| Contig-U15230-1 |
| Contig ID |
Contig-U15230-1 |
| Contig update |
2004. 6.11 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
384 |
| Chromosome number (1..6, M) |
1 |
| Chromosome length |
4919822 |
| Start point |
4827243 |
| End point |
4826860 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
2 |
| Number of EST |
1 |
| Link to clone list |
U15230 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.23 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 1.17 |
| Homology vs DNA |
Query= Contig-U15230-1 (Contig-U15230-1Q) /CSM_Contig/Contig-U15230-1Q.Seq.d
(384 letters)
Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU285035) Dictyostelium discoideum gamete cDNA clone:FCL-AB... 523 e-169 2
(M73676) Dictyostelium ecmB gene, 5' end. 383 e-126 2
(DX560009) GH_MBb0073H01f GH_MBb Gossypium hirsutum genomic ... 38 8e-04 3
(AM427698) Vitis vinifera contig VV78X033427.2, whole genome... 46 0.002 2
(BX537294) Zebrafish DNA sequence from clone DKEY-111K10 in ... 54 0.004 1
(AC214337) Pteropus vampyrus clone CH279-48D19, WORKING DRAF... 42 0.007 4
(AC214718) Pteropus vampyrus clone CH279-360L13, WORKING DRA... 42 0.021 5
(CU207336) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 0.031 4
(AX458554) Sequence 100 from Patent WO0246454. 42 0.048 3
(BX530078) Zebrafish DNA sequence from clone DKEYP-88A5 in l... 50 0.062 1
(AM486613) Vitis vinifera, whole genome shotgun sequence, co... 50 0.062 1
(AM088002) Sepia aculeata mitochondrial partial 16S rRNA gen... 50 0.062 1
(AF369113) Sepia aculeata 16S ribosomal RNA gene, partial se... 50 0.062 1
(CT868703) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.062 1
(CR931958) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 50 0.062 1
(AC232455) Brassica rapa subsp. pekinensis clone KBrB018F22,... 50 0.062 1
(EI439968) PV_GBa0035F07.r PV_GBa Phaseolus vulgaris genomic... 50 0.062 1
(BZ390122) EINAQ50TR EI_10_12_KB Entamoeba invadens genomic ... 50 0.062 1
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 34 0.079 6
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 32 0.091 4
(AM434302) Vitis vinifera contig VV78X078371.5, whole genome... 48 0.14 3
(AL109814) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 34 0.14 7
(AC120361) Mus musculus chromosome 14 clone RP24-286F22 map ... 36 0.14 2
(AC125399) Mus musculus BAC clone RP24-245C15 from chromosom... 36 0.14 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 36 0.18 8
(ED738813) GM_WBb0099E05.f GM_WBb Glycine max genomic clone ... 34 0.19 2
(FI258917) CccaBb053-C16JF CccABb Cajanus cajan genomic clon... 36 0.21 2
(AC229951) Mustela putorius furo clone CH237-408K7, WORKING ... 40 0.22 2
(AM462457) Vitis vinifera contig VV78X057786.5, whole genome... 38 0.22 2
(AC232540) Brassica rapa subsp. pekinensis clone KBrH004A02,... 44 0.23 3
(BX323449) Zebrafish DNA sequence from clone DKEYP-115E12 in... 48 0.25 1
(BX293553) Zebrafish DNA sequence from clone CH211-256J2 in ... 48 0.25 1
(AM437565) Vitis vinifera contig VV78X137375.6, whole genome... 48 0.25 1
(BD460593) Diagnosis of Diseases Associated with Cell Cycle. 48 0.25 1
(BD452515) Diagnosis of Diseases Associated with Cell Cycle. 48 0.25 1
(AX252129) Sequence 390 from Patent WO0168911. 48 0.25 1
(AF017104) Homo sapiens chromosome 7 common fragile site, co... 48 0.25 1
(AC093589) Homo sapiens BAC clone RP11-5K10 from 4, complete... 48 0.25 1
(AC016831) Homo sapiens clone RP11-36B6 from 7q31, complete ... 48 0.25 1
(CT030025) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.25 1
(AC226881) Monodelphis domestica clone VMRC18-975J12, WORKIN... 48 0.25 1
(AC010825) Homo sapiens clone RP11-5L11, WORKING DRAFT SEQUE... 48 0.25 1
(EI744748) CHORI520R113B08TR BAC library from the breast cel... 48 0.25 1
(BB300556) Mus musculus adult male corpora quadrigemina cDNA... 48 0.25 1
(EX851860) CBNC9257.fwd CBNC Phycomyces blakesleeanus NRRL15... 48 0.25 1
(EX851188) CBNC8888.fwd CBNC Phycomyces blakesleeanus NRRL15... 48 0.25 1
(EX848972) CBNC7673.fwd CBNC Phycomyces blakesleeanus NRRL15... 48 0.25 1
(EX848270) CBNC7313.fwd CBNC Phycomyces blakesleeanus NRRL15... 48 0.25 1
(EX834141) CBNB4386.fwd CBNB Phycomyces blakesleeanus NRRL15... 48 0.25 1
(AA167214) zp13b09.s1 Stratagene fetal retina 937202 Homo sa... 48 0.25 1
(AA098779) T3948 MVAT4 bloodstream form of serodeme WRATat1.... 48 0.25 1
(AE016877) Bacillus cereus ATCC 14579, complete genome. 48 0.25 1
(AC191319) Zea mays chromosome 9 clone CH201-287F9; ZMMBBc02... 44 0.25 2
(AC179224) Strongylocentrotus purpuratus clone R3-1107A21, W... 34 0.30 5
(AC191916) Spermophilus tridecemlineatus clone VMRC20-378G1,... 40 0.35 4
(FH491530) CHO_OF4518xd02r1.ab1 CHO_OF4 Nicotiana tabacum ge... 36 0.35 2
(FI273451) CccaBb050-G10JF CccABb Cajanus cajan genomic clon... 36 0.36 2
(AM467491) Vitis vinifera contig VV78X031937.11, whole genom... 38 0.38 2
(AM180355) Clostridium difficile 630 complete genome. 36 0.44 2
(AC187787) Zea mays chromosome 2 clone CH201-322E20; ZMMBBc0... 44 0.47 4
(CR762468) Zebrafish DNA sequence from clone DKEY-125M10 in ... 44 0.49 2
(CQ345623) Sequence 19717 from Patent WO0157275. 38 0.52 2
(CQ308910) Sequence 20015 from Patent WO0186003. 38 0.52 2
(CQ271450) Sequence 19711 from Patent WO0157277. 38 0.52 2
(CQ233586) Sequence 20425 from Patent WO0157273. 38 0.52 2
(CQ150281) Sequence 20303 from Patent WO0157276. 38 0.52 2
(CQ111499) Sequence 20358 from Patent WO0157272. 38 0.52 2
(AC197636) Myotis lucifugus clone CH235-58C14, WORKING DRAFT... 44 0.53 4
(AC207184) Zea mays chromosome 9 clone CH201-487E1; ZMMBBc04... 42 0.53 3
(AC128439) Rattus norvegicus clone CH230-206J7, *** SEQUENCI... 32 0.53 2
(AC095129) Rattus norvegicus clone CH230-8E13, WORKING DRAFT... 32 0.53 2
(AC094118) Rattus norvegicus clone CH230-2O2, WORKING DRAFT ... 32 0.53 2
(CU487207) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 0.54 2
(AC171134) Helobdella robusta clone CH306-1A5, complete sequ... 44 0.55 3
(CU928711) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 0.57 5
(DX458627) Cpl00280 Papaya Genomic DNA BAC Library Carica pa... 38 0.59 2
(AC006567) Arabidopsis thaliana BAC T15G18 from chromosome I... 46 0.59 2
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 32 0.67 4
(GD268440) USDA-FP_200194 Asian citrus psyllid testes (Hemip... 36 0.68 3
(BH685293) BOMHP66TR BO_2_3_KB Brassica oleracea genomic clo... 32 0.78 3
(AM451564) Vitis vinifera contig VV78X045102.5, whole genome... 38 0.80 2
(DT468024) GH_CHX21E15.r GH_CHX Gossypium hirsutum cDNA clon... 40 0.89 2
(DT468023) GH_CHX21E15.f GH_CHX Gossypium hirsutum cDNA clon... 40 0.89 2
(AC023681) Drosophila melanogaster X BAC RP98-39P3 (Roswell ... 40 0.89 4
(CU467825) Zebrafish DNA sequence from clone CH211-169C1 in ... 46 0.97 1
(CT027760) Zebrafish DNA sequence from clone CH211-213N8 in ... 46 0.97 1
(CR938717) Zebrafish DNA sequence from clone DKEY-185J5 in l... 46 0.97 1
(BX571772) Zebrafish DNA sequence from clone CH211-238E12 in... 46 0.97 1
(AY791500) Fundulus heteroclitus clone FhATG-B131 microsatel... 46 0.97 1
(AL954708) Zebrafish DNA sequence from clone CH211-160I4. 46 0.97 1
(AL929342) Zebrafish DNA sequence from clone DKEY-225K7 in l... 46 0.97 1
(AC190275) Rhesus Macaque BAC CH250-162B21 () complete sequ... 46 0.97 1
(AL161515) Arabidopsis thaliana DNA chromosome 4, contig fra... 46 0.97 1
(AC189489) Brassica rapa subsp. pekinensis clone KBrB084K02,... 46 0.97 1
(AC149642) Medicago truncatula chromosome 2 clone mth2-62p11... 46 0.97 1
(EA102815) Sequence 198 from patent US 7195870. 46 0.97 1
(CQ580103) Sequence 7861 from Patent WO0171042. 46 0.97 1
(BD453051) Diagnosis of Diseases Associated with tumor suppr... 46 0.97 1
(AX346963) Sequence 2034 from Patent WO0200928. 46 0.97 1
(AX344489) Sequence 336 from Patent WO0200926. 46 0.97 1
>(AU285035) Dictyostelium discoideum gamete cDNA clone:FCL-AB09, 3'
end single read.
Length = 384
Score = 523 bits (264), Expect(2) = e-169
Identities = 264/264 (100%)
Strand = Plus / Plus
Query: 1 gatcaaaggctcctccaaagaaacctaccaccatcgccactaaaaaagctacaacttcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatcaaaggctcctccaaagaaacctaccaccatcgccactaaaaaagctacaacttcaa 60
Query: 61 aatcaaaagtaatcgatgataaaagcagtgatgatgaagttattaaggctccaaccaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatcaaaagtaatcgatgataaaagcagtgatgatgaagttattaaggctccaaccaatc 120
Query: 121 gtccaactcgttcaagagtaccaccacctaaatctttatcatttttagattctgacagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtccaactcgttcaagagtaccaccacctaaatctttatcatttttagattctgacagtg 180
Query: 181 atgatgatgatctttatgataatgaagagtctagttctgatagtgattaaaatatattaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atgatgatgatctttatgataatgaagagtctagttctgatagtgattaaaatatattaa 240
Query: 241 aatattataaaatagtgaaaatta 264
||||||||||||||||||||||||
Sbjct: 241 aatattataaaatagtgaaaatta 264
Score = 107 bits (54), Expect(2) = e-169
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 320 tagtaaaaatctatttaaaattttaaattactcttttgttctttatattcctac 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tagtaaaaatctatttaaaattttaaattactcttttgttctttatattcctac 373
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 475,162,261
Number of extensions: 35036155
Number of successful extensions: 4392290
Number of sequences better than 10.0: 460
Length of query: 384
Length of database: 98,766,808,389
Length adjustment: 23
Effective length of query: 361
Effective length of database: 100,802,567,956
Effective search space: 36389727032116
Effective search space used: 36389727032116
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
|
| protein update |
2009. 7.15 |
| Homology vs Protein |
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
1 |
| FC (DIR, S) |
1 |
| FC-IC (SUB) |
0 |