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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15215-1
Contig ID Contig-U15215-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15215-1 (Contig-U15215-1Q) /CSM_Contig/Contig-U15215-1Q.Seq.d
CACTGTTGGCCTACTGGAGTTTCAACCAAAGCTTTTAATATTAATAAACA
AAATGAACCCAGGTCTCTACGCCGATTTAACCAAACCAACTGCTGATTTC
ATCAAAAAGGATTTCGCAGAAACCTTCAAACTCGATACCACCTTCAAAGG
CAAATATGGTTCAATTGTTGCAGTCACTGATATTAAAGACAGTGGTGTTG
TTGCCTCAATTCAACCAAAAGCTGATTTCACCAAATATCTCGGTAAAGTC
TCAAATGGTAACTTTACTGTCGATACCAATGGTGTAAAGAAAGGTGAATT
CACCATTGAAAATATTATTCCAGGTTTAAAAGCCGTCGCCAATGGTGATT
CAAAACAAAATTTCTCAACCGAATTCCAATATAAAAAAGATAAAATTGCT
TTCACCCTTTTTGGTCACAACAATAAATCCTTCAACACTTCATTAGCTTT
CCTCATTAACCCAACTTTCTCTGTTGGTGTCCAAGCTGAAGGTAACGCCA
AAAACACCCTCAAAAACGTCAACGCCACCATCACCATCAGACCACGTCCA
GACGTCTTTGTTTCAATCGTCGATAGATTCATGGATAAACAAATCCTCTT
ATCCACCCTCTACACTGCCACCTCAAAATTATCCTTTGCTGGTGATGTTA
CTGTCGACCTCAAAGCCTCTGAAAAAGCACCATCATTCAACGTTGGTACC
CAATACAAAATCGATTCCGCCAGTCTCCTCAAAGCTAAAGTTAACAACAA
CAGAAAAGTTAACATCTCTTACATCTACAATACTAGCAACAACACTAAAT
TCGTTTTAGGTTGGAATGTCAATACTAAAAACTTTAAACAAGGCAATACT
TTTGGTGCTACTGTTAACTTAACTCTTTAAATTGTAAACTTTTATTTACA
TTTTTAAAAAGAAAAAAAAAAAAACAAAAATACACCATAAAAATATAAAA
AAAAAATAATAATAGTAAACAATTGTATAATTTTCAAATTTGGTAAAATC
AATTTTTTTCATTTTTACTAAATAATTGGAATAAAAAAAAGAATTTTTAA
TAAAAAAAAAAAAAAAGTAATAATGTATTTTATTTTTTTTTTTTAAAAAC
TTCTAAAAAAAAAAAAA
Gap no gap
Contig length 1117
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 933979
End point 935063
Strand (PLUS/MINUS) PLUS
Number of clones 14
Number of EST 17
Link to clone list U15215
List of clone(s) 

est1=VFL679F,1,616
est2=VFD833F,13,545
est3=VSD191E,20,938
est4=FC-BO09E,27,1117
est5=FC-IC1144F,27,731
est6=FC-IC1144Z,27,698
est7=VHA129F,27,545
est8=VFB643F,28,319
est9=VHF382F,37,710
est10=VSJ651Z,275,899
est11=VSC676Z,367,947
est12=VSB393Z,433,1052
est13=SLI631E,473,1051
est14=VSK433F,548,921
est15=VSK433Z,884,1039
est16=VFD833Z,888,1048
est17=VFB643Z,891,1041
Translated Amino Acid sequence 
TVGLLEFQPKLLILINKMNPGLYADLTKPTADFIKKDFAETFKLDTTFKGKYGSIVAVTD
IKDSGVVASIQPKADFTKYLGKVSNGNFTVDTNGVKKGEFTIENIIPGLKAVANGDSKQN
FSTEFQYKKDKIAFTLFGHNNKSFNTSLAFLINPTFSVGVQAEGNAKNTLKNVNATITIR
PRPDVFVSIVDRFMDKQILLSTLYTATSKLSFAGDVTVDLKASEKAPSFNVGTQYKIDSA
SLLKAKVNNNRKVNISYIYNTSNNTKFVLGWNVNTKNFKQGNTFGATVNLTL*ivnfylh
f*kekkknkntp*kykkkiiivnnciifkfgkinffhfy*iigikkrifnkkkkkvimyf
ifff*kllkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptgvstkafninkqneprslrrfnqtnc*fhqkgfrrnlqtryhlqrqiwfnccsh*
y*rqwccclnstks*fhqisr*slkw*lycryqwcker*ihh*kyysrfksrrqw*fktk
flnripi*kr*ncfhpfwsqq*ilqhfisfph*pnflcwcps*r*rqkhpqkrqrhhhhq
ttsrrlcfnrr*ihg*tnplihplhchlkiilcw*cycrpqsl*kstiiqrwypiqnrfr
qspqs*s*qqqks*hllhlqy*qqh*irfrlecqy*kl*trqyfwcyc*lnslnckllft
flkrkkkkqkytiki*kknnnskqlynfqiw*nqffsfllnnwnkkknf**kkkksnnvf
yffflktskkkk


Frame B:
TVGLLEFQPKLLILINKMNPGLYADLTKPTADFIKKDFAETFKLDTTFKGKYGSIVAVTD
IKDSGVVASIQPKADFTKYLGKVSNGNFTVDTNGVKKGEFTIENIIPGLKAVANGDSKQN
FSTEFQYKKDKIAFTLFGHNNKSFNTSLAFLINPTFSVGVQAEGNAKNTLKNVNATITIR
PRPDVFVSIVDRFMDKQILLSTLYTATSKLSFAGDVTVDLKASEKAPSFNVGTQYKIDSA
SLLKAKVNNNRKVNISYIYNTSNNTKFVLGWNVNTKNFKQGNTFGATVNLTL*ivnfylh
f*kekkknkntp*kykkkiiivnnciifkfgkinffhfy*iigikkrifnkkkkkvimyf
ifff*kllkkkk


Frame C:
llaywsfnqsf*y**tk*tqvstpi*pnqllisskrisqkpsnsippskanmvqllqsli
lktvvllpqfnqklispnisvksqmvtllsipmv*rkvnsplkilfqv*kpspmviqnki
sqpnsnikkikllspflvttinpstlh*lssltqlsllvsklkvtpktpsktstppspsd
hvqtslfqssidswinkssyppstlppqnypllvmllstskplkkhhhstlvpntksipp
vssklkltttekltsltstilattlnsf*vgmsilktlnkaillvlllt*lfkl*tfiyi
fkkkkkktkihhknikkk****tiv*fsnlvksiffiftk*le*kkeflikkkkk**cil
ffffknf*kkk
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15215-1 (Contig-U15215-1Q)
/CSM_Contig/Contig-U15215-1Q.Seq.d
         (1117 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15215-1 (Contig-U15215-1Q) /CSM_Contig/Conti...  1794  0.0
Contig-U04573-1 (Contig-U04573-1Q) /CSM_Contig/Conti...    48  3e-05
Contig-U11492-1 (Contig-U11492-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U16449-1 (Contig-U16449-1Q) /CSM_Contig/Conti...    44  5e-04
Contig-U15401-1 (Contig-U15401-1Q) /CSM_Contig/Conti...    44  5e-04
Contig-U15177-1 (Contig-U15177-1Q) /CSM_Contig/Conti...    44  5e-04
Contig-U05739-1 (Contig-U05739-1Q) /CSM_Contig/Conti...    44  5e-04
Contig-U04798-1 (Contig-U04798-1Q) /CSM_Contig/Conti...    44  5e-04
Contig-U13517-1 (Contig-U13517-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U07080-1 (Contig-U07080-1Q) /CSM_Contig/Conti...    42  0.002

>Contig-U15215-1 (Contig-U15215-1Q) /CSM_Contig/Contig-U15215-1Q.Seq.d
          Length = 1117

 Score = 1794 bits (905), Expect = 0.0
 Identities = 905/905 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactgttggcctactggagtttcaaccaaagcttttaatattaataaacaaaatgaaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cactgttggcctactggagtttcaaccaaagcttttaatattaataaacaaaatgaaccc 60

                                                                       
Query: 61  aggtctctacgccgatttaaccaaaccaactgctgatttcatcaaaaaggatttcgcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aggtctctacgccgatttaaccaaaccaactgctgatttcatcaaaaaggatttcgcaga 120

                                                                       
Query: 121 aaccttcaaactcgataccaccttcaaaggcaaatatggttcaattgttgcagtcactga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaccttcaaactcgataccaccttcaaaggcaaatatggttcaattgttgcagtcactga 180

                                                                       
Query: 181 tattaaagacagtggtgttgttgcctcaattcaaccaaaagctgatttcaccaaatatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tattaaagacagtggtgttgttgcctcaattcaaccaaaagctgatttcaccaaatatct 240

                                                                       
Query: 241 cggtaaagtctcaaatggtaactttactgtcgataccaatggtgtaaagaaaggtgaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cggtaaagtctcaaatggtaactttactgtcgataccaatggtgtaaagaaaggtgaatt 300

                                                                       
Query: 301 caccattgaaaatattattccaggtttaaaagccgtcgccaatggtgattcaaaacaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caccattgaaaatattattccaggtttaaaagccgtcgccaatggtgattcaaaacaaaa 360

                                                                       
Query: 361 tttctcaaccgaattccaatataaaaaagataaaattgctttcaccctttttggtcacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tttctcaaccgaattccaatataaaaaagataaaattgctttcaccctttttggtcacaa 420

                                                                       
Query: 421 caataaatccttcaacacttcattagctttcctcattaacccaactttctctgttggtgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 caataaatccttcaacacttcattagctttcctcattaacccaactttctctgttggtgt 480

                                                                       
Query: 481 ccaagctgaaggtaacgccaaaaacaccctcaaaaacgtcaacgccaccatcaccatcag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ccaagctgaaggtaacgccaaaaacaccctcaaaaacgtcaacgccaccatcaccatcag 540

                                                                       
Query: 541 accacgtccagacgtctttgtttcaatcgtcgatagattcatggataaacaaatcctctt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 accacgtccagacgtctttgtttcaatcgtcgatagattcatggataaacaaatcctctt 600

                                                                       
Query: 601 atccaccctctacactgccacctcaaaattatcctttgctggtgatgttactgtcgacct 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 atccaccctctacactgccacctcaaaattatcctttgctggtgatgttactgtcgacct 660

                                                                       
Query: 661 caaagcctctgaaaaagcaccatcattcaacgttggtacccaatacaaaatcgattccgc 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 caaagcctctgaaaaagcaccatcattcaacgttggtacccaatacaaaatcgattccgc 720

                                                                       
Query: 721 cagtctcctcaaagctaaagttaacaacaacagaaaagttaacatctcttacatctacaa 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 cagtctcctcaaagctaaagttaacaacaacagaaaagttaacatctcttacatctacaa 780

                                                                       
Query: 781 tactagcaacaacactaaattcgttttaggttggaatgtcaatactaaaaactttaaaca 840
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tactagcaacaacactaaattcgttttaggttggaatgtcaatactaaaaactttaaaca 840

                                                                       
Query: 841 aggcaatacttttggtgctactgttaacttaactctttaaattgtaaacttttatttaca 900
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 aggcaatacttttggtgctactgttaacttaactctttaaattgtaaacttttatttaca 900

                
Query: 901 ttttt 905
           |||||
Sbjct: 901 ttttt 905


 Score =  109 bits (55), Expect = 9e-24
 Identities = 69/76 (90%)
 Strand = Plus / Plus

                                                                        
Query: 957  taataatagtaaacaattgtataattttcaaatttggtaaaatcaannnnnnncattttt 1016
            ||||||||||||||||||||||||||||||||||||||||||||||       |||||||
Sbjct: 957  taataatagtaaacaattgtataattttcaaatttggtaaaatcaatttttttcattttt 1016

                            
Query: 1017 actaaataattggaat 1032
            ||||||||||||||||
Sbjct: 1017 actaaataattggaat 1032


 Score = 75.8 bits (38), Expect = 1e-13
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                  
Query: 1067 gtaataatgtattttattttttttttttaaaaacttct 1104
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 1067 gtaataatgtattttattttttttttttaaaaacttct 1104


>Contig-U04573-1 (Contig-U04573-1Q) /CSM_Contig/Contig-U04573-1Q.Seq.d
          Length = 419

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 1076 tattttattttttttttttaaaaa 1099
            ||||||||||||||||||||||||
Sbjct: 269  tattttattttttttttttaaaaa 292


 Score = 36.2 bits (18), Expect = 0.11
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 1078 ttttattttttttttttaaaaa 1099
            |||| |||||||||||||||||
Sbjct: 304  tttttttttttttttttaaaaa 283


>Contig-U11492-1 (Contig-U11492-1Q) /CSM_Contig/Contig-U11492-1Q.Seq.d
          Length = 997

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 1077 attttattttttttttttaaaaa 1099
            |||||||||||||||||||||||
Sbjct: 324  attttattttttttttttaaaaa 346


 Score = 34.2 bits (17), Expect = 0.45
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 1083 ttttttttttttaaaaa 1099
            |||||||||||||||||
Sbjct: 353  ttttttttttttaaaaa 337


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 128,719
Number of Sequences: 8402
Number of extensions: 128719
Number of successful extensions: 65396
Number of sequences better than 10.0: 3253
length of query: 1117
length of database: 8,075,542
effective HSP length: 16
effective length of query: 1101
effective length of database: 7,941,110
effective search space: 8743162110
effective search space used: 8743162110
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.16
Homology vs DNA 
Query= Contig-U15215-1 (Contig-U15215-1Q) /CSM_Contig/Contig-U15215-1Q.Seq.d
         (1117 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(M96668) Dictyostelium discoideum porin mRNA, complete cds.      1740   0.0    1
(AU284881) Dictyostelium discoideum gamete cDNA clone:FC-BO0...  1735   0.0    1
(AC115682) Dictyostelium discoideum chromosome 2 map 4101105...  1477   0.0    1
(BJ421121) Dictyostelium discoideum cDNA clone:ddv41d21, 5' ...  1336   0.0    1
(AU272179) Dictyostelium discoideum gamete cDNA clone:FC-IC1...  1324   0.0    1
(AU272178) Dictyostelium discoideum gamete cDNA clone:FC-IC1...  1231   0.0    2
(BJ416087) Dictyostelium discoideum cDNA clone:ddv24m20, 5' ...  1203   0.0    1
(AU270259) Dictyostelium discoideum vegetative cDNA clone:VS...  1170   0.0    2
(AU262718) Dictyostelium discoideum vegetative cDNA clone:VS...  1045   0.0    1
(BJ412393) Dictyostelium discoideum cDNA clone:ddv8b10, 5' e...  1039   0.0    1
(BJ418010) Dictyostelium discoideum cDNA clone:ddv31i07, 5' ...  1027   0.0    1
(AU263625) Dictyostelium discoideum vegetative cDNA clone:VS...  1025   0.0    1
(AU261997) Dictyostelium discoideum vegetative cDNA clone:VS...   938   0.0    2
(AU263626) Dictyostelium discoideum vegetative cDNA clone:VS...   731   0.0    1
(AU271187) Dictyostelium discoideum vegetative cDNA clone:VS...   710   0.0    1
(AU053428) Dictyostelium discoideum slug cDNA, clone SLI631.      642   0.0    2
(AU062239) Dictyostelium discoideum slug cDNA, clone SLI631.      597   e-166  1
(BJ411408) Dictyostelium discoideum cDNA clone:ddv4e12, 5' e...   579   e-161  1
(AU271188) Dictyostelium discoideum vegetative cDNA clone:VS...    76   3e-09  1
(BJ430674) Dictyostelium discoideum cDNA clone:ddv8b10, 3' e...    76   3e-09  1
(BJ429634) Dictyostelium discoideum cDNA clone:ddv4e12, 3' e...    76   3e-09  1
(BD099539) Novel genes cloned in humanneuroblastoma and frag...    40   0.014  2
(BD019601) Novel gene and novel gene fragment cloned in huma...    40   0.014  2
(CJ464807) Macaca fascicularis mRNA, clone: QnpA-13666, 5' e...    44   0.029  3
(CJ431019) Macaca fascicularis mRNA, clone: QbsA-11292, 5' e...    34   0.14   2
(BJ363472) Dictyostelium discoideum cDNA clone:ddc26h22, 5' ...    48   0.15   2
(CJ482368) Macaca fascicularis mRNA, clone: QtrA-18291, 5' e...    42   0.19   2
(EJ330065) 1092963427616 Global-Ocean-Sampling_GS-28-01-01-1...    50   0.19   1
(EJ083977) 1095460076212 Global-Ocean-Sampling_GS-26-01-01-1...    50   0.19   1
(CJ471972) Macaca fascicularis mRNA, clone: QorA-11708, 5' e...    50   0.19   1
(CJ451495) Macaca fascicularis mRNA, clone: QflA-17106, 5' e...    40   0.20   2
(CJ481051) Macaca fascicularis mRNA, clone: QtrA-16645, 5' e...    36   0.39   3
(CJ450147) Macaca fascicularis mRNA, clone: QflA-15691, 5' e...    36   0.40   3
(CU467075) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   0.65   3
(CJ438039) Macaca fascicularis mRNA, clone: QccE-15239, 5' e...    36   0.70   2
(CJ465465) Macaca fascicularis mRNA, clone: QnpA-14569, 5' e...    40   0.70   2
(CJ463346) Macaca fascicularis mRNA, clone: QnpA-11561, 5' e...    40   0.70   2
(CJ463381) Macaca fascicularis mRNA, clone: QnpA-11638, 5' e...    40   0.71   2
(CJ463110) Macaca fascicularis mRNA, clone: QnpA-11179, 5' e...    40   0.71   2
(CJ435695) Macaca fascicularis mRNA, clone: QccE-12753, 5' e...    42   0.71   2
(CJ433981) Macaca fascicularis mRNA, clone: QccE-10954, 5' e...    40   0.71   2
(CJ463789) Macaca fascicularis mRNA, clone: QnpA-12231, 5' e...    40   0.71   2
(CJ453123) Macaca fascicularis mRNA, clone: QflA-18810, 5' e...    42   0.73   2
(CJ477541) Macaca fascicularis mRNA, clone: QtrA-12387, 5' e...    40   0.73   2
(CJ455543) Macaca fascicularis mRNA, clone: QflA-21331, 5' e...    40   0.73   2
(CJ449959) Macaca fascicularis mRNA, clone: QflA-15495, 5' e...    40   0.73   2
(CJ449263) Macaca fascicularis mRNA, clone: QflA-14771, 5' e...    40   0.74   2
(CJ481646) Macaca fascicularis mRNA, clone: QtrA-17354, 5' e...    40   0.74   2
(CJ478830) Macaca fascicularis mRNA, clone: QtrA-14016, 5' e...    40   0.74   2
(AC178285) Strongylocentrotus purpuratus clone R3-3094B04, W...    48   0.75   1
(AC173980) Strongylocentrotus purpuratus clone R3-14E12, WOR...    48   0.75   1
(EK068171) 1092960152632 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.75   1
(EJ304365) 1095390067532 Global-Ocean-Sampling_GS-27-01-01-1...    48   0.75   1
(BZ048790) jnr53f12.g1 B.oleracea001 Brassica oleracea genom...    48   0.75   1
(DT319968) SusFleck_BF_0017_0020_5_pCNS_P11 SusFleck Backfat...    48   0.75   1
(CK442102) GQ0011.TB_K13 GQ001: Male strobili developmental ...    48   0.75   1
(CJ492652) Macaca fascicularis mRNA, clone: QtsA-20640, 5' e...    48   0.75   1
(CJ466444) Macaca fascicularis mRNA, clone: QnpA-15812, 5' e...    48   0.75   1
(CJ455011) Macaca fascicularis mRNA, clone: QflA-20775, 5' e...    48   0.75   1
(CJ448522) Macaca fascicularis mRNA, clone: QflA-13901, 5' e...    40   0.75   2
(CJ449257) Macaca fascicularis mRNA, clone: QflA-14765, 5' e...    40   0.75   2
(CJ445678) Macaca fascicularis mRNA, clone: QflA-10831, 5' e...    40   0.76   2
(CJ444976) Macaca fascicularis mRNA, clone: QflA-10101, 5' e...    40   0.77   2
(CJ465782) Macaca fascicularis mRNA, clone: QnpA-14924, 5' e...    34   1.4    3
(BX520841) RZPD Mus musculus cDNA clone IMAGp998E045087 = IM...    40   1.9    2
(CJ440092) Macaca fascicularis mRNA, clone: QccE-17388, 5' e...    42   2.6    2
(CJ483772) Macaca fascicularis mRNA, clone: QtsA-11282, 5' e...    40   2.6    2
(CJ456181) Macaca fascicularis mRNA, clone: QflA-22006, 5' e...    38   2.6    2
(CJ452853) Macaca fascicularis mRNA, clone: QflA-18528, 5' e...    40   2.6    2
(CJ463406) Macaca fascicularis mRNA, clone: QnpA-11671, 5' e...    38   2.6    2
(CJ463891) Macaca fascicularis mRNA, clone: QnpA-12371, 5' e...    38   2.6    2
(CJ456913) Macaca fascicularis mRNA, clone: QflA-22767, 5' e...    38   2.7    2
(CJ433709) Macaca fascicularis mRNA, clone: QccE-10670, 5' e...    38   2.7    2
(AC017116) Homo sapiens BAC clone CTD-2518K21 from 7, comple...    38   2.7    3
(CJ452745) Macaca fascicularis mRNA, clone: QflA-18415, 5' e...    36   2.7    2
(CJ468580) Macaca fascicularis mRNA, clone: QnpA-18463, 5' e...    42   2.7    2
(CJ458470) Macaca fascicularis mRNA, clone: QmoA-10468, 5' e...    38   2.8    2
(CJ447935) Macaca fascicularis mRNA, clone: QflA-13286, 5' e...    38   2.8    2
(CJ442471) Macaca fascicularis mRNA, clone: QccE-19986, 5' e...    38   2.8    2
(CJ447982) Macaca fascicularis mRNA, clone: QflA-13337, 5' e...    38   2.8    2
(CJ445730) Macaca fascicularis mRNA, clone: QflA-10883, 5' e...    38   2.8    2
(CJ443411) Macaca fascicularis mRNA, clone: QccE-20967, 5' e...    38   2.8    2
(CJ444715) Macaca fascicularis mRNA, clone: QccE-22327, 5' e...    44   2.9    2
(AC112063) Rattus norvegicus clone CH230-240L7, *** SEQUENCI...    46   2.9    1
(AC094992) Rattus norvegicus clone CH230-6F3, *** SEQUENCING...    46   2.9    1
(CU222532) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.9    1
(DU106976) JBnY022I16R Brassica napus BAC library JBnY Brass...    46   2.9    1
(CJ492377) Macaca fascicularis mRNA, clone: QtsA-20352, 5' e...    46   2.9    1
(CJ491829) Macaca fascicularis mRNA, clone: QtsA-19780, 5' e...    46   2.9    1
(CJ489447) Macaca fascicularis mRNA, clone: QtsA-17196, 5' e...    46   2.9    1
(CJ486094) Macaca fascicularis mRNA, clone: QtsA-13707, 5' e...    46   2.9    1
(CJ483606) Macaca fascicularis mRNA, clone: QtsA-11094, 5' e...    46   2.9    1
(CJ483266) Macaca fascicularis mRNA, clone: QtsA-10727, 5' e...    46   2.9    1
(CJ482045) Macaca fascicularis mRNA, clone: QtrA-17834, 5' e...    46   2.9    1
(CJ481101) Macaca fascicularis mRNA, clone: QtrA-16708, 5' e...    46   2.9    1
(CJ479484) Macaca fascicularis mRNA, clone: QtrA-14805, 5' e...    46   2.9    1
(CJ478653) Macaca fascicularis mRNA, clone: QtrA-13805, 5' e...    46   2.9    1
(CJ478369) Macaca fascicularis mRNA, clone: QtrA-13418, 5' e...    46   2.9    1
(CJ476816) Macaca fascicularis mRNA, clone: QtrA-11344, 5' e...    46   2.9    1
(CJ476557) Macaca fascicularis mRNA, clone: QtrA-10969, 5' e...    46   2.9    1

>(M96668) Dictyostelium discoideum porin mRNA, complete cds.
          Length = 1128

 Score = 1741 bits (878), Expect = 0.0
 Identities = 878/878 (100%)
 Strand = Plus / Plus


Query: 28  aaagcttttaatattaataaacaaaatgaacccaggtctctacgccgatttaaccaaacc 87
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaagcttttaatattaataaacaaaatgaacccaggtctctacgccgatttaaccaaacc 60


Query: 88  aactgctgatttcatcaaaaaggatttcgcagaaaccttcaaactcgataccaccttcaa 147
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aactgctgatttcatcaaaaaggatttcgcagaaaccttcaaactcgataccaccttcaa 120


Query: 148 aggcaaatatggttcaattgttgcagtcactgatattaaagacagtggtgttgttgcctc 207
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aggcaaatatggttcaattgttgcagtcactgatattaaagacagtggtgttgttgcctc 180


Query: 208 aattcaaccaaaagctgatttcaccaaatatctcggtaaagtctcaaatggtaactttac 267
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aattcaaccaaaagctgatttcaccaaatatctcggtaaagtctcaaatggtaactttac 240


Query: 268 tgtcgataccaatggtgtaaagaaaggtgaattcaccattgaaaatattattccaggttt 327
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgtcgataccaatggtgtaaagaaaggtgaattcaccattgaaaatattattccaggttt 300


Query: 328 aaaagccgtcgccaatggtgattcaaaacaaaatttctcaaccgaattccaatataaaaa 387
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaaagccgtcgccaatggtgattcaaaacaaaatttctcaaccgaattccaatataaaaa 360


Query: 388 agataaaattgctttcaccctttttggtcacaacaataaatccttcaacacttcattagc 447
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agataaaattgctttcaccctttttggtcacaacaataaatccttcaacacttcattagc 420


Query: 448 tttcctcattaacccaactttctctgttggtgtccaagctgaaggtaacgccaaaaacac 507
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tttcctcattaacccaactttctctgttggtgtccaagctgaaggtaacgccaaaaacac 480


Query: 508 cctcaaaaacgtcaacgccaccatcaccatcagaccacgtccagacgtctttgtttcaat 567
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cctcaaaaacgtcaacgccaccatcaccatcagaccacgtccagacgtctttgtttcaat 540


Query: 568 cgtcgatagattcatggataaacaaatcctcttatccaccctctacactgccacctcaaa 627
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cgtcgatagattcatggataaacaaatcctcttatccaccctctacactgccacctcaaa 600


Query: 628 attatcctttgctggtgatgttactgtcgacctcaaagcctctgaaaaagcaccatcatt 687
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 attatcctttgctggtgatgttactgtcgacctcaaagcctctgaaaaagcaccatcatt 660


Query: 688 caacgttggtacccaatacaaaatcgattccgccagtctcctcaaagctaaagttaacaa 747
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 caacgttggtacccaatacaaaatcgattccgccagtctcctcaaagctaaagttaacaa 720


Query: 748 caacagaaaagttaacatctcttacatctacaatactagcaacaacactaaattcgtttt 807
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 caacagaaaagttaacatctcttacatctacaatactagcaacaacactaaattcgtttt 780


Query: 808 aggttggaatgtcaatactaaaaactttaaacaaggcaatacttttggtgctactgttaa 867
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 aggttggaatgtcaatactaaaaactttaaacaaggcaatacttttggtgctactgttaa 840


Query: 868 cttaactctttaaattgtaaacttttatttacattttt 905
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 841 cttaactctttaaattgtaaacttttatttacattttt 878

 Score = 75.8 bits (38), Expect = 3e-09
 Identities = 38/38 (100%)
 Strand = Plus / Plus


Query: 957 taataatagtaaacaattgtataattttcaaatttggt 994
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 929 taataatagtaaacaattgtataattttcaaatttggt 966

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 1,156,538,938
Number of extensions: 69185040
Number of successful extensions: 6040603
Number of sequences better than 10.0: 178
Length of query: 1117
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 1093
Effective length of database: 100,704,341,533
Effective search space: 110069845295569
Effective search space used: 110069845295569
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.15
Homology vs Protein 
Query= Contig-U15215-1 (Contig-U15215-1Q) /CSM_Contig/Contig-U15215-1Q.Seq.d
         (1117 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q01501) RecName: Full=Mitochondrial outer membrane protein pori...   545   e-153
AY835404_1(AY835404|pid:none) Brassica napus clone BnY2H23 porin...    69   3e-10
BT052614_1(BT052614|pid:none) Medicago truncatula clone MTYFD_FE...    67   1e-09
AY316740_1(AY316740|pid:none) Lotus corniculatus var. japonicus ...    64   7e-09
AF139498_1(AF139498|pid:none) Prunus armeniaca porin (mPOR) mRNA...    62   4e-08
X94305_1(X94305|pid:none) S.tuberosum mRNA for POM30 protein.          62   4e-08
AB286176_1(AB286176|pid:none) Nicotiana tabacum NtVDAC1 mRNA for...    61   6e-08
EF146163_1(EF146163|pid:none) Populus trichocarpa clone WS0115_O...    61   8e-08
AB013390_5(AB013390|pid:none) Arabidopsis thaliana genomic DNA, ...    60   1e-07
AF178951_1(AF178951|pid:none) Zea mays voltage-dependent anion c...    58   5e-07
(P42055) RecName: Full=Mitochondrial outer membrane protein pori...    57   9e-07
B55017(B55017)porin, plastid - garden pea                              57   1e-06
AC097112_9(AC097112|pid:none) Oryza sativa (japonica cultivar-gr...    57   1e-06
AK121020_1(AK121020|pid:none) Oryza sativa Japonica Group cDNA c...    57   2e-06
DQ294272_1(DQ294272|pid:none) Solanum tuberosum clone 154C04 34 ...    56   2e-06
AY316739_1(AY316739|pid:none) Lotus corniculatus var. japonicus ...    56   2e-06
DQ296180_1(DQ296180|pid:none) Brassica rapa clone 219 unknown mR...    56   3e-06
(Q6K548) RecName: Full=Mitochondrial outer membrane protein pori...    55   3e-06
AY316738_1(AY316738|pid:none) Lotus corniculatus var. japonicus ...    55   4e-06
BT040323_1(BT040323|pid:none) Zea mays full-length cDNA clone ZM...    55   4e-06
(P42056) RecName: Full=Mitochondrial outer membrane protein pori...    54   8e-06
T09116(T09116) voltage-dependent anion channel protein - spinach...    54   1e-05
AK339802_1(AK339802|pid:none) Acyrthosiphon pisum ACYPI000248 mR...    53   2e-05
AB286177_1(AB286177|pid:none) Nicotiana tabacum NtVDAC2 mRNA for...    53   2e-05
C55364(C55364;B55364) porin (clone pPOM 36.1) - potato mitochond...    52   3e-05
AM456269_3(AM456269|pid:none) Vitis vinifera contig VV78X008391....    52   5e-05
EF146047_1(EF146047|pid:none) Populus trichocarpa clone WS0115_C...    51   8e-05
AY526084_1(AY526084|pid:none) Brassica rapa subsp. pekinensis vo...    51   8e-05
AB331962_1(AB331962|pid:none) Glycine max mRNA for peroxisomal v...    50   1e-04
AY087979_1(AY087979|pid:none) Arabidopsis thaliana clone 40102 m...    50   1e-04
AY463799_1(AY463799|pid:none) Brassica rapa voltage-dependent an...    50   1e-04
AB262088_1(AB262088|pid:none) Crassostrea gigas VDAC mRNA for vo...    50   1e-04
S59545(S59545;S42097)porin (clone Tavdac1) - wheat                     50   1e-04
AY316737_1(AY316737|pid:none) Lotus corniculatus var. japonicus ...    48   7e-04
BT078043_1(BT078043|pid:none) Lepeophtheirus salmonis Pacific fo...    47   0.001
EU953546_1(EU953546|pid:none) Zea mays clone 1432581 outer plast...    47   0.002
BT041662_1(BT041662|pid:none) Zea mays full-length cDNA clone ZM...    46   0.002
BT083674_1(BT083674|pid:none) Zea mays full-length cDNA clone ZM...    46   0.003
AB011482_6(AB011482|pid:none) Arabidopsis thaliana genomic DNA, ...    46   0.003
BC087828_1(BC087828|pid:none) Xenopus tropicalis voltage-depende...    45   0.004
S59547(S59547;S49474) porin VDAC3 - wheat  &X82148_1(X82148|pid:...    45   0.005
X92408_1(X92408|pid:none) D.melanogaster mRNA for mitochondrial ...    45   0.005
FN392320_916(FN392320|pid:none) Pichia pastoris GS115 chromosome...    45   0.005
(P42057) RecName: Full=Outer plastidial membrane protein porin; ...    45   0.006
AF221690_1(AF221690|pid:none) Squalus acanthias voltage-dependen...    44   0.008
AY588068_1(AY588068|pid:none) Homalodisca coagulata putative mit...    44   0.010
CP001184_493(CP001184|pid:none) Ureaplasma urealyticum serovar 1...    44   0.014
DQ445537_1(DQ445537|pid:none) Graphocephala atropunctata isolate...    43   0.018
AJ251563_1(AJ251563|pid:none) Oryza sativa mRNA for voltage-depe...    42   0.030
BC071123_1(BC071123|pid:none) Xenopus laevis MGC81430 protein, m...    42   0.030
AK060148_1(AK060148|pid:none) Oryza sativa Japonica Group cDNA c...    42   0.039
BT077582_1(BT077582|pid:none) Lepeophtheirus salmonis Pacific fo...    42   0.051
DQ821474_1(DQ821474|pid:none) Paralichthys olivaceus voltage-dep...    41   0.067
BC046577_1(BC046577|pid:none) Xenopus laevis voltage-dependent a...    41   0.067
BC135545_1(BC135545|pid:none) Xenopus tropicalis voltage-depende...    41   0.088
CR760826_1(CR760826|pid:none) Xenopus tropicalis finished cDNA, ...    41   0.088
CP000542_1331(CP000542|pid:none) Verminephrobacter eiseniae EF01...    40   0.11
AY082909_1(AY082909|pid:none) Anopheles gambiae porin mRNA, comp...    40   0.15
DQ440237_1(DQ440237|pid:none) Aedes aegypti clone AET-2852 mitoc...    40   0.15
FM992688_381(FM992688|pid:none) Candida dubliniensis CD36 chromo...    40   0.19
AF093538_1(AF093538|pid:none) Zea mays voltage-dependent anion-s...    40   0.19
BC046013_1(BC046013|pid:none) Danio rerio zgc:56235, mRNA (cDNA ...    39   0.25
AL954172_4(AL954172|pid:none) Zebrafish DNA sequence from clone ...    39   0.33
CP000542_4055(CP000542|pid:none) Verminephrobacter eiseniae EF01...    39   0.43
BC065468_1(BC065468|pid:none) Danio rerio voltage-dependent anio...    39   0.43
CP000943_485(CP000943|pid:none) Methylobacterium sp. 4-46, compl...    39   0.43
BT043566_1(BT043566|pid:none) Salmo salar clone HM4_2328 voltage...    38   0.57
AM449989_1(AM449989|pid:none) Vitis vinifera contig VV78X180717....    38   0.74
BT043915_1(BT043915|pid:none) Salmo salar clone HM4_3685 voltage...    37   0.97
BT045295_1(BT045295|pid:none) Salmo salar clone ssal-rgf-517-304...    37   0.97
BC153608_1(BC153608|pid:none) Danio rerio voltage-dependent anio...    37   0.97
AF268470_1(AF268470|pid:none) Gallus gallus voltage-dependent an...    37   0.97
EU482196_1(EU482196|pid:none) Clostridium septicum strain NH9 al...    37   1.3
(Q9TT13) RecName: Full=Voltage-dependent anion-selective channel...    37   1.3
(Q9MZ13) RecName: Full=Voltage-dependent anion-selective channel...    37   1.3
(Q60931) RecName: Full=Voltage-dependent anion-selective channel...    37   1.3
(Q29380) RecName: Full=Voltage-dependent anion-selective channel...    37   1.3
EF215040_1(EF215040|pid:none) Callithrix jacchus clone D21-41.2_...    37   1.3
AK148744_1(AK148744|pid:none) Mus musculus 2 days neonate sympat...    37   1.3
AK146957_1(AK146957|pid:none) Mus musculus 17 days embryo heart ...    37   1.3
AE016830_566(AE016830|pid:none) Enterococcus faecalis V583, comp...    37   1.3
BT046018_1(BT046018|pid:none) Salmo salar clone ssal-rgf-539-158...    37   1.3
BC146149_1(BC146149|pid:none) Bos taurus voltage-dependent anion...    37   1.3
AL132965_27(AL132965|pid:none) Arabidopsis thaliana DNA chromoso...    37   1.3
(Q9P544) RecName: Full=Probable mitochondrial outer membrane pro...    37   1.3
AK161283_1(AK161283|pid:none) Mus musculus adult male testis cDN...    37   1.7
(P81004) RecName: Full=Voltage-dependent anion-selective channel...    37   1.7
CP001393_2278(CP001393|pid:none) Anaerocellum thermophilum DSM 6...    37   1.7
BC094145_1(BC094145|pid:none) Xenopus laevis Voltage-dependent a...    37   1.7
BC061780_1(BC061780|pid:none) Rattus norvegicus voltage-dependen...    37   1.7
AF048830_1(AF048830|pid:none) Rattus norvegicus voltage dependen...    37   1.7
BT074579_1(BT074579|pid:none) Osmerus mordax clone omor-eva-508-...    36   2.2
AE014134_2055(AE014134|pid:none) Drosophila melanogaster chromos...    36   2.2
BT052588_1(BT052588|pid:none) Medicago truncatula clone MTYFD_FE...    36   2.2
BC170881_1(BC170881|pid:none) Xenopus tropicalis voltage-depende...    36   2.2
BT044670_1(BT044670|pid:none) Salmo salar clone ssal-rgf-002-198...    36   2.8
CP000390_137(CP000390|pid:none) Mesorhizobium sp. BNC1, complete...    36   2.8
CP000852_411(CP000852|pid:none) Caldivirga maquilingensis IC-167...    36   2.8
AE015450_558(AE015450|pid:none) Mycoplasma gallisepticum strain ...    36   2.8
AE015450_249(AE015450|pid:none) Mycoplasma gallisepticum strain ...    36   2.8
AE017245_466(AE017245|pid:none) Mycoplasma synoviae 53, complete...    36   2.8
AL844509_103(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    35   3.7
AF368236_1(AF368236|pid:none) Leptospira interrogans serovar pom...    35   3.7
EU700271_1(EU700271|pid:none) Leptospira interrogans serovar Ken...    35   3.7
EU700267_1(EU700267|pid:none) Leptospira interrogans strain Kito...    35   3.7
EU700268_1(EU700268|pid:none) Leptospira interrogans strain Kito...    35   3.7
CP000542_1933(CP000542|pid:none) Verminephrobacter eiseniae EF01...    35   3.7
EU700270_1(EU700270|pid:none) Leptospira interrogans serovar Ken...    35   3.7
T17515(T17515) hypothetical protein A25L - Chlorella virus PBCV-...    35   4.8
(Q49ZT3) RecName: Full=Membrane-associated protein tcaA;  &AP008...    35   4.8
(Q60930) RecName: Full=Voltage-dependent anion-selective channel...    35   4.8
CP000102_568(CP000102|pid:none) Methanosphaera stadtmanae DSM 30...    35   4.8
BC003731_1(BC003731|pid:none) Mus musculus voltage-dependent ani...    35   4.8
S65537(S65537;S65506)porin - fruit fly (Drosophila melanogaster)       35   4.8
A38102(A38102)voltage-dependent anion channel-like protein - rat       35   4.8
AY398429_1(AY398429|pid:none) Danio rerio clone RK078A3F07 volta...    35   4.8
(P27059) RecName: Full=DNA-directed RNA polymerase subunit beta;...    35   6.3
CP000866_452(CP000866|pid:none) Nitrosopumilus maritimus SCM1, c...    35   6.3
CP000449_2767(CP000449|pid:none) Maricaulis maris MCS10, complet...    35   6.3
DQ222504_1(DQ222504|pid:none) Solanum tuberosum clone 108D01 unk...    35   6.3
CP000776_928(CP000776|pid:none) Campylobacter hominis ATCC BAA-3...    35   6.3
GN105678_1(GN105678|pid:none) Sequence 10459 from Patent WO20090...    35   6.3
BX897699_641(BX897699|pid:none) Bartonella henselae strain Houst...    35   6.3
(Q5R7V4) RecName: Full=Voltage-dependent anion-selective channel...    35   6.3
AP007281_34(AP007281|pid:none) Lactobacillus reuteri JCM 1112 DN...    34   8.2
CP001033_2144(CP001033|pid:none) Streptococcus pneumoniae CGSP14...    34   8.2
CR382121_365(CR382121|pid:none) Kluyveromyces lactis strain NRRL...    34   8.2

>(Q01501) RecName: Full=Mitochondrial outer membrane protein porin;
           AltName: Full=Voltage-dependent anion-selective channel
           protein;          Short=VDAC;
           &AC115682_6(AC115682|pid:none)
           &M96668_1(M96668|pid:none) &S27805(A45076;S27805)
          Length = 275

 Score =  545 bits (1403), Expect = e-153
 Identities = 275/275 (100%), Positives = 275/275 (100%)
 Frame = +2

Query: 53  MNPGLYADLTKPTADFIKKDFAETFKLDTTFKGKYGSIVAVTDIKDSGVVASIQPKADFT 232
           MNPGLYADLTKPTADFIKKDFAETFKLDTTFKGKYGSIVAVTDIKDSGVVASIQPKADFT
Sbjct: 1   MNPGLYADLTKPTADFIKKDFAETFKLDTTFKGKYGSIVAVTDIKDSGVVASIQPKADFT 60

Query: 233 KYLGKVSNGNFTVDTNGVKKGEFTIENIIPGLKAVANGDSKQNFSTEFQYKKDKIAFTLF 412
           KYLGKVSNGNFTVDTNGVKKGEFTIENIIPGLKAVANGDSKQNFSTEFQYKKDKIAFTLF
Sbjct: 61  KYLGKVSNGNFTVDTNGVKKGEFTIENIIPGLKAVANGDSKQNFSTEFQYKKDKIAFTLF 120

Query: 413 GHNNKSFNTSLAFLINPTFSVGVQAEGNAKNTLKNVNATITIRPRPDVFVSIVDRFMDKQ 592
           GHNNKSFNTSLAFLINPTFSVGVQAEGNAKNTLKNVNATITIRPRPDVFVSIVDRFMDKQ
Sbjct: 121 GHNNKSFNTSLAFLINPTFSVGVQAEGNAKNTLKNVNATITIRPRPDVFVSIVDRFMDKQ 180

Query: 593 ILLSTLYTATSKLSFAGDVTVDLKASEKAPSFNVGTQYKIDSASLLKAKVNNNRKVNISY 772
           ILLSTLYTATSKLSFAGDVTVDLKASEKAPSFNVGTQYKIDSASLLKAKVNNNRKVNISY
Sbjct: 181 ILLSTLYTATSKLSFAGDVTVDLKASEKAPSFNVGTQYKIDSASLLKAKVNNNRKVNISY 240

Query: 773 IYNTSNNTKFVLGWNVNTKNFKQGNTFGATVNLTL 877
           IYNTSNNTKFVLGWNVNTKNFKQGNTFGATVNLTL
Sbjct: 241 IYNTSNNTKFVLGWNVNTKNFKQGNTFGATVNLTL 275

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,400,980,377
Number of extensions: 24955113
Number of successful extensions: 80218
Number of sequences better than 10.0: 127
Number of HSP's gapped: 79430
Number of HSP's successfully gapped: 135
Length of query: 372
Length of database: 1,051,180,864
Length adjustment: 130
Effective length of query: 242
Effective length of database: 630,428,194
Effective search space: 152563622948
Effective search space used: 152563622948
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.80  gvh: 0.43  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.12  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 20.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: vesicles of secretory system
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U15215-1 is cyt
VS (DIR, S) 5
VH (FL, L) 2
VF (FL, S) 3
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 2
FC-IC (SUB) 1