Contig-U15259-1 |
Contig ID |
Contig-U15259-1 |
Contig update |
2004. 6.11 |
Contig sequence |
|
Gap |
no gap |
Contig length |
430 |
Chromosome number (1..6, M) |
3 |
Chromosome length |
6358359 |
Start point |
4538852 |
End point |
4538498 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
11 |
Number of EST |
19 |
Link to clone list |
U15259 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.23 |
Homology vs CSM-cDNA |
|
dna update |
2009. 1.18 |
Homology vs DNA |
Query= Contig-U15259-1 (Contig-U15259-1Q) /CSM_Contig/Contig-U15259-1Q.Seq.d (430 letters)
Database: ddbj_B 98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ445355) Dictyostelium discoideum cDNA clone:ddv59p05, 3' ... 486 e-135 2 (BJ417114) Dictyostelium discoideum cDNA clone:ddv29a14, 5' ... 480 e-133 2 (AU263837) Dictyostelium discoideum vegetative cDNA clone:VS... 476 e-130 1 (AU263836) Dictyostelium discoideum vegetative cDNA clone:VS... 476 e-130 1 (AU270327) Dictyostelium discoideum vegetative cDNA clone:VS... 472 e-129 1 (AU270326) Dictyostelium discoideum vegetative cDNA clone:VS... 472 e-129 1 (AU261852) Dictyostelium discoideum vegetative cDNA clone:VS... 472 e-129 1 (AU271140) Dictyostelium discoideum vegetative cDNA clone:VS... 470 e-128 1 (AU271139) Dictyostelium discoideum vegetative cDNA clone:VS... 470 e-128 1 (AU268369) Dictyostelium discoideum vegetative cDNA clone:VS... 470 e-128 1 (AU267680) Dictyostelium discoideum vegetative cDNA clone:VS... 470 e-128 1 (AU267020) Dictyostelium discoideum vegetative cDNA clone:VS... 470 e-128 1 (AU266332) Dictyostelium discoideum vegetative cDNA clone:VS... 470 e-128 1 (AU267679) Dictyostelium discoideum vegetative cDNA clone:VS... 468 e-128 1 (AU268321) Dictyostelium discoideum vegetative cDNA clone:VS... 464 e-126 1 (AU268320) Dictyostelium discoideum vegetative cDNA clone:VS... 464 e-126 1 (AU267019) Dictyostelium discoideum vegetative cDNA clone:VS... 464 e-126 1 (AU268368) Dictyostelium discoideum vegetative cDNA clone:VS... 438 e-119 1 (AU266331) Dictyostelium discoideum vegetative cDNA clone:VS... 418 e-118 2 (EC761975) PSE00007884 rw_mgpallid Polysphondylium pallidum ... 52 2e-18 3 (AU261404) Dictyostelium discoideum vegetative cDNA clone:VS... 86 1e-12 1 (EC762654) PSE00006742 rw_mgpallid Polysphondylium pallidum ... 50 4e-10 2 (FE218415) L110G07 Antarctic fish Dissostichus mawsoni adult... 56 0.001 1 (FE208600) K060D09 Antarctic fish Dissostichus mawsoni adult... 56 0.001 1 (FE205438) K012C10 Antarctic fish Dissostichus mawsoni adult... 56 0.001 1 (FE205424) K012A12 Antarctic fish Dissostichus mawsoni adult... 56 0.001 1 (CT754403) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 0.015 2 (DY767881) 48H_new17_F23 Bicyclus anynana wings - 48H pupae ... 52 0.018 1 (DY767308) 48H_new15_M22 Bicyclus anynana wings - 48H pupae ... 52 0.018 1 (DY763849) CPP_new08_G04 Bicyclus anynana wings - CPP Bicycl... 52 0.018 1 (BY913746) Cryptomeria japonica cDNA clone: CMFL052_D08, 3'e... 50 0.070 1 (BY906647) Cryptomeria japonica cDNA clone: CMFL030_P17, 3'e... 50 0.070 1 (BY902030) Cryptomeria japonica cDNA clone: CMFL016_P16, 3'e... 50 0.070 1 (BY896508) Cryptomeria japonica cDNA clone: CMFL052_D08, 5'e... 50 0.070 1 (BY892485) Cryptomeria japonica cDNA clone: CMFL041_A02, 5'e... 50 0.070 1 (BY888822) Cryptomeria japonica cDNA clone: CMFL030_P17, 5'e... 50 0.070 1 (BY883706) Cryptomeria japonica cDNA clone: CMFL016_P16, 5'e... 50 0.070 1 (BW995803) Cryptomeria japonica cDNA, clone: CM04230, 3' end... 50 0.070 1 (BW992620) Cryptomeria japonica cDNA, clone: CC10314, 5' end... 50 0.070 1 (FE967117) PLATE_T3_034_G06_01DEC2004_036 Opium poppy elicit... 50 0.070 1 (FE965945) PLATE_T3_022_A12_02DEC2004_096 Opium poppy elicit... 50 0.070 1 (FE964149) PLATE_T3_002_A09_18NOV2004_079 Opium poppy elicit... 50 0.070 1 (DT777634) 125661147 TH1 Tribolium castaneum cDNA clone 30A1... 36 0.21 2 (DT783939) 127466909 TH1 Tribolium castaneum cDNA clone 125I... 36 0.22 2 (BU275844) Cr_Emb_08E10_TEXF1 Convoluta roscoffensis embryos... 34 0.22 2 (EC588036) H_H9_G05_13 H Rosa hybrid cultivar cDNA clone H9G... 48 0.28 1 (EC587319) H_H26_C05_05 H Rosa hybrid cultivar cDNA clone H2... 48 0.28 1 (DY769897) 72H_new21_O21 Bicyclus anynana wings - 72H pupae ... 48 0.28 1 (DY766775) 24H_new15_G19 Bicyclus anynana wings - 24H pupae ... 48 0.28 1 (DY766535) 24H_new14_M05 Bicyclus anynana wings - 24H pupae ... 48 0.28 1 (CN472625) USDA-FP_121713 Diaprepes abbreviatus, Diaprepes r... 48 0.28 1 (CA994634) Hc_egg_22D08_SKPL Haemonchus contortus egg SL1 fr... 48 0.28 1 (CA994443) Hc_egg_20A01_SKPL Haemonchus contortus egg SL1 fr... 48 0.28 1 (CA994375) Hc_egg_19B09_SKPL Haemonchus contortus egg SL1 fr... 48 0.28 1 (CA994373) Hc_egg_19B07_SKPL Haemonchus contortus egg SL1 fr... 48 0.28 1 (BQ106289) gg1230.e Rose Petals (Golden Gate) Lambda Zap Exp... 48 0.28 1 (BQ105463) gg1547.e Rose Petals (Golden Gate) Lambda Zap Exp... 48 0.28 1 (BI978642) vF04 Old Blush petal SMART library Rosa chinensis... 48 0.28 1 (BI978614) vC10 Old Blush petal SMART library Rosa chinensis... 48 0.28 1 (BI595045) Hc_egg_06F11_SKPL Haemonchus contortus egg SL1 fr... 48 0.28 1 (BF186591) Hc_egg_02C08_SKPL Haemonchus contortus egg SL1 fr... 48 0.28 1 (BF186561) Hc_egg_01H03_SKPL Haemonchus contortus egg SL1 fr... 48 0.28 1 (BF186534) Hc_egg_01E09_SKPL Haemonchus contortus egg SL1 fr... 48 0.28 1 (FE208220) K056A01 Antarctic fish Dissostichus mawsoni adult... 48 0.28 1 (ES894727) LET081_2007-02-10/LET081_G11_042_1 Solanum lycope... 48 0.28 1 (BM872247) mgmy002xG16f.b Magnaporthe grisea MY Uni-Zap XR L... 36 0.79 2 (AF204786) Lycopersicon esculentum ripening regulated protei... 46 1.1 1 (AC212696) Zea mays chromosome 7 clone CH201-241E7; ZMMBBc02... 46 1.1 1 (AC198864) Zea mays chromosome 7 clone CH201-55L22; ZMMBBc00... 46 1.1 1 (AK246886) Solanum lycopersicum cDNA, clone: FC06DA10, HTC i... 46 1.1 1 (EE002736) ROE00013078 Rhizopus oryzae Company Rhizopus oryz... 46 1.1 1 (EE000932) ROE00012982 Rhizopus oryzae Company Rhizopus oryz... 46 1.1 1 (EC745679) PSE00004308 rw_mgpallid Polysphondylium pallidum ... 46 1.1 1 (AI777605) EST258579 tomato susceptible, Cornell Solanum lyc... 46 1.1 1 (BW686661) Solanum lycopersicum cDNA, clone: FC06DA10, 5' en... 46 1.1 1 (BW686003) Solanum lycopersicum cDNA, clone: FC04CG11, 5' en... 46 1.1 1 (BP902636) Solanum lycopersicum cDNA, clone: LB01CD08, 5' en... 46 1.1 1 (BI210551) EST528591 cTOS Solanum lycopersicum cDNA clone cT... 46 1.1 1 (BI208002) EST526042 cTOS Solanum lycopersicum cDNA clone cT... 46 1.1 1 (BG631299) cC-esflcLEL7D14a1 Tomato flower library from a mi... 46 1.1 1 (BG627240) cC-esflcLEL16L160d1 Tomato flower library from a ... 46 1.1 1 (BG132916) EST465808 tomato crown gall Solanum lycopersicum ... 46 1.1 1 (BG132362) EST465254 tomato crown gall Solanum lycopersicum ... 46 1.1 1 (BE344420) EST313600 tomato root, plants pre-anthesis, Corne... 46 1.1 1 (FD449895) EGGA210TR Haematobia irritans eggs Haematobia irr... 46 1.1 1 (FD449894) EGGA210TF Haematobia irritans eggs Haematobia irr... 46 1.1 1 (AW626078) EST319985 tomato radicle, 5 d post-imbibition, Co... 46 1.1 1 (ES893525) LET063_2006-11-03_1/LET063_E07_028_1 Solanum lyco... 46 1.1 1 (CT801985) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 2.0 2 (CT791048) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 2.0 2 (CT747406) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 2.0 2 (CT816563) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 2.0 2 (CT741490) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 2.0 2 (DW124312) CLSX10761.b1_A03.ab1 CLS(XYZ) lettuce sativa Lact... 34 3.0 2 (DW124065) CLSX10509.b1_J11.ab1 CLS(XYZ) lettuce sativa Lact... 34 3.0 2 (EL529941) EST_omor_eva_9094 omoreva mixed_tissue Osmerus mo... 44 4.3 1 (EG012578) STDB002E12u STDB Solanum tuberosum cDNA clone STD... 44 4.3 1 (EC781924) POAL09B03.F Colubridae snake Philodryas olfersii ... 44 4.3 1 (EB626092) AGENCOURT_56938106 D. grimshawi EST Drosophila gr... 44 4.3 1 (EB599979) AGENCOURT_56966353 D. grimshawi EST Drosophila gr... 44 4.3 1
>(BJ445355) Dictyostelium discoideum cDNA clone:ddv59p05, 3' end, single read. Length = 722
Score = 486 bits (245), Expect(2) = e-135 Identities = 245/245 (100%) Strand = Plus / Minus
Query: 22 atcaccacaaagaaatggccaagtcaaagaatcactcaacccatcacaaaaacagaaagg 81 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 302 atcaccacaaagaaatggccaagtcaaagaatcactcaacccatcacaaaaacagaaagg 243
Query: 82 accacagaaacggtattaaaaaagccgtcgtccacaaaaagacctcctcaaaaggtgttg 141 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 242 accacagaaacggtattaaaaaagccgtcgtccacaaaaagacctcctcaaaaggtgttg 183
Query: 142 aattaggtttcgccagaaatcaaagatacgctcgtattggtactgaaatcaaaagatacg 201 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 182 aattaggtttcgccagaaatcaaagatacgctcgtattggtactgaaatcaaaagatacg 123
Query: 202 ttcgtggtgatatgcaagaggtcaaagcccacaaaaacccaagacaaccattaaagacca 261 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122 ttcgtggtgatatgcaagaggtcaaagcccacaaaaacccaagacaaccattaaagacca 63
Query: 262 tcgtc 266 ||||| Sbjct: 62 tcgtc 58
Score = 28.2 bits (14), Expect(2) = e-135 Identities = 14/14 (100%) Strand = Plus / Minus
Query: 1 gttcaaatttattg 14 |||||||||||||| Sbjct: 323 gttcaaatttattg 310
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 98226423 Number of Hits to DB: 295,462,524 Number of extensions: 15488105 Number of successful extensions: 1087215 Number of sequences better than 10.0: 150 Length of query: 430 Length of database: 98,766,808,389 Length adjustment: 23 Effective length of query: 407 Effective length of database: 100,802,567,956 Effective search space: 41026645158092 Effective search space used: 41026645158092 X1: 11 (21.8 bits) S2: 21 (42.1 bits)
|
protein update |
2009. 7.15 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
10 |
VH (FL, L) |
0 |
VF (FL, S) |
1 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |