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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U00712-1
Contig ID Contig-U00712-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U00712-1 (Contig-U00712-1Q) /CSM_Contig/Contig-U00712-1Q.Seq.d
TAAAATGGAAGAGAAAAATAACGATGTGAATAATAATAATAATAATAATA
ATAATAGTAATATTGTAAAAGATAATACAAACCAAGTTAACTCAATGAGT
GGTATAGTTTTTAGTGCACCACTTAAAAGTAATAATAATAATTCGAAATT
ATCAACATTATCAAAAAGAAAAGAACCAGAGAAAAAGGAACCAATAAATT
ATATCACAACTTTGGAGGGTACTAAAGTAACTAGCCTTTATAACGATGAA
ACATCAACATTAGGTAGTTCAAAACTAAAGGTTATACCATTAACCGAGCA
ATTAAATGAAAACTATGAAAACTCTGATAAAATAGTTGCACAAGTTGCAA
AAGAAATTAAAAAAGAAGAAAAAGAAAATGAAAAAAATGAAAACAATAAC
GACGATAGTAGTAATAAAAAATTAAGAACTGAAGAAAAATTACAACCATT
TTATAAAGCATCACAAACAGGTTTACAATTAAATCCAAATAGAAAACAAG
AGATTAAATCAATCGTGGATGGCAAAAATGAAAATAGTGGTAGTAGCAGT
GGTATACCATTAATTATGAAATTAAAAGATATTGATAAATATGAGAATGA
AACTGACAAATTTAGACATGATGTTGAATCAAGACCTGATGAATCAAATT
TAGATGATTACGAAGA----------CAATCATAGGTGAAGCATTACTAA
GAGGTATGGGATGGGTACCTGGTAAATCAATTGGTTCAACGAATAAAGGT
TTAGTAGAACCAATCGAATATATTAAAAGACCTGGTTTTCGTTTAGGTTT
AGGTGCAAAACCAATGGACGACGATGATGAAATTAGGAAAATGGGTGGTC
CCATTGAAGATGCTGATGGTAAAGTTAGACATGTAAAAGGTATAAATGAA
AAAATCGTATCAAATGTAAAAAAGATGGAAGAGGGTTCTTTAGTAACTGT
CATTGGTGGTCCCCATAAAGGTATGAATGCAAAAATAGTTTCAATGTTAA
AAAATGATAAAGTTCAAATTATTTTCAAATCTGATGAAAAAGTTATAGTT
GATAAATTTGATTTACAACTTTATGATAAAAATTTAACAACAAATAATAA
TAATAACAATAGTAAATCATCAAGTAGTAAATCATCATCATCCTCTTCTA
GTTCATCATCTTATTCATCATCAAGTAGTAAATCATCATCATCTACTTCA
AGTTCTCCATCTTATTCAACATCAAGTTCATCATCATCATCATCATCAAA
TTCAGTTATGTGGATTAGACCACAAATTTTAGTTAAAGTTATTAGTAAAT
CATTGGGAGATGGTAAATATTATAATAAAAAAGCTACAGTTTCAGATATT
TTAGGAGAAAAGTTATGTTCATTACATTTTGATAATGGAGTGGTCGTAGA
GAATGTTAAACAGAGTATGTTAGAAACAGCAATACCAAAAGTAAAGGGTG
ATTTAATTATAGTTAGAGGAAAATATAAAGGAAAAATAGGAACATTAATT
GAAAGAAGAAGAAATAAAAAAGATATTGAAATGGCTATAGTGCAATTAGT
TGGTGATTTATCAGTTTTAGAATTTGATTTAGATGATATTTGCGAATATG
TTGGGAGTAAAGATATTGATTTATATAATTAAAAAAAAAAAAAAAATAAA
AAAAAAAAAATAAAATAAAAATAAAAATAAAAAAAAAAAAAAATTATTTA
TTAAATAAAAA
Gap gap included
Contig length 1701
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 3420002
End point 3418290
Strand (PLUS/MINUS) MINUS
Number of clones 3
Number of EST 6
Link to clone list U00712
List of clone(s) 

est1=SSG114F,1,531
est2=SLH172F,2,163
est3=CFA670F,20,667
est4=CFA670Z,668,1439
est5=SLH172Z,1115,1621
est6=SSG114Z,1333,1703
Translated Amino Acid sequence 
KMEEKNNDVNNNNNNNNNSNIVKDNTNQVNSMSGIVFSAPLKSNNNNSKLSTLSKRKEPE
KKEPINYITTLEGTKVTSLYNDETSTLGSSKLKVIPLTEQLNENYENSDKIVAQVAKEIK
KEEKENEKNENNNDDSSNKKLRTEEKLQPFYKASQTGLQLNPNRKQEIKSIVDGKNENSG
SSSGIPLIMKLKDIDKYENETDKFRHDVESRPDESNLDDYE---

---IIGEALLRGMGWVPGKSIGSTNKGLVEPIEYIKRPGFRLGLGAKPMDDDDEIRKMGG
PIEDADGKVRHVKGINEKIVSNVKKMEEGSLVTVIGGPHKGMNAKIVSMLKNDKVQIIFK
SDEKVIVDKFDLQLYDKNLTTNNNNNNSKSSSSKSSSSSSSSSSYSSSSSKSSSSTSSSP
SYSTSSSSSSSSSNSVMWIRPQILVKVISKSLGDGKYYNKKATVSDILGEKLCSLHFDNG
VVVENVKQSMLETAIPKVKGDLIIVRGKYKGKIGTLIERRRNKKDIEMAIVQLVGDLSVL
EFDLDDICEYVGSKDIDLYN*kkkknkkkkik*k*k*kkkkiiy*ik
Translated Amino Acid sequence (All Frames) 
Frame A:
*ngrek*rce**********yckr*ykps*lnewysf*ctt*k****feiiniikkkrtr
ekgtnklyhnfggy*sn*pl*r*ninir*fktkgytinraik*kl*kl**nsctsckrn*
krrkrk*kk*kq*rr****kikn*rkittil*sitnrftiksk*ktrd*inrgwqk*k*w
**qwytinyeikry**i*e*n*qi*t*c*ikt**ikfr*lrr---

---qs*vkhy*evwdgylvnqlvqrikv**nqsnilkdlvfv*v*vqnqwttmmklgkwv
vplkmlmvkldm*kv*mkksyqm*krwkrvl**lslvvpikv*mqk*fqc*kmikfklfs
nlmkkl*linliynfmiki*qqiiiitivnhqvvnhhhpllvhhlihhqvvnhhhllqvl
hliqhqvhhhhhhqiqlcgldhkf*lkllvnhwemvniiikklqfqif*eksyvhyilim
ews*rmlnrvc*kqqyqk*rvi*l*leenikek*eh*lkeeeikkilkwl*cn*lviyqf
*nli*mifanmlgvkiliyiikkkkkikkkk*nknknkkkkklfik*k

Frame B:
KMEEKNNDVNNNNNNNNNSNIVKDNTNQVNSMSGIVFSAPLKSNNNNSKLSTLSKRKEPE
KKEPINYITTLEGTKVTSLYNDETSTLGSSKLKVIPLTEQLNENYENSDKIVAQVAKEIK
KEEKENEKNENNNDDSSNKKLRTEEKLQPFYKASQTGLQLNPNRKQEIKSIVDGKNENSG
SSSGIPLIMKLKDIDKYENETDKFRHDVESRPDESNLDDYE---

---nhr*sitkrygmgtw*inwfne*rfsrtnriy*ktwfsfrfrcktngrr**n*engw
sh*rc*w*s*tckryk*knrikckkdgrgffsnchwwsp*ryecknsfnvkk**ssnyfq
i**ksys**i*fttl**kfnnk****q**iik**iiiilf*fiilfiik**iiiiyfkfs
ilfnikfiiiiiikfsyvd*ttnfs*sy**iigrw*il**ksysfryfrrkvmfitf**w
sgrrec*teyvrnsntkskg*fnys*rki*rknrnin*kkkk*kry*ngysaisw*fisf
ri*fr*ylricwe*ry*fi*lkkkkk*kkknkikikikkkknyllnk

Frame C:
kwkrkitm*iiiiiiiiivil*kiiqtkltq*vv*flvhhlkviiiirnyqhyqkeknqr
krnq*iisqlwrvlk*lafitmkhqh*vvqn*rlyh*psn*mktmktlik*lhklqkklk
kkkkkmkkmktittivvikn*elkknynhfikhhkqvyn*iqienkrlnqswmakmkivv
vavvyh*l*n*kilinmrmkltnldmmlnqdlmnqi*mitk---

---IIGEALLRGMGWVPGKSIGSTNKGLVEPIEYIKRPGFRLGLGAKPMDDDDEIRKMGG
PIEDADGKVRHVKGINEKIVSNVKKMEEGSLVTVIGGPHKGMNAKIVSMLKNDKVQIIFK
SDEKVIVDKFDLQLYDKNLTTNNNNNNSKSSSSKSSSSSSSSSSYSSSSSKSSSSTSSSP
SYSTSSSSSSSSSNSVMWIRPQILVKVISKSLGDGKYYNKKATVSDILGEKLCSLHFDNG
VVVENVKQSMLETAIPKVKGDLIIVRGKYKGKIGTLIERRRNKKDIEMAIVQLVGDLSVL
EFDLDDICEYVGSKDIDLYN*kkkknkkkkik*k*k*kkkkiiy*ik
own update 2004. 6.21
Homology vs CSM-cDNA 
Query= Contig-U00712-1 (Contig-U00712-1Q)
/CSM_Contig/Contig-U00712-1Q.Seq.d
         (1711 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U00712-1 (Contig-U00712-1Q) /CSM_Contig/Conti...   906  0.0
Contig-U03598-1 (Contig-U03598-1Q) /CSM_Contig/Conti...    52  3e-06
Contig-U12521-1 (Contig-U12521-1Q) /CSM_Contig/Conti...    50  1e-05
Contig-U13409-1 (Contig-U13409-1Q) /CSM_Contig/Conti...    48  5e-05
Contig-U11910-1 (Contig-U11910-1Q) /CSM_Contig/Conti...    48  5e-05
Contig-U11815-1 (Contig-U11815-1Q) /CSM_Contig/Conti...    48  5e-05
Contig-U10791-1 (Contig-U10791-1Q) /CSM_Contig/Conti...    48  5e-05
Contig-U03990-1 (Contig-U03990-1Q) /CSM_Contig/Conti...    48  5e-05
Contig-U16107-1 (Contig-U16107-1Q) /CSM_Contig/Conti...    46  2e-04
Contig-U15744-1 (Contig-U15744-1Q) /CSM_Contig/Conti...    46  2e-04

>Contig-U00712-1 (Contig-U00712-1Q) /CSM_Contig/Contig-U00712-1Q.Seq.d
          Length = 1711

 Score =  906 bits (457), Expect = 0.0
 Identities = 487/487 (100%)
 Strand = Plus / Plus

                                                                       
Query: 394 caataacgacgatagtagtaataaaaaattaagaactgaagaaaaattacaaccatttta 453
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 caataacgacgatagtagtaataaaaaattaagaactgaagaaaaattacaaccatttta 453

                                                                       
Query: 454 taaagcatcacaaacaggtttacaattaaatccaaatagaaaacaagagattaaatcaat 513
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 taaagcatcacaaacaggtttacaattaaatccaaatagaaaacaagagattaaatcaat 513

                                                                       
Query: 514 cgtggatggcaaaaatgaaaatagtggtagtagcagtggtataccattaattatgaaatt 573
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 cgtggatggcaaaaatgaaaatagtggtagtagcagtggtataccattaattatgaaatt 573

                                                                       
Query: 574 aaaagatattgataaatatgagaatgaaactgacaaatttagacatgatgttgaatcaag 633
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 aaaagatattgataaatatgagaatgaaactgacaaatttagacatgatgttgaatcaag 633

                                                                       
Query: 634 acctgatgaatcaaatttagatgattacgaagannnnnnnnnncaatcataggtgaagca 693
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 acctgatgaatcaaatttagatgattacgaagannnnnnnnnncaatcataggtgaagca 693

                                                                       
Query: 694 ttactaagaggtatgggatgggtacctggtaaatcaattggttcaacgaataaaggttta 753
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ttactaagaggtatgggatgggtacctggtaaatcaattggttcaacgaataaaggttta 753

                                                                       
Query: 754 gtagaaccaatcgaatatattaaaagacctggttttcgtttaggtttaggtgcaaaacca 813
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 gtagaaccaatcgaatatattaaaagacctggttttcgtttaggtttaggtgcaaaacca 813

                                                                       
Query: 814 atggacgacgatgatgaaattaggaaaatgggtggtcccattgaagatgctgatggtaaa 873
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 atggacgacgatgatgaaattaggaaaatgggtggtcccattgaagatgctgatggtaaa 873

                  
Query: 874 gttagac 880
           |||||||
Sbjct: 874 gttagac 880


 Score =  567 bits (286), Expect = e-161
 Identities = 286/286 (100%)
 Strand = Plus / Plus

                                                                       
Query: 63  ttgtaaaagataatacaaaccaagttaactcaatgagtggtatagtttttagtgcaccac 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  ttgtaaaagataatacaaaccaagttaactcaatgagtggtatagtttttagtgcaccac 122

                                                                       
Query: 123 ttaaaagtaataataataattcgaaattatcaacattatcaaaaagaaaagaaccagaga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ttaaaagtaataataataattcgaaattatcaacattatcaaaaagaaaagaaccagaga 182

                                                                       
Query: 183 aaaaggaaccaataaattatatcacaactttggagggtactaaagtaactagcctttata 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 aaaaggaaccaataaattatatcacaactttggagggtactaaagtaactagcctttata 242

                                                                       
Query: 243 acgatgaaacatcaacattaggtagttcaaaactaaaggttataccattaaccgagcaat 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 acgatgaaacatcaacattaggtagttcaaaactaaaggttataccattaaccgagcaat 302

                                                         
Query: 303 taaatgaaaactatgaaaactctgataaaatagttgcacaagttgc 348
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 taaatgaaaactatgaaaactctgataaaatagttgcacaagttgc 348


 Score =  438 bits (221), Expect = e-122
 Identities = 221/221 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1249 aattcagttatgtggattagaccacaaattttagttaaagttattagtaaatcattggga 1308
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1249 aattcagttatgtggattagaccacaaattttagttaaagttattagtaaatcattggga 1308

                                                                        
Query: 1309 gatggtaaatattataataaaaaagctacagtttcagatattttaggagaaaagttatgt 1368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1309 gatggtaaatattataataaaaaagctacagtttcagatattttaggagaaaagttatgt 1368

                                                                        
Query: 1369 tcattacattttgataatggagtggtcgtagagaatgttaaacagagtatgttagaaaca 1428
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1369 tcattacattttgataatggagtggtcgtagagaatgttaaacagagtatgttagaaaca 1428

                                                     
Query: 1429 gcaataccaaaagtaaagggtgatttaattatagttagagg 1469
            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1429 gcaataccaaaagtaaagggtgatttaattatagttagagg 1469


 Score =  385 bits (194), Expect = e-106
 Identities = 194/194 (100%)
 Strand = Plus / Plus

                                                                        
Query: 924  gatggaagagggttctttagtaactgtcattggtggtccccataaaggtatgaatgcaaa 983
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924  gatggaagagggttctttagtaactgtcattggtggtccccataaaggtatgaatgcaaa 983

                                                                        
Query: 984  aatagtttcaatgttaaaaaatgataaagttcaaattattttcaaatctgatgaaaaagt 1043
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984  aatagtttcaatgttaaaaaatgataaagttcaaattattttcaaatctgatgaaaaagt 1043

                                                                        
Query: 1044 tatagttgataaatttgatttacaactttatgataaaaatttaacaacaaataataataa 1103
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 tatagttgataaatttgatttacaactttatgataaaaatttaacaacaaataataataa 1103

                          
Query: 1104 taacaatagtaaat 1117
            ||||||||||||||
Sbjct: 1104 taacaatagtaaat 1117


 Score =  196 bits (99), Expect = 8e-50
 Identities = 99/99 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1532 tggctatagtgcaattagttggtgatttatcagttttagaatttgatttagatgatattt 1591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1532 tggctatagtgcaattagttggtgatttatcagttttagaatttgatttagatgatattt 1591

                                                   
Query: 1592 gcgaatatgttgggagtaaagatattgatttatataatt 1630
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 1592 gcgaatatgttgggagtaaagatattgatttatataatt 1630


 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 1  taaaatggaagagaaaaataacgatgtg 28
          ||||||||||||||||||||||||||||
Sbjct: 1  taaaatggaagagaaaaataacgatgtg 28


 Score = 38.2 bits (19), Expect = 0.044
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 1093 aataataataataacaatagtaa 1115
            |||||||||||||| ||||||||
Sbjct: 38   aataataataataataatagtaa 60


 Score = 36.2 bits (18), Expect = 0.17
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 1694 ttatttattaaataaaaa 1711
            ||||||||||||||||||
Sbjct: 1694 ttatttattaaataaaaa 1711


>Contig-U03598-1 (Contig-U03598-1Q) /CSM_Contig/Contig-U03598-1Q.Seq.d
          Length = 1672

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                          
Query: 1086 aacaacaaataataataataacaatagtaa 1115
            ||||||||||||||||||||| ||||||||
Sbjct: 318  aacaacaaataataataataataatagtaa 347


>Contig-U12521-1 (Contig-U12521-1Q) /CSM_Contig/Contig-U12521-1Q.Seq.d
          Length = 1189

 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 1081 aatttaacaacaaataataataataacaatagt 1113
            |||| ||||||||||||||||||||| ||||||
Sbjct: 692  aattcaacaacaaataataataataataatagt 724


 Score = 36.2 bits (18), Expect = 0.17
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 1094 ataataataataacaata 1111
            ||||||||||||||||||
Sbjct: 8    ataataataataacaata 25


 Score = 36.2 bits (18), Expect = 0.17
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                      
Query: 1086 aacaacaaataataataataacaata 1111
            |||| |||||||||||||||| ||||
Sbjct: 736  aacatcaaataataataataataata 761


 Score = 36.2 bits (18), Expect = 0.17
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                      
Query: 1090 acaaataataataataacaatagtaa 1115
            ||||||||||||| ||| ||||||||
Sbjct: 190  acaaataataatagtaataatagtaa 215


  Database: CSM
    Posted date:  Jun 21, 2004 12:56 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 71,584
Number of Sequences: 8402
Number of extensions: 71584
Number of successful extensions: 27117
Number of sequences better than 10.0: 1267
length of query: 1711
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1695
effective length of database: 7,941,110
effective search space: 13460181450
effective search space used: 13460181450
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2009. 4.19
Homology vs DNA 
Query= Contig-U00712-1 (Contig-U00712-1Q) /CSM_Contig/Contig-U00712-1Q.Seq.d
         (1711 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ373304) Dictyostelium discoideum cDNA clone:ddc2k18, 3' e...   408   0.0    5
(BJ359810) Dictyostelium discoideum cDNA clone:ddc2k18, 5' e...   450   0.0    2
(AU039219) Dictyostelium discoideum slug cDNA, clone SLH172.      434   e-167  2
(C90028) Dictyostelium discoideum slug cDNA, clone SSG114.        236   e-111  3
(AU073093) Dictyostelium discoideum slug cDNA, clone SSG114.      323   2e-92  2
(AU062007) Dictyostelium discoideum slug cDNA, clone SLH172.      155   1e-41  2
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2...    38   0.088  12
(AC087744) Homo sapiens chromosome 18 clone RP11-673F9 map 1...    40   0.17   2
(AP001895) Homo sapiens genomic DNA, chromosome 18q12 clone:...    40   0.17   2
(AC012569) Homo sapiens chromosome , clone RP11-8H2, complet...    40   0.17   2
(AP002479) Homo sapiens genomic DNA, chromosome 18q12 clone:...    40   0.17   2
(GC698513) Sequence 13758 from patent US 6812339.                  40   0.19   2
(GC697073) Sequence 12318 from patent US 6812339.                  40   0.19   2
(D28126) Homo sapiens gene for ATP synthase alpha subunit, c...    40   0.19   2
(CR627212) Homo sapiens mRNA; cDNA DKFZp686N10225 (from clon...    40   0.20   2
(CB158563) K-EST0217924 L18POOL1n1 Homo sapiens cDNA clone L...    40   0.22   2
(AA169282) zo92d06.s1 Stratagene ovarian cancer (#937219) Ho...    40   0.22   2
(AC150809) Callithrix jacchus clone CH259-212O6, WORKING DRA...    50   0.29   1
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    36   0.34   10
(CS178150) Sequence 67 from Patent WO2005092918.                   40   0.48   2
(CS178187) Sequence 104 from Patent WO2005092918.                  40   0.50   2
(AC204673) MACACA MULATTA BAC clone CH250-159L13 from chromo...    38   0.62   2
(CR382398) Plasmodium falciparum chromosome 6, complete sequ...    34   0.89   10
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    34   0.94   10
(AC173024) Bos taurus clone CH240-289A10, WORKING DRAFT SEQU...    48   1.1    1
(EJ411874) 1093012155036 Global-Ocean-Sampling_GS-28-01-01-1...    48   1.1    1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    38   1.7    11
(AC163927) Bos taurus clone CH240-130L5, WORKING DRAFT SEQUE...    34   2.2    2
(CP000963) Clostridium botulinum A3 str. Loch Maree plasmid ...    38   2.4    15
(CT602593) Danio rerio EST, clone ZF_mu_51c10 5'.                  34   2.8    3
(FP089136) Brassica napus GSS, clone JBnB157I12, end read, p...    40   3.0    3
(AM439603) Vitis vinifera contig VV78X253760.24, whole genom...    34   3.1    5
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    36   3.5    17
(AC005505) Plasmodium falciparum chromosome 12 clone PFYAC18...    36   3.8    12
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    36   3.9    12
(AC174377) Medicago truncatula chromosome 6 clone mth2-57g20...    46   4.5    1
(DJ358583) METHODS AND NUCLEIC ACIDS FOR THE ANALYSIS OF GEN...    46   4.5    1
(DJ358559) METHODS AND NUCLEIC ACIDS FOR THE ANALYSIS OF GEN...    46   4.5    1
(CS114302) Sequence 1060 from Patent WO2005054517.                 46   4.5    1
(CS114278) Sequence 1036 from Patent WO2005054517.                 46   4.5    1
(U41019) Caenorhabditis elegans cosmid C04E7, complete seque...    46   4.5    1
(AC019163) Homo sapiens BAC clone RP11-87F15 from 4, complet...    46   4.5    1
(CU914500) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   4.5    1
(CU606938) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   4.5    1
(AY881151) Solanum lycopersicum chromosome 10 clone BAC LE_H...    46   4.5    1
(AC202333) Medicago truncatula clone mth2-177f14, WORKING DR...    46   4.5    1
(AC020690) Homo sapiens chromosome 4 clone RP11-489J24 map 4...    46   4.5    1
(AC006778) Caenorhabditis elegans clone Y47C4, *** SEQUENCIN...    46   4.5    1
(ER626625) 1093018210747 Global-Ocean-Sampling_GS-36-01-01-2...    46   4.5    1
(EJ985907) 1093023010188 Global-Ocean-Sampling_GS-30-02-01-1...    46   4.5    1
(EJ441870) 1093015307799 Global-Ocean-Sampling_GS-28-01-01-1...    46   4.5    1
(EJ354518) 1092963622892 Global-Ocean-Sampling_GS-28-01-01-1...    46   4.5    1
(EJ206858) 1092344361398 Global-Ocean-Sampling_GS-27-01-01-1...    46   4.5    1
(EJ073714) 1095458103872 Global-Ocean-Sampling_GS-26-01-01-1...    46   4.5    1
(EJ016898) 1095439018255 Global-Ocean-Sampling_GS-26-01-01-1...    46   4.5    1
(DE901650) Macropus eugenii DNA, BAC clone: MEB1-081P07_R, 3...    46   4.5    1
(CZ953471) 265429 Tomato EcoRI BAC Library Solanum lycopersi...    46   4.5    1
(CZ944805) 310108 Tomato EcoRI BAC Library Solanum lycopersi...    46   4.5    1
(CT194680) Sus scrofa genomic clone CH242-160E22, genomic su...    46   4.5    1
(BZ393289) EINBF44TF EI_10_12_KB Entamoeba invadens genomic ...    46   4.5    1
(EE147456) SiJWD07ABP2 Lausanne fire ant library Solenopsis ...    46   4.5    1
(EE134935) SiJWB02ADS Lausanne fire ant library Solenopsis i...    46   4.5    1
(EC025334) 3803289 KZ41 Caenorhabditis elegans cDNA clone 14...    46   4.5    1
(AU219020) Caenorhabditis elegans cDNA clone:yk872c03 : 3' e...    46   4.5    1
(CB404703) OSTR027A8_2 AD-wrmcDNA Caenorhabditis elegans cDN...    46   4.5    1
(CP000678) Methanobrevibacter smithii ATCC 35061, complete g...    46   4.5    1
(AC179381) Strongylocentrotus purpuratus clone R3-59O7, WORK...    44   4.9    5
(AM442902) Vitis vinifera contig VV78X090561.19, whole genom...    42   5.4    2
(BX195597) Danio rerio genomic clone DKEY-220C5, genomic sur...    36   5.5    2
(EJ870381) 1093018342655 Global-Ocean-Sampling_GS-30-02-01-1...    42   6.1    2
(EK320877) 1095462429181 Global-Ocean-Sampling_GS-31-01-01-1...    36   6.3    2
(FG674883) G1143P310FF10.T0 Anolis carolinensis pooled norma...    38   6.6    2
(CP000940) Clostridium botulinum B1 str. Okra plasmid pCLD, ...    38   6.9    6
(AB082543) Dictyostelium discoideum forB gene for formin hom...    34   7.3    4
(AJ277590) Dictyostelium discoideum iplA gene for inositol 1...    34   7.4    6
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    36   7.4    7
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699...    34   7.8    22
(AC152657) Bos taurus clone CH240-10O13, *** SEQUENCING IN P...    32   7.8    2
(AC217184) Bos taurus clone CH240-17M22, WORKING DRAFT SEQUE...    32   7.9    2
(AC214559) Bos taurus clone CH240-10O13, WORKING DRAFT SEQUE...    32   7.9    2
(AC123317) Rattus norvegicus clone CH230-160M17, *** SEQUENC...    34   7.9    2
(CU914135) Medicago truncatula chromosome 5 clone mth4-3n15,...    32   7.9    2
(DQ021446) Daktulosphaira vitifoliae mitochondrion, partial ...    34   7.9    5
(AC114703) Rattus norvegicus clone CH230-125E17, *** SEQUENC...    32   7.9    2
(AC157031) Bos taurus clone CH240-71G11, WORKING DRAFT SEQUE...    32   8.0    2
(AC094947) Rattus norvegicus clone CH230-6C17, WORKING DRAFT...    32   8.1    2
(AC095434) Rattus norvegicus clone CH230-6P20, *** SEQUENCIN...    32   8.1    2
(AC108336) Rattus norvegicus clone CH230-184E4, *** SEQUENCI...    32   8.1    2
(AC186736) Glycine max clone gmp1-63m15, complete sequence.        34   8.2    2
(AC171251) Bos taurus clone CH240-302M5, WORKING DRAFT SEQUE...    32   8.2    2
(AC110440) Rattus norvegicus clone CH230-310H6, WORKING DRAF...    34   8.2    2
(AC148129) Carollia perspicillata clone 230E11, WORKING DRAF...    32   8.2    2
(AC024971) Homo sapiens chromosome 6 clone RP11-29F4 map 6, ...    32   8.2    2
(AF410153) Swinepox virus isolate 17077-99, complete genome.       32   8.3    2
(AL078591) Human DNA sequence from clone RP1-198I9 on chromo...    32   8.3    2

>(BJ373304) Dictyostelium discoideum cDNA clone:ddc2k18, 3' end,
           single read.
          Length = 768

 Score =  408 bits (206), Expect(5) = 0.0
 Identities = 206/206 (100%)
 Strand = Plus / Minus


Query: 677 caatcataggtgaagcattactaagaggtatgggatgggtacctggtaaatcaattggtt 736
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 caatcataggtgaagcattactaagaggtatgggatgggtacctggtaaatcaattggtt 709


Query: 737 caacgaataaaggtttagtagaaccaatcgaatatattaaaagacctggttttcgtttag 796
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 caacgaataaaggtttagtagaaccaatcgaatatattaaaagacctggttttcgtttag 649


Query: 797 gtttaggtgcaaaaccaatggacgacgatgatgaaattaggaaaatgggtggtcccattg 856
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gtttaggtgcaaaaccaatggacgacgatgatgaaattaggaaaatgggtggtcccattg 589


Query: 857 aagatgctgatggtaaagttagacat 882
           ||||||||||||||||||||||||||
Sbjct: 588 aagatgctgatggtaaagttagacat 563

 Score =  301 bits (152), Expect(5) = 0.0
 Identities = 152/152 (100%)
 Strand = Plus / Minus


Query: 924  gatggaagagggttctttagtaactgtcattggtggtccccataaaggtatgaatgcaaa 983
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521  gatggaagagggttctttagtaactgtcattggtggtccccataaaggtatgaatgcaaa 462


Query: 984  aatagtttcaatgttaaaaaatgataaagttcaaattattttcaaatctgatgaaaaagt 1043
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461  aatagtttcaatgttaaaaaatgataaagttcaaattattttcaaatctgatgaaaaagt 402


Query: 1044 tatagttgataaatttgatttacaactttatg 1075
            ||||||||||||||||||||||||||||||||
Sbjct: 401  tatagttgataaatttgatttacaactttatg 370

 Score =  264 bits (133), Expect(5) = 0.0
 Identities = 135/136 (99%)
 Strand = Plus / Minus


Query: 1250 attcagttatgtggattagaccacaaattttagttaaagttattagtaaatcattgggag 1309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195  attcagttatgtggattagaccacaaattttagttaaagttattagtaaatcattgggag 136


Query: 1310 atggtaaatattataataaaaaagctacagtttcagatattttaggagaaaagttatgtt 1369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135  atggtaaatattataataaaaaagctacagtttcagatattttaggagaaaagttatgtt 76


Query: 1370 cattacattttgataa 1385
            ||||||||||| ||||
Sbjct: 75   cattacattttnataa 60

 Score = 58.0 bits (29), Expect(5) = 0.0
 Identities = 29/29 (100%)
 Strand = Plus / Minus


Query: 1392 ggtcgtagagaatgttaaacagagtatgt 1420
            |||||||||||||||||||||||||||||
Sbjct: 55   ggtcgtagagaatgttaaacagagtatgt 27

 Score = 30.2 bits (15), Expect(5) = 0.0
 Identities = 15/15 (100%)
 Strand = Plus / Minus


Query: 1434 accaaaagtaaaggg 1448
            |||||||||||||||
Sbjct: 15   accaaaagtaaaggg 1

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,569,934,945
Number of extensions: 105275410
Number of successful extensions: 11980566
Number of sequences better than 10.0: 95
Length of query: 1711
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1687
Effective length of database: 99,340,224,878
Effective search space: 167586959369186
Effective search space used: 167586959369186
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.14
Homology vs Protein 
Query= Contig-U00712-1 (Contig-U00712-1Q) /CSM_Contig/Contig-U00712-1Q.Seq.d
         (1711 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC166817_1(BC166817|pid:none) Rattus norvegicus G patch domain a...    86   5e-15
(Q92917) RecName: Full=G patch domain and KOW motifs-containing ...    84   1e-14
(Q56A08) RecName: Full=G patch domain and KOW motifs-containing ...    84   2e-14
BC125335_1(BC125335|pid:none) Mus musculus G patch domain and KO...    84   2e-14
AL929263_11(AL929263|pid:none) Zebrafish DNA sequence from clone...    81   1e-13
(Q90X38) RecName: Full=G patch domain and KOW motifs-containing ...    81   1e-13
AL035523_16(AL035523|pid:none) Arabidopsis thaliana DNA chromoso...    80   3e-13
AY085393_1(AY085393|pid:none) Arabidopsis thaliana clone 149683 ...    79   4e-13
BT086082_1(BT086082|pid:none) Zea mays full-length cDNA clone ZM...    72   5e-11
AP008209_938(AP008209|pid:none) Oryza sativa (japonica cultivar-...    72   6e-11
(Q21924) RecName: Full=Protein mos-2 homolog;  &T24174(T24174) &...    65   8e-09
BT042936_1(BT042936|pid:none) Zea mays full-length cDNA clone ZM...    58   9e-07
BT081430_1(BT081430|pid:none) Rana catesbeiana clone rcat-evr-51...    58   9e-07
AL032654_10(AL032654|pid:none) Caenorhabditis elegans YAC Y52B11...    58   1e-06
(O60870) RecName: Full=DNA/RNA-binding protein KIN17; AltName: F...    56   4e-06
BC079988_1(BC079988|pid:none) Xenopus laevis MGC81626 protein, m...    55   6e-06
BT052448_1(BT052448|pid:none) Medicago truncatula clone MTYFD_FE...    55   6e-06
AK301789_1(AK301789|pid:none) Homo sapiens cDNA FLJ58083 complet...    55   8e-06
AK296637_1(AK296637|pid:none) Homo sapiens cDNA FLJ51227 complet...    55   8e-06
BC074606_1(BC074606|pid:none) Xenopus tropicalis MGC69184 protei...    54   1e-05
(Q4P9X4) RecName: Full=Pre-mRNA-splicing factor SPP2;                  37   2e-05
AC005223_13(AC005223|pid:none) Arabidopsis thaliana chromosome I...    54   2e-05
(Q8K339) RecName: Full=DNA/RNA-binding protein KIN17; AltName: F...    52   5e-05
CP001323_791(CP001323|pid:none) Micromonas sp. RCC299 chromosome...    52   5e-05
AE014296_3534(AE014296|pid:none) Drosophila melanogaster chromos...    50   2e-04
AY084184_1(AY084184|pid:none) Drosophila melanogaster RE65257 fu...    50   2e-04
FN317594_1(FN317594|pid:none) Schistosoma japonicum isolate Anhu...    50   3e-04
BT077322_1(BT077322|pid:none) Caligus rogercresseyi clone crog-e...    50   3e-04
BC109449_1(BC109449|pid:none) Danio rerio KIN, antigenic determi...    50   3e-04
AE014187_641(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    50   3e-04
BC088579_1(BC088579|pid:none) Xenopus tropicalis G patch domain ...    49   4e-04
AP007157_730(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...    39   5e-04
(Q4WP02) RecName: Full=Pre-mRNA-splicing factor spp2;                  37   0.002
AK342237_1(AK342237|pid:none) Acyrthosiphon pisum ACYPI007646 mR...    46   0.004
BC107644_1(BC107644|pid:none) Danio rerio T54 protein-like, mRNA...    46   0.005
AM920437_1893(AM920437|pid:none) Penicillium chrysogenum Wiscons...    37   0.006
BC121738_1(BC121738|pid:none) Danio rerio T54 protein-like, mRNA...    45   0.008
CR940347_1053(CR940347|pid:none) Theileria annulata strain Ankar...    45   0.008
FN314475_1(FN314475|pid:none) Schistosoma japonicum isolate Anhu...    44   0.018
(Q7TQC7) RecName: Full=G patch domain-containing protein 2;            44   0.018
AY814873_1(AY814873|pid:none) Schistosoma japonicum SJCHGC04799 ...    44   0.018
AK053781_1(AK053781|pid:none) Mus musculus 0 day neonate eyeball...    44   0.018
(Q9NW75) RecName: Full=G patch domain-containing protein 2;  &AK...    44   0.018
AK030026_1(AK030026|pid:none) Mus musculus adult male testis cDN...    44   0.018
FN314476_1(FN314476|pid:none) Schistosoma japonicum isolate Anhu...    44   0.018
AM910994_379(AM910994|pid:none) Plasmodium knowlesi strain H chr...    44   0.024
BT087670_1(BT087670|pid:none) Zea mays full-length cDNA clone ZM...    42   0.053
EU969634_1(EU969634|pid:none) Zea mays clone 333416 unknown mRNA.      42   0.053
FN357336_31(FN357336|pid:none) Schistosoma mansoni genome sequen...    42   0.069
(O43031) RecName: Full=Pre-mRNA-splicing factor spp2; AltName: F...    32   0.084
BT034996_1(BT034996|pid:none) Zea mays full-length cDNA clone ZM...    41   0.12
EU970137_1(EU970137|pid:none) Zea mays clone 340442 unknown mRNA.      41   0.12
CP001323_688(CP001323|pid:none) Micromonas sp. RCC299 chromosome...    41   0.15
AP005804_22(AP005804|pid:none) Oryza sativa Japonica Group genom...    40   0.34
CR382124_110(CR382124|pid:none) Kluyveromyces lactis strain NRRL...    40   0.34
(Q6DI35) RecName: Full=Tuftelin-interacting protein 11; AltName:...    40   0.34
DQ342038_1(DQ342038|pid:none) Ciona intestinalis STIP mRNA, comp...    40   0.34
BC017682_1(BC017682|pid:none) Mus musculus tuftelin interacting ...    39   0.45
BC114058_1(BC114058|pid:none) Bos taurus tuftelin interacting pr...    39   0.45
DQ342029_1(DQ342029|pid:none) Bos taurus STIP mRNA, complete cds.      39   0.45
BC033080_1(BC033080|pid:none) Homo sapiens tuftelin interacting ...    39   0.45
(A4UMC5) RecName: Full=Tuftelin-interacting protein 11; AltName:...    39   0.45
(Q06411) RecName: Full=Pre-mRNA-splicing factor SPP382; AltName:...    39   0.45
DQ342037_1(DQ342037|pid:none) Pimephales promelas STIP mRNA, com...    39   0.45
(A1XD95) RecName: Full=Tuftelin-interacting protein 11; AltName:...    39   0.45
(Q5ZII9) RecName: Full=Tuftelin-interacting protein 11; AltName:...    39   0.45
(Q06AK6) RecName: Full=Tuftelin-interacting protein 11; AltName:...    39   0.45
(Q9UBB9) RecName: Full=Tuftelin-interacting protein 11; AltName:...    39   0.45
(Q5U2Y6) RecName: Full=Tuftelin-interacting protein 11; AltName:...    39   0.45
FN357362_18(FN357362|pid:none) Schistosoma mansoni genome sequen...    39   0.59
AE017341_681(AE017341|pid:none) Cryptococcus neoformans var. neo...    32   0.65
FN318996_1(FN318996|pid:none) Schistosoma japonicum isolate Anhu...    39   0.77
(Q94C11) RecName: Full=Splicing factor 4-like protein;          ...    39   0.77
AY813843_1(AY813843|pid:none) Schistosoma japonicum SJCHGC02410 ...    39   0.77
CU928168_658(CU928168|pid:none) Kluyveromyces thermotolerans str...    38   1.0
FN318994_1(FN318994|pid:none) Schistosoma japonicum isolate Anhu...    38   1.0
(Q52E73) RecName: Full=Pre-mRNA-splicing factor SPP2;                  33   1.1
(O94585) RecName: Full=Meiotically up-regulated protein C1442.13...    38   1.3
CP001334_22(CP001334|pid:none) Micromonas sp. RCC299 chromosome ...    38   1.3
CP000500_157(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...    37   1.7
AP005097_12(AP005097|pid:none) Oryza sativa Japonica Group genom...    37   1.7
CP001575_512(CP001575|pid:none) Micromonas sp. RCC299 chromosome...    37   1.7
(Q66J74) RecName: Full=Tuftelin-interacting protein 11; AltName:...    37   1.7
AK164414_1(AK164414|pid:none) Mus musculus 12 days embryo eyebal...    37   2.2
FN357336_32(FN357336|pid:none) Schistosoma mansoni genome sequen...    37   2.2
DQ342034_1(DQ342034|pid:none) Gasterosteus aculeatus STIP mRNA, ...    37   2.2
CP000725_107(CP000725|pid:none) Streptococcus gordonii str. Chal...    37   2.9
DQ779880_1(DQ779880|pid:none) Ammopiptanthus mongolicus putative...    37   2.9
FN357589_4(FN357589|pid:none) Schistosoma mansoni genome sequenc...    37   2.9
BC157984_1(BC157984|pid:none) Mus musculus predicted gene, OTTMU...    36   3.8
DQ342039_1(DQ342039|pid:none) Ciona savignyi STIP mRNA, complete...    36   3.8
AC015985_9(AC015985|pid:none) Arabidopsis thaliana chromosome II...    36   5.0
BC121497_1(BC121497|pid:none) Xenopus tropicalis STIP, mRNA (cDN...    36   5.0
DQ158857_96(DQ158857|pid:none) Bigelowiella natans nucleomorph c...    36   5.0
BT080500_1(BT080500|pid:none) Caligus clemensi clone ccle-evs-52...    36   5.0
AL132957_19(AL132957|pid:none) Arabidopsis thaliana DNA chromoso...    35   6.5
AF000263_8(AF000263|pid:none) Caenorhabditis elegans cosmid T08B...    35   8.5
AF000263_12(AF000263|pid:none) Caenorhabditis elegans cosmid T08...    35   8.5
AF000263_11(AF000263|pid:none) Caenorhabditis elegans cosmid T08...    35   8.5
AF000263_7(AF000263|pid:none) Caenorhabditis elegans cosmid T08B...    35   8.5
FN357618_21(FN357618|pid:none) Schistosoma mansoni genome sequen...    35   8.5
AP007155_925(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...    35   8.5
AM443301_1(AM443301|pid:none) Vitis vinifera contig VV78X197732....    35   8.5
EU962659_1(EU962659|pid:none) Zea mays clone 244506 unknown mRNA.      35   8.5
(Q0TRE5) RecName: Full=(Dimethylallyl)adenosine tRNA methylthiot...    35   8.5
AF000263_13(AF000263|pid:none) Caenorhabditis elegans cosmid T08...    35   8.5

>BC166817_1(BC166817|pid:none) Rattus norvegicus G patch domain and
            KOW motifs, mRNA (cDNA clone MGC:188683 IMAGE:8365193),
            complete cds.
          Length = 357

 Score = 85.5 bits (210), Expect = 5e-15
 Identities = 46/121 (38%), Positives = 69/121 (57%), Gaps = 1/121 (0%)
 Frame = +1

Query: 1261 WIRPQILVKVISKSLGDGKYYNKKATVSDILGEKLCSLHFDNGVVVENVKQSMLETAIPK 1440
            W+   + V+ I K    G+YYN K T+ D+L    C    D G V+E VK+ MLET +P+
Sbjct: 238  WLHRDLRVRFIDKVHKGGRYYNTKMTIEDVLSPGTCVCRTDEGRVLEGVKEGMLETLVPR 297

Query: 1441 VKGD-LIIVRGKYKGKIGTLIERRRNKKDIEMAIVQLVGDLSVLEFDLDDICEYVGSKDI 1617
             +G  +++V G + GK+G L+ R R +     A+VQL  +  V+E   D IC+Y+G  D
Sbjct: 298  GEGHRVMVVLGPHAGKVGLLLRRDRAQSH---AMVQLGRENQVVELHYDAICQYMGPGDS 354

Query: 1618 D 1620
            D
Sbjct: 355  D 355

 Score = 47.8 bits (112), Expect = 0.001
 Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
 Frame = +1

Query: 685 GEALLRGMGWVPGKSIGSTNKGLVEP-IEYIKRPGFRLGLGAKPMDDDDEIRKMGG---P 852
           G A+LRGMGW PGK IG+T   +V+P +  I+  G  LGLGA  M +   +   G    P
Sbjct: 37  GLAMLRGMGWKPGKGIGNTFSQVVKPRVNSIRPKG--LGLGANLM-ETQALASTGSHHPP 93

Query: 853 IEDADGKVRHVKGINEKIVSNVKKMEEGSLVTVIGGPHKGMNAKI 987
             D D + +  +G  + ++        G  V V+ GP++G+  K+
Sbjct: 94  RPDGD-REKDKEGQPQGLM-------HGGAVVVLSGPYRGLYGKV 130

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,761,884,270
Number of extensions: 28036560
Number of successful extensions: 85579
Number of sequences better than 10.0: 106
Number of HSP's gapped: 85514
Number of HSP's successfully gapped: 128
Length of query: 570
Length of database: 1,051,180,864
Length adjustment: 134
Effective length of query: 436
Effective length of database: 617,481,958
Effective search space: 269222133688
Effective search space used: 269222133688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.45  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: vesicles of secretory system
	  4.0 %: mitochondrial
	  4.0 %: Golgi

>> prediction for Contig-U00712-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0