Contig-U15259-1
Contig ID Contig-U15259-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15259-1 (Contig-U15259-1Q) /CSM_Contig/Contig-U15259-1Q.Seq.d
GTTCAAATTTATTGTTTTTTTATCACCACAAAGAAATGGCCAAGTCAAAG
AATCACTCAACCCATCACAAAAACAGAAAGGACCACAGAAACGGTATTAA
AAAAGCCGTCGTCCACAAAAAGACCTCCTCAAAAGGTGTTGAATTAGGTT
TCGCCAGAAATCAAAGATACGCTCGTATTGGTACTGAAATCAAAAGATAC
GTTCGTGGTGATATGCAAGAGGTCAAAGCCCACAAAAACCCAAGACAACC
ATTAAAGACCATCGTCGCTGCTGCTAAAGCCAAATTAGCTGCCAAAAAAG
CTGCTGCCAAAAAATAAATAAATAATGATTTTTAATAACGTCGATAATTT
AAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Gap no gap
Contig length 430
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 4538852
End point 4538498
Strand (PLUS/MINUS) MINUS
Number of clones 11
Number of EST 19
Link to clone list U15259
List of clone(s)

est1=VFO249F,1,370
est2=VSH172F,17,353
est3=VSI208Z,21,336
est4=VSJ691F,21,360
est5=VSD322F,27,355
est6=VSD322Z,27,340
est7=VSB149E,29,343
est8=VSJ691Z,29,340
est9=VSG339Z,30,339
est10=VSH172Z,30,338
est11=VSH590Z,30,337
est12=VSI235Z,30,325
est13=VSK408F,30,393
est14=VSK408Z,30,375
est15=VSH590F,31,353
est16=VSI208F,33,355
est17=VSG339F,34,355
est18=VSI235F,46,353
est19=VSA294E,186,430
Translated Amino Acid sequence
SNLLFFYHHKEMAKSKNHSTHHKNRKDHRNGIKKAVVHKKTSSKGVELGFARNQRYARIG
TEIKRYVRGDMQEVKAHKNPRQPLKTIVAAAKAKLAAKKAAAKK*inndf**rr*fktkk
kkkkkkkkkkkkkkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
vqiycffittkkwpsqritqpitkterttetvlkkpsstkrppqkvln*vspeikdtlvl
vlkskdtfvvickrskptktqdnh*rpsslllkpn*lpkkllpknk*imifnnvdnlkqk
kkkkkkkkkkkkkkkkkkkkkkk


Frame B:
fkfivflspqrngqvkeslnpsqkqkgpqkry*ksrrpqkdllkrc*irfrqkskirsyw
y*nqkirsw*yargqspqkpkttikdhrrcc*sqiscqksccqkink**flitsii*nkk
kkkkkkkkkkkkkkkkkkkkkkk


Frame C:
SNLLFFYHHKEMAKSKNHSTHHKNRKDHRNGIKKAVVHKKTSSKGVELGFARNQRYARIG
TEIKRYVRGDMQEVKAHKNPRQPLKTIVAAAKAKLAAKKAAAKK*inndf**rr*fktkk
kkkkkkkkkkkkkkkkkkkkkk


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15259-1 (Contig-U15259-1Q)
/CSM_Contig/Contig-U15259-1Q.Seq.d
(430 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15259-1 (Contig-U15259-1Q) /CSM_Contig/Conti... 662 0.0
Contig-U12539-1 (Contig-U12539-1Q) /CSM_Contig/Conti... 44 2e-04
Contig-U02852-1 (Contig-U02852-1Q) /CSM_Contig/Conti... 42 7e-04
Contig-U15139-1 (Contig-U15139-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U12835-1 (Contig-U12835-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U09803-1 (Contig-U09803-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U04549-1 (Contig-U04549-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U15846-1 (Contig-U15846-1Q) /CSM_Contig/Conti... 38 0.011
Contig-U14179-1 (Contig-U14179-1Q) /CSM_Contig/Conti... 38 0.011
Contig-U14139-1 (Contig-U14139-1Q) /CSM_Contig/Conti... 38 0.011

>Contig-U15259-1 (Contig-U15259-1Q) /CSM_Contig/Contig-U15259-1Q.Seq.d
Length = 430

Score = 662 bits (334), Expect = 0.0
Identities = 348/355 (98%)
Strand = Plus / Plus


Query: 1 gttcaaatttattgnnnnnnnatcaccacaaagaaatggccaagtcaaagaatcactcaa 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttcaaatttattgtttttttatcaccacaaagaaatggccaagtcaaagaatcactcaa 60


Query: 61 cccatcacaaaaacagaaaggaccacagaaacggtattaaaaaagccgtcgtccacaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cccatcacaaaaacagaaaggaccacagaaacggtattaaaaaagccgtcgtccacaaaa 120


Query: 121 agacctcctcaaaaggtgttgaattaggtttcgccagaaatcaaagatacgctcgtattg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agacctcctcaaaaggtgttgaattaggtttcgccagaaatcaaagatacgctcgtattg 180


Query: 181 gtactgaaatcaaaagatacgttcgtggtgatatgcaagaggtcaaagcccacaaaaacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtactgaaatcaaaagatacgttcgtggtgatatgcaagaggtcaaagcccacaaaaacc 240


Query: 241 caagacaaccattaaagaccatcgtcgctgctgctaaagccaaattagctgccaaaaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caagacaaccattaaagaccatcgtcgctgctgctaaagccaaattagctgccaaaaaag 300


Query: 301 ctgctgccaaaaaataaataaataatgatttttaataacgtcgataatttaaaac 355
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctgctgccaaaaaataaataaataatgatttttaataacgtcgataatttaaaac 355


>Contig-U12539-1 (Contig-U12539-1Q) /CSM_Contig/Contig-U12539-1Q.Seq.d
Length = 1381

Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus


Query: 312 aaataaataaataatgattttt 333
||||||||||||||||||||||
Sbjct: 81 aaataaataaataatgattttt 60


Score = 34.2 bits (17), Expect = 0.17
Identities = 17/17 (100%)
Strand = Plus / Minus


Query: 309 aaaaaataaataaataa 325
|||||||||||||||||
Sbjct: 92 aaaaaataaataaataa 76


>Contig-U02852-1 (Contig-U02852-1Q) /CSM_Contig/Contig-U02852-1Q.Seq.d
Length = 1230

Score = 42.1 bits (21), Expect = 7e-04
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 282 aaattagctgccaaaaaagctgctg 306
|||||||||||| ||||||||||||
Sbjct: 1153 aaattagctgccgaaaaagctgctg 1177


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,354
Number of Sequences: 8402
Number of extensions: 11354
Number of successful extensions: 3675
Number of sequences better than 10.0: 634
length of query: 430
length of database: 8,075,542
effective HSP length: 16
effective length of query: 414
effective length of database: 7,941,110
effective search space: 3287619540
effective search space used: 3287619540
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.18
Homology vs DNA
Query= Contig-U15259-1 (Contig-U15259-1Q) /CSM_Contig/Contig-U15259-1Q.Seq.d
(430 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ445355) Dictyostelium discoideum cDNA clone:ddv59p05, 3' ... 486 e-135 2
(BJ417114) Dictyostelium discoideum cDNA clone:ddv29a14, 5' ... 480 e-133 2
(AU263837) Dictyostelium discoideum vegetative cDNA clone:VS... 476 e-130 1
(AU263836) Dictyostelium discoideum vegetative cDNA clone:VS... 476 e-130 1
(AU270327) Dictyostelium discoideum vegetative cDNA clone:VS... 472 e-129 1
(AU270326) Dictyostelium discoideum vegetative cDNA clone:VS... 472 e-129 1
(AU261852) Dictyostelium discoideum vegetative cDNA clone:VS... 472 e-129 1
(AU271140) Dictyostelium discoideum vegetative cDNA clone:VS... 470 e-128 1
(AU271139) Dictyostelium discoideum vegetative cDNA clone:VS... 470 e-128 1
(AU268369) Dictyostelium discoideum vegetative cDNA clone:VS... 470 e-128 1
(AU267680) Dictyostelium discoideum vegetative cDNA clone:VS... 470 e-128 1
(AU267020) Dictyostelium discoideum vegetative cDNA clone:VS... 470 e-128 1
(AU266332) Dictyostelium discoideum vegetative cDNA clone:VS... 470 e-128 1
(AU267679) Dictyostelium discoideum vegetative cDNA clone:VS... 468 e-128 1
(AU268321) Dictyostelium discoideum vegetative cDNA clone:VS... 464 e-126 1
(AU268320) Dictyostelium discoideum vegetative cDNA clone:VS... 464 e-126 1
(AU267019) Dictyostelium discoideum vegetative cDNA clone:VS... 464 e-126 1
(AU268368) Dictyostelium discoideum vegetative cDNA clone:VS... 438 e-119 1
(AU266331) Dictyostelium discoideum vegetative cDNA clone:VS... 418 e-118 2
(EC761975) PSE00007884 rw_mgpallid Polysphondylium pallidum ... 52 2e-18 3
(AU261404) Dictyostelium discoideum vegetative cDNA clone:VS... 86 1e-12 1
(EC762654) PSE00006742 rw_mgpallid Polysphondylium pallidum ... 50 4e-10 2
(FE218415) L110G07 Antarctic fish Dissostichus mawsoni adult... 56 0.001 1
(FE208600) K060D09 Antarctic fish Dissostichus mawsoni adult... 56 0.001 1
(FE205438) K012C10 Antarctic fish Dissostichus mawsoni adult... 56 0.001 1
(FE205424) K012A12 Antarctic fish Dissostichus mawsoni adult... 56 0.001 1
(CT754403) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.015 2
(DY767881) 48H_new17_F23 Bicyclus anynana wings - 48H pupae ... 52 0.018 1
(DY767308) 48H_new15_M22 Bicyclus anynana wings - 48H pupae ... 52 0.018 1
(DY763849) CPP_new08_G04 Bicyclus anynana wings - CPP Bicycl... 52 0.018 1
(BY913746) Cryptomeria japonica cDNA clone: CMFL052_D08, 3'e... 50 0.070 1
(BY906647) Cryptomeria japonica cDNA clone: CMFL030_P17, 3'e... 50 0.070 1
(BY902030) Cryptomeria japonica cDNA clone: CMFL016_P16, 3'e... 50 0.070 1
(BY896508) Cryptomeria japonica cDNA clone: CMFL052_D08, 5'e... 50 0.070 1
(BY892485) Cryptomeria japonica cDNA clone: CMFL041_A02, 5'e... 50 0.070 1
(BY888822) Cryptomeria japonica cDNA clone: CMFL030_P17, 5'e... 50 0.070 1
(BY883706) Cryptomeria japonica cDNA clone: CMFL016_P16, 5'e... 50 0.070 1
(BW995803) Cryptomeria japonica cDNA, clone: CM04230, 3' end... 50 0.070 1
(BW992620) Cryptomeria japonica cDNA, clone: CC10314, 5' end... 50 0.070 1
(FE967117) PLATE_T3_034_G06_01DEC2004_036 Opium poppy elicit... 50 0.070 1
(FE965945) PLATE_T3_022_A12_02DEC2004_096 Opium poppy elicit... 50 0.070 1
(FE964149) PLATE_T3_002_A09_18NOV2004_079 Opium poppy elicit... 50 0.070 1
(DT777634) 125661147 TH1 Tribolium castaneum cDNA clone 30A1... 36 0.21 2
(DT783939) 127466909 TH1 Tribolium castaneum cDNA clone 125I... 36 0.22 2
(BU275844) Cr_Emb_08E10_TEXF1 Convoluta roscoffensis embryos... 34 0.22 2
(EC588036) H_H9_G05_13 H Rosa hybrid cultivar cDNA clone H9G... 48 0.28 1
(EC587319) H_H26_C05_05 H Rosa hybrid cultivar cDNA clone H2... 48 0.28 1
(DY769897) 72H_new21_O21 Bicyclus anynana wings - 72H pupae ... 48 0.28 1
(DY766775) 24H_new15_G19 Bicyclus anynana wings - 24H pupae ... 48 0.28 1
(DY766535) 24H_new14_M05 Bicyclus anynana wings - 24H pupae ... 48 0.28 1
(CN472625) USDA-FP_121713 Diaprepes abbreviatus, Diaprepes r... 48 0.28 1
(CA994634) Hc_egg_22D08_SKPL Haemonchus contortus egg SL1 fr... 48 0.28 1
(CA994443) Hc_egg_20A01_SKPL Haemonchus contortus egg SL1 fr... 48 0.28 1
(CA994375) Hc_egg_19B09_SKPL Haemonchus contortus egg SL1 fr... 48 0.28 1
(CA994373) Hc_egg_19B07_SKPL Haemonchus contortus egg SL1 fr... 48 0.28 1
(BQ106289) gg1230.e Rose Petals (Golden Gate) Lambda Zap Exp... 48 0.28 1
(BQ105463) gg1547.e Rose Petals (Golden Gate) Lambda Zap Exp... 48 0.28 1
(BI978642) vF04 Old Blush petal SMART library Rosa chinensis... 48 0.28 1
(BI978614) vC10 Old Blush petal SMART library Rosa chinensis... 48 0.28 1
(BI595045) Hc_egg_06F11_SKPL Haemonchus contortus egg SL1 fr... 48 0.28 1
(BF186591) Hc_egg_02C08_SKPL Haemonchus contortus egg SL1 fr... 48 0.28 1
(BF186561) Hc_egg_01H03_SKPL Haemonchus contortus egg SL1 fr... 48 0.28 1
(BF186534) Hc_egg_01E09_SKPL Haemonchus contortus egg SL1 fr... 48 0.28 1
(FE208220) K056A01 Antarctic fish Dissostichus mawsoni adult... 48 0.28 1
(ES894727) LET081_2007-02-10/LET081_G11_042_1 Solanum lycope... 48 0.28 1
(BM872247) mgmy002xG16f.b Magnaporthe grisea MY Uni-Zap XR L... 36 0.79 2
(AF204786) Lycopersicon esculentum ripening regulated protei... 46 1.1 1
(AC212696) Zea mays chromosome 7 clone CH201-241E7; ZMMBBc02... 46 1.1 1
(AC198864) Zea mays chromosome 7 clone CH201-55L22; ZMMBBc00... 46 1.1 1
(AK246886) Solanum lycopersicum cDNA, clone: FC06DA10, HTC i... 46 1.1 1
(EE002736) ROE00013078 Rhizopus oryzae Company Rhizopus oryz... 46 1.1 1
(EE000932) ROE00012982 Rhizopus oryzae Company Rhizopus oryz... 46 1.1 1
(EC745679) PSE00004308 rw_mgpallid Polysphondylium pallidum ... 46 1.1 1
(AI777605) EST258579 tomato susceptible, Cornell Solanum lyc... 46 1.1 1
(BW686661) Solanum lycopersicum cDNA, clone: FC06DA10, 5' en... 46 1.1 1
(BW686003) Solanum lycopersicum cDNA, clone: FC04CG11, 5' en... 46 1.1 1
(BP902636) Solanum lycopersicum cDNA, clone: LB01CD08, 5' en... 46 1.1 1
(BI210551) EST528591 cTOS Solanum lycopersicum cDNA clone cT... 46 1.1 1
(BI208002) EST526042 cTOS Solanum lycopersicum cDNA clone cT... 46 1.1 1
(BG631299) cC-esflcLEL7D14a1 Tomato flower library from a mi... 46 1.1 1
(BG627240) cC-esflcLEL16L160d1 Tomato flower library from a ... 46 1.1 1
(BG132916) EST465808 tomato crown gall Solanum lycopersicum ... 46 1.1 1
(BG132362) EST465254 tomato crown gall Solanum lycopersicum ... 46 1.1 1
(BE344420) EST313600 tomato root, plants pre-anthesis, Corne... 46 1.1 1
(FD449895) EGGA210TR Haematobia irritans eggs Haematobia irr... 46 1.1 1
(FD449894) EGGA210TF Haematobia irritans eggs Haematobia irr... 46 1.1 1
(AW626078) EST319985 tomato radicle, 5 d post-imbibition, Co... 46 1.1 1
(ES893525) LET063_2006-11-03_1/LET063_E07_028_1 Solanum lyco... 46 1.1 1
(CT801985) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 2.0 2
(CT791048) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 2.0 2
(CT747406) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 2.0 2
(CT816563) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 2.0 2
(CT741490) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 2.0 2
(DW124312) CLSX10761.b1_A03.ab1 CLS(XYZ) lettuce sativa Lact... 34 3.0 2
(DW124065) CLSX10509.b1_J11.ab1 CLS(XYZ) lettuce sativa Lact... 34 3.0 2
(EL529941) EST_omor_eva_9094 omoreva mixed_tissue Osmerus mo... 44 4.3 1
(EG012578) STDB002E12u STDB Solanum tuberosum cDNA clone STD... 44 4.3 1
(EC781924) POAL09B03.F Colubridae snake Philodryas olfersii ... 44 4.3 1
(EB626092) AGENCOURT_56938106 D. grimshawi EST Drosophila gr... 44 4.3 1
(EB599979) AGENCOURT_56966353 D. grimshawi EST Drosophila gr... 44 4.3 1

>(BJ445355) Dictyostelium discoideum cDNA clone:ddv59p05, 3' end,
single read.
Length = 722

Score = 486 bits (245), Expect(2) = e-135
Identities = 245/245 (100%)
Strand = Plus / Minus


Query: 22 atcaccacaaagaaatggccaagtcaaagaatcactcaacccatcacaaaaacagaaagg 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atcaccacaaagaaatggccaagtcaaagaatcactcaacccatcacaaaaacagaaagg 243


Query: 82 accacagaaacggtattaaaaaagccgtcgtccacaaaaagacctcctcaaaaggtgttg 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 accacagaaacggtattaaaaaagccgtcgtccacaaaaagacctcctcaaaaggtgttg 183


Query: 142 aattaggtttcgccagaaatcaaagatacgctcgtattggtactgaaatcaaaagatacg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 aattaggtttcgccagaaatcaaagatacgctcgtattggtactgaaatcaaaagatacg 123


Query: 202 ttcgtggtgatatgcaagaggtcaaagcccacaaaaacccaagacaaccattaaagacca 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ttcgtggtgatatgcaagaggtcaaagcccacaaaaacccaagacaaccattaaagacca 63


Query: 262 tcgtc 266
|||||
Sbjct: 62 tcgtc 58

Score = 28.2 bits (14), Expect(2) = e-135
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 1 gttcaaatttattg 14
||||||||||||||
Sbjct: 323 gttcaaatttattg 310

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 295,462,524
Number of extensions: 15488105
Number of successful extensions: 1087215
Number of sequences better than 10.0: 150
Length of query: 430
Length of database: 98,766,808,389
Length adjustment: 23
Effective length of query: 407
Effective length of database: 100,802,567,956
Effective search space: 41026645158092
Effective search space used: 41026645158092
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 7.15
Homology vs Protein
Query= Contig-U15259-1 (Contig-U15259-1Q) /CSM_Contig/Contig-U15259-1Q.Seq.d
(430 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q54TW3) RecName: Full=60S ribosomal protein L29; 159 2e-38
BT071085_1(BT071085|pid:none) Picea sitchensis clone WS02770_A12... 63 3e-09
EF144317_1(EF144317|pid:none) Populus trichocarpa clone PX0015_I... 63 4e-09
AC126780_31(AC126780|pid:none) Medicago truncatula clone mth2-10... 62 5e-09
AF204786_1(AF204786|pid:none) Lycopersicon esculentum ripening r... 62 6e-09
CR382134_651(CR382134|pid:none) Debaryomyces hansenii strain CBS... 61 1e-08
AM910994_456(AM910994|pid:none) Plasmodium knowlesi strain H chr... 61 1e-08
EU965693_1(EU965693|pid:none) Zea mays clone 288030 60S ribosoma... 60 2e-08
EU954467_1(EU954467|pid:none) Zea mays clone 1468352 60S ribosom... 60 2e-08
EU953347_1(EU953347|pid:none) Zea mays clone 1401157 60S ribosom... 60 2e-08
EU974852_1(EU974852|pid:none) Zea mays clone 459902 60S ribosoma... 60 2e-08
EU970730_1(EU970730|pid:none) Zea mays clone 349621 60S ribosoma... 60 2e-08
AM469966_1(AM469966|pid:none) Vitis vinifera contig VV78X163145.... 60 2e-08
CR382132_358(CR382132|pid:none) Yarrowia lipolytica strain CLIB1... 60 2e-08
AF401584_1(AF401584|pid:none) Ictalurus punctatus ribosomal prot... 60 2e-08
BT053701_1(BT053701|pid:none) Drosophila melanogaster GM15778 fu... 60 2e-08
BC053776_1(BC053776|pid:none) Xenopus laevis hypothetical protei... 60 3e-08
CR380950_220(CR380950|pid:none) Candida glabrata strain CBS138 c... 60 3e-08
CR382124_666(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 60 3e-08
(Q24154) RecName: Full=60S ribosomal protein L29; AltName: Full=... 60 3e-08
(Q84WM0) RecName: Full=60S ribosomal protein L29-2; &AC023912_1... 59 4e-08
(Q9M7X7) RecName: Full=60S ribosomal protein L29-1; &AC023912_1... 59 4e-08
EF634700_1(EF634700|pid:none) Pristionchus sp. 15 RS5229 large s... 59 4e-08
AK227625_1(AK227625|pid:none) Arabidopsis thaliana mRNA for puta... 59 4e-08
FJ502051_1(FJ502051|pid:none) Aristichthys nobilis clone A204 un... 59 5e-08
EF634698_1(EF634698|pid:none) Pristionchus sp. 13 RS5231 large s... 59 5e-08
CU928169_194(CU928169|pid:none) Kluyveromyces thermotolerans str... 59 7e-08
AY961496_1(AY961496|pid:none) Lysiphlebus testaceipes ribosomal ... 59 7e-08
EF634691_1(EF634691|pid:none) Pristionchus sp. 6 RS5101 large su... 58 9e-08
AF429975_1(AF429975|pid:none) Spodoptera frugiperda ribosomal pr... 58 9e-08
EF633861_1(EF633861|pid:none) Ornithodoros parkeri clone OP-144 ... 57 2e-07
BT003047_1(BT003047|pid:none) Arabidopsis thaliana At3g06680 gen... 57 2e-07
BC078539_1(BC078539|pid:none) Xenopus laevis MGC85384 protein, m... 57 2e-07
(Q95281) RecName: Full=60S ribosomal protein L29; &AB016798_1(A... 57 2e-07
AY892470_1(AY892470|pid:none) Synthetic construct Homo sapiens c... 57 2e-07
(Q58DW3) RecName: Full=60S ribosomal protein L29; &AY911327_1(A... 57 2e-07
BC157802_1(BC157802|pid:none) Xenopus tropicalis hypothetical pr... 57 2e-07
(P47914) RecName: Full=60S ribosomal protein L29; AltName: Full=... 57 2e-07
(P25886) RecName: Full=60S ribosomal protein L29; AltName: Full=... 57 2e-07
(P47915) RecName: Full=60S ribosomal protein L29; &AF236069_1(A... 57 2e-07
FN357504_8(FN357504|pid:none) Schistosoma mansoni genome sequenc... 57 2e-07
BT043739_1(BT043739|pid:none) Salmo salar clone HM6_0552 ribosom... 57 3e-07
(Q92366) RecName: Full=60S ribosomal protein L29; AltName: Full=... 57 3e-07
AX885202_1(AX885202|pid:none) Sequence 1065 from Patent EP1033401. 57 3e-07
EU045353_1(EU045353|pid:none) Phlebotomus papatasi 60S ribosomal... 57 3e-07
AM849531_1(AM849531|pid:none) Pomphorhynchus laevis partial mRNA... 57 3e-07
BT047886_1(BT047886|pid:none) Salmo salar clone ssal-evd-561-056... 57 3e-07
AY769299_1(AY769299|pid:none) Bombyx mori ribosomal protein L29 ... 56 3e-07
AM920437_2566(AM920437|pid:none) Penicillium chrysogenum Wiscons... 56 3e-07
EF123141_1(EF123141|pid:none) Saccharomyces cerevisiae strain BY... 56 3e-07
BT073509_1(BT073509|pid:none) Oncorhynchus mykiss clone omyk-evn... 56 5e-07
EU116866_1(EU116866|pid:none) Sipunculus nudus putative ribosoma... 54 1e-06
BX001068_8(BX001068|pid:none) Mouse DNA sequence from clone RP23... 54 2e-06
AY915041_1(AY915041|pid:none) Schistosoma japonicum SJCHGC02562 ... 54 2e-06
FN317452_1(FN317452|pid:none) Schistosoma japonicum isolate Anhu... 54 2e-06
AM049107_1(AM049107|pid:none) Timarcha balearica mRNA for riboso... 54 2e-06
CU633900_437(CU633900|pid:none) Podospora anserina genomic DNA c... 54 2e-06
AM049106_1(AM049106|pid:none) Georissus sp. APV-2005 mRNA for ri... 53 3e-06
DQ081725_1(DQ081725|pid:none) Holosticha sp. WJC-2003 ribosomal ... 53 3e-06
EU116907_1(EU116907|pid:none) Barentsia elongata putative riboso... 53 4e-06
AY292617_1(AY292617|pid:none) Oikopleura dioica 60S ribosomal pr... 52 5e-06
EU934311_1(EU934311|pid:none) TSA: Anopheles darlingi AD-286 60S... 52 7e-06
AY075553_1(AY075553|pid:none) Drosophila melanogaster RH58777 fu... 52 9e-06
D87869_1(D87869|pid:none) Schizosaccharomyces pombe mRNA for rib... 51 1e-05
FN392322_386(FN392322|pid:none) Pichia pastoris GS115 chromosome... 51 1e-05
CR940348_869(CR940348|pid:none) Theileria annulata strain Ankara... 51 1e-05
DQ081722_1(DQ081722|pid:none) Stylonychia lemnae strain Y riboso... 50 2e-05
AY857444_1(AY857444|pid:none) Suberites domuncula L29 mRNA, comp... 50 2e-05
DQ081723_1(DQ081723|pid:none) Sterkiella histriomuscorum strain ... 50 3e-05
DQ081721_1(DQ081721|pid:none) Uroleptus sp. WJC-2003 ribosomal p... 49 6e-05
AJ133113_1(AJ133113|pid:none) Globodera rostochiensis mRNA for p... 48 9e-05
AJ388526_1(AJ388526|pid:none) Canis familiaris mRNA for partial ... 48 9e-05
DQ440079_1(DQ440079|pid:none) Aedes aegypti clone AE-356 60S rib... 48 1e-04
AE017347_367(AE017347|pid:none) Cryptococcus neoformans var. neo... 46 4e-04
EU190378_1(EU190378|pid:none) Helicoverpa armigera RpL29 (RpL29)... 44 0.002
CT005272_350(CT005272|pid:none) Leishmania major strain Friedlin... 43 0.004
AM502254_338(AM502254|pid:none) Leishmania infantum chromosome 36. 43 0.004
AM494972_362(AM494972|pid:none) Leishmania braziliensis chromoso... 40 0.020
BT088001_1(BT088001|pid:none) Zea mays full-length cDNA clone ZM... 38 0.097
U97387_1(U97387|pid:none) Schizosaccharomyces pombe 60S ribosoma... 36 0.49
CP000302_2428(CP000302|pid:none) Shewanella denitrificans OS217,... 34 1.8
AM910988_57(AM910988|pid:none) Plasmodium knowlesi strain H chro... 33 3.1
AK291997_1(AK291997|pid:none) Homo sapiens cDNA FLJ77431 complet... 32 5.3
AF309632_1(AF309632|pid:none) Homo sapiens concentrative nucleos... 32 5.3
AF187978_1(AF187978|pid:none) Homo sapiens concentrative nucleos... 32 5.3
U62967_1(U62967|pid:none) Human Na+/nucleoside cotransporter (hC... 32 5.3
AK296074_1(AK296074|pid:none) Homo sapiens cDNA FLJ58112 complet... 32 5.3
BC126204_1(BC126204|pid:none) Homo sapiens solute carrier family... 32 5.3
(A5E572) RecName: Full=ATP-dependent RNA helicase DBP9; ... 32 5.4
FN313699_1(FN313699|pid:none) Schistosoma japonicum isolate Anhu... 32 5.4
AY814168_1(AY814168|pid:none) Schistosoma japonicum SJCHGC09158 ... 32 5.4
(Q54X08) RecName: Full=Myb-like protein V; 32 7.0
(Q99107) RecName: Full=Protein TSD2; &U50276_1(U50276|pid:none) 32 9.2

>(Q54TW3) RecName: Full=60S ribosomal protein L29;
Length = 93

Score = 159 bits (403), Expect = 2e-38
Identities = 77/77 (100%), Positives = 77/77 (100%)
Frame = +3

Query: 36 MAKSKNHSTHHKNRKDHRNGIKKAVVHKKTSSKGVELGFARNQRYARIGTEIKRYVRGDM 215
MAKSKNHSTHHKNRKDHRNGIKKAVVHKKTSSKGVELGFARNQRYARIGTEIKRYVRGDM
Sbjct: 1 MAKSKNHSTHHKNRKDHRNGIKKAVVHKKTSSKGVELGFARNQRYARIGTEIKRYVRGDM 60

Query: 216 QEVKAHKNPRQPLKTIV 266
QEVKAHKNPRQPLKTIV
Sbjct: 61 QEVKAHKNPRQPLKTIV 77

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 554,660,164
Number of extensions: 9657646
Number of successful extensions: 32326
Number of sequences better than 10.0: 93
Number of HSP's gapped: 32214
Number of HSP's successfully gapped: 94
Length of query: 143
Length of database: 1,051,180,864
Length adjustment: 106
Effective length of query: 37
Effective length of database: 708,105,610
Effective search space: 26199907570
Effective search space used: 26199907570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)

PSORT

psg: 0.56 gvh: 0.30 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.10
nuc: 0.12 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: cytoskeletal

>> prediction for Contig-U15259-1 is nuc

VS (DIR, S) 10
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0