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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15288-1
Contig ID Contig-U15288-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15288-1 (Contig-U15288-1Q) /CSM_Contig/Contig-U15288-1Q.Seq.d
AAAAAAAAAGTAAAATAAAAAGTAAAAAGAGTAAATTAATAATAATAAAG
TCAAAATTAAATAATAAAAAATATATAAATAATTAATTATACATTATATA
TAATCAACAATGAGTATGAATGTTACAAATCCAAATATTGCCAAAACCTC
AATGAGGGGTTTGACAAATTTTATTTCAGATTTAAGAAATTCACCATCAA
AAGAAAATGAAGAAAAAAGAGTTACTAAAGAAATGGCACATATTAGAAAA
GAATTTAAAGAAAATAAAAATATTGATGGTTATCAAAGAAGAAAATATGT
TTGTAAATTAGTTTACATGTATATGCTTGGATATGAATTGGATTTTGGAC
ATATGGAGGCTGTGACTTTATTATCTTCTACAAAATTTTCAGAAAAACAA
ATTGGATATATAGCATTAGGTATTTTATTAAATGAACAACATGAAATGTT
ACCATTAATTATCAATTCATTTAAAGAGGATTTATTGGCACGTAGTGATT
ATTTCCAATCATTAGCATTGGCTGCCATTTGTAATATAGGAGGTAAAGAA
GTTGCAGAGTTTTTATCACCATTAATTCAAAAATTATTAATTGCAAATAC
ATCATCACCAATGGTTAAAAAAAGATGTGCATTAGCAATTTTAAGAATGA
ATCGTAAACATATTGGTTTGGTTACACCAGATTCATGGGTTGAACGTTTA
GTATCAGTTTTGGATGAACCAGACTTTGGTGTATTAACGTCATTAATGAG
TTTATTAATTGAATTAGCTTCTGAAAATCCTATTGGTTGGGAACCTGCAA
TTCCAAAAGTTATTCATTTATTAAAAAAGATTATAATTAATAAAGAATTT
CCAAAAGAATATGTTTATTATCATGTTACATGCCCATGGTTACAAGTTAA
ATTATTAAAATTCCTCAGATATTTCCCAGCTTCAGATGATTCACAAGGTG
GTAAAGTTTTAGGTGAAATTTTAACAGCAGTATTTGCTCAATCTGAATCA
GCAAAAGCAGGAACTGTAAATCATAAAAATTCTTTAAATGCTGTTTTATT
TGAAGCTATAAATTTGATTATTCATCTTGATAATGATCCAGTTTTATTAA
AACAAACATCATTATTATTGGGTCGTTTTATTACAGTAAAAGAAACCAAT
ATTAGATATTTAGGTTTAGAAGCAATGTCACATTTTGCTTCTTTATCAAA
TGAAACTTCAATTATGATTAAAAAATATCAAGATACTGTTTTATTATCAT
TAAAAGATTCAGATATCAGTATTAGA
Gap no gap
Contig length 1276
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 3005858
End point 3007133
Strand (PLUS/MINUS) PLUS
Number of clones 10
Number of EST 10
Link to clone list U15288
List of clone(s) 

est1=AHF893F,1,533
est2=SHH127F,124,666
est3=AHA175F,207,803
est4=CHR358F,230,850
est5=CHF816F,284,754
est6=AHR438F,404,1060
est7=CHM383F,424,700
est8=VHP865F,469,1118
est9=AHF731F,609,1155
est10=AHQ278F,651,1276
Translated Amino Acid sequence 
kkk*nkk*ke*innnkvkik**kiyk*liihyi*STMSMNVTNPNIAKTSMRGLTNFISD
LRNSPSKENEEKRVTKEMAHIRKEFKENKNIDGYQRRKYVCKLVYMYMLGYELDFGHMEA
VTLLSSTKFSEKQIGYIALGILLNEQHEMLPLIINSFKEDLLARSDYFQSLALAAICNIG
GKEVAEFLSPLIQKLLIANTSSPMVKKRCALAILRMNRKHIGLVTPDSWVERLVSVLDEP
DFGVLTSLMSLLIELASENPIGWEPAIPKVIHLLKKIIINKEFPKEYVYYHVTCPWLQVK
LLKFLRYFPASDDSQGGKVLGEILTAVFAQSESAKAGTVNHKNSLNAVLFEAINLIIHLD
NDPVLLKQTSLLLGRFITVKETNIRYLGLEAMSHFASLSNETSIMIKKYQDTVLLSLKDS
DISIR
Translated Amino Acid sequence (All Frames) 
Frame A:
kkkvk*kvkrvn****sqn*iikni*iinytlyiinneyecykskycqnlnegfdkfyfr
fkkftikrk*rkksy*rngty*kri*rk*ky*wlskkkicl*islhvyawi*igfwtygg
cdfiifykifrktnwiysiryfik*tt*nvtinyqfi*rgfigt**lfpiisigchl*yr
r*rscrvfitinskiinckyiitng*kkmcisnfknes*tywfgytrfmg*tfsisfg*t
rlwcinvinefin*isf*ksywlgtcnsksysfikkdyn**riskricllscympmvts*
iikipqifpsfr*ftrw*sfr*nfnssicsi*isksrncks*kffkccfi*sykfdyss*
**ssfiktniiiigsfyyskrnqy*ifrfrsnvtfcffik*nfnyd*kisrycfiiikrf
ryqy*


Frame B:
kkk*nkk*ke*innnkvkik**kiyk*liihyi*STMSMNVTNPNIAKTSMRGLTNFISD
LRNSPSKENEEKRVTKEMAHIRKEFKENKNIDGYQRRKYVCKLVYMYMLGYELDFGHMEA
VTLLSSTKFSEKQIGYIALGILLNEQHEMLPLIINSFKEDLLARSDYFQSLALAAICNIG
GKEVAEFLSPLIQKLLIANTSSPMVKKRCALAILRMNRKHIGLVTPDSWVERLVSVLDEP
DFGVLTSLMSLLIELASENPIGWEPAIPKVIHLLKKIIINKEFPKEYVYYHVTCPWLQVK
LLKFLRYFPASDDSQGGKVLGEILTAVFAQSESAKAGTVNHKNSLNAVLFEAINLIIHLD
NDPVLLKQTSLLLGRFITVKETNIRYLGLEAMSHFASLSNETSIMIKKYQDTVLLSLKDS
DISIR


Frame C:
kkskikskkskliiiksklnnkkyinn*lyiiynqq*v*mlqiqilpkpq*gv*qilfqi
*eihhqkkmkkkellkkwhileknlkkikilmvikeenmfvn*ftcicldmnwildiwrl
*lyyllqnfqknkldi*h*vfy*mnnmkcyh*lsihlkriywhvviisnh*hwlpfvi*e
vkklqsfyhh*fkny*lqihhhqwlkkdvh*qf*e*ivnilvwlhqihglnv*yqfwmnq
tlvy*rh**vy*ln*llkillvgnlqfqklfiy*krl*liknfqknmfiimlhahgykln
y*nssdisqlqmihkvvkf*vkf*qqyllnlnqqkqel*iikil*mlfylkl*i*lfili
miqfy*nkhhyywvvllq*kkpildi*v*kqchilllyqmklql*lknikilfyyh*kiq
isvl
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15288-1 (Contig-U15288-1Q)
/CSM_Contig/Contig-U15288-1Q.Seq.d
         (1276 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15288-1 (Contig-U15288-1Q) /CSM_Contig/Conti...  2282  0.0
Contig-U12710-1 (Contig-U12710-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U11416-1 (Contig-U11416-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U15688-1 (Contig-U15688-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U11901-1 (Contig-U11901-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U16371-1 (Contig-U16371-1Q) /CSM_Contig/Conti...    38  0.033
Contig-U15839-1 (Contig-U15839-1Q) /CSM_Contig/Conti...    38  0.033
Contig-U15792-1 (Contig-U15792-1Q) /CSM_Contig/Conti...    38  0.033
Contig-U11487-1 (Contig-U11487-1Q) /CSM_Contig/Conti...    38  0.033
Contig-U11457-1 (Contig-U11457-1Q) /CSM_Contig/Conti...    38  0.033

>Contig-U15288-1 (Contig-U15288-1Q) /CSM_Contig/Contig-U15288-1Q.Seq.d
          Length = 1276

 Score = 2282 bits (1151), Expect = 0.0
 Identities = 1165/1172 (99%)
 Strand = Plus / Plus

                                                                        
Query: 105  caacaatgagtatgaatgttacaaatccaaatattgccaaaacctcaatgaggggtttga 164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105  caacaatgagtatgaatgttacaaatccaaatattgccaaaacctcaatgaggggtttga 164

                                                                        
Query: 165  caaattttatttcagatttaagaaattcaccatcaaaagaaaatgaagaaaaaagagtta 224
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165  caaattttatttcagatttaagaaattcaccatcaaaagaaaatgaagaaaaaagagtta 224

                                                                        
Query: 225  ctaaagaaatggcacatattagaaaagaatttaaagaaaataaaaatattgatggttatc 284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225  ctaaagaaatggcacatattagaaaagaatttaaagaaaataaaaatattgatggttatc 284

                                                                        
Query: 285  aaagaagaaaatatgtttgtaaattagtttacatgtatatgcttggatatgaattggatt 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285  aaagaagaaaatatgtttgtaaattagtttacatgtatatgcttggatatgaattggatt 344

                                                                        
Query: 345  ttggacatatggaggctgtgactttattatcttctacaaaattttcagaaaaacaaattg 404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345  ttggacatatggaggctgtgactttattatcttctacaaaattttcagaaaaacaaattg 404

                                                                        
Query: 405  gatatatagcattaggtattttattaaatgaacaacatgaaatgttaccattaattatca 464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405  gatatatagcattaggtattttattaaatgaacaacatgaaatgttaccattaattatca 464

                                                                        
Query: 465  attcatttaaagaggatttattggcacgtagtgattatttccaatcattagcattggctg 524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465  attcatttaaagaggatttattggcacgtagtgattatttccaatcattagcattggctg 524

                                                                        
Query: 525  ccatttgtaatataggaggtaaagaagttgcagagtttttatcaccattaattcaaaaat 584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525  ccatttgtaatataggaggtaaagaagttgcagagtttttatcaccattaattcaaaaat 584

                                                                        
Query: 585  tattaattgcaaatacatcatcaccaatggttnnnnnnngatgtgcattagcaattttaa 644
            ||||||||||||||||||||||||||||||||       |||||||||||||||||||||
Sbjct: 585  tattaattgcaaatacatcatcaccaatggttaaaaaaagatgtgcattagcaattttaa 644

                                                                        
Query: 645  gaatgaatcgtaaacatattggtttggttacaccagattcatgggttgaacgtttagtat 704
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645  gaatgaatcgtaaacatattggtttggttacaccagattcatgggttgaacgtttagtat 704

                                                                        
Query: 705  cagttttggatgaaccagactttggtgtattaacgtcattaatgagtttattaattgaat 764
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705  cagttttggatgaaccagactttggtgtattaacgtcattaatgagtttattaattgaat 764

                                                                        
Query: 765  tagcttctgaaaatcctattggttgggaacctgcaattccaaaagttattcatttattaa 824
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765  tagcttctgaaaatcctattggttgggaacctgcaattccaaaagttattcatttattaa 824

                                                                        
Query: 825  aaaagattataattaataaagaatttccaaaagaatatgtttattatcatgttacatgcc 884
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825  aaaagattataattaataaagaatttccaaaagaatatgtttattatcatgttacatgcc 884

                                                                        
Query: 885  catggttacaagttaaattattaaaattcctcagatatttcccagcttcagatgattcac 944
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885  catggttacaagttaaattattaaaattcctcagatatttcccagcttcagatgattcac 944

                                                                        
Query: 945  aaggtggtaaagttttaggtgaaattttaacagcagtatttgctcaatctgaatcagcaa 1004
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945  aaggtggtaaagttttaggtgaaattttaacagcagtatttgctcaatctgaatcagcaa 1004

                                                                        
Query: 1005 aagcaggaactgtaaatcataaaaattctttaaatgctgttttatttgaagctataaatt 1064
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 aagcaggaactgtaaatcataaaaattctttaaatgctgttttatttgaagctataaatt 1064

                                                                        
Query: 1065 tgattattcatcttgataatgatccagttttattaaaacaaacatcattattattgggtc 1124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 tgattattcatcttgataatgatccagttttattaaaacaaacatcattattattgggtc 1124

                                                                        
Query: 1125 gttttattacagtaaaagaaaccaatattagatatttaggtttagaagcaatgtcacatt 1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1125 gttttattacagtaaaagaaaccaatattagatatttaggtttagaagcaatgtcacatt 1184

                                                                        
Query: 1185 ttgcttctttatcaaatgaaacttcaattatgattaaaaaatatcaagatactgttttat 1244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1185 ttgcttctttatcaaatgaaacttcaattatgattaaaaaatatcaagatactgttttat 1244

                                            
Query: 1245 tatcattaaaagattcagatatcagtattaga 1276
            ||||||||||||||||||||||||||||||||
Sbjct: 1245 tatcattaaaagattcagatatcagtattaga 1276


>Contig-U12710-1 (Contig-U12710-1Q) /CSM_Contig/Contig-U12710-1Q.Seq.d
          Length = 1548

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 1191 ctttatcaaatgaaacttcaattat 1215
            |||||||||||||||||| ||||||
Sbjct: 1100 ctttatcaaatgaaactttaattat 1124


>Contig-U11416-1 (Contig-U11416-1Q) /CSM_Contig/Contig-U11416-1Q.Seq.d
          Length = 958

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 252 aatttaaagaaaataaaaata 272
           |||||||||||||||||||||
Sbjct: 131 aatttaaagaaaataaaaata 111


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 37,027
Number of Sequences: 8402
Number of extensions: 37027
Number of successful extensions: 4314
Number of sequences better than 10.0: 471
length of query: 1276
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1260
effective length of database: 7,941,110
effective search space: 10005798600
effective search space used: 10005798600
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.18
Homology vs DNA 
Query= Contig-U15288-1 (Contig-U15288-1Q) /CSM_Contig/Contig-U15288-1Q.Seq.d
         (1276 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ339033) Dictyostelium discoideum cDNA clone:dda63k20, 5' ...  1233   0.0    1
(BJ333359) Dictyostelium discoideum cDNA clone:dda42n07, 5' ...  1047   0.0    1
(BJ427463) Dictyostelium discoideum cDNA clone:ddv62b18, 5' ...   973   0.0    2
(BJ339452) Dictyostelium discoideum cDNA clone:dda65l10, 5' ...   860   0.0    2
(BJ371068) Dictyostelium discoideum cDNA clone:ddc56d15, 5' ...   684   0.0    2
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...   500   0.0    8
(BJ330507) Dictyostelium discoideum cDNA clone:dda31e19, 5' ...   684   0.0    2
(BJ364849) Dictyostelium discoideum cDNA clone:ddc33p04, 5' ...   660   0.0    2
(BJ395276) Dictyostelium discoideum cDNA clone:dds38e07, 5' ...   684   0.0    3
(BJ333472) Dictyostelium discoideum cDNA clone:dda42j24, 5' ...   513   0.0    2
(BJ368456) Dictyostelium discoideum cDNA clone:ddc46f21, 5' ...   373   e-138  2
(BQ613225) rd03e12.y1 Meloidogyne incognita egg SL1 TOPO v1 ...    44   2e-05  2
(DB964465) Glycine max cDNA, clone: GMFL02-26-B20, 5'end.          62   6e-05  1
(BW652959) Glycine max cDNA clone: GMFL01-04-H24, 5'end, sim...    62   6e-05  1
(DY885750) CeleSEQ1166 Cunninghamella elegans pBluescript (E...    58   1e-04  2
(DY891556) CeleSEQ10278 Cunninghamella elegans pBluescript (...    58   1e-04  2
(CP000728) Clostridium botulinum F str. Langeland, complete ...    38   6e-04  20
(EC759324) PPE00001964 Agencourt Biosciences Agen-0020 Non-n...    38   8e-04  2
(GE380979) 292372852 Nasonia vitripennis Male Pupae Nasonia ...    40   8e-04  2
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    36   0.002  20
(AU082763) Glomus intraradices cDNA clone:240, 5' end, expre...    56   0.004  1
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome.    38   0.004  20
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet...    38   0.005  21
(AM285302) Spiroplasma citri GII3-3X chromosome, contig Cont...    34   0.006  11
(AC162739) Loxodonta africana clone VMRC15-278P20, WORKING D...    40   0.019  5
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    36   0.037  11
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)...    34   0.041  19
(ER863092) POTJL90TR Solanum tuberosum RHPOTKEY BAC ends Sol...    52   0.055  1
(EC388341) B06_B06gm4i12_pDNRf_491725 Myzus persicae, line G...    50   0.073  2
(CP000993) Borrelia recurrentis A1, complete genome.               38   0.095  20
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6...    32   0.16   15
(EY346212) CAWZ14543.fwd CAWZ Helobdella robusta Primary Lat...    38   0.16   2
(AC125160) Mus musculus BAC clone RP24-409P4 from chromosome...    50   0.22   1
(AC220965) Homo sapiens FOSMID clone ABC11-49478500O18 from ...    50   0.22   1
(AC069524) Homo sapiens 3 BAC RP11-181C6 (Roswell Park Cance...    50   0.22   1
(AC072040) Homo sapiens chromosome 3 clone RP11-219P9, WORKI...    50   0.22   1
(AC069238) Homo sapiens chromosome 3 clone RP11-176F14, WORK...    50   0.22   1
(AC067730) Homo sapiens chromosome 3 clone RP11-566E10, WORK...    50   0.22   1
(AC027294) Homo sapiens chromosome 3 clone RP11-151F18, WORK...    50   0.22   1
(AC017107) Homo sapiens chromosome 3 clone RP11-566E10, WORK...    50   0.22   1
(EJ395414) 1093011994701 Global-Ocean-Sampling_GS-28-01-01-1...    34   0.28   4
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    36   0.32   19
(AC019990) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    38   0.32   3
(AC123897) Oryza sativa Japonica Group chromosome 11 clone O...    34   0.38   8
(AC109459) Homo sapiens chromosome 5 clone RP11-260E4, compl...    38   0.40   6
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    34   0.40   14
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g...    36   0.64   19
(AP008212) Oryza sativa (japonica cultivar-group) genomic DN...    48   0.85   1
(AP002838) Oryza sativa Japonica Group genomic DNA, chromoso...    48   0.85   1
(AP001168) Oryza sativa Japonica Group genomic DNA, chromoso...    48   0.85   1
(AK122004) Oryza sativa Japonica Group cDNA clone:J033110L01...    48   0.85   1
(EA693411) Sequence 72290 from patent US 7365185.                  48   0.85   1
(AC128495) Rattus norvegicus clone CH230-14C15, *** SEQUENCI...    48   0.85   1
(AC096166) Rattus norvegicus clone CH230-11H6, *** SEQUENCIN...    48   0.85   1
(AC206846) Zea mays chromosome 1 clone CH201-537D21; ZMMBBc0...    48   0.85   1
(EJ940601) 1093018862740 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.85   1
(EJ785252) 1093017310920 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.85   1
(CC392513) PUHMG89TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    48   0.85   1
(EH616373) EST_YP003xo20f1.ab1 EST_YP Nicotiana tabacum cDNA...    48   0.85   1
(EC824087) SME00003620 esmbsro2 Sawyeria marylandensis cDNA,...    48   0.85   1
(EC822696) SME00004252 esmbsro2 Sawyeria marylandensis cDNA,...    48   0.85   1
(DV093148) 327-384-48_G07_M13-FP Nematostella vectensis norm...    48   0.85   1
(DB715575) Solanum lycopersicum cDNA, clone: LEFL2020I19, 5'...    48   0.85   1
(DB686829) Solanum lycopersicum cDNA, clone: LEFL1027BE10, 5...    48   0.85   1
(CT855880) Oryza sativa Indica Group EST sequence:OSIGCPI020...    48   0.85   1
(CT791939) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   0.85   1
(CI384226) Oryza sativa Japonica Group cDNA, clone: J03B3110...    48   0.85   1
(CI110849) Oryza sativa Japonica Group cDNA, clone: 022-M013...    48   0.85   1
(CI103176) Oryza sativa Japonica Group cDNA, clone: 020-M064...    48   0.85   1
(CI101927) Oryza sativa Japonica Group cDNA, clone: 020-M046...    48   0.85   1
(CI043310) Oryza sativa Japonica Group cDNA, clone: 011-M042...    48   0.85   1
(CA761999) BR060002B10C10.ab1 IRRI clones Oryza sativa Indic...    48   0.85   1
(FE673251) mh1_0033_E07 Drought-stressed chickpea leave libr...    48   0.85   1
(FC323423) CAIC9138.fwd CAIC Nematostella vectensis Nemve wh...    48   0.85   1
(FC323422) CAIC9138.rev CAIC Nematostella vectensis Nemve wh...    48   0.85   1
(FC317115) CAIC6056.fwd CAIC Nematostella vectensis Nemve wh...    48   0.85   1
(FC298431) CAGN9781.rev CAGN Nematostella vectensis Nemve mi...    48   0.85   1
(FC298235) CAGN9675.rev CAGN Nematostella vectensis Nemve mi...    48   0.85   1
(FC297862) CAGN9478.rev CAGN Nematostella vectensis Nemve mi...    48   0.85   1
(FC297532) CAGN9303.rev CAGN Nematostella vectensis Nemve mi...    48   0.85   1
(FC297370) CAGN9217.rev CAGN Nematostella vectensis Nemve mi...    48   0.85   1
(FC296975) CAGN9006.rev CAGN Nematostella vectensis Nemve mi...    48   0.85   1
(FC296796) CAGN8903.rev CAGN Nematostella vectensis Nemve mi...    48   0.85   1
(FC295450) CAGN8174.rev CAGN Nematostella vectensis Nemve mi...    48   0.85   1
(FC295101) CAGN798.rev CAGN Nematostella vectensis Nemve mix...    48   0.85   1
(FC294877) CAGN7863.rev CAGN Nematostella vectensis Nemve mi...    48   0.85   1
(FC294327) CAGN7575.rev CAGN Nematostella vectensis Nemve mi...    48   0.85   1
(FC294021) CAGN7408.rev CAGN Nematostella vectensis Nemve mi...    48   0.85   1
(FC293974) CAGN7383.rev CAGN Nematostella vectensis Nemve mi...    48   0.85   1
(FC293719) CAGN7241.rev CAGN Nematostella vectensis Nemve mi...    48   0.85   1
(FC293640) CAGN7201.rev CAGN Nematostella vectensis Nemve mi...    48   0.85   1
(FC293501) CAGN7131.rev CAGN Nematostella vectensis Nemve mi...    48   0.85   1
(FC292412) CAGN6561.rev CAGN Nematostella vectensis Nemve mi...    48   0.85   1
(FC291850) CAGN627.rev CAGN Nematostella vectensis Nemve mix...    48   0.85   1
(FC291743) CAGN6213.rev CAGN Nematostella vectensis Nemve mi...    48   0.85   1
(FC291394) CAGN6024.rev CAGN Nematostella vectensis Nemve mi...    48   0.85   1
(FC291300) CAGN5973.fwd CAGN Nematostella vectensis Nemve mi...    48   0.85   1
(FC291299) CAGN5973.rev CAGN Nematostella vectensis Nemve mi...    48   0.85   1
(FC291248) CAGN5949.rev CAGN Nematostella vectensis Nemve mi...    48   0.85   1
(FC290921) CAGN5779.rev CAGN Nematostella vectensis Nemve mi...    48   0.85   1

>(BJ339033) Dictyostelium discoideum cDNA clone:dda63k20, 5' end,
            single read.
          Length = 626

 Score = 1233 bits (622), Expect = 0.0
 Identities = 625/626 (99%)
 Strand = Plus / Plus


Query: 651  atcgtaaacatattggtttggttacaccagattcatgggttgaacgtttagtatcagttt 710
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    atcgtaaacatattggtttggttacaccagattcatgggttgaacgtttagtatcagttt 60


Query: 711  tggatgaaccagactttggtgtattaacgtcattaatgagtttattaattgaattagctt 770
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   tggatgaaccagactttggtgtattaacgtcattaatgagtttattaattgaattagctt 120


Query: 771  ctgaaaatcctattggttgggaacctgcaattccaaaagttattcatttattaaaaaaga 830
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  ctgaaaatcctattggttgggaacctgcaattccaaaagttattcatttattaaaaaaga 180


Query: 831  ttataattaataaagaatttccaaaagaatatgtttattatcatgttacatgcccatggt 890
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  ttataattaataaagaatttccaaaagaatatgtttattatcatgttacatgcccatggt 240


Query: 891  tacaagttaaattattaaaattcctcagatatttcccagcttcagatgattcacaaggtg 950
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 241  tacaagttaaattattaaaattcctcagatatttcccagctccagatgattcacaaggtg 300


Query: 951  gtaaagttttaggtgaaattttaacagcagtatttgctcaatctgaatcagcaaaagcag 1010
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  gtaaagttttaggtgaaattttaacagcagtatttgctcaatctgaatcagcaaaagcag 360


Query: 1011 gaactgtaaatcataaaaattctttaaatgctgttttatttgaagctataaatttgatta 1070
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  gaactgtaaatcataaaaattctttaaatgctgttttatttgaagctataaatttgatta 420


Query: 1071 ttcatcttgataatgatccagttttattaaaacaaacatcattattattgggtcgtttta 1130
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  ttcatcttgataatgatccagttttattaaaacaaacatcattattattgggtcgtttta 480


Query: 1131 ttacagtaaaagaaaccaatattagatatttaggtttagaagcaatgtcacattttgctt 1190
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  ttacagtaaaagaaaccaatattagatatttaggtttagaagcaatgtcacattttgctt 540


Query: 1191 ctttatcaaatgaaacttcaattatgattaaaaaatatcaagatactgttttattatcat 1250
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  ctttatcaaatgaaacttcaattatgattaaaaaatatcaagatactgttttattatcat 600


Query: 1251 taaaagattcagatatcagtattaga 1276
            ||||||||||||||||||||||||||
Sbjct: 601  taaaagattcagatatcagtattaga 626

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,611,851,723
Number of extensions: 104163811
Number of successful extensions: 8991648
Number of sequences better than 10.0: 375
Length of query: 1276
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1252
Effective length of database: 100,704,341,533
Effective search space: 126081835599316
Effective search space used: 126081835599316
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.15
Homology vs Protein 
Query= Contig-U15288-1 (Contig-U15288-1Q) /CSM_Contig/Contig-U15288-1Q.Seq.d
         (1276 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86KI1) RecName: Full=AP-2 complex subunit alpha-2; AltName: Fu...   759   0.0
AM270309_54(AM270309|pid:none) Aspergillus niger contig An14c001...   368   e-100
AM920428_660(AM920428|pid:none) Penicillium chrysogenum Wisconsi...   365   2e-99
AP007172_52(AP007172|pid:none) Aspergillus oryzae RIB40 genomic ...   354   3e-96
AK319011_1(AK319011|pid:none) Arabidopsis thaliana AT5G22770 mRN...   350   5e-95
AY099646_1(AY099646|pid:none) Arabidopsis thaliana alpha-adaptin...   350   5e-95
AY099568_1(AY099568|pid:none) Arabidopsis thaliana alpha-adaptin...   350   5e-95
AB024030_1(AB024030|pid:none) Arabidopsis thaliana genomic DNA, ...   342   2e-92
AB006699_19(AB006699|pid:none) Arabidopsis thaliana genomic DNA,...   335   3e-90
(P91926) RecName: Full=AP-2 complex subunit alpha; AltName: Full...   307   5e-82
(Q7QG73) RecName: Full=AP-2 complex subunit alpha; AltName: Full...   307   6e-82
(Q29N38) RecName: Full=AP-2 complex subunit alpha; AltName: Full...   306   1e-81
AK088500_1(AK088500|pid:none) Mus musculus 2 days neonate thymus...   303   9e-81
(P18484) RecName: Full=AP-2 complex subunit alpha-2; AltName: Fu...   303   9e-81
BC122995_1(BC122995|pid:none) Xenopus tropicalis adaptor-related...   300   7e-80
AJ851566_1(AJ851566|pid:none) Gallus gallus mRNA for hypothetica...   300   1e-79
U28742_2(U28742|pid:none) Caenorhabditis elegans cosmid T20B5, c...   299   1e-79
BC067918_1(BC067918|pid:none) Xenopus tropicalis adaptor-related...   299   2e-79
CR848593_1(CR848593|pid:none) Xenopus tropicalis finished cDNA, ...   299   2e-79
AK223558_1(AK223558|pid:none) Homo sapiens mRNA for adaptor-rela...   298   3e-79
CP000593_249(CP000593|pid:none) Ostreococcus lucimarinus CCE9901...   298   4e-79
(P17426) RecName: Full=AP-2 complex subunit alpha-1; AltName: Fu...   297   5e-79
BC014214_1(BC014214|pid:none) Homo sapiens adaptor-related prote...   297   6e-79
AF289221_2(AF289221|pid:none) Homo sapiens alpha-adaptin A relat...   297   6e-79
CR857879_1(CR857879|pid:none) Pongo abelii mRNA; cDNA DKFZp459P0...   294   5e-78
AE014134_101(AE014134|pid:none) Drosophila melanogaster chromoso...   289   2e-76
AK001986_1(AK001986|pid:none) Homo sapiens cDNA FLJ11124 fis, cl...   267   5e-70
AB004535_18(AB004535|pid:none) Schizosaccharomyces pombe 42.8 kb...   256   1e-66
AB261058_1(AB261058|pid:none) Entamoeba histolytica gene for alp...   243   1e-62
AB263748_49(AB263748|pid:none) Ipomoea trifida DNA, self-incompa...   221   6e-56
AM494944_5(AM494944|pid:none) Leishmania braziliensis chromosome...   220   7e-56
AY170465_1(AY170465|pid:none) Leishmania mexicana mexicana alpha...   216   2e-54
AY812014_1(AY812014|pid:none) Schistosoma japonicum SJCHGC04224 ...   196   2e-48
CR382138_1212(CR382138|pid:none) Debaryomyces hansenii chromosom...   184   5e-45
FM992688_697(FM992688|pid:none) Candida dubliniensis CD36 chromo...   182   2e-44
(Q99128) RecName: Full=AP-1 complex subunit gamma-1; AltName: Fu...   180   1e-43
S49876(S49876) gamma-adaptin - smut fungus (Ustilago maydis)  &Z...   179   1e-43
(Q8I8U2) RecName: Full=AP-1 complex subunit gamma; AltName: Full...   179   2e-43
CP000500_55(CP000500|pid:none) Pichia stipitis CBS 6054 chromoso...   177   9e-43
CR954213_269(CR954213|pid:none) Ostreococcus tauri strain OTTH05...   177   9e-43
AM269955_67(AM269955|pid:none) Aspergillus niger contig An01c008...   174   6e-42
AC005966_12(AC005966|pid:none) Arabidopsis thaliana chromosome 1...   172   3e-41
AM920428_179(AM920428|pid:none) Penicillium chrysogenum Wisconsi...   172   3e-41
AJ133777_1(AJ133777|pid:none) Arabidopsis thaliana mRNA for gamm...   171   5e-41
BT004307_1(BT004307|pid:none) Arabidopsis thaliana clone RAFL16-...   171   5e-41
AE017341_195(AE017341|pid:none) Cryptococcus neoformans var. neo...   170   1e-40
(Q5R5M2) RecName: Full=AP-1 complex subunit gamma-1; AltName: Fu...   169   2e-40
BC045070_1(BC045070|pid:none) Xenopus laevis similar to adaptor ...   169   2e-40
BC073198_1(BC073198|pid:none) Xenopus laevis similar to adaptor ...   169   2e-40
AC002423_7(AC002423|pid:none) Genomic sequence for Arabidopsis t...   169   2e-40
AB261056_1(AB261056|pid:none) Entamoeba histolytica gene for gam...   169   3e-40
(O75843) RecName: Full=AP-1 complex subunit gamma-like 2; AltNam...   169   3e-40
(O43747) RecName: Full=AP-1 complex subunit gamma-1; AltName: Fu...   168   4e-40
(P22892) RecName: Full=AP-1 complex subunit gamma-1; AltName: Fu...   168   4e-40
EU956640_1(EU956640|pid:none) Zea mays clone 1568667 AP-1 comple...   167   6e-40
BC047823_1(BC047823|pid:none) Danio rerio adaptor-related protei...   167   1e-39
AK036387_1(AK036387|pid:none) Mus musculus adult male bone cDNA,...   166   1e-39
AK145821_1(AK145821|pid:none) Mus musculus 14 days pregnant adul...   166   1e-39
Y12226_1(Y12226|pid:none) H.sapiens mRNA for gamma-adaptin.           166   1e-39
BC036283_1(BC036283|pid:none) Homo sapiens adaptor-related prote...   166   2e-39
CR382128_855(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...   166   2e-39
BT025356_1(BT025356|pid:none) Bos taurus adaptor-related protein...   163   1e-38
AP008208_2858(AP008208|pid:none) Oryza sativa (japonica cultivar...   163   1e-38
AC069158_21(AC069158|pid:none) Genomic Sequence for Oryza sativa...   163   1e-38
AK151844_1(AK151844|pid:none) Mus musculus bone marrow macrophag...   162   2e-38
AK147177_1(AK147177|pid:none) Mus musculus 16 days embryo kidney...   162   2e-38
AF486293_1(AF486293|pid:none) Giardia intestinalis alpha adaptin...   162   3e-38
CP001330_100(CP001330|pid:none) Micromonas sp. RCC299 chromosome...   162   3e-38
FN392320_526(FN392320|pid:none) Pichia pastoris GS115 chromosome...   161   5e-38
AE014298_1328(AE014298|pid:none) Drosophila melanogaster chromos...   159   2e-37
BT023757_1(BT023757|pid:none) Drosophila melanogaster RE56180 fu...   159   2e-37
CR382134_483(CR382134|pid:none) Debaryomyces hansenii strain CBS...   159   2e-37
AK075497_1(AK075497|pid:none) Homo sapiens cDNA PSEC0195 fis, cl...   159   2e-37
CP000497_69(CP000497|pid:none) Pichia stipitis CBS 6054 chromoso...   154   7e-36
CP001141_67(CP001141|pid:none) Phaeodactylum tricornutum CCAP 10...   153   1e-35
FN392320_570(FN392320|pid:none) Pichia pastoris GS115 chromosome...   152   2e-35
FM992695_250(FM992695|pid:none) Candida dubliniensis CD36 chromo...   147   8e-34
AC174363_21(AC174363|pid:none) Medicago truncatula clone mth2-41...   146   1e-33
AY136369_1(AY136369|pid:none) Arabidopsis thaliana putative epsi...   144   7e-33
AB030653_1(AB030653|pid:none) Homo sapiens mRNA for epsilon-adap...   143   2e-32
BC135628_1(BC135628|pid:none) Xenopus tropicalis adaptor-related...   142   2e-32
(Q9UPM8) RecName: Full=AP-4 complex subunit epsilon-1; AltName: ...   141   6e-32
AL928590_2(AL928590|pid:none) Mouse DNA sequence from clone RP23...   141   6e-32
AK039257_1(AK039257|pid:none) Mus musculus adult male spinal cor...   141   6e-32
(Q80V94) RecName: Full=AP-4 complex subunit epsilon-1; AltName: ...   140   8e-32
AE014187_527(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...   139   2e-31
BT067720_1(BT067720|pid:none) Zea mays full-length cDNA clone ZM...   139   2e-31
AC006942_1(AC006942|pid:none) Homo sapiens chromosome 19, cosmid...   138   4e-31
CU928169_623(CU928169|pid:none) Kluyveromyces thermotolerans str...   138   4e-31
CR749604_1(CR749604|pid:none) Homo sapiens mRNA; cDNA DKFZp686L1...   137   6e-31
CP000584_399(CP000584|pid:none) Ostreococcus lucimarinus CCE9901...   137   1e-30
AK297290_1(AK297290|pid:none) Homo sapiens cDNA FLJ60689 complet...   136   1e-30
AC074360_5(AC074360|pid:none) Arabidopsis thaliana chromosome 1 ...   135   3e-30
AK293763_1(AK293763|pid:none) Homo sapiens cDNA FLJ57955 complet...   131   5e-29
AM494957_360(AM494957|pid:none) Leishmania braziliensis chromoso...   130   8e-29
CR382125_286(CR382125|pid:none) Kluyveromyces lactis strain NRRL...   130   1e-28
CR382122_502(CR382122|pid:none) Kluyveromyces lactis strain NRRL...   130   1e-28
AC084047_34(AC084047|pid:none) Trypanosoma brucei chromosome 6 c...   128   5e-28
CT005271_415(CT005271|pid:none) Leishmania major strain Friedlin...   125   3e-27
(Q54VE0) RecName: Full=AP-4 complex subunit epsilon; AltName: Fu...   124   1e-26
AM502252_354(AM502252|pid:none) Leishmania infantum chromosome 34.    123   2e-26
CU928178_551(CU928178|pid:none) Zygosaccharomyces rouxii strain ...   120   1e-25
EU020995_1(EU020995|pid:none) Prodoxus quinquepunctellus clone P...   119   2e-25
EU020993_1(EU020993|pid:none) Antheraea paukstadtorum clone Apau...   119   2e-25
EU020994_1(EU020994|pid:none) Cydia pomonella clone Cpo63f2 puta...   119   3e-25
CR380952_173(CR380952|pid:none) Candida glabrata strain CBS138 c...   118   5e-25
AF016671_5(AF016671|pid:none) Caenorhabditis elegans cosmid W09G...   118   5e-25
EU481389_1(EU481389|pid:none) Caenorhabditis remanei strain PB20...   117   1e-24
EU020980_1(EU020980|pid:none) Forficula auricularia clone Fau63f...   117   1e-24
EU020990_1(EU020990|pid:none) Thulinius stephaniae clone Thul63f...   114   6e-24
EU020981_1(EU020981|pid:none) Lithobius forticatus clone Lfo63f2...   114   6e-24
EU020985_1(EU020985|pid:none) Narceus americanus clone Nam63f2 p...   114   8e-24
BC005142_1(BC005142|pid:none) Homo sapiens adaptor-related prote...   114   1e-23
AK141789_1(AK141789|pid:none) Mus musculus 9 days embryo whole b...   114   1e-23
AK155518_1(AK155518|pid:none) Mus musculus NOD-derived CD11c +ve...   114   1e-23
AB384738_1(AB384738|pid:none) Synthetic construct DNA, clone: pF...   114   1e-23
(O54774) RecName: Full=AP-3 complex subunit delta-1; AltName: Fu...   114   1e-23
(O14617) RecName: Full=AP-3 complex subunit delta-1; AltName: Fu...   114   1e-23
BC037477_1(BC037477|pid:none) Mus musculus adaptor-related prote...   114   1e-23
BC154680_1(BC154680|pid:none) Xenopus tropicalis adaptor-related...   113   1e-23
BC080909_1(BC080909|pid:none) Xenopus tropicalis adaptor-related...   113   1e-23
EU020989_1(EU020989|pid:none) Speleonectes tulumensis clone Stu6...   113   2e-23
BC010065_1(BC010065|pid:none) Homo sapiens adaptor-related prote...   112   2e-23
AB261057_1(AB261057|pid:none) Entamoeba histolytica gene for gam...   111   5e-23
AB015979_1(AB015979|pid:none) Bos taurus mRNA for adaptor relate...   111   5e-23
EU020982_1(EU020982|pid:none) Limulus polyphemus clone Lpo63f2 p...   111   6e-23
EU020986_1(EU020986|pid:none) Nebalia hessleri clone Nhe63f2 put...   110   1e-22
AF002164_1(AF002164|pid:none) Drosophila melanogaster AP-3 delta...   109   2e-22
BT011188_1(BT011188|pid:none) Drosophila melanogaster RE06749 fu...   109   2e-22
AE014298_2035(AE014298|pid:none) Drosophila melanogaster chromos...   109   2e-22
F88101(F88101)protein W09G10.4 [imported] - Caenorhabditis elegans    109   2e-22
CR940353_184(CR940353|pid:none) Theileria annulata strain Ankara...   108   3e-22
AC002423_12(AC002423|pid:none) Genomic sequence for Arabidopsis ...   108   3e-22
AY810338_1(AY810338|pid:none) Schistosoma japonicum SJCHGC05448 ...   105   3e-21
AC005545_3(AC005545|pid:none) Homo sapiens chromosome 19, cosmid...   103   1e-20
CR382132_5(CR382132|pid:none) Yarrowia lipolytica strain CLIB122...   102   3e-20
CR382139_65(CR382139|pid:none) Debaryomyces hansenii strain CBS7...   101   5e-20
EU020984_1(EU020984|pid:none) Mastigoproctus giganteus clone Mga...    99   3e-19
AJ224112_1(AJ224112|pid:none) Homo sapiens gamma-adaptin gene, e...    99   3e-19
EU020987_1(EU020987|pid:none) Cypridopsis vidua clone Ost63f2 pu...    99   4e-19
AB261060_1(AB261060|pid:none) Entamoeba histolytica gene for alp...    97   1e-18
AC073555_7(AC073555|pid:none) Arabidopsis thaliana chromosome 1 ...    96   2e-18
FN392319_1495(FN392319|pid:none) Pichia pastoris GS115 chromosom...    96   4e-18
AK294546_1(AK294546|pid:none) Homo sapiens cDNA FLJ52990 complet...    95   5e-18
AC135462_22(AC135462|pid:none) Medicago truncatula clone mth2-35...    94   8e-18
FM992690_247(FM992690|pid:none) Candida dubliniensis CD36 chromo...    93   2e-17
AC159455_21(AC159455|pid:none) Trypanosoma brucei chromosome 5 c...    90   2e-16
FN357358_10(FN357358|pid:none) Schistosoma mansoni genome sequen...    90   2e-16
AM494945_9(AM494945|pid:none) Leishmania braziliensis chromosome...    89   3e-16
AP007160_1(AP007160|pid:none) Aspergillus oryzae RIB40 genomic D...    88   8e-16
AM920435_898(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    87   1e-15
AK293233_1(AK293233|pid:none) Homo sapiens cDNA FLJ55047 complet...    85   5e-15
CT005247_9(CT005247|pid:none) Leishmania major strain Friedlin, ...    84   1e-14
AM502226_9(AM502226|pid:none) Leishmania infantum chromosome 8.        82   3e-14
BC149792_1(BC149792|pid:none) Bos taurus adaptor-related protein...    81   7e-14
AF130042_1(AF130042|pid:none) Homo sapiens clone FLB0124 PRO0039...    80   1e-13
CU928180_193(CU928180|pid:none) Kluyveromyces thermotolerans str...    80   2e-13
AF486294_1(AF486294|pid:none) Giardia intestinalis gamma adaptin...    75   5e-12
U91930_1(U91930|pid:none) Homo sapiens AP-3 complex delta subuni...    73   3e-11
AB173339_1(AB173339|pid:none) Macaca fascicularis brain cDNA clo...    70   2e-10
AK155825_1(AK155825|pid:none) Mus musculus B6-derived CD11 +ve d...    70   2e-10
CR940353_83(CR940353|pid:none) Theileria annulata strain Ankara ...    70   2e-10
CR954204_430(CR954204|pid:none) Ostreococcus tauri strain OTTH05...    69   4e-10
CR760468_1(CR760468|pid:none) Xenopus tropicalis finished cDNA, ...    64   9e-09
BX538351_19(BX538351|pid:none) Cryptosporidium parvum chromosome...    61   1e-07
AB261061_1(AB261061|pid:none) Entamoeba histolytica gene for del...    60   1e-07
AK155892_1(AK155892|pid:none) Mus musculus B6-derived CD11 +ve d...    60   2e-07
AK034140_1(AK034140|pid:none) Mus musculus adult male diencephal...    59   4e-07
(P52303) RecName: Full=AP-1 complex subunit beta-1; AltName: Ful...    59   4e-07
AK160042_1(AK160042|pid:none) Mus musculus osteoclast-like cell ...    59   4e-07
AB462935_1(AB462935|pid:none) Synthetic construct DNA, clone: pF...    59   5e-07
(Q10567) RecName: Full=AP-1 complex subunit beta-1; AltName: Ful...    59   5e-07
BC046242_1(BC046242|pid:none) Homo sapiens adaptor-related prote...    59   5e-07
AX886860_1(AX886860|pid:none) Sequence 2723 from Patent EP1033401.     59   5e-07
(O35643) RecName: Full=AP-1 complex subunit beta-1; AltName: Ful...    59   5e-07
AE017345_99(AE017345|pid:none) Cryptococcus neoformans var. neof...    58   6e-07
(Q54R84) RecName: Full=AP-4 complex subunit beta; AltName: Full=...    57   1e-06
BC166197_1(BC166197|pid:none) Xenopus tropicalis hypothetical pr...    57   1e-06
AM910992_42(AM910992|pid:none) Plasmodium knowlesi strain H chro...    57   2e-06
AL929354_39(AL929354|pid:none) Plasmodium falciparum strain 3D7,...    56   3e-06
AC024202_3(AC024202|pid:none) Caenorhabditis elegans cosmid Y71H...    55   5e-06
AC024202_5(AC024202|pid:none) Caenorhabditis elegans cosmid Y71H...    55   5e-06
(P62944) RecName: Full=AP-2 complex subunit beta-1; AltName: Ful...    55   7e-06
CR860139_1(CR860139|pid:none) Pongo abelii mRNA; cDNA DKFZp469O1...    55   7e-06
(Q08DS7) RecName: Full=AP-1 complex subunit beta-1; AltName: Ful...    54   9e-06
(P63009) RecName: Full=AP-2 complex subunit beta-1; AltName: Ful...    54   9e-06
BC049138_1(BC049138|pid:none) Danio rerio adaptor-related protei...    54   1e-05
BC043793_1(BC043793|pid:none) Xenopus laevis adaptor-related pro...    54   1e-05
FM992690_232(FM992690|pid:none) Candida dubliniensis CD36 chromo...    54   1e-05
BC063350_1(BC063350|pid:none) Xenopus tropicalis adaptor-related...    54   2e-05
CR749392_1(CR749392|pid:none) Homo sapiens mRNA; cDNA DKFZp781K0...    53   3e-05
AP008209_1493(AP008209|pid:none) Oryza sativa (japonica cultivar...    53   3e-05
FN392319_782(FN392319|pid:none) Pichia pastoris GS115 chromosome...    53   3e-05
EF197847_20(EF197847|pid:none) Capsella rubella miR319a microRNA...    51   8e-05
AK227093_1(AK227093|pid:none) Arabidopsis thaliana mRNA for beta...    50   1e-04
AF216386_1(AF216386|pid:none) Arabidopsis thaliana beta-adaptin-...    50   1e-04
AY065000_1(AY065000|pid:none) Arabidopsis thaliana AT4g23460/F16...    50   2e-04
AL031326_16(AL031326|pid:none) Arabidopsis thaliana DNA chromoso...    50   2e-04
AE017346_476(AE017346|pid:none) Cryptococcus neoformans var. neo...    49   4e-04
AL645522_7(AL645522|pid:none) Mouse DNA sequence from clone RP23...    48   7e-04
AL645522_8(AL645522|pid:none) Mouse DNA sequence from clone RP23...    48   7e-04
BC053128_1(BC053128|pid:none) Danio rerio adaptor-related protei...    48   7e-04
CR380950_86(CR380950|pid:none) Candida glabrata strain CBS138 ch...    48   7e-04
AF049527_1(AF049527|pid:none) Homo sapiens alpha-adaptin C mRNA,...    47   0.001
AY341427_1(AY341427|pid:none) Homo sapiens beta adaptin subunit ...    47   0.001
CR940348_659(CR940348|pid:none) Theileria annulata strain Ankara...    47   0.002
AB261062_1(AB261062|pid:none) Entamoeba histolytica gene for eps...    47   0.002
FN318160_1(FN318160|pid:none) Schistosoma japonicum isolate Anhu...    44   0.010
AY811710_1(AY811710|pid:none) Schistosoma japonicum SJCHGC04278 ...    44   0.010
CU210953_4(CU210953|pid:none) Mouse DNA sequence from clone DN-3...    44   0.012
CU210953_5(CU210953|pid:none) Mouse DNA sequence from clone DN-3...    44   0.012
BC056200_1(BC056200|pid:none) Mus musculus adaptor-related prote...    44   0.016
AB261041_1(AB261041|pid:none) Entamoeba histolytica gene for bet...    43   0.021
BC054092_1(BC054092|pid:none) Mus musculus adaptor-related prote...    43   0.021
B35553(B35553) beta-adaptin - bovine (fragment)  &M34177_1(M3417...    42   0.036
AM437344_1(AM437344|pid:none) Vitis vinifera contig VV78X175554....    41   0.081
CP001323_755(CP001323|pid:none) Micromonas sp. RCC299 chromosome...    41   0.081
AB385090_1(AB385090|pid:none) Synthetic construct DNA, clone: pF...    40   0.14
(P36000) RecName: Full=AP-1 complex subunit beta-1; AltName: Ful...    40   0.14
AB209817_1(AB209817|pid:none) Homo sapiens mRNA for adaptor-rela...    40   0.14
AK314641_1(AK314641|pid:none) Homo sapiens cDNA, FLJ95484, highl...    40   0.14
EU971310_1(EU971310|pid:none) Zea mays clone 361891 adaptin N te...    39   0.31
CR954213_270(CR954213|pid:none) Ostreococcus tauri strain OTTH05...    39   0.40
AM910984_149(AM910984|pid:none) Plasmodium knowlesi strain H chr...    38   0.69
EU447196_1(EU447196|pid:none) Helicobacter pylori strain B140 no...    37   1.2
AM463501_1(AM463501|pid:none) Vitis vinifera contig VV78X085385....    37   1.5
AC116960_66(AC116960|pid:none) Dictyostelium discoideum chromoso...    37   1.5
AC135206_1(AC135206|pid:none) Oryza sativa (japonica cultivar-gr...    36   3.4
AB172937_1(AB172937|pid:none) Macaca fascicularis brain cDNA clo...    35   5.8
FN357316_19(FN357316|pid:none) Schistosoma mansoni genome sequen...    35   7.6
CP000591_161(CP000591|pid:none) Ostreococcus lucimarinus CCE9901...    35   7.6
AL954693_2(AL954693|pid:none) Zebrafish DNA sequence from clone ...    35   7.6
BC168513_1(BC168513|pid:none) Danio rerio cDNA clone IMAGE:69620...    35   7.6
AE016818_395(AE016818|pid:none) Ashbya gossypii (= Eremothecium ...    34   9.9
AB2239(AB2239) hypothetical protein all3465 [imported] - Nostoc ...    34   9.9
AY177423_1(AY177423|pid:none) Trypanosoma cruzi B3 adaptin-like ...    34   9.9

>(Q86KI1) RecName: Full=AP-2 complex subunit alpha-2; AltName:
            Full=Adapter-related protein complex 2 alpha-2 subunit;
            AltName: Full=Adaptor protein complex AP-2 subunit
            alpha-2; AltName: Full=Alpha2-adaptin; AltName:
            Full=Plasma membrane adaptor HA2/AP2 adaptin alpha C
            subunit; AltName: Full=Alpha-adaptin C; AltName:
            Full=Clathrin assembly protein complex 2 alpha-C large
            chain; AltName: Full=100 kDa coated vesicle protein C;
            &AC116330_36(AC116330|pid:none)
          Length = 989

 Score =  759 bits (1961), Expect = 0.0
 Identities = 388/389 (99%), Positives = 388/389 (99%)
 Frame = +2

Query: 110  MSMNVTNPNIAKTSMRGLTNFISDLRNSPSKENEEKRVTKEMAHIRKEFKENKNIDGYQR 289
            MSMNVTNPNIAKTSMRGLTNFISDLRNSPSKENEEKRVTKEMAHIRKEFKENKNIDGYQR
Sbjct: 1    MSMNVTNPNIAKTSMRGLTNFISDLRNSPSKENEEKRVTKEMAHIRKEFKENKNIDGYQR 60

Query: 290  RKYVCKLVYMYMLGYELDFGHMEAVTLLSSTKFSEKQIGYIALGILLNEQHEMLPLIINS 469
            RKYVCKLVYMYMLGYELDFGHMEAVTLLSSTKFSEKQIGYIALGILLNEQHEMLPLIINS
Sbjct: 61   RKYVCKLVYMYMLGYELDFGHMEAVTLLSSTKFSEKQIGYIALGILLNEQHEMLPLIINS 120

Query: 470  FKEDLLARSDYFQSLALAAICNIGGKEVAEFLSPLIQKLLIANTSSPMVKKRCALAILRM 649
            FKEDLLARSDYFQSLALAAICNIGGKEVAEFLSPLIQKLLIANTSSPMVKKRCALAILRM
Sbjct: 121  FKEDLLARSDYFQSLALAAICNIGGKEVAEFLSPLIQKLLIANTSSPMVKKRCALAILRM 180

Query: 650  NRKHIGLVTPDSWVERLVSVLDEPDFGVLTSLMSLLIELASENPIGWEPAIPKVIHLLKK 829
            NRKHIGLVTPDSWVERLVSVLDEPDFGVLTSLMSLLIELASENPIGWEPAIPKVIHLLKK
Sbjct: 181  NRKHIGLVTPDSWVERLVSVLDEPDFGVLTSLMSLLIELASENPIGWEPAIPKVIHLLKK 240

Query: 830  IIINKEFPKEYVYYHVTCPWLQVKLLKFLRYFPASDDSQGGKVLGEILTAVFAQSESAKA 1009
            IIINKEFPKEYVYYHVTCPWLQVKLLKFLRYFPA DDSQGGKVLGEILTAVFAQSESAKA
Sbjct: 241  IIINKEFPKEYVYYHVTCPWLQVKLLKFLRYFPAPDDSQGGKVLGEILTAVFAQSESAKA 300

Query: 1010 GTVNHKNSLNAVLFEAINLIIHLDNDPVLLKQTSLLLGRFITVKETNIRYLGLEAMSHFA 1189
            GTVNHKNSLNAVLFEAINLIIHLDNDPVLLKQTSLLLGRFITVKETNIRYLGLEAMSHFA
Sbjct: 301  GTVNHKNSLNAVLFEAINLIIHLDNDPVLLKQTSLLLGRFITVKETNIRYLGLEAMSHFA 360

Query: 1190 SLSNETSIMIKKYQDTVLLSLKDSDISIR 1276
            SLSNETSIMIKKYQDTVLLSLKDSDISIR
Sbjct: 361  SLSNETSIMIKKYQDTVLLSLKDSDISIR 389

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,737,571,435
Number of extensions: 32607197
Number of successful extensions: 80839
Number of sequences better than 10.0: 236
Number of HSP's gapped: 80453
Number of HSP's successfully gapped: 242
Length of query: 425
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 294
Effective length of database: 627,191,635
Effective search space: 184394340690
Effective search space used: 184394340690
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.84  gvh: 0.40  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.04
 nuc: 0.11  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: mitochondrial
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for Contig-U15288-1 is cyt
VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 5
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 3
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0