Contig-U15226-1
Contig ID Contig-U15226-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15226-1 (Contig-U15226-1Q) /CSM_Contig/Contig-U15226-1Q.Seq.d
CGAGCTCNACCCNCGCNCCGGNGAAACCCAAAAGACAAACTATCACATCA
GACATCACAAAACGACAACAAACCCCACCACNAACAACCCCCCCCCCGCG
CGGGTTTTTTTTTTTATATTAATAATAATAATTATAATAGTAATGATGAC
AACGAAAAAATAATTGGAAATAACAATATTTCCACAAATAATAGTAATTT
AATATTATTTAATCAAAATAATAATAATAATAATAATTGCCATGAAGAAA
GATTAGAATGTCAAGTGCCTTTTGAATATATAGATGTGTATGGTAACGCA
GATTTTTCATTTTTAAAATATACAAAGAGGTCAGAATTTAGGAAATATCT
TAAAAAAGCATATAATATAGAAAGTTTATTTGACAAAAGTTTTCGTTTCA
ATAGTATAACTTCATTTCCAACTATAAAATATTACTACTCACTTATTGAA
GATGATGAAAATATAAAGAAAAAAATAAAAGAAGATTCTTATTTATTATT
AGTTTAGAAATAAAAATAAAATAAATAATGTAAATTTCAAAAAAAAAAAA
AAAAGGGGGGGCCCCCCCCGGGGGGGNCCNCCA

Gap no gap
Contig length 583
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 6548160
End point 6547712
Strand (PLUS/MINUS) MINUS
Number of clones 3
Number of EST 3
Link to clone list U15226
List of clone(s)

est1=SSL654Z,1,540
est2=FC-IC0793Z,54,583
est3=SSL654F,170,523
Translated Amino Acid sequence
RAXPXXRXNPKDKLSHQTSQNDNKPHHXQPPPRAGFFFYINNNNYNSNDDNEKIIGNNNI
STNNSNLILFNQNNNNNNNCHEERLECQVPFEYIDVYGNADFSFLKYTKRSEFRKYLKKA
YNIESLFDKSFRFNSITSFPTIKYYYSLIEDDENIKKKIKEDSYLLLV*k*k*nk*ckf


Translated Amino Acid sequence (All Frames)
Frame A:
RAXPXXRXNPKDKLSHQTSQNDNKPHHXQPPPRAGFFFYINNNNYNSNDDNEKIIGNNNI
STNNSNLILFNQNNNNNNNCHEERLECQVPFEYIDVYGNADFSFLKYTKRSEFRKYLKKA
YNIESLFDKSFRFNSITSFPTIKYYYSLIEDDENIKKKIKEDSYLLLV*k*k*nk*ckf


Frame B:
elxprxgetqktnyhirhhktttnpttnnppparvfffiliiiiiivmmttkk*leitif
pqiivi*yylikiiiiiiiamkkd*nvkcllni*mcmvtqifhf*niqrgqnlgnilkkh
ii*kvyltkvfvsiv*lhfql*nitthllkmmki*rkk*kkiliyy*frnknkinnvnf


Frame C:
sstxapxkpkrqtitsditkrqqtppxttppprgfffly****l*****qrknnwk*qyf
hk***fnii*sk******lp*rkirmssaf*iyrcvw*rrffifkiykevri*eis*ksi
*yrkfi*qkfsfq*ynfisnykilllty*r**kykeknkrrflfiisleikik*im*i


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15226-1 (Contig-U15226-1Q)
/CSM_Contig/Contig-U15226-1Q.Seq.d
(538 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15226-1 (Contig-U15226-1Q) /CSM_Contig/Conti... 436 e-122
Contig-U03053-1 (Contig-U03053-1Q) /CSM_Contig/Conti... 38 0.014
Contig-U08172-1 (Contig-U08172-1Q) /CSM_Contig/Conti... 36 0.053
Contig-U15145-1 (Contig-U15145-1Q) /CSM_Contig/Conti... 34 0.21
Contig-U12914-1 (Contig-U12914-1Q) /CSM_Contig/Conti... 34 0.21
Contig-U12429-1 (Contig-U12429-1Q) /CSM_Contig/Conti... 34 0.21
Contig-U11693-1 (Contig-U11693-1Q) /CSM_Contig/Conti... 34 0.21
Contig-U10400-1 (Contig-U10400-1Q) /CSM_Contig/Conti... 34 0.21

>Contig-U15226-1 (Contig-U15226-1Q) /CSM_Contig/Contig-U15226-1Q.Seq.d
Length = 538

Score = 436 bits (220), Expect = e-122
Identities = 220/220 (100%)
Strand = Plus / Plus


Query: 238 tgccatgaagaaagattagaatgtcaagtgccttttgaatatatagatgtgtatggtaac 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tgccatgaagaaagattagaatgtcaagtgccttttgaatatatagatgtgtatggtaac 297


Query: 298 gcagatttttcatttttaaaatatacaaagaggtcagaatttaggaaatatcttaaaaaa 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gcagatttttcatttttaaaatatacaaagaggtcagaatttaggaaatatcttaaaaaa 357


Query: 358 gcatataatatagaaagtttatttgacaaaagttttcgtttcaatagtataacttcattt 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gcatataatatagaaagtttatttgacaaaagttttcgtttcaatagtataacttcattt 417


Query: 418 ccaactataaaatattactactcacttattgaagatgatg 457
||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ccaactataaaatattactactcacttattgaagatgatg 457


Score = 143 bits (72), Expect = 3e-34
Identities = 87/87 (100%)
Strand = Plus / Plus


Query: 1 cgagctcnacccncgcnccggngaaacccaaaagacaaactatcacatcagacatcacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgagctcnacccncgcnccggngaaacccaaaagacaaactatcacatcagacatcacaa 60


Query: 61 aacgacaacaaaccccaccacnaacaa 87
|||||||||||||||||||||||||||
Sbjct: 61 aacgacaacaaaccccaccacnaacaa 87


>Contig-U03053-1 (Contig-U03053-1Q) /CSM_Contig/Contig-U03053-1Q.Seq.d
Length = 336

Score = 38.2 bits (19), Expect = 0.014
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 241 catgaagaaagattagaat 259
|||||||||||||||||||
Sbjct: 116 catgaagaaagattagaat 134


>Contig-U08172-1 (Contig-U08172-1Q) /CSM_Contig/Contig-U08172-1Q.Seq.d
Length = 1818

Score = 36.2 bits (18), Expect = 0.053
Identities = 18/18 (100%)
Strand = Plus / Minus


Query: 303 tttttcatttttaaaata 320
||||||||||||||||||
Sbjct: 1216 tttttcatttttaaaata 1199


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5400
Number of Sequences: 8402
Number of extensions: 5400
Number of successful extensions: 612
Number of sequences better than 10.0: 75
length of query: 538
length of database: 8,075,542
effective HSP length: 16
effective length of query: 522
effective length of database: 7,941,110
effective search space: 4145259420
effective search space used: 4145259420
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.17
Homology vs DNA
Query= Contig-U15226-1 (Contig-U15226-1Q) /CSM_Contig/Contig-U15226-1Q.Seq.d
(538 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C93730) Dictyostelium discoideum slug cDNA, clone SSL654. 432 e-152 2
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117... 432 e-117 1
(AU271830) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 432 e-117 1
(EJ133148) 1092343576177 Global-Ocean-Sampling_GS-27-01-01-1... 36 0.27 2
(BH166933) ENTSY94TR Entamoeba histolytica Sheared DNA Entam... 48 0.35 1
(BH155427) ENTTR28TF Entamoeba histolytica Sheared DNA Entam... 48 0.35 1
(BH134077) ENTOJ31TF Entamoeba histolytica Sheared DNA Entam... 48 0.35 1
(AZ674782) ENTMH21TF Entamoeba histolytica Sheared DNA Entam... 48 0.35 1
(AZ670172) ENTMB06TF Entamoeba histolytica Sheared DNA Entam... 48 0.35 1
(AZ547680) ENTDF95TF Entamoeba histolytica Sheared DNA Entam... 48 0.35 1
(AZ538690) ENTDK22TR Entamoeba histolytica Sheared DNA Entam... 48 0.35 1
(AC211809) Echinops telfairi clone CH238-399B6, WORKING DRAF... 46 1.4 1
(AZ679508) ENTIZ14TF Entamoeba histolytica Sheared DNA Entam... 46 1.4 1
(FF496131) G708P538RC1.T0 Acorn worm normalized gastrula pEx... 46 1.4 1
(AC198061) Pan troglodytes BAC clone CH251-503J1 from chromo... 40 1.9 2
(DU189112) 1098574254717 CHORI-243 Ovis aries genomic clone ... 42 2.2 2
(DU375721) 1098312064849 CHORI-243 Ovis aries genomic clone ... 42 2.5 2
(CU914686) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 2.7 2
(EK119312) 1092963340642 Global-Ocean-Sampling_GS-31-01-01-1... 32 3.6 2
(DH139719) Oryzias latipes Fosmid clone:GOLWFno402_c02, forw... 34 4.2 2
(AC184502) Strongylocentrotus purpuratus clone R3-16L7, WORK... 40 4.6 4
(AC021698) Homo sapiens chromosome 11, clone RP11-430L3, com... 40 5.0 3
(CR933839) Zebrafish DNA sequence from clone DKEY-244A7 in l... 44 5.5 1
(CT009574) Mouse DNA sequence from clone RP23-140H11 on chro... 44 5.5 1
(AC151273) Mus musculus BAC clone RP24-237J7 from chromosome... 44 5.5 1
(EU264061) Oryza sativa Japonica Group endosperm transfer ce... 44 5.5 1
(CT954272) M.truncatula DNA sequence from clone MTH2-46C7 on... 44 5.5 1
(AP008207) Oryza sativa (japonica cultivar-group) genomic DN... 44 5.5 1
(AP003293) Oryza sativa Japonica Group genomic DNA, chromoso... 44 5.5 1
(AP003221) Oryza sativa Japonica Group genomic DNA, chromoso... 44 5.5 1
(AC009231) Homo sapiens BAC clone RP11-350I24 from 2, comple... 44 5.5 1
(AC161919) Bos taurus clone CH240-93C3, WORKING DRAFT SEQUEN... 44 5.5 1
(AC141815) Apis mellifera clone CH224-61C4, WORKING DRAFT SE... 44 5.5 1
(AC141814) Apis mellifera clone CH224-61C3, WORKING DRAFT SE... 44 5.5 1
(CU855965) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.5 1
(AC231248) Choloepus hoffmanni clone CH281-569H2, WORKING DR... 44 5.5 1
(AC231245) Choloepus hoffmanni clone CH281-167B20, WORKING D... 44 5.5 1
(AC230612) Bos taurus clone CH240-503O23, WORKING DRAFT SEQU... 44 5.5 1
(AC229955) Lama pacos clone CH246-239B12, WORKING DRAFT SEQU... 44 5.5 1
(AC196337) Otolemur garnettii clone CH256-493L13, WORKING DR... 44 5.5 1
(AC182900) Bos taurus clone CH240-463M1, WORKING DRAFT SEQUE... 44 5.5 1
(AZ678658) ENTHO47TF Entamoeba histolytica Sheared DNA Entam... 44 5.5 1
(AZ668078) ENTIB33TR Entamoeba histolytica Sheared DNA Entam... 44 5.5 1
(AZ538710) ENTFF53TF Entamoeba histolytica Sheared DNA Entam... 44 5.5 1
(AM608639) Entamoeba invadens IP1 GSS, clone inv090g10.q1k. 44 5.5 1
(CW686429) OG_BBa0044O18.r OG_BBa Oryza glaberrima genomic c... 44 5.5 1
(CT420977) Sus scrofa genomic clone PigE-37M12, genomic surv... 44 5.5 1
(CR341215) mte1-73M18FM1 BAC end, cultivar Jemalong A17 of M... 44 5.5 1
(CR329746) mte1-59C14RM1 BAC end, cultivar Jemalong A17 of M... 44 5.5 1
(CL781944) OR_BBa0097N22.r OR_BBa Oryza nivara genomic clone... 44 5.5 1
(BZ392332) EINAX26TF EI_10_12_KB Entamoeba invadens genomic ... 44 5.5 1
(EG612916) REPROTRACTF093614F20 POSSUM_01-POSSUM-C-REPROTRAC... 44 5.5 1
(EC301391) OVARYF089558C18 POSSUM_01-POSSUM-C-OVARY-2KB Tric... 44 5.5 1
(DX402309) GH__Sa0066H05.b1 Gossypium herbaceum WGS library ... 32 6.9 3
(AE001399) Plasmodium falciparum 3D7 chromosome 2 section 36... 38 7.7 2
(CT533849) A BAC library has been constructed from cultivar ... 34 9.2 2

>(C93730) Dictyostelium discoideum slug cDNA, clone SSL654.
Length = 540

Score = 432 bits (218), Expect(2) = e-152
Identities = 218/218 (100%)
Strand = Plus / Plus


Query: 239 gccatgaagaaagattagaatgtcaagtgccttttgaatatatagatgtgtatggtaacg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gccatgaagaaagattagaatgtcaagtgccttttgaatatatagatgtgtatggtaacg 298


Query: 299 cagatttttcatttttaaaatatacaaagaggtcagaatttaggaaatatcttaaaaaag 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cagatttttcatttttaaaatatacaaagaggtcagaatttaggaaatatcttaaaaaag 358


Query: 359 catataatatagaaagtttatttgacaaaagttttcgtttcaatagtataacttcatttc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 catataatatagaaagtttatttgacaaaagttttcgtttcaatagtataacttcatttc 418


Query: 419 caactataaaatattactactcacttattgaagatgat 456
||||||||||||||||||||||||||||||||||||||
Sbjct: 419 caactataaaatattactactcacttattgaagatgat 456

Score = 143 bits (72), Expect(2) = e-152
Identities = 87/87 (100%)
Strand = Plus / Plus


Query: 1 cgagctcnacccncgcnccggngaaacccaaaagacaaactatcacatcagacatcacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgagctcnacccncgcnccggngaaacccaaaagacaaactatcacatcagacatcacaa 60


Query: 61 aacgacaacaaaccccaccacnaacaa 87
|||||||||||||||||||||||||||
Sbjct: 61 aacgacaacaaaccccaccacnaacaa 87

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 402,474,912
Number of extensions: 27466253
Number of successful extensions: 2482042
Number of sequences better than 10.0: 58
Length of query: 538
Length of database: 98,766,808,389
Length adjustment: 23
Effective length of query: 515
Effective length of database: 100,802,567,956
Effective search space: 51913322497340
Effective search space used: 51913322497340
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.15
Homology vs Protein
Query= Contig-U15226-1 (Contig-U15226-1Q) /CSM_Contig/Contig-U15226-1Q.Seq.d
(538 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q7KWS1) RecName: Full=Uncharacterized protein DDB_G0276289; &A... 152 5e-36
AM910989_200(AM910989|pid:none) Plasmodium knowlesi strain H chr... 33 3.6
CP001034_2248(CP001034|pid:none) Natranaerobius thermophilus JW/... 33 6.1

>(Q7KWS1) RecName: Full=Uncharacterized protein DDB_G0276289;
&AC116924_20(AC116924|pid:none)
Length = 163

Score = 152 bits (384), Expect = 5e-36
Identities = 75/89 (84%), Positives = 75/89 (84%)
Frame = +1

Query: 238 CHEERLECQVPFEYIDVYGNADFSFLKYTKRSEFRKYLKKAYNIESLFDKSFRFNSITSF 417
CHEERLECQVPFEYIDVYGNADFSFLKYTKRSEFRKYLKKAYNIESLFDKSFRFNSITSF
Sbjct: 75 CHEERLECQVPFEYIDVYGNADFSFLKYTKRSEFRKYLKKAYNIESLFDKSFRFNSITSF 134

Query: 418 PTIKYYYSLXXXXXXXXXXXXXXSYLLLV 504
PTIKYYYSL SYLLLV
Sbjct: 135 PTIKYYYSLIEDDENIKKKIKEDSYLLLV 163

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 513,687,032
Number of extensions: 6418339
Number of successful extensions: 13851
Number of sequences better than 10.0: 3
Number of HSP's gapped: 13840
Number of HSP's successfully gapped: 3
Length of query: 179
Length of database: 1,051,180,864
Length adjustment: 120
Effective length of query: 59
Effective length of database: 662,793,784
Effective search space: 39104833256
Effective search space used: 39104833256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

PSORT

psg: 0.55 gvh: 0.17 alm: 0.53 top: 0.53 tms: 0.00 mit: 0.31 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: nuclear
20.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for Contig-U15226-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 1