence from clone ...    35   5.9
(Q8VI75) RecName: Full=Importin-4;          Short=Imp4; AltName:...    35   7.7
AK297322_1(AK297322|pid:none) Homo sapiens cDNA FLJ60078 partial...    35   7.7
BX640725_1(BX640725|pid:none) Homo sapiens mRNA; cDNA DKFZp686D1...    35   7.7
AP009247_271(AP009247|pid:none) Candidatus Vesicomyosocius okuta...    35   7.7
(P38217) RecName: Full=Importin subunit beta-2; AltName: Full=Ka...    35   7.7
(Q23924) RecName: Full=Coatomer subunit beta; AltName: Full=Beta...    35   7.7
(Q99JD4) RecName: Full=CLIP-associating protein 2; AltName: Full...    35   7.7
CR382130_499(CR382130|pid:none) Yarrowia lipolytica strain CLIB1...    35   7.7
BC117964_1(BC117964|pid:none) Mus musculus CLIP associating prot...    35   7.7

>(Q54EW3) RecName: Full=Probable importin-5 homolog; AltName:
            Full=Importin subunit beta-3; AltName: Full=Karyopherin
            beta-3;
          Length = 1067

 Score =  859 bits (2219), Expect = 0.0
 Identities = 431/431 (100%), Positives = 431/431 (100%)
 Frame = +3

Query: 3    HFFLTFAEFKSSIMKKKLYLEPIVLLLLKWMSSVEDMDLKDWNSLDTEPSDDDDSNVAFE 182
            HFFLTFAEFKSSIMKKKLYLEPIVLLLLKWMSSVEDMDLKDWNSLDTEPSDDDDSNVAFE
Sbjct: 278  HFFLTFAEFKSSIMKKKLYLEPIVLLLLKWMSSVEDMDLKDWNSLDTEPSDDDDSNVAFE 337

Query: 183  AIEALSHCVSKGLWEFFLQCAPTLLNSGNWKERYTGLMTLSSISEGCEKQIKTNFKLIIQ 362
            AIEALSHCVSKGLWEFFLQCAPTLLNSGNWKERYTGLMTLSSISEGCEKQIKTNFKLIIQ
Sbjct: 338  AIEALSHCVSKGLWEFFLQCAPTLLNSGNWKERYTGLMTLSSISEGCEKQIKTNFKLIIQ 397

Query: 363  SILPLANDSHPRVRFAFFYCLGSFASYLKREMQDLYKTLIPVSLEHLNDPFPRVTISNCE 542
            SILPLANDSHPRVRFAFFYCLGSFASYLKREMQDLYKTLIPVSLEHLNDPFPRVTISNCE
Sbjct: 398  SILPLANDSHPRVRFAFFYCLGSFASYLKREMQDLYKTLIPVSLEHLNDPFPRVTISNCE 457

Query: 543  FLTLFLDEIKPNRVKEFKDQFLGRLSPLLQNENYKIVQHSLNAFSSVVDGIGEEFTQHYS 722
            FLTLFLDEIKPNRVKEFKDQFLGRLSPLLQNENYKIVQHSLNAFSSVVDGIGEEFTQHYS
Sbjct: 458  FLTLFLDEIKPNRVKEFKDQFLGRLSPLLQNENYKIVQHSLNAFSSVVDGIGEEFTQHYS 517

Query: 723  EIMPFLIKILRTQTSVETKTLRGRAIETISLVGLAVGKKVFLNDCIQIIQYVSSLEKFKD 902
            EIMPFLIKILRTQTSVETKTLRGRAIETISLVGLAVGKKVFLNDCIQIIQYVSSLEKFKD
Sbjct: 518  EIMPFLIKILRTQTSVETKTLRGRAIETISLVGLAVGKKVFLNDCIQIIQYVSSLEKFKD 577

Query: 903  DDPQVDFFLRAFTRFAQCLGEDFIPYLKYSMSPLMDAINGKVDSSVENGEDFSDESNNSG 1082
            DDPQVDFFLRAFTRFAQCLGEDFIPYLKYSMSPLMDAINGKVDSSVENGEDFSDESNNSG
Sbjct: 578  DDPQVDFFLRAFTRFAQCLGEDFIPYLKYSMSPLMDAINGKVDSSVENGEDFSDESNNSG 637

Query: 1083 SIVMENKAMALEMVSIYAMELKHHLFPYVEQLYKGSIELVDFPFSSLVAIQAVNLIPFLV 1262
            SIVMENKAMALEMVSIYAMELKHHLFPYVEQLYKGSIELVDFPFSSLVAIQAVNLIPFLV
Sbjct: 638  SIVMENKAMALEMVSIYAMELKHHLFPYVEQLYKGSIELVDFPFSSLVAIQAVNLIPFLV 697

Query: 1263 KISKQHFEAVG 1295
            KISKQHFEAVG
Sbjct: 698  KISKQHFEAVG 708

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,998,638,947
Number of extensions: 38435893
Number of successful extensions: 93478
Number of sequences better than 10.0: 129
Number of HSP's gapped: 93219
Number of HSP's successfully gapped: 142
Length of query: 432
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 301
Effective length of database: 627,191,635
Effective search space: 188784682135
Effective search space used: 188784682135
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.59  gvh: 0.52  alm: 0.31  top: 0.77  tms: 0.07  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.05  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for Contig-U15302-1 is cyt
VS (DIR, S) 0
VH (FL, L) 2
VF (FL, S) 0
AH (FL, L) 4
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 2
FC-IC (SUB) 0