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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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Contig-U15264-1
Contig ID Contig-U15264-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15264-1 (Contig-U15264-1Q) /CSM_Contig/Contig-U15264-1Q.Seq.d
CTTTAAAATTAGATCATATTTATAAGAAAATTGAAAAAGATTTAGAAAAA
GAAACTGTAGCAACAAAGGCTTCAGAAGGTACAAATGAAATAGATATAAC
AACAGAAAAACCTAAAAGAGGTAGACCAAAGGGTTCAAAAAATAAACAAA
AACCATCGCAATCAAAAGAAACAACATCACCACTCGAATCAAAACCAATT
GAAACAGAATCAACAACAACAACAACAACAACAACAAGTACAACAATTAC
AACAACAAGTACAAAAAGTACAACAATTGACAGCTGGTACTAATTTAGGT
GGTAATAGTTTAAATTCAAGTGGTAGTATTTATAATAATAGCGGCGATAA
AAAATCATCACTACCACCATTACCAAATCCAAATAACCTTAGTAATAATT
ATGATAGTGATCATCTTACAAAGAATAAAAATTTATTAAAAGTTTCAACA
CCAGATGGCAATAGTTCCTCTGCTCCTGGTTCACCAATTTTATCTCCTCA
ATCAATGAATTCAGTTTTCCCACCAAACGCTCCTTTATCACCTGCTCTTT
ATCCTTCAAATTTAAGTAATTCAACATTGGCCCAAAGAGTTACATTGGAT
AAATAAATTATAAATAATGTATAAAATCATTCATCTCTTAT
Gap no gap
Contig length 641
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 4310785
End point 4311273
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U15264
List of clone(s) 

est1=VSD507F,1,641
est2=VSD507Z,1,632
Translated Amino Acid sequence 
l*n*iifirklkki*kkkl*qqrlqkvqmk*i*QQKNLKEVDQRVQKINKNHRNQKKQHH
HSNQNQLKQNQQQQQQQQQVQQLQQQVQKVQQLTAGTNLGGNSLNSSGSIYNNSGDKKSS
LPPLPNPNNLSNNYDSDHLTKNKNLLKVSTPDGNSSSAPGSPILSPQSMNSVFPPNAPLS
PALYPSNLSNSTLAQRVTLDK*iinnv*nhssl
Translated Amino Acid sequence (All Frames) 
Frame A:
l*n*iifirklkki*kkkl*qqrlqkvqmk*i*QQKNLKEVDQRVQKINKNHRNQKKQHH
HSNQNQLKQNQQQQQQQQQVQQLQQQVQKVQQLTAGTNLGGNSLNSSGSIYNNSGDKKSS
LPPLPNPNNLSNNYDSDHLTKNKNLLKVSTPDGNSSSAPGSPILSPQSMNSVFPPNAPLS
PALYPSNLSNSTLAQRVTLDK*iinnv*nhssl


Frame B:
fkirsyl*en*krfrkrncsnkgfrryk*nrynnrkt*kr*tkgfkk*tktiaikrnnit
triktn*nrinnnnnnnnkynnynnkykkynn*qlvli*vviv*iqvvvfiiiaaiknhh
yhhyqiqitlviimiviilqrikiy*kfqhqmaivplllvhqfyllnq*iqfshqtllyh
llfilqi*viqhwpkelhwinkl*imykiihll


Frame C:
lkldhiykkiekdleketvatkasegtneidittekpkrgrpkgsknkqkpsqskettsp
leskpietesttttttttsttitttstksttidswy*frw**fkfkw*yl***rr*kiit
ttitksk*p***l***ssyke*kfiksfntrwq*flcswftnfissinefsfptkrsfit
cslsfkfk*fnigpksyig*inyk*ciksfisy
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15264-1 (Contig-U15264-1Q)
/CSM_Contig/Contig-U15264-1Q.Seq.d
         (641 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15264-1 (Contig-U15264-1Q) /CSM_Contig/Conti...   724  0.0
Contig-U11195-1 (Contig-U11195-1Q) /CSM_Contig/Conti...   690  0.0
Contig-U16205-1 (Contig-U16205-1Q) /CSM_Contig/Conti...   190  2e-48
Contig-U15924-1 (Contig-U15924-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U14508-1 (Contig-U14508-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U12759-1 (Contig-U12759-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U12566-1 (Contig-U12566-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U11488-1 (Contig-U11488-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U11147-1 (Contig-U11147-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U03803-1 (Contig-U03803-1Q) /CSM_Contig/Conti...    38  0.016

>Contig-U15264-1 (Contig-U15264-1Q) /CSM_Contig/Contig-U15264-1Q.Seq.d
          Length = 641

 Score =  724 bits (365), Expect = 0.0
 Identities = 365/365 (100%)
 Strand = Plus / Plus

                                                                       
Query: 277 ttgacagctggtactaatttaggtggtaatagtttaaattcaagtggtagtatttataat 336
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ttgacagctggtactaatttaggtggtaatagtttaaattcaagtggtagtatttataat 336

                                                                       
Query: 337 aatagcggcgataaaaaatcatcactaccaccattaccaaatccaaataaccttagtaat 396
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aatagcggcgataaaaaatcatcactaccaccattaccaaatccaaataaccttagtaat 396

                                                                       
Query: 397 aattatgatagtgatcatcttacaaagaataaaaatttattaaaagtttcaacaccagat 456
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aattatgatagtgatcatcttacaaagaataaaaatttattaaaagtttcaacaccagat 456

                                                                       
Query: 457 ggcaatagttcctctgctcctggttcaccaattttatctcctcaatcaatgaattcagtt 516
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ggcaatagttcctctgctcctggttcaccaattttatctcctcaatcaatgaattcagtt 516

                                                                       
Query: 517 ttcccaccaaacgctcctttatcacctgctctttatccttcaaatttaagtaattcaaca 576
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttcccaccaaacgctcctttatcacctgctctttatccttcaaatttaagtaattcaaca 576

                                                                       
Query: 577 ttggcccaaagagttacattggataaataaattataaataatgtataaaatcattcatct 636
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ttggcccaaagagttacattggataaataaattataaataatgtataaaatcattcatct 636

                
Query: 637 cttat 641
           |||||
Sbjct: 637 cttat 641


 Score =  190 bits (96), Expect = 2e-48
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ctttaaaattagatcatatttataagaaaattgaaaaagatttagaaaaagaaactgtag 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ctttaaaattagatcatatttataagaaaattgaaaaagatttagaaaaagaaactgtag 60

                                              
Query: 61 caacaaaggcttcagaaggtacaaatgaaatagata 96
          ||||||||||||||||||||||||||||||||||||
Sbjct: 61 caacaaaggcttcagaaggtacaaatgaaatagata 96


 Score =  115 bits (58), Expect = 9e-26
 Identities = 58/58 (100%)
 Strand = Plus / Plus

                                                                     
Query: 153 ccatcgcaatcaaaagaaacaacatcaccactcgaatcaaaaccaattgaaacagaat 210
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 ccatcgcaatcaaaagaaacaacatcaccactcgaatcaaaaccaattgaaacagaat 210


>Contig-U11195-1 (Contig-U11195-1Q) /CSM_Contig/Contig-U11195-1Q.Seq.d
          Length = 2868

 Score =  690 bits (348), Expect = 0.0
 Identities = 355/356 (99%), Gaps = 1/356 (0%)
 Strand = Plus / Plus

                                                                        
Query: 277  ttgacagctggtactaatttaggtggtaatagtttaaattcaagtggtagtatttataat 336
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2510 ttgacagctggtactaatttaggtggtaatagtttaaattcaagtggtagtatttataat 2569

                                                                        
Query: 337  aatagcggcgataaaaaatcatcactaccaccattaccaaatccaaataaccttagtaat 396
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2570 aatagcggcgataaaaaatcatcactaccaccattaccaaatccaaataaccttagtaat 2629

                                                                        
Query: 397  aattatgatagtgatcatcttacaaagaataaaaatttattaaaagtttcaacaccagat 456
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2630 aattatgatagtgatcatcttacaaagaataaaaatttattaaaagtttcaacaccagat 2689

                                                                        
Query: 457  ggcaatagttcctctgctcctggttcaccaattttatctcctcaatcaatgaattcagtt 516
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2690 ggcaatagttcctctgctcctggttcaccaattttatctcctcaatcaatgaattcagtt 2749

                                                                        
Query: 517  ttcccaccaaacgctcctttatcacctgctctttatccttcaaatttaagtaattcaaca 576
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2750 ttcccaccaaacgctcctttatcacctgctctttatccttcaaatttaagtaattcaaca 2809

                                                                    
Query: 577  ttggcccaaagagttacattggataaataaattataaataatgtataaaatcattc 632
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2810 ttggcccaaagagttaca-tggataaataaattataaataatgtataaaatcattc 2864


>Contig-U16205-1 (Contig-U16205-1Q) /CSM_Contig/Contig-U16205-1Q.Seq.d
          Length = 1351

 Score =  190 bits (96), Expect = 2e-48
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttaaaattagatcatatttataagaaaattgaaaaagatttagaaaaagaaactgtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ctttaaaattagatcatatttataagaaaattgaaaaagatttagaaaaagaaactgtag 349

                                               
Query: 61  caacaaaggcttcagaaggtacaaatgaaatagata 96
           ||||||||||||||||||||||||||||||||||||
Sbjct: 350 caacaaaggcttcagaaggtacaaatgaaatagata 385


 Score =  113 bits (57), Expect = 3e-25
 Identities = 57/57 (100%)
 Strand = Plus / Plus

                                                                    
Query: 153 ccatcgcaatcaaaagaaacaacatcaccactcgaatcaaaaccaattgaaacagaa 209
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ccatcgcaatcaaaagaaacaacatcaccactcgaatcaaaaccaattgaaacagaa 498


 Score = 63.9 bits (32), Expect = 3e-10
 Identities = 35/36 (97%)
 Strand = Plus / Plus

                                               
Query: 170 aacaacatcaccactcgaatcaaaaccaattgaaac 205
           ||||||| ||||||||||||||||||||||||||||
Sbjct: 519 aacaacaccaccactcgaatcaaaaccaattgaaac 554


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,800
Number of Sequences: 8402
Number of extensions: 15800
Number of successful extensions: 2098
Number of sequences better than 10.0: 267
length of query: 641
length of database: 8,075,542
effective HSP length: 16
effective length of query: 625
effective length of database: 7,941,110
effective search space: 4963193750
effective search space used: 4963193750
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.18
Homology vs DNA 
Query= Contig-U15264-1 (Contig-U15264-1Q) /CSM_Contig/Contig-U15264-1Q.Seq.d
         (641 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU264146) Dictyostelium discoideum vegetative cDNA clone:VS...   724   0.0    2
(AU264147) Dictyostelium discoideum vegetative cDNA clone:VS...   700   0.0    2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...   724   0.0    1
(BJ380008) Dictyostelium discoideum cDNA clone:ddc36o18, 3' ...   632   0.0    2
(BJ348584) Dictyostelium discoideum cDNA clone:dda33n16, 3' ...   632   0.0    2
(BJ356510) Dictyostelium discoideum cDNA clone:dda60e15, 3' ...   632   0.0    2
(BJ350235) Dictyostelium discoideum cDNA clone:dda39o02, 3' ...   541   0.0    3
(BJ355364) Dictyostelium discoideum cDNA clone:dda56g14, 3' ...   597   0.0    3
(BJ440336) Dictyostelium discoideum cDNA clone:ddv43j11, 3' ...   597   0.0    3
(BJ354344) Dictyostelium discoideum cDNA clone:dda53g07, 3' ...   662   0.0    1
(BJ406320) Dictyostelium discoideum cDNA clone:dds34j23, 3' ...   609   0.0    2
(BJ403427) Dictyostelium discoideum cDNA clone:dds25h06, 3' ...   597   0.0    4
(BJ408236) Dictyostelium discoideum cDNA clone:dds45l05, 3' ...   597   e-180  4
(BJ379052) Dictyostelium discoideum cDNA clone:ddc33j17, 3' ...   597   e-174  3
(BJ439306) Dictyostelium discoideum cDNA clone:ddv40e02, 3' ...   573   e-167  2
(BJ358229) Dictyostelium discoideum cDNA clone:dda43o04, 3' ...   573   e-163  2
(BJ354471) Dictyostelium discoideum cDNA clone:dda53a19, 3' ...   450   e-122  1
(BJ421928) Dictyostelium discoideum cDNA clone:ddv44e07, 5' ...   172   1e-38  1
(BJ369306) Dictyostelium discoideum cDNA clone:ddc50f03, 5' ...   172   1e-38  1
(BJ360741) Dictyostelium discoideum cDNA clone:ddc7k14, 5' e...   161   4e-35  1
(AF362369) Dictyostelium discoideum histidine kinase DhkG (d...    40   0.001  5
(EH014477) USDA-FP_187174 Lysiphlebus testaceipes adult whol...    40   0.049  2
(BA000016) Clostridium perfringens str. 13 DNA, complete gen...    38   0.054  13
(CP000409) Rickettsia canadensis str. McKiel, complete genome.     36   0.058  9
(EK293716) 1095462339435 Global-Ocean-Sampling_GS-31-01-01-1...    34   0.083  2
(EC825244) SME00005277 esmbsro2 Sawyeria marylandensis cDNA,...    36   0.084  2
(AC118788) Rattus norvegicus clone CH230-412J8, WORKING DRAF...    50   0.11   1
(AC109097) Rattus norvegicus clone CH230-223G15, *** SEQUENC...    50   0.11   1
(EK234105) 1095460193633 Global-Ocean-Sampling_GS-31-01-01-1...    38   0.25   2
(EK275917) 1095462276595 Global-Ocean-Sampling_GS-31-01-01-1...    44   0.28   2
(CU469583) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   0.30   4
(CU367882) H.melpomene DNA sequence from clone AEHM-11J7.          40   0.33   4
(CR847958) Zebrafish DNA sequence from clone CH211-203L23 in...    48   0.42   1
(CR383672) Zebrafish DNA sequence from clone DKEY-11P10 in l...    48   0.42   1
(BV222441) S233P682RA7.T0 LabradorRetriever Canis familiaris...    48   0.42   1
(ER752946) SB_BBc36-B12.F SB_BBc Sorghum bicolor genomic 5',...    48   0.42   1
(AM630512) Entamoeba dispar GSS, clone dispar56c06.p1k.            48   0.42   1
(DN269120) LIB30321_051_E01_SP6_1 LIB30321 Canis lupus famil...    48   0.42   1
(BI984301) fu11d05.x3 Campbell zebrafish ovary Danio rerio c...    48   0.42   1
(EX209577) SGT18b1_C06 library_18: tammar wallaby mammary ti...    48   0.42   1
(EX201054) SGT20r4_B09 normalized library from a mix of tamm...    48   0.42   1
(AE017244) Mycoplasma hyopneumoniae 7448, complete genome.         48   0.42   1
(AC128204) Rattus norvegicus clone CH230-424P12, *** SEQUENC...    46   0.49   5
(EK076672) 1092961048770 Global-Ocean-Sampling_GS-31-01-01-1...    38   0.85   2
(EF457753) Gossypium hirsutum retrotransposon putative copia...    34   0.88   2
(AC197186) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    34   0.92   2
(AC185509) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    34   0.92   2
(AC187405) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    34   0.92   2
(AC010044) Drosophila melanogaster clone RPCI98-7A8, *** SEQ...    36   0.94   4
(CG432249) Bg341-T3 Glomus intraradices Bgl II library (in p...    36   0.96   2
(EJ010957) 1095403706350 Global-Ocean-Sampling_GS-26-01-01-1...    30   1.1    3
(DX560109) GH_MBb0063E22f GH_MBb Gossypium hirsutum genomic ...    34   1.1    2
(DX529303) GH_MBb0056F18f GH_MBb Gossypium hirsutum genomic ...    34   1.1    2
(DX560149) GH_MBb0033G03f GH_MBb Gossypium hirsutum genomic ...    34   1.1    2
(DX540118) GH_MBb0026F12f GH_MBb Gossypium hirsutum genomic ...    34   1.1    2
(DX541585) GH_MBb0082O02f GH_MBb Gossypium hirsutum genomic ...    34   1.1    2
(DX520004) GH_MBb0052K23r GH_MBb Gossypium hirsutum genomic ...    34   1.1    2
(BH022343) GH_MBb0002M17r Gossypium hirsutum L. Gossypium hi...    34   1.2    2
(AC153852) Mus musculus 10 BAC RP23-136F8 (Roswell Park Canc...    34   1.2    5
(AL357793) Human DNA sequence from clone RP11-98G13 on chrom...    46   1.4    3
(AC131672) Mus musculus chromosome UNK clone RP23-314O21, co...    46   1.7    1
(AC124979) Mus musculus chromosome 3, clone RP24-117N14, com...    46   1.7    1
(AC124118) Mus musculus chromosome 3, clone RP23-152K14, com...    46   1.7    1
(AC197934) MACACA MULATTA BAC clone CH250-392N20 from chromo...    46   1.7    1
(AP006107) Lotus japonicus genomic DNA, chromosome 1, clone:...    46   1.7    1
(AC112407) Rattus norvegicus clone CH230-329J11, *** SEQUENC...    46   1.7    1
(CU972448) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.7    1
(CU862011) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.7    1
(AP007809) Lotus japonicus genomic DNA, chromosome 1, clone:...    46   1.7    1
(AP007797) Lotus japonicus genomic DNA, chromosome 1, clone:...    46   1.7    1
(ER719495) SB_BBc61-B16.R SB_BBc Sorghum bicolor genomic 3',...    46   1.7    1
(ER489482) 1093015319877 Global-Ocean-Sampling_GS-35-01-01-1...    46   1.7    1
(ED873306) OA_CBa0051C13.f OA_CBa Oryza australiensis genomi...    46   1.7    1
(DU411701) 1098415674287 CHORI-243 Ovis aries genomic clone ...    46   1.7    1
(DU179653) 1098553493657 CHORI-243 Ovis aries genomic clone ...    46   1.7    1
(AG322960) Mus musculus molossinus DNA, clone:MSMg01-109O06....    46   1.7    1
(BM162661) EST565184 PyBS Plasmodium yoelii yoelii cDNA clon...    46   1.7    1
(BM160622) EST563145 PyBS Plasmodium yoelii yoelii cDNA clon...    46   1.7    1
(BB980189) Plasmodium berghei str. ANKA cDNA clone: OK010356...    46   1.7    1
(BB976911) Plasmodium berghei str. ANKA cDNA clone: OK006851...    46   1.7    1
(BB976834) Plasmodium berghei str. ANKA cDNA clone: OK006766...    46   1.7    1
(BB973938) Plasmodium berghei str. ANKA cDNA clone: OK003727...    46   1.7    1
(FF060716) G1045P39FG3.T0 Aplysia californica Pooled Normali...    46   1.7    1
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    46   1.7    1
(CR382401) Plasmodium falciparum chromosome 6, complete sequ...    34   2.4    7
(AM054491) Isotricha prostoma EST, clone Ip04_C06.                 38   2.4    2
(BD428836) Method and nucleic acids for pharmacogenomic meth...    38   2.5    2
(AX348315) Sequence 10 from Patent WO0202806.                      38   2.5    2
(AC179805) Strongylocentrotus purpuratus clone R3-1014C9, WO...    34   2.8    3
(AC188784) Glycine tomentella clone gtt1-129o17, complete se...    34   3.0    6
(AC187770) MACACA MULATTA BAC clone CH250-85H12 from chromos...    32   3.3    2
(EK280599) 1095462293566 Global-Ocean-Sampling_GS-31-01-01-1...    38   3.3    2
(ER302801) 1092343718000 Global-Ocean-Sampling_GS-34-01-01-1...    42   3.4    2
(EK213968) 1095460110387 Global-Ocean-Sampling_GS-31-01-01-1...    40   3.5    2
(EJ521188) 1092955141521 Global-Ocean-Sampling_GS-29-01-01-1...    38   3.5    2
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4...    38   3.7    6
(CU062496) M.truncatula DNA sequence from clone MTH2-80K13 o...    38   3.7    4
(DX556378) GH_MBb0037P04r GH_MBb Gossypium hirsutum genomic ...    34   4.2    2
(AL035475) Plasmodium falciparum MAL4P2.                           36   4.4    5
(AM479894) Vitis vinifera contig VV78X201296.6, whole genome...    38   4.4    3

>(AU264146) Dictyostelium discoideum vegetative cDNA clone:VSD507,
           5' end single read.
          Length = 641

 Score =  724 bits (365), Expect(2) = 0.0
 Identities = 365/365 (100%)
 Strand = Plus / Plus


Query: 277 ttgacagctggtactaatttaggtggtaatagtttaaattcaagtggtagtatttataat 336
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ttgacagctggtactaatttaggtggtaatagtttaaattcaagtggtagtatttataat 336


Query: 337 aatagcggcgataaaaaatcatcactaccaccattaccaaatccaaataaccttagtaat 396
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aatagcggcgataaaaaatcatcactaccaccattaccaaatccaaataaccttagtaat 396


Query: 397 aattatgatagtgatcatcttacaaagaataaaaatttattaaaagtttcaacaccagat 456
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aattatgatagtgatcatcttacaaagaataaaaatttattaaaagtttcaacaccagat 456


Query: 457 ggcaatagttcctctgctcctggttcaccaattttatctcctcaatcaatgaattcagtt 516
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ggcaatagttcctctgctcctggttcaccaattttatctcctcaatcaatgaattcagtt 516


Query: 517 ttcccaccaaacgctcctttatcacctgctctttatccttcaaatttaagtaattcaaca 576
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttcccaccaaacgctcctttatcacctgctctttatccttcaaatttaagtaattcaaca 576


Query: 577 ttggcccaaagagttacattggataaataaattataaataatgtataaaatcattcatct 636
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ttggcccaaagagttacattggataaataaattataaataatgtataaaatcattcatct 636


Query: 637 cttat 641
           |||||
Sbjct: 637 cttat 641

 Score =  172 bits (87), Expect(2) = 0.0
 Identities = 87/87 (100%)
 Strand = Plus / Plus


Query: 1  ctttaaaattagatcatatttataagaaaattgaaaaagatttagaaaaagaaactgtag 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ctttaaaattagatcatatttataagaaaattgaaaaagatttagaaaaagaaactgtag 60


Query: 61 caacaaaggcttcagaaggtacaaatg 87
          |||||||||||||||||||||||||||
Sbjct: 61 caacaaaggcttcagaaggtacaaatg 87

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 668,807,411
Number of extensions: 44315700
Number of successful extensions: 3880168
Number of sequences better than 10.0: 203
Length of query: 641
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 617
Effective length of database: 100,704,341,533
Effective search space: 62134578725861
Effective search space used: 62134578725861
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.15
Homology vs Protein 
Query= Contig-U15264-1 (Contig-U15264-1Q) /CSM_Contig/Contig-U15264-1Q.Seq.d
         (641 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116957_116(AC116957|pid:none) Dictyostelium discoideum chromos...   139   7e-32
AP007154_173(AP007154|pid:none) Aspergillus oryzae RIB40 genomic...    37   0.37
S45043_1(S45043|pid:none) BR2.2=Balbiani ring {5' region, repeat...    37   0.49
BT066395_1(BT066395|pid:none) Zea mays full-length cDNA clone ZM...    37   0.64
AP007164_632(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    37   0.64
M23618_1(M23618|pid:none) Human HMG-Y protein isoform mRNA (HMGI...    37   0.64
AC150444_6(AC150444|pid:none) Medicago truncatula clone mth2-101...    30   1.4
AY890710_1(AY890710|pid:none) Synthetic construct Homo sapiens c...    35   1.4
AK025280_1(AK025280|pid:none) Homo sapiens cDNA: FLJ21627 fis, c...    35   1.4
AL133033_1(AL133033|pid:none) Homo sapiens mRNA; cDNA DKFZp586E0...    35   1.4
AB168476_1(AB168476|pid:none) Macaca fascicularis testis cDNA cl...    35   1.4
AL354740_3(AL354740|pid:none) Human DNA sequence from clone RP11...    35   1.4
DQ280380_1(DQ280380|pid:none) Bos taurus high-mobility group AT-...    35   1.4
AB028948_1(AB028948|pid:none) Homo sapiens mRNA for KIAA1025 pro...    35   1.4
(Q9QXP3) RecName: Full=High mobility group protein HMG-I/HMG-Y; ...    35   1.4
CR749332_1(CR749332|pid:none) Homo sapiens mRNA; cDNA DKFZp781D0...    35   1.4
(Q71F56) RecName: Full=Mediator of RNA polymerase II transcripti...    35   1.4
(P17096) RecName: Full=High mobility group protein HMG-I/HMG-Y; ...    35   1.4
AF193763_1(AF193763|pid:none) Cricetulus griseus high mobility g...    35   1.4
BC157445_1(BC157445|pid:none) Xenopus laevis hypothetical protei...    35   1.9
AF507966_1(AF507966|pid:none) Rattus norvegicus high mobility gr...    35   1.9
AF285780_1(AF285780|pid:none) Mus musculus high mobility group p...    35   1.9
AK169783_1(AK169783|pid:none) Mus musculus 2 days neonate thymus...    35   1.9
AF285780_2(AF285780|pid:none) Mus musculus high mobility group p...    35   1.9
BC124777_1(BC124777|pid:none) Danio rerio zgc:153948, mRNA (cDNA...    35   1.9
AF511040_1(AF511040|pid:none) Rattus norvegicus HMGA1b (Hmga1) m...    35   1.9
CU633455_40(CU633455|pid:none) Podospora anserina genomic DNA ch...    35   2.4
CP000683_315(CP000683|pid:none) Rickettsia massiliae MTU5, compl...    35   2.4
AK130027_1(AK130027|pid:none) Homo sapiens cDNA FLJ26517 fis, cl...    35   2.4
FM992688_584(FM992688|pid:none) Candida dubliniensis CD36 chromo...    34   3.2
EF146007_1(EF146007|pid:none) Populus trichocarpa clone WS0114_N...    34   3.2
(Q6JPI3) RecName: Full=Mediator of RNA polymerase II transcripti...    34   3.2
BC072653_1(BC072653|pid:none) Mus musculus mediator complex subu...    34   3.2
AY338464_1(AY338464|pid:none) Mus musculus thyroid hormone recep...    34   3.2
BC156485_1(BC156485|pid:none) Synthetic construct Mus musculus c...    34   3.2
AJ410483_2(AJ410483|pid:none) Saimiriine herpesvirus 2 orf49 to ...    34   4.1
M60850_2(M60850|pid:none) Herpesvirus saimiri HVS.R, dD4.7-RF2, ...    34   4.1
A37994(A37994) RF1 protein - saimiriine herpesvirus 1  &M86409_3...    34   4.1
BC055217_1(BC055217|pid:none) Danio rerio myristoylated alanine ...    34   4.1
BC044554_1(BC044554|pid:none) Danio rerio zgc:85677, mRNA (cDNA ...    34   4.1
AJ410482_2(AJ410482|pid:none) Saimiriine herpesvirus 2 ORF49 to ...    34   4.1
EU164537_8(EU164537|pid:none) Coffea canephora BAC 41C02, genomi...    34   4.1
AM476019_4(AM476019|pid:none) Vitis vinifera contig VV78X108288....    33   5.4
AM463589_1(AM463589|pid:none) Vitis vinifera contig VV78X081971....    33   5.4
AJ271740_1(AJ271740|pid:none) Drosophila melanogaster D-Titin ge...    33   7.0
(Q9N9Y7) RecName: Full=Titin; AltName: Full=D-Titin; AltName: Fu...    33   7.0
CP001130_1384(CP001130|pid:none) Hydrogenobaculum sp. Y04AAS1, c...    33   7.0
AB023146_1(AB023146|pid:none) Homo sapiens mRNA for KIAA0929 pro...    33   7.0
CR855212_6(CR855212|pid:none) Oryza sativa genomic DNA, chromoso...    33   7.0
CR954207_16(CR954207|pid:none) Ostreococcus tauri strain OTTH059...    33   7.0
BC153772_1(BC153772|pid:none) Xenopus laevis hypothetical protei...    33   7.0
(Q96T58) RecName: Full=Msx2-interacting protein; AltName: Full=S...    33   7.0
AK068612_1(AK068612|pid:none) Oryza sativa Japonica Group cDNA c...    33   7.0
AK100329_1(AK100329|pid:none) Oryza sativa Japonica Group cDNA c...    33   7.0
EF084702_1(EF084702|pid:none) Picea sitchensis clone WS02727_G03...    33   7.0
BC172907_1(BC172907|pid:none) Synthetic construct Homo sapiens c...    33   7.0
AB384544_1(AB384544|pid:none) Synthetic construct DNA, clone: pF...    33   7.0
EU847508_1(EU847508|pid:none) Candida albicans strain SC5314 put...    33   7.0
AL035475_1(AL035475|pid:none) Plasmodium falciparum MAL4P2.            33   9.2
AJ863163_1(AJ863163|pid:none) Clostridium thermocellum celY gene...    33   9.2
BC148104_1(BC148104|pid:none) Bos taurus budding uninhibited by ...    33   9.2
AM477521_1(AM477521|pid:none) Vitis vinifera contig VV78X035693....    33   9.2
EU975507_1(EU975507|pid:none) Zea mays clone 491085 DNA-binding ...    33   9.2
BC167982_1(BC167982|pid:none) Xenopus tropicalis cDNA clone MGC:...    33   9.2
(P40276) RecName: Full=Histone H1B;  &L29108_1(L29108|pid:none)        33   9.2
CP001142_205(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1...    33   9.2
CP000568_70(CP000568|pid:none) Clostridium thermocellum ATCC 274...    33   9.2
AL844503_62(AL844503|pid:none) Plasmodium falciparum 3D7 chromos...    33   9.2
AK090457_1(AK090457|pid:none) Homo sapiens mRNA for FLJ00378 pro...    33   9.2
AB051555_1(AB051555|pid:none) Homo sapiens mRNA for KIAA1768 pro...    33   9.2

>AC116957_116(AC116957|pid:none) Dictyostelium discoideum chromosome 2
            map 1685067-2090751 strain AX4, complete sequence.
          Length = 1752

 Score =  139 bits (350), Expect = 7e-32
 Identities = 71/86 (82%), Positives = 71/86 (82%)
 Frame = +1

Query: 346  DKKXXXXXXXXXXXXXXXYDSDHLTKNKNLLKVSTPDGNSSSAPGSPILSPQSMNSVFPP 525
            DKK               YDSDHLTKNKNLLKVSTPDGNSSSAPGSPILSPQSMNSVFPP
Sbjct: 1667 DKKSSLPPLPNPNNLSNNYDSDHLTKNKNLLKVSTPDGNSSSAPGSPILSPQSMNSVFPP 1726

Query: 526  NAPLSPALYPSNLSNSTLAQRVTLDK 603
            NAPLSPALYPSNLSNSTLAQRVTLDK
Sbjct: 1727 NAPLSPALYPSNLSNSTLAQRVTLDK 1752

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 586,309,138
Number of extensions: 10300446
Number of successful extensions: 45819
Number of sequences better than 10.0: 70
Number of HSP's gapped: 45533
Number of HSP's successfully gapped: 71
Length of query: 213
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 90
Effective length of database: 653,084,107
Effective search space: 58777569630
Effective search space used: 58777569630
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.46  gvh: 0.32  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 24.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U15264-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0