Homology vs CSM-cDNA |
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Homology vs DNA |
Query= Contig-U15233-1 (Contig-U15233-1Q) /CSM_Contig/Contig-U15233-1Q.Seq.d (216 letters)
Database: ddbj_B 98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(CU928627) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.025 3 (AC207500) Aotus nancymaae clone CH258-412I6, WORKING DRAFT ... 46 0.52 1 (AC203116) Aotus nancymaae clone CH258-5K3, WORKING DRAFT SE... 46 0.52 1 (CK606485) gmrhRww6-13_A01_T7 Soybean root hair subtracted c... 46 0.52 1 (EY369005) CAXA12125.fwd CAXA Helobdella robusta Subtracted ... 46 0.52 1 (EY369004) CAXA12125.rev CAXA Helobdella robusta Subtracted ... 46 0.52 1 (AC137961) Mus musculus chromosome 14, clone RP24-550E9, com... 44 2.1 1 (AC098742) Mus musculus BAC clone RP23-122N2 from 14, comple... 44 2.1 1 (AM482964) Vitis vinifera, whole genome shotgun sequence, co... 44 2.1 1 (AC159681) Bos taurus clone CH240-77E1, WORKING DRAFT SEQUEN... 44 2.1 1 (AC113842) Rattus norvegicus clone CH230-129E6, *** SEQUENCI... 44 2.1 1 (AC107448) Rattus norvegicus clone CH230-218A23, *** SEQUENC... 44 2.1 1 (AC106075) Rattus norvegicus clone CH230-126N13, *** SEQUENC... 44 2.1 1 (AC095924) Rattus norvegicus clone CH230-10J12, WORKING DRAF... 44 2.1 1 (CU928576) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 2.1 1 (AC178037) Strongylocentrotus purpuratus clone R3-3055M23, W... 44 2.1 1 (AC175851) Strongylocentrotus purpuratus clone R3-15K11, WOR... 44 2.1 1 (EK014627) 1092955224141 Global-Ocean-Sampling_GS-31-01-01-1... 44 2.1 1 (AC079318) Homo sapiens chromosome 12 clone RP11-62D5, WORKI... 38 2.8 2 (AL935295) Zebrafish DNA sequence from clone CH211-260C23 in... 34 3.4 4 (AC175307) Bos taurus clone CH240-90J2, WORKING DRAFT SEQUEN... 34 3.9 2 (AC152647) Bos taurus clone CH240-16J20, WORKING DRAFT SEQUE... 34 4.0 2 (CR925725) Zebrafish DNA sequence from clone DKEYP-1D6 in li... 42 4.6 4 (EE704525) AGENCOURT_88876951 NIH_ZGC_27 Danio rerio cDNA cl... 30 5.3 2 (FH356687) CHO_OF4677xk16f1.ab1 CHO_OF4 Nicotiana tabacum ge... 32 5.7 3 (FH356766) CHO_OF4677xk16r1.ab1 CHO_OF4 Nicotiana tabacum ge... 32 6.8 3 (ET170490) MUGQ_CH252P372E22Sp6_CP700_091 CHORI-252 Vervet M... 30 7.5 3 (CU855817) Zebrafish DNA sequence from clone CH73-348M5 in l... 42 8.1 1 (CR388216) Zebrafish DNA sequence from clone CH211-165L2 in ... 42 8.1 1 (AL731805) Mouse DNA sequence from clone RP23-358E19 on chro... 42 8.1 1 (AC136147) Mus musculus BAC clone RP23-18B3 from 8, complete... 42 8.1 1 (AC127350) Mus musculus BAC clone RP23-64P14 from chromosome... 42 8.1 1 (AC202783) Pongo abelii BAC clone CH276-460J20 from chromoso... 42 8.1 1 (AC200570) Pongo abelii BAC clone CH276-450H9 from chromosom... 42 8.1 1 (AC188682) Pan troglodytes BAC clone CH251-579B12 from chrom... 42 8.1 1 (AC186879) Pan troglodytes BAC clone CH251-464L18 from chrom... 42 8.1 1 (AP008213) Oryza sativa (japonica cultivar-group) genomic DN... 42 8.1 1 (AP005451) Oryza sativa Japonica Group genomic DNA, chromoso... 42 8.1 1 (AP005101) Oryza sativa Japonica Group genomic DNA, chromoso... 42 8.1 1 (AM475015) Vitis vinifera contig VV78X040164.7, whole genome... 42 8.1 1 (AC013483) Arabidopsis thaliana chromosome III BAC F17A17 ge... 42 8.1 1 (AC009176) Arabidopsis thaliana chromosome III P1 MLP3 genom... 42 8.1 1 (EA687968) Sequence 66847 from patent US 7365185. 42 8.1 1 (EA652935) Sequence 31814 from patent US 7365185. 42 8.1 1 (AX347195) Sequence 2266 from Patent WO0200928. 42 8.1 1 (AC117080) Dictyostelium discoideum chromosome 2 map complem... 42 8.1 1 (X86437) Homo sapiens PTPA gene for phosphotyrosyl phosphata... 42 8.1 1 (AL158151) Human DNA sequence from clone RP11-247A12 on chro... 42 8.1 1 (AC100770) Homo sapiens chromosome 11, clone RP11-46P12, com... 42 8.1 1 (AC090592) Homo sapiens chromosome 11, clone RP11-405K6, com... 42 8.1 1 (AC153758) Sphenodon punctatus clone VMRC12-460J19, WORKING ... 42 8.1 1 (AC150200) Papio anubis clone RP41-266M11, WORKING DRAFT SEQ... 42 8.1 1 (AC149562) Papio anubis clone RP41-291O3, WORKING DRAFT SEQU... 42 8.1 1 (AC132562) Rattus norvegicus clone CH230-5B7, WORKING DRAFT ... 42 8.1 1 (AC127121) Rattus norvegicus clone CH230-99O3, *** SEQUENCIN... 42 8.1 1 (AC125692) Rattus norvegicus clone CH230-129C2, *** SEQUENCI... 42 8.1 1 (AC117283) Rattus norvegicus clone CH230-375L23, WORKING DRA... 42 8.1 1 (AC106916) Rattus norvegicus clone CH230-59I17, *** SEQUENCI... 42 8.1 1 (AC094815) Rattus norvegicus clone CH230-5J3, WORKING DRAFT ... 42 8.1 1 (AC094611) Rattus norvegicus clone CH230-5A8, WORKING DRAFT ... 42 8.1 1 (CU550672) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 8.1 1 (CU481471) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 8.1 1 (AC211106) Chlorocebus aethiops clone CH252-202K13, WORKING ... 42 8.1 1 (AC208764) Saimiri boliviensis boliviensis clone CH254-324G1... 42 8.1 1 (AC208266) Saimiri boliviensis boliviensis clone CH254-305N1... 42 8.1 1 (AC207149) Nomascus leucogenys leucogenys clone CH271-169F23... 42 8.1 1 (AC202757) Callithrix jacchus clone CH259-330H21, WORKING DR... 42 8.1 1 (AC193840) Colobus guereza clone CH272-5N17, WORKING DRAFT S... 42 8.1 1 (AC193277) Aotus nancymaae clone CH258-479C20, WORKING DRAFT... 42 8.1 1 (AC188895) Aotus nancymaae clone CH258-111K18, WORKING DRAFT... 42 8.1 1 (AC187185) Callicebus moloch clone LB5-257J5, WORKING DRAFT ... 42 8.1 1 (AC186454) Callithrix jacchus clone CH259-22L17, WORKING DRA... 42 8.1 1 (AC184464) Strongylocentrotus purpuratus clone R3-4003I7, WO... 42 8.1 1 (AC182122) Bos taurus clone CH240-496L3, WORKING DRAFT SEQUE... 42 8.1 1 (AC171786) Bos taurus clone CH240-302O24, WORKING DRAFT SEQU... 42 8.1 1 (AC169831) Macaca mulatta clone CH250-34J20, WORKING DRAFT S... 42 8.1 1 (AC169828) Macaca mulatta clone CH250-13E3, WORKING DRAFT SE... 42 8.1 1 (AC025235) Homo sapiens chromosome 11 clone RP11-405K6, WORK... 42 8.1 1 (BH251792) SALK_012140 Arabidopsis thaliana TDNA insertion l... 42 8.1 1 (FH558798) CHO_OF4477xd14r1.ab1 CHO_OF4 Nicotiana tabacum ge... 42 8.1 1 (ET207199) MUGQ_CH252P406M18T7_CP774_067 CHORI-252 Vervet Mo... 42 8.1 1 (ET018388) MUGQ_CH252P324I09Sp6_CP606_039 CHORI-252 Vervet M... 42 8.1 1 (EK230696) 1095460178535 Global-Ocean-Sampling_GS-31-01-01-1... 42 8.1 1 (ED572737) SALK_012140.44.00.x Arabidopsis thaliana TDNA ins... 42 8.1 1 (DU068476) 139008 Tomato HindIII BAC Library Solanum lycoper... 42 8.1 1 (CW773037) OG_BBa0090J08.r OG_BBa Oryza glaberrima genomic c... 42 8.1 1 (CL799037) OR_CBa0010B13.r OR_CBa Oryza rufipogon genomic cl... 42 8.1 1 (CL727380) OR_BBa0058A21.f OR_BBa Oryza nivara genomic clone... 42 8.1 1 (CL719686) OR_BBa0047I01.f OR_BBa Oryza nivara genomic clone... 42 8.1 1 (CL492244) SAIL_564_G08.v1 SAIL Collection Arabidopsis thali... 42 8.1 1 (BX148282) Danio rerio genomic clone DKEY-108M7, genomic sur... 42 8.1 1 (DV288944) NAAHI26TF Aedes aegypti - Fat Bodies Normalized (... 42 8.1 1 (DV242102) A2FM916TV Aedes aegypti full length cDNA library,... 42 8.1 1 (DV242032) A2FM916TO Aedes aegypti full length cDNA library,... 42 8.1 1 (DT879658) AGENCOURT_58679162 NIH_ZGC_9 Danio rerio cDNA clo... 42 8.1 1 (CN758094) ID0AAA21BC01RM1 ApMS Acyrthosiphon pisum cDNA clo... 42 8.1 1 (CN757722) ID0AAA20BB01RM1 ApMS Acyrthosiphon pisum cDNA clo... 42 8.1 1 (CK176582) EST765902 BEA Rhipicephalus microplus cDNA clone ... 42 8.1 1 (CJ979859) Bursaphelenchus xylophilus cDNA clone: Bx_K1_15B0... 42 8.1 1 (CF920732) gmrhRww3-01_A03_1_031 Soybean root hair subtracte... 42 8.1 1
>(CU928627) Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-204D4. Length = 180361
Score = 38.2 bits (19), Expect(3) = 0.025 Identities = 22/23 (95%) Strand = Plus / Plus
Query: 14 aaaactttgtaaatccaattgaa 36 |||||||||||||| |||||||| Sbjct: 178708 aaaactttgtaaattcaattgaa 178730
Score = 36.2 bits (18), Expect(3) = 0.025 Identities = 21/22 (95%) Strand = Plus / Plus
Query: 173 atatatacattaaataataatt 194 ||||||||||||||| |||||| Sbjct: 180158 atatatacattaaattataatt 180179
Score = 32.2 bits (16), Expect(3) = 0.025 Identities = 19/20 (95%) Strand = Plus / Plus
Query: 2 gtattaatattcaaaacttt 21 |||||||| ||||||||||| Sbjct: 121489 gtattaatcttcaaaacttt 121508
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 98226423 Number of Hits to DB: 199,378,009 Number of extensions: 14272528 Number of successful extensions: 4236628 Number of sequences better than 10.0: 114 Length of query: 216 Length of database: 98,766,808,389 Length adjustment: 23 Effective length of query: 193 Effective length of database: 100,802,567,956 Effective search space: 19454895615508 Effective search space used: 19454895615508 X1: 11 (21.8 bits) S2: 21 (42.1 bits)
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Homology vs Protein |
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