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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15212-1
Contig ID Contig-U15212-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15212-1 (Contig-U15212-1Q) /CSM_Contig/Contig-U15212-1Q.Seq.d
ATTGAAAATTAAAAATGACAAGAACCAGTTTATTCAAAGGACCCCATCCA
ACCCAGTAAAAATCCTGCAAATCTCGTGGTTCTAACTTAAGAATTCACTT
CAAGAACACCAGAGAATCAGCTATGGCCATCAAAGGTATGCTCTTAACCA
GAAGCTAAAGCTTACTTAAACAACGTTTTAGCCCATAGAGAATGTATCCC
ATTCAGAAGATTCAAAGGTGGTGTAGGTCGTACTGGTCAAGCCAAAATTT
TCGGTACCAGTCAAGGTAGATGGCCAAAGAAATCTGTTGAACACATTTTA
TCACTCCTCCAAAATGCTGAAGCCAACGCTGAAGCTAAGGGTTTAAATGT
TGAAAAACTCAAGATCGCTCACGTTTCAAGTTCAACGTGCTCAACAACAA
CGTAGAAGAACCTACAGAGCACATGGGTCGTATCAATCCATACATGTGTT
CACCATCAACTGTTGAATTCATCCTCACTTGAAGTTGAAAAAGCTGTCCC
AAAACCAGCTGAAGAATCCGCCCAAAAGAAGAAATGCTGTCGCCACCCAA
GAAATCTCTGCTTAAATAAAAAAATATAATTATTAAAAAAAATAATAATC
TTTTAAAAAAAAAAAGCCGNACCCCTTTNGCNGCACCCCCCCTAAGCCGA
ANTNTGGGGATTTCCA
Gap no gap
Contig length 666
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 3056274
End point 3056888
Strand (PLUS/MINUS) PLUS
Number of clones 22
Number of EST 26
Link to clone list U15212
List of clone(s) 

est1=VSI230Z,0,552
est2=VSF481F,1,614
est3=VSG433E,1,596
est4=VSH670E,1,587
est5=VSI662E,1,592
est6=VSG531F,3,177
est7=VSJ734F,3,614
est8=VSJ734Z,3,577
est9=VSE411E,11,585
est10=FC-BN21E,12,599
est11=VSB717Z,12,606
est12=VSF310F,14,614
est13=VSH352Z,20,594
est14=VSH352F,21,614
est15=FC-BN14E,22,613
est16=VSJ325Z,22,591
est17=VSJ325F,23,522
est18=VSH245E,35,574
est19=VSB632Z,60,606
est20=VSF310Z,76,592
est21=VSB680Z,80,605
est22=VSB609Z,100,599
est23=VSF481Z,111,594
est24=VSC895Z,152,604
est25=FC-IC0586Z,268,658
est26=VSE787E,316,589
Translated Amino Acid sequence 
ien*k*qepvyskdpiqpsknpanlvvlt*eftsrtpenqlwpskvcs*PEAKAYLNNVL
AHRECIPFRRFKGGVGRTGQAKIFGTSQGRWPKKSVEHILSLLQNAEANAEAKGLNVEKL
KIAHVSSSTCSTTT*knlqstwvvsihtcvhhqllnssslevekavpkpaeesaqkkkcc
rhprnlclnkki*llkkiiif*kkkaxplxxhpp*aexwgfp
Translated Amino Acid sequence (All Frames) 
Frame A:
ien*k*qepvyskdpiqpsknpanlvvlt*eftsrtpenqlwpskvcs*PEAKAYLNNVL
AHRECIPFRRFKGGVGRTGQAKIFGTSQGRWPKKSVEHILSLLQNAEANAEAKGLNVEKL
KIAHVSSSTCSTTT*knlqstwvvsihtcvhhqllnssslevekavpkpaeesaqkkkcc
rhprnlclnkki*llkkiiif*kkkaxplxxhpp*aexwgfp


Frame B:
lkikndknqfiqrtpsnpvkilqiswf*lknslqehqrisyghqryalnqklklt*ttf*
pienvshsedskvv*vvlvkpkfsvpvkvdgqrnllntfyhsskmlkptlklrv*mlkns
rsltfqvqraqqqrrrtyrahgsyqsihvftinc*ihphlklkklsqnqlknppkrrnav
atqeisa*ikkyny*kk**sfkkkkpxpfxxtppkpxxgdf


Frame C:
*klkmtrtslfkgphptq*kscksrgsnlrihfkntresamaikgmlltrs*sllkqrfs
p*rmypiqkiqrwcrsywssqnfryqsr*makeic*thfitppkc*sqr*s*gfkc*ktq
drsrfkfnvlnnnveeptehmgrinpymcspstvefilt*s*kscpkts*rirpkeemls
ppkksllk*kniiikknnnllkkksrtpxaapplsrxxgis
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15212-1 (Contig-U15212-1Q)
/CSM_Contig/Contig-U15212-1Q.Seq.d
         (666 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15212-1 (Contig-U15212-1Q) /CSM_Contig/Conti...  1112  0.0
Contig-U11551-1 (Contig-U11551-1Q) /CSM_Contig/Conti...    36  0.067
Contig-U16571-1 (Contig-U16571-1Q) /CSM_Contig/Conti...    34  0.26
Contig-U16569-1 (Contig-U16569-1Q) /CSM_Contig/Conti...    34  0.26
Contig-U16411-1 (Contig-U16411-1Q) /CSM_Contig/Conti...    32  1.0
Contig-U15810-1 (Contig-U15810-1Q) /CSM_Contig/Conti...    32  1.0
Contig-U15598-1 (Contig-U15598-1Q) /CSM_Contig/Conti...    32  1.0
Contig-U15559-1 (Contig-U15559-1Q) /CSM_Contig/Conti...    32  1.0
Contig-U15352-1 (Contig-U15352-1Q) /CSM_Contig/Conti...    32  1.0
Contig-U15263-1 (Contig-U15263-1Q) /CSM_Contig/Conti...    32  1.0

>Contig-U15212-1 (Contig-U15212-1Q) /CSM_Contig/Contig-U15212-1Q.Seq.d
          Length = 666

 Score = 1112 bits (561), Expect = 0.0
 Identities = 561/561 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgaaaattaaaaatgacaagaaccagtttattcaaaggaccccatccaacccagtaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   attgaaaattaaaaatgacaagaaccagtttattcaaaggaccccatccaacccagtaaa 60

                                                                       
Query: 61  aatcctgcaaatctcgtggttctaacttaagaattcacttcaagaacaccagagaatcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aatcctgcaaatctcgtggttctaacttaagaattcacttcaagaacaccagagaatcag 120

                                                                       
Query: 121 ctatggccatcaaaggtatgctcttaaccagaagctaaagcttacttaaacaacgtttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctatggccatcaaaggtatgctcttaaccagaagctaaagcttacttaaacaacgtttta 180

                                                                       
Query: 181 gcccatagagaatgtatcccattcagaagattcaaaggtggtgtaggtcgtactggtcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gcccatagagaatgtatcccattcagaagattcaaaggtggtgtaggtcgtactggtcaa 240

                                                                       
Query: 241 gccaaaattttcggtaccagtcaaggtagatggccaaagaaatctgttgaacacatttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gccaaaattttcggtaccagtcaaggtagatggccaaagaaatctgttgaacacatttta 300

                                                                       
Query: 301 tcactcctccaaaatgctgaagccaacgctgaagctaagggtttaaatgttgaaaaactc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcactcctccaaaatgctgaagccaacgctgaagctaagggtttaaatgttgaaaaactc 360

                                                                       
Query: 361 aagatcgctcacgtttcaagttcaacgtgctcaacaacaacgtagaagaacctacagagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aagatcgctcacgtttcaagttcaacgtgctcaacaacaacgtagaagaacctacagagc 420

                                                                       
Query: 421 acatgggtcgtatcaatccatacatgtgttcaccatcaactgttgaattcatcctcactt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acatgggtcgtatcaatccatacatgtgttcaccatcaactgttgaattcatcctcactt 480

                                                                       
Query: 481 gaagttgaaaaagctgtcccaaaaccagctgaagaatccgcccaaaagaagaaatgctgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gaagttgaaaaagctgtcccaaaaccagctgaagaatccgcccaaaagaagaaatgctgt 540

                                
Query: 541 cgccacccaagaaatctctgc 561
           |||||||||||||||||||||
Sbjct: 541 cgccacccaagaaatctctgc 561


 Score = 36.2 bits (18), Expect = 0.067
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 643 taagccgaantntggggatttcca 666
           ||||||||||||||||||||||||
Sbjct: 643 taagccgaantntggggatttcca 666


>Contig-U11551-1 (Contig-U11551-1Q) /CSM_Contig/Contig-U11551-1Q.Seq.d
          Length = 2135

 Score = 36.2 bits (18), Expect = 0.067
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 317  ctgaagccaacgctgaag 334
            ||||||||||||||||||
Sbjct: 1706 ctgaagccaacgctgaag 1723


>Contig-U16571-1 (Contig-U16571-1Q) /CSM_Contig/Contig-U16571-1Q.Seq.d
          Length = 4599

 Score = 34.2 bits (17), Expect = 0.26
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 469  tcatcctcacttgaagt 485
            |||||||||||||||||
Sbjct: 4241 tcatcctcacttgaagt 4225


 Score = 34.2 bits (17), Expect = 0.26
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 469 tcatcctcacttgaagt 485
           |||||||||||||||||
Sbjct: 880 tcatcctcacttgaagt 864


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7797
Number of Sequences: 8402
Number of extensions: 7797
Number of successful extensions: 558
Number of sequences better than 10.0: 49
length of query: 666
length of database: 8,075,542
effective HSP length: 16
effective length of query: 650
effective length of database: 7,941,110
effective search space: 5161721500
effective search space used: 5161721500
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.16
Homology vs DNA 
Query= Contig-U15212-1 (Contig-U15212-1Q) /CSM_Contig/Contig-U15212-1Q.Seq.d
         (666 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU270386) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    8
(AU265300) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    9
(AU266474) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    9
(AU269049) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    9
(AU267801) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    8
(AU267312) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    7
(AU270387) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    9
(AU269048) Dictyostelium discoideum vegetative cDNA clone:VS...   722   0.0    5
(AU265029) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    8
(AU284868) Dictyostelium discoideum gamete cDNA clone:FC-BN2...   442   0.0    8
(AU262197) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    8
(AU263084) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    8
(AU267313) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    8
(AU284860) Dictyostelium discoideum gamete cDNA clone:FC-BN1...   434   0.0    8
(AU269755) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    8
(AU267135) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    7
(AU262149) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    6
(AU268359) Dictyostelium discoideum vegetative cDNA clone:VS...   436   0.0    5
(AU265030) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    6
(AU262177) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    6
(AU269754) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    6
(AU267800) Dictyostelium discoideum vegetative cDNA clone:VS...   430   0.0    7
(AU262131) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    6
(AU265301) Dictyostelium discoideum vegetative cDNA clone:VS...   525   0.0    5
(AU267134) Dictyostelium discoideum vegetative cDNA clone:VS...   442   0.0    4
(AU262869) Dictyostelium discoideum vegetative cDNA clone:VS...   432   0.0    5
(AU266473) Dictyostelium discoideum vegetative cDNA clone:VS...   428   0.0    5
(AU271719) Dictyostelium discoideum gamete cDNA clone:FC-IC0...   198   e-136  6
(AU263379) Dictyostelium discoideum vegetative cDNA clone:VS...   111   e-109  5
(AU266599) Dictyostelium discoideum vegetative cDNA clone:VS...   188   2e-73  4
(EC762281) PSE00006396 rw_mgpallid Polysphondylium pallidum ...    72   3e-30  4
(AU264816) Dictyostelium discoideum vegetative cDNA clone:VS...   111   1e-25  2
(EC761470) PSE00006606 rw_mgpallid Polysphondylium pallidum ...    72   1e-23  3
(EC761376) PSE00006746 rw_mgpallid Polysphondylium pallidum ...    72   1e-23  3
(EC760795) PSE00002600 rw_mgpallid Polysphondylium pallidum ...    64   3e-21  4
(EC745890) PSE00005793 rw_mgpallid Polysphondylium pallidum ...    72   2e-20  2
(EC745780) PSE00007910 rw_mgpallid Polysphondylium pallidum ...    60   6e-14  2
(EH431701) NPE00000421 Neocallimastix patriciarum ZAP II cDN...    42   5e-10  4
(DN135516) tam56d06.y2 Hydra_EST_HyEch_JUMY_T2 Hydractinia e...    44   2e-08  4
(FE527672) Chr.00034 cDNA library of Chrysoperla nipponensis...    50   2e-08  2
(EC853604) HDE00001752 Hyperamoeba dachnaya Non-normalized (...    52   7e-07  2
(CU615718) Theobroma cacao, mRNA sequence (KZ0AAN4YM16FM1).        40   2e-06  3
(DN201501) USDA-FP_136592 Asian citrus psyllid Diaphorina ci...    38   5e-06  4
(FK257926) USDA-FP_193889 Asian citrus psyllid midgut (Hemip...    38   6e-06  4
(EC129194) HVE00002459 Hartmannella vermiformis Regular Smal...    52   1e-05  2
(EC130885) HVE00005656 Hartmannella vermiformis Normalized s...    52   2e-05  2
(CA755192) BR030015000_PLATE_D01_4_012.ab1 OA Oryza sativa J...    46   3e-05  3
(DN468128) USDA-FP_142110 Diaphorina citri Kuwayama (Hemipte...    34   3e-05  4
(AY967565) Schmidtea mediterranea clone NBE.2.01H mRNA seque...    62   3e-05  1
(DV448590) CV01025A1H04.f1 CV01-normalized library Manihot e...    62   3e-05  1
(DV441711) CV01005A1C08.f1 CV01-normalized library Manihot e...    62   3e-05  1
(DN313033) PL06014B1C01 cDNA from juvenile hermaphodites Sch...    62   3e-05  1
(DN310920) PL06008B2A09 cDNA from juvenile hermaphodites Sch...    62   3e-05  1
(DN309139) PL06003X1G04 cDNA from juvenile hermaphodites Sch...    62   3e-05  1
(DN308964) PL06001X1H04 cDNA from juvenile hermaphodites Sch...    62   3e-05  1
(DN303330) PL05002B2C11 cDNA from sexually mature hermaphodi...    62   3e-05  1
(DN302575) PL020002001A12 cDNA from sexually mature hermapho...    62   3e-05  1
(DN301333) PL04022A2A10 cDNA from sexually mature hermaphodi...    62   3e-05  1
(DN300806) PL04020B1B04 cDNA from sexually mature hermaphodi...    62   3e-05  1
(DN300685) PL04020A1E05 cDNA from sexually mature hermaphodi...    62   3e-05  1
(DN300319) PL04018B2G05 cDNA from sexually mature hermaphodi...    62   3e-05  1
(DN300270) PL04018B2B12 cDNA from sexually mature hermaphodi...    62   3e-05  1
(DN300229) PL04018B1G01 cDNA from sexually mature hermaphodi...    62   3e-05  1
(DN299905) PL04017B1E07 cDNA from sexually mature hermaphodi...    62   3e-05  1
(DN298812) PL04014A1B07 cDNA from sexually mature hermaphodi...    62   3e-05  1
(DN296313) PL04005B1G07 cDNA from sexually mature hermaphodi...    62   3e-05  1
(DN293684) PL030014B20C08 cDNA from sexually mature hermapho...    62   3e-05  1
(DN293638) PL030014B10G09 cDNA from sexually mature hermapho...    62   3e-05  1
(DN293570) PL030014B10A06 cDNA from sexually mature hermapho...    62   3e-05  1
(DN293562) PL030014A20H09 cDNA from sexually mature hermapho...    62   3e-05  1
(DN292928) PL030012A20C08 cDNA from sexually mature hermapho...    62   3e-05  1
(DN292300) PL030010A20E11 cDNA from sexually mature hermapho...    62   3e-05  1
(DN291617) PL030007B20H04 cDNA from sexually mature hermapho...    62   3e-05  1
(DN291294) PL030006B20B05 cDNA from sexually mature hermapho...    62   3e-05  1
(DN290839) PL030005A20A07 cDNA from sexually mature hermapho...    62   3e-05  1
(DN290540) PL030004A20E01 cDNA from sexually mature hermapho...    62   3e-05  1
(DN289538) PL030001A20B10 cDNA from sexually mature hermapho...    62   3e-05  1
(DQ673427) Diaphorina citri putative ribosomal protein L17 m...    34   4e-05  4
(CO539435) tai17a06.y1 HyEch JUMY T1 Hydractinia echinata cD...    44   4e-05  3
(DN467008) USDA-FP_140988 Diaphorina citri Kuwayama (Hemipte...    34   5e-05  4
(DN201947) USDA-FP_137038 Asian citrus psyllid Diaphorina ci...    34   6e-05  4
(DN202313) USDA-FP_137404 Asian citrus psyllid Diaphorina ci...    34   6e-05  4
(BW521784) Ciona savignyi cDNA, clone:csga070i08, 5'end, sin...    38   6e-05  3
(BW533844) Ciona savignyi cDNA, clone:csma079k12, 5'end, sin...    38   7e-05  3
(BW534675) Ciona savignyi cDNA, clone:csma082l22, 5'end, sin...    38   7e-05  3
(BW558089) Ciona savignyi cDNA, clone:cslv004i09, 3'end, sin...    38   7e-05  3
(BW535797) Ciona savignyi cDNA, clone:csma086h01, 5'end, sin...    38   8e-05  3
(EH431598) NPE00000757 Neocallimastix patriciarum ZAP II cDN...    42   8e-05  3
(BW564161) Ciona savignyi cDNA, clone:csma082l22, 3'end, sin...    38   9e-05  3
(BW565233) Ciona savignyi cDNA, clone:csma086h01, 3'end, sin...    38   9e-05  3
(EC744926) PSE00005601 rw_mgpallid Polysphondylium pallidum ...    60   1e-04  1
(FE856682) CAFU761.rev CAFU Pichia stipitis oxygen limited d...    46   2e-04  2
(FE856683) CAFU761.fwd CAFU Pichia stipitis oxygen limited d...    46   3e-04  2
(FE859799) CAFY1066.rev CAFY Pichia stipitis oxygen limited ...    46   3e-04  2
(FE846177) CAFI593.fwd CAFI Pichia stipitis aerobic dextrose...    46   3e-04  2
(FE846176) CAFI593.rev CAFI Pichia stipitis aerobic dextrose...    46   3e-04  2
(FE856664) CAFU751.rev CAFU Pichia stipitis oxygen limited d...    46   3e-04  2
(FE856134) CAFU469.rev CAFU Pichia stipitis oxygen limited d...    46   3e-04  2
(FE846059) CAFI529.fwd CAFI Pichia stipitis aerobic dextrose...    46   3e-04  2
(FE851967) CAFP1996.rev CAFP Pichia stipitis aerobic xylose ...    46   3e-04  2

>(AU270386) Dictyostelium discoideum vegetative cDNA clone:VSJ734,
           5' end single read.
          Length = 605

 Score =  442 bits (223), Expect(8) = 0.0
 Identities = 223/223 (100%)
 Strand = Plus / Plus


Query: 153 agctaaagcttacttaaacaacgttttagcccatagagaatgtatcccattcagaagatt 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 agctaaagcttacttaaacaacgttttagcccatagagaatgtatcccattcagaagatt 206


Query: 213 caaaggtggtgtaggtcgtactggtcaagccaaaattttcggtaccagtcaaggtagatg 272
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 caaaggtggtgtaggtcgtactggtcaagccaaaattttcggtaccagtcaaggtagatg 266


Query: 273 gccaaagaaatctgttgaacacattttatcactcctccaaaatgctgaagccaacgctga 332
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gccaaagaaatctgttgaacacattttatcactcctccaaaatgctgaagccaacgctga 326


Query: 333 agctaagggtttaaatgttgaaaaactcaagatcgctcacgtt 375
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agctaagggtttaaatgttgaaaaactcaagatcgctcacgtt 369

 Score =  218 bits (110), Expect(8) = 0.0
 Identities = 110/110 (100%)
 Strand = Plus / Plus


Query: 426 ggtcgtatcaatccatacatgtgttcaccatcaactgttgaattcatcctcacttgaagt 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ggtcgtatcaatccatacatgtgttcaccatcaactgttgaattcatcctcacttgaagt 477


Query: 486 tgaaaaagctgtcccaaaaccagctgaagaatccgcccaaaagaagaaat 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tgaaaaagctgtcccaaaaccagctgaagaatccgcccaaaagaagaaat 527

 Score =  188 bits (95), Expect(8) = 0.0
 Identities = 95/95 (100%)
 Strand = Plus / Plus


Query: 58  aaaaatcctgcaaatctcgtggttctaacttaagaattcacttcaagaacaccagagaat 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53  aaaaatcctgcaaatctcgtggttctaacttaagaattcacttcaagaacaccagagaat 112


Query: 118 cagctatggccatcaaaggtatgctcttaaccaga 152
           |||||||||||||||||||||||||||||||||||
Sbjct: 113 cagctatggccatcaaaggtatgctcttaaccaga 147

 Score =  103 bits (52), Expect(8) = 0.0
 Identities = 52/52 (100%)
 Strand = Plus / Plus


Query: 375 ttcaagttcaacgtgctcaacaacaacgtagaagaacctacagagcacatgg 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttcaagttcaacgtgctcaacaacaacgtagaagaacctacagagcacatgg 419

 Score = 52.0 bits (26), Expect(8) = 0.0
 Identities = 26/26 (100%)
 Strand = Plus / Plus


Query: 537 ctgtcgccacccaagaaatctctgct 562
           ||||||||||||||||||||||||||
Sbjct: 528 ctgtcgccacccaagaaatctctgct 553

 Score = 38.2 bits (19), Expect(8) = 0.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus


Query: 3  tgaaaattaaaaatgacaa 21
          |||||||||||||||||||
Sbjct: 1  tgaaaattaaaaatgacaa 19

 Score = 36.2 bits (18), Expect(8) = 0.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus


Query: 40 gaccccatccaacccagtaaaa 61
          ||||||||||||||||| ||||
Sbjct: 36 gaccccatccaacccagaaaaa 57

 Score = 34.2 bits (17), Expect(8) = 0.0
 Identities = 17/17 (100%)
 Strand = Plus / Plus


Query: 23 aaccagtttattcaaag 39
          |||||||||||||||||
Sbjct: 20 aaccagtttattcaaag 36

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 643,581,724
Number of extensions: 37869314
Number of successful extensions: 2864742
Number of sequences better than 10.0: 1507
Length of query: 666
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 642
Effective length of database: 100,704,341,533
Effective search space: 64652187264186
Effective search space used: 64652187264186
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.15
Homology vs Protein 
Query= Contig-U15212-1 (Contig-U15212-1Q) /CSM_Contig/Contig-U15212-1Q.Seq.d
         (666 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q4GXH5) RecName: Full=60S ribosomal protein L17;  &AM049048_1(A...   102   1e-33
AB173559_1(AB173559|pid:none) Macaca fascicularis brain cDNA clo...   106   9e-33
AB374952_1(AB374952|pid:none) Solea senegalensis RPL17 mRNA for ...   108   2e-32
(P18621) RecName: Full=60S ribosomal protein L17; AltName: Full=...   106   2e-32
AY650298_1(AY650298|pid:none) Macaca fascicularis ribosomal prot...   106   2e-32
(Q4GXH7) RecName: Full=60S ribosomal protein L17;  &AM049046_1(A...   105   3e-32
(A0NGY0) RecName: Full=60S ribosomal protein L17;                     104   8e-32
BT043736_1(BT043736|pid:none) Salmo salar clone HM6_0489 ribosom...   102   2e-31
AY961494_1(AY961494|pid:none) Lysiphlebus testaceipes ribosomal ...   103   2e-30
AY961555_1(AY961555|pid:none) Lysiphlebus testaceipes ribosomal ...   102   2e-30
AB098888_1(AB098888|pid:none) Bos taurus mRNA for similar to rib...   100   2e-30
CP001323_860(CP001323|pid:none) Micromonas sp. RCC299 chromosome...    97   4e-30
(Q1HR65) RecName: Full=60S ribosomal protein L17;  &DQ440229_1(D...    99   7e-30
(Q5MIR6) RecName: Full=60S ribosomal protein L17;  &AY826144_1(A...    99   7e-30
(Q5UAS2) RecName: Full=60S ribosomal protein L17;  &AY769286_1(A...   101   1e-29
AY130353_1(AY130353|pid:none) Myxine glutinosa ribosomal protein...    98   6e-29
(A8CAG3) RecName: Full=60S ribosomal protein L17;  &EU045355_1(E...   100   7e-29
AK340048_1(AK340048|pid:none) Acyrthosiphon pisum ACYPI008181 mR...    98   9e-29
EU125016_1(EU125016|pid:none) Eurythoe complanata ribosomal prot...   101   2e-28
EF145106_1(EF145106|pid:none) Populus trichocarpa clone WS01120_...    94   7e-28
EU302541_1(EU302541|pid:none) Lineus viridis ribosomal protein r...    96   2e-27
EF145712_1(EF145712|pid:none) Populus trichocarpa clone WS0112_N...    92   3e-27
EU116899_1(EU116899|pid:none) Barentsia elongata putative riboso...    93   1e-25
BT064973_1(BT064973|pid:none) Zea mays full-length cDNA clone ZM...    89   4e-25
BT058981_1(BT058981|pid:none) Salmo salar clone ssal-rgf-517-298...    80   3e-24
(O14339) RecName: Full=60S ribosomal protein L17-A;  &CU329671_6...    97   5e-24
AM445900_2(AM445900|pid:none) Vitis vinifera contig VV78X238294....    87   6e-24
(Q6MY48) RecName: Full=60S ribosomal protein L17;  &BX649607_78(...    81   6e-24
(O59794) RecName: Full=60S ribosomal protein L17-B;  &AL022243_5...    97   8e-24
AM269984_5(AM269984|pid:none) Aspergillus niger contig An01c0370...    79   4e-23
AP007171_316(AP007171|pid:none) Aspergillus oryzae RIB40 genomic...    78   7e-23
AY849668_1(AY849668|pid:none) Magnaporthe grisea 60S ribosomal p...    80   1e-22
AB172151_1(AB172151|pid:none) Macaca fascicularis brain cDNA clo...   106   5e-22
(P24049) RecName: Full=60S ribosomal protein L17; AltName: Full=...   106   7e-22
BC094640_1(BC094640|pid:none) Mus musculus ribosomal protein L17...   106   7e-22
AB098987_1(AB098987|pid:none) Bos taurus mRNA for similar to rib...   106   7e-22
AE017356_170(AE017356|pid:none) Cryptococcus neoformans var. neo...    90   2e-21
(Q5MGD1) RecName: Full=60S ribosomal protein L17;  &AY829855_1(A...   104   3e-21
EU930242_1(EU930242|pid:none) Simulium vittatum clone SV-212 60S...   101   3e-21
BC077192_1(BC077192|pid:none) Xenopus laevis MGC78885 protein, m...   102   1e-20
EU247128_1(EU247128|pid:none) Lycosa singoriensis clone LSsin20 ...   102   1e-20
BC043971_1(BC043971|pid:none) Xenopus laevis similar to ribosoma...   102   1e-20
EF134357_1(EF134357|pid:none) Oxyrrhis marina isolate Om-5p-32 r...   101   2e-20
BT078715_1(BT078715|pid:none) Lepeophtheirus salmonis Pacific fo...   100   3e-20
BT077143_1(BT077143|pid:none) Caligus rogercresseyi clone crog-e...   100   4e-20
(Q09JW2) RecName: Full=60S ribosomal protein L17;  &DQ886734_1(D...   100   5e-20
(Q29IM3) RecName: Full=60S ribosomal protein L17;                      98   2e-19
EF086572_1(EF086572|pid:none) Picea sitchensis clone WS02732_E11...    98   3e-19
EF084457_1(EF084457|pid:none) Picea sitchensis clone WS0299_C16 ...    98   3e-19
FN392320_1218(FN392320|pid:none) Pichia pastoris GS115 chromosom...    98   3e-19
(Q6XJ13) RecName: Full=60S ribosomal protein L17;  &AY231666_1(A...    97   3e-19
AM910994_24(AM910994|pid:none) Plasmodium knowlesi strain H chro...    97   4e-19
AY130351_1(AY130351|pid:none) Scyliorhinus canicula ribosomal pr...    97   4e-19
(Q4KTG9) RecName: Full=60S ribosomal protein L17;  &AY857430_1(A...    97   6e-19
(Q4N4B9) RecName: Full=60S ribosomal protein L17;                      96   7e-19
EU952594_1(EU952594|pid:none) Zea mays clone 1283974 60S ribosom...    96   1e-18
EF103427_1(EF103427|pid:none) Haliotis discus discus ribosomal p...    95   2e-18
CU928170_179(CU928170|pid:none) Kluyveromyces thermotolerans str...    94   3e-18
AF076975_1(AF076975|pid:none) Populus alba unknown mRNA, partial...    94   4e-18
EU960160_1(EU960160|pid:none) Zea mays clone 222243 60S ribosoma...    93   6e-18
EU284969_1(EU284969|pid:none) TSA: Elaeis guineensis EgEfMPOB001...    93   6e-18
(P37380) RecName: Full=60S ribosomal protein L17;  &S34122(S3412...    93   6e-18
(Q6CBS7) RecName: Full=60S ribosomal protein L17;  &CR382129_596...    93   6e-18
AK072488_1(AK072488|pid:none) Oryza sativa Japonica Group cDNA c...    92   1e-17
EU284968_1(EU284968|pid:none) TSA: Elaeis guineensis EgEfMPOB001...    92   1e-17
EU953016_1(EU953016|pid:none) Zea mays clone 1375496 60S ribosom...    92   1e-17
EU952887_1(EU952887|pid:none) Zea mays clone 1292878 60S ribosom...    92   1e-17
EU958879_1(EU958879|pid:none) Zea mays clone 208156 60S ribosoma...    92   2e-17
CP000498_541(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...    91   2e-17
(O48557) RecName: Full=60S ribosomal protein L17;  &AF034948_1(A...    91   2e-17
CR382121_267(CR382121|pid:none) Kluyveromyces lactis strain NRRL...    91   3e-17
EU975447_1(EU975447|pid:none) Zea mays clone 490587 60S ribosoma...    91   3e-17
(P46990) RecName: Full=60S ribosomal protein L17-B; AltName: Ful...    91   4e-17
AF264022_1(AF264022|pid:none) Poa secunda ribosomal protein L17-...    90   5e-17
EU139214_1(EU139214|pid:none) Flustra foliacea putative 60S ribo...    90   5e-17
FM992689_421(FM992689|pid:none) Candida dubliniensis CD36 chromo...    90   5e-17
CR380959_353(CR380959|pid:none) Candida glabrata strain CBS138 c...    90   5e-17
(P05740) RecName: Full=60S ribosomal protein L17-A; AltName: Ful...    90   5e-17
EU116856_1(EU116856|pid:none) Sipunculus nudus putative ribosoma...    82   8e-17
AF443188_3(AF443188|pid:none) Paracoccidioides brasiliensis sorb...    84   8e-17
EU964217_1(EU964217|pid:none) Zea mays clone 277006 unknown mRNA.      89   9e-17
DQ235197_1(DQ235197|pid:none) Solanum tuberosum clone 168G07 rib...    89   1e-16
DQ207869_1(DQ207869|pid:none) Solanum tuberosum clone 086A10 rib...    89   1e-16
AK062052_1(AK062052|pid:none) Oryza sativa Japonica Group cDNA c...    89   1e-16
AF307336_1(AF307336|pid:none) Petunia x hybrida ribosomal protei...    89   1e-16
AY130354_1(AY130354|pid:none) Branchiostoma lanceolatum ribosoma...    89   1e-16
S32578(S32578;S35101)ribosomal protein L17.1, cytosolic - barley       89   2e-16
S32579(S32579;S35102)ribosomal protein L17.2, cytosolic - barley       88   2e-16
CU928175_328(CU928175|pid:none) Zygosaccharomyces rouxii strain ...    88   2e-16
(P35266) RecName: Full=60S ribosomal protein L17-1;  &X62724_1(X...    88   2e-16
(P51413) RecName: Full=60S ribosomal protein L17-2;  &AC004393_1...    88   2e-16
FN357340_41(FN357340|pid:none) Schistosoma mansoni genome sequen...    87   6e-16
CT005269_44(CT005269|pid:none) Leishmania major strain Friedlin,...    86   8e-16
AY813028_1(AY813028|pid:none) Schistosoma japonicum SJCHGC09296 ...    83   6e-15
FN321734_1(FN321734|pid:none) Schistosoma japonicum isolate Anhu...    83   8e-15
AC025721_5(AC025721|pid:none) Caenorhabditis elegans cosmid Y48G...    53   8e-15
CU640366_1288(CU640366|pid:none) Podospora anserina genomic DNA ...    82   1e-14
AY321338_1(AY321338|pid:none) Rattus norvegicus Ac2-210 mRNA, co...    56   1e-13
AM920431_1299(AM920431|pid:none) Penicillium chrysogenum Wiscons...    79   2e-13
AB098996_1(AB098996|pid:none) Bos taurus mRNA for similar to rib...    66   8e-13
AF517861_1(AF517861|pid:none) Griffithsia japonica isolate Gj560...    74   3e-12
AL590447_141(AL590447|pid:none) chromosome VII of strain GB-M1 o...    74   3e-12
(Q4JB45) RecName: Full=50S ribosomal protein L22P;  &CP000077_55...    73   7e-12
(Q975I6) RecName: Full=50S ribosomal protein L22P;  &BA000023_47...    68   2e-10
CP001399_1373(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,...    67   5e-10
(Q9UXA2) RecName: Full=50S ribosomal protein L22P;  &AE006641_64...    67   6e-10
(Q2NFW1) RecName: Full=50S ribosomal protein L22P;  &CP000102_87...    65   2e-09
(A3DNB2) RecName: Full=50S ribosomal protein L22P;  &CP000575_10...    64   4e-09
AF083031_140(AF083031|pid:none) Guillardia theta nucleomorph chr...    52   2e-08
(A4YCX1) RecName: Full=50S ribosomal protein L22P;  &CP000682_96...    62   2e-08
AB099047_1(AB099047|pid:none) Bos taurus mRNA for similar to rib...    62   2e-08
(O26115) RecName: Full=50S ribosomal protein L22P;  &AE000666_7(...    62   2e-08
(P54033) RecName: Full=50S ribosomal protein L22P;  &D64357(D643...    60   6e-08
(Q8TX36) RecName: Full=50S ribosomal protein L22P;  &AE009439_84...    60   8e-08
CP001140_1167(CP001140|pid:none) Desulfurococcus kamchatkensis 1...    59   1e-07
(P62649) RecName: Full=50S ribosomal protein L22P;  &BX950229_14...    59   1e-07
(O28359) RecName: Full=50S ribosomal protein L22P;  &AE000782_18...    59   1e-07
(A3CT02) RecName: Full=50S ribosomal protein L22P;  &CP000562_56...    59   2e-07
EU016608_42(EU016608|pid:none) Uncultured marine microorganism H...    57   4e-07
AY714865_3(AY714865|pid:none) Uncultured archaeon GZfos35D7 clon...    57   4e-07
(A0RVX8) RecName: Full=50S ribosomal protein L22P;                     57   5e-07
(Q46GA0) RecName: Full=50S ribosomal protein L22P;  &CP000099_98...    55   1e-06
(A2SPK8) RecName: Full=50S ribosomal protein L22P;  &CP000559_86...    55   1e-06
FJ362590_1(FJ362590|pid:none) Vernicia fordii 60S ribosomal prot...    55   2e-06
CP001398_1999(CP001398|pid:none) Thermococcus gammatolerans EJ3,...    54   3e-06
(Q5JDH4) RecName: Full=50S ribosomal protein L22P;  &AP006878_15...    54   5e-06
(A1RXG7) RecName: Full=50S ribosomal protein L22P;                     54   5e-06
CP000505_487(CP000505|pid:none) Thermofilum pendens Hrk 5, compl...    54   5e-06
(A9A5J0) RecName: Full=50S ribosomal protein L22P;  &CP000866_80...    54   5e-06
(P10970) RecName: Full=50S ribosomal protein L22P; AltName: Full...    53   7e-06
(Q2FT36) RecName: Full=50S ribosomal protein L22P;  &CP000254_21...    53   7e-06
(P15008) RecName: Full=50S ribosomal protein L22P; AltName: Full...    52   1e-05
(A0B9W5) RecName: Full=50S ribosomal protein L22P;  &CP000477_16...    52   2e-05
CP000855_72(CP000855|pid:none) Thermococcus onnurineus NA1, comp...    51   3e-05
(Q9V1U0) RecName: Full=50S ribosomal protein L22P;  &AJ248284_39...    50   5e-05
(Q8TRU2) RecName: Full=50S ribosomal protein L22P;  &AE010299_10...    50   8e-05
CP001365_2413(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4...    49   2e-04
(Q97BX2) RecName: Full=50S ribosomal protein L22P;  &BA000011_33...    48   2e-04
(Q3IMY3) RecName: Full=50S ribosomal protein L22P;  &CR936257_24...    47   4e-04
CP000561_543(CP000561|pid:none) Pyrobaculum calidifontis JCM 115...    47   4e-04
DQ512326_1(DQ512326|pid:none) Leptinotarsa decemlineata ribosoma...    39   5e-04
(B1YD24) RecName: Full=50S ribosomal protein L22P;  &CP001014_72...    46   0.001
(A7I5P4) RecName: Full=50S ribosomal protein L22P;  &CP000780_53...    46   0.001
CP000968_1168(CP000968|pid:none) Candidatus Korarchaeum cryptofi...    45   0.001
(A1RVA1) RecName: Full=50S ribosomal protein L22P;                     45   0.001
(Q9HIR4) RecName: Full=50S ribosomal protein L22P;  &AL445067_37...    45   0.001
AM049049_1(AM049049|pid:none) Hister sp. APV-2005 partial mRNA f...    35   0.003
(A4WIY9) RecName: Full=50S ribosomal protein L22P;  &CP000660_73...    42   0.021
(Q8ZWH7) RecName: Full=50S ribosomal protein L22P;                     41   0.037
AE009441_1233(AE009441|pid:none) Pyrobaculum aerophilum str. IM2...    41   0.037
Y18930_133(Y18930|pid:none) Sulfolobus solfataricus 281 kb genom...    39   0.14
(P62650) RecName: Full=50S ribosomal protein L22P;  &AE017199_20...    39   0.14
EU686616_19(EU686616|pid:none) Uncultured marine group II euryar...    35   2.6
DQ347608_1(DQ347608|pid:none) Bos taurus clone H86 RPL17 mRNA, p...    34   3.4
A57416(A57416)ribosomal protein L7a, cytosolic - fruit fly (Dros...    34   4.5
AY246726_1(AY246726|pid:none) Equus caballus ribosomal protein L...    33   7.5

>(Q4GXH5) RecName: Full=60S ribosomal protein L17;
           &AM049048_1(AM049048|pid:none)
          Length = 182

 Score =  102 bits (255), Expect(3) = 1e-33
 Identities = 45/74 (60%), Positives = 60/74 (81%)
 Frame = +1

Query: 154 AKAYLNNVLAHRECIPFRRFKGGVGRTGQAKIFGTSQGRWPKKSVEHILSLLQNAEANAE 333
           A+A+L NV  H+EC+PFRRF GGVGR  QAK +GT+QGRWPKKS E +L +L+NAE+NA+
Sbjct: 44  AQAFLKNVTDHKECVPFRRFNGGVGRCSQAKQWGTTQGRWPKKSAEFLLQMLRNAESNAD 103

Query: 334 AKGLNVEKLKIAHV 375
             GL+V++L I H+
Sbjct: 104 YSGLDVDRLVIEHI 117

 Score = 55.8 bits (133), Expect(3) = 1e-33
 Identities = 26/37 (70%), Positives = 32/37 (86%)
 Frame = +3

Query: 60  KSCKSRGSNLRIHFKNTRESAMAIKGMLLTRS*SLLK 170
           K+CK+RGSNLR+HFKNTRE+AMAIK M L R+ + LK
Sbjct: 13  KTCKARGSNLRVHFKNTRETAMAIKKMSLRRAQAFLK 49

 Score = 28.1 bits (61), Expect(3) = 1e-33
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +3

Query: 426 GRINPYMCSPSTVEFILT 479
           GRINPYM SP  +E  LT
Sbjct: 134 GRINPYMSSPCHIEMWLT 151

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,059,654,717
Number of extensions: 19745762
Number of successful extensions: 45677
Number of sequences better than 10.0: 156
Number of HSP's gapped: 45545
Number of HSP's successfully gapped: 297
Length of query: 222
Length of database: 1,051,180,864
Length adjustment: 124
Effective length of query: 98
Effective length of database: 649,847,548
Effective search space: 63685059704
Effective search space used: 63685059704
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.77  gvh: 0.55  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.08
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	 16.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U15212-1 is cyt
VS (DIR, S) 18
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 3
FC-IC (SUB) 1