NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15206-1
Contig ID Contig-U15206-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15206-1 (Contig-U15206-1Q) /CSM_Contig/Contig-U15206-1Q.Seq.d
TTTTAAAATTAACAAATAAATATTGTCTTGTTGGACAATGTGGAAGTAAA
CAATTTTTACATACAGTAGAGAATAGATTAGCAGATCATATTCCAGTTGT
AGAGACAAGTATTGCAGGTACACGTATTGTTGGTCGTTTATCAGCAGGAA
ATAAGAATGGTTTATTATTACCAAATACATGTACCGATCAAGAATTACAA
CAAATTAGAAACTCATTACCAGATGATGTCGTAGTACAAAGAATTGAAGA
GAAATTCTCAGCATTGGGTAACTGTATCGCCACAAATGATTATGTTGCAT
TGGTACACCCAGATATCGATAGAGAGACCGAAGAGATCATTGCAGATGTT
TTAGGTGTTGAAGTTTTCAGACAAACCGTCTCTGGTAATGTTTTAGTTGG
TACCTATTGTGCTCTCACAAATCAAGGTGCTCTCGTTCATCCAATGACCT
CAATCGCCGATCAAGATGAGTTATCATCACTCCTTCAAGTTCCTTTAGTC
GCTGGTACCGTCAATCGTGGTAATGAATGTGTTGCCGCTGGTTGTGTAGT
TAATGATTGGACTGCCATCGTTGGTGCTGATACCACTGCCACTGAAATCT
CTGTCATTGAATCTATCTTTGCTCTTCAAGGCTCTAAACCATCAAACATT
ATTAATAATATTAGAAATTCAATTGTTGATAATGTATAAATAAAAAAAAA
AATAATAAAAAAAAAA
Gap no gap
Contig length 716
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 6835838
End point 6835123
Strand (PLUS/MINUS) MINUS
Number of clones 3
Number of EST 4
Link to clone list U15206
List of clone(s) 

est1=FC-BL20Z,1,706
est2=SSE565Z,136,716
est3=VSF496F,370,716
est4=VSF496Z,370,677
Translated Amino Acid sequence 
LKLTNKYCLVGQCGSKQFLHTVENRLADHIPVVETSIAGTRIVGRLSAGNKNGLLLPNTC
TDQELQQIRNSLPDDVVVQRIEEKFSALGNCIATNDYVALVHPDIDRETEEIIADVLGVE
VFRQTVSGNVLVGTYCALTNQGALVHPMTSIADQDELSSLLQVPLVAGTVNRGNECVAAG
CVVNDWTAIVGADTTATEISVIESIFALQGSKPSNIINNIRNSIVDNV*ikkkiikkk
Translated Amino Acid sequence (All Frames) 
Frame A:
f*n*qinivlldnvevnnfyiq*rid*qiifql*rqvlqvhvllvvyqqeirmvyyyqih
vpiknynklethyqmms*ykelkrnsqhwvtvspqmimlhwytqisierpkrslqmf*vl
kfsdkpslvmf*lvpivlsqikvlsfiq*pqspikmsyhhsfkfl*slvpsivvmnvlpl
vv*lmiglpslvliplplkslslnlsllfkalnhqtlliileiqllimyk*kkk**kk


Frame B:
fkink*ilscwtmwk*tiftysre*isrsysscrdkycrytycwsfisrk*ewfiitkym
yrsrittn*klitr*crstkn*reilsig*lyrhk*lccigtpryr*rdrrdhcrcfrc*
sfqtnrlw*cfswyllcshksrcsrssndlnrrsr*viitpsssfsrwyrqsw**mccrw
lcs**ldchrwc*yhch*nlch*iylcssrl*tikhy**y*kfnc**cinkkknnkkk


Frame C:
LKLTNKYCLVGQCGSKQFLHTVENRLADHIPVVETSIAGTRIVGRLSAGNKNGLLLPNTC
TDQELQQIRNSLPDDVVVQRIEEKFSALGNCIATNDYVALVHPDIDRETEEIIADVLGVE
VFRQTVSGNVLVGTYCALTNQGALVHPMTSIADQDELSSLLQVPLVAGTVNRGNECVAAG
CVVNDWTAIVGADTTATEISVIESIFALQGSKPSNIINNIRNSIVDNV*ikkkiikkk
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15206-1 (Contig-U15206-1Q)
/CSM_Contig/Contig-U15206-1Q.Seq.d
         (716 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15206-1 (Contig-U15206-1Q) /CSM_Contig/Conti...  1370  0.0
Contig-U15132-1 (Contig-U15132-1Q) /CSM_Contig/Conti...    36  0.072
Contig-U12445-1 (Contig-U12445-1Q) /CSM_Contig/Conti...    36  0.072
Contig-U10941-1 (Contig-U10941-1Q) /CSM_Contig/Conti...    36  0.072
Contig-U05061-1 (Contig-U05061-1Q) /CSM_Contig/Conti...    36  0.072
Contig-U16214-1 (Contig-U16214-1Q) /CSM_Contig/Conti...    34  0.28
Contig-U16020-1 (Contig-U16020-1Q) /CSM_Contig/Conti...    34  0.28
Contig-U15868-1 (Contig-U15868-1Q) /CSM_Contig/Conti...    34  0.28
Contig-U15752-1 (Contig-U15752-1Q) /CSM_Contig/Conti...    34  0.28
Contig-U14665-1 (Contig-U14665-1Q) /CSM_Contig/Conti...    34  0.28

>Contig-U15206-1 (Contig-U15206-1Q) /CSM_Contig/Contig-U15206-1Q.Seq.d
          Length = 716

 Score = 1370 bits (691), Expect = 0.0
 Identities = 691/691 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttaaaattaacaaataaatattgtcttgttggacaatgtggaagtaaacaatttttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ttttaaaattaacaaataaatattgtcttgttggacaatgtggaagtaaacaatttttac 60

                                                                       
Query: 61  atacagtagagaatagattagcagatcatattccagttgtagagacaagtattgcaggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atacagtagagaatagattagcagatcatattccagttgtagagacaagtattgcaggta 120

                                                                       
Query: 121 cacgtattgttggtcgtttatcagcaggaaataagaatggtttattattaccaaatacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cacgtattgttggtcgtttatcagcaggaaataagaatggtttattattaccaaatacat 180

                                                                       
Query: 181 gtaccgatcaagaattacaacaaattagaaactcattaccagatgatgtcgtagtacaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtaccgatcaagaattacaacaaattagaaactcattaccagatgatgtcgtagtacaaa 240

                                                                       
Query: 241 gaattgaagagaaattctcagcattgggtaactgtatcgccacaaatgattatgttgcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaattgaagagaaattctcagcattgggtaactgtatcgccacaaatgattatgttgcat 300

                                                                       
Query: 301 tggtacacccagatatcgatagagagaccgaagagatcattgcagatgttttaggtgttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tggtacacccagatatcgatagagagaccgaagagatcattgcagatgttttaggtgttg 360

                                                                       
Query: 361 aagttttcagacaaaccgtctctggtaatgttttagttggtacctattgtgctctcacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aagttttcagacaaaccgtctctggtaatgttttagttggtacctattgtgctctcacaa 420

                                                                       
Query: 421 atcaaggtgctctcgttcatccaatgacctcaatcgccgatcaagatgagttatcatcac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atcaaggtgctctcgttcatccaatgacctcaatcgccgatcaagatgagttatcatcac 480

                                                                       
Query: 481 tccttcaagttcctttagtcgctggtaccgtcaatcgtggtaatgaatgtgttgccgctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tccttcaagttcctttagtcgctggtaccgtcaatcgtggtaatgaatgtgttgccgctg 540

                                                                       
Query: 541 gttgtgtagttaatgattggactgccatcgttggtgctgataccactgccactgaaatct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gttgtgtagttaatgattggactgccatcgttggtgctgataccactgccactgaaatct 600

                                                                       
Query: 601 ctgtcattgaatctatctttgctcttcaaggctctaaaccatcaaacattattaataata 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ctgtcattgaatctatctttgctcttcaaggctctaaaccatcaaacattattaataata 660

                                          
Query: 661 ttagaaattcaattgttgataatgtataaat 691
           |||||||||||||||||||||||||||||||
Sbjct: 661 ttagaaattcaattgttgataatgtataaat 691


>Contig-U15132-1 (Contig-U15132-1Q) /CSM_Contig/Contig-U15132-1Q.Seq.d
          Length = 1107

 Score = 36.2 bits (18), Expect = 0.072
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 644 aaacattattaataatat 661
           ||||||||||||||||||
Sbjct: 639 aaacattattaataatat 622


>Contig-U12445-1 (Contig-U12445-1Q) /CSM_Contig/Contig-U12445-1Q.Seq.d
          Length = 2269

 Score = 36.2 bits (18), Expect = 0.072
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 186  gatcaagaattacaacaaatta 207
            |||||||| |||||||||||||
Sbjct: 1808 gatcaagagttacaacaaatta 1829


 Score = 32.2 bits (16), Expect = 1.1
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                            
Query: 648  attattaataatatta 663
            ||||||||||||||||
Sbjct: 1984 attattaataatatta 1969


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,799
Number of Sequences: 8402
Number of extensions: 11799
Number of successful extensions: 1357
Number of sequences better than 10.0: 160
length of query: 716
length of database: 8,075,542
effective HSP length: 16
effective length of query: 700
effective length of database: 7,941,110
effective search space: 5558777000
effective search space used: 5558777000
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.15
Homology vs DNA 
Query= Contig-U15206-1 (Contig-U15206-1Q) /CSM_Contig/Contig-U15206-1Q.Seq.d
         (716 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC115613) Dictyostelium discoideum chromosome 2 map 209116-...  1362   0.0    1
(AU284812) Dictyostelium discoideum gamete cDNA clone:FC-BL2...  1354   0.0    1
(C92453) Dictyostelium discoideum slug cDNA, clone SSE565.       1088   0.0    1
(AU265327) Dictyostelium discoideum vegetative cDNA clone:VS...   630   e-176  1
(AU265328) Dictyostelium discoideum vegetative cDNA clone:VS...   599   e-167  1
(FE845977) CAFI486.fwd CAFI Pichia stipitis aerobic dextrose...    80   8e-19  3
(FE845976) CAFI486.rev CAFI Pichia stipitis aerobic dextrose...    80   9e-19  3
(CX096670) EHAGV80TR E. histolytica Normalized cDNA library ...    74   3e-16  3
(CX095471) EHAGE20TR E. histolytica Normalized cDNA library ...    74   5e-16  3
(CX080250) EHAA560TR E. histolytica Normalized cDNA library ...    74   6e-16  3
(CX087623) EHAD283TR E. histolytica Normalized cDNA library ...    74   6e-16  3
(CX080249) EHAA560TF E. histolytica Normalized cDNA library ...    74   4e-15  2
(CX082272) EHAAU14TR E. histolytica Normalized cDNA library ...    74   4e-15  2
(CR382137) Debaryomyces hansenii strain CBS767 chromosome E ...    72   2e-13  2
(AL438390) T7 end of clone BC0AA015B09 of library BC0AA from...    72   2e-13  2
(DL173391) Methods for Identifying the Target of a Compound ...    52   2e-12  4
(AX488951) Sequence 6251 from Patent WO02053728.                   52   2e-12  4
(AR546694) Sequence 1825 from patent US 6747137.                   52   2e-12  4
(DY889974) CeleSEQ6977 Cunninghamella elegans pBluescript (E...    54   6e-12  3
(DY894410) CeleSEQ13973 Cunninghamella elegans pBluescript (...    54   8e-12  3
(DY892519) CeleSEQ11073 Cunninghamella elegans pBluescript (...    54   8e-12  3
(DY892813) CeleSEQ11827 Cunninghamella elegans pBluescript (...    54   9e-12  3
(DY892363) CeleSEQ10567 Cunninghamella elegans pBluescript (...    54   9e-12  3
(DY888200) CeleSEQ3705 Cunninghamella elegans pBluescript (E...    54   9e-12  3
(AM664516) Entamoeba moshkovskii FIC GSS, clone mosh069f07.q1k.    46   1e-11  4
(AL406829) T3 end of clone AU0AA012E07 of library AU0AA from...    68   1e-11  3
(CT810282) Paramecium tetraurelia 5-PRIME EST from clone LK0...    54   3e-11  3
(CT756001) Paramecium tetraurelia 5-PRIME EST from clone LK0...    54   3e-11  3
(CT855137) Oryza sativa Indica Group EST sequence:OSIGCRN120...    82   3e-11  1
(CP000501) Pichia stipitis CBS 6054 chromosome 7, complete s...    80   1e-10  1
(EH011601) USDA-FP_184584 Lysiphlebus testaceipes adult whol...    42   4e-10  5
(EH009921) USDA-FP_183071 Lysiphlebus testaceipes adult whol...    48   3e-09  4
(AM838518) Nicotiana tabacum EST, clone nt005005054.               56   3e-08  3
(CR382124) Kluyveromyces lactis strain NRRL Y-1140 chromosom...    72   3e-08  1
(CA755969) BR030032000_PLATE_C06_43_040.ab1 OA Oryza sativa ...    48   5e-08  3
(DC441419) Gryllus bimaculatus mRNA, clone:GB00364-32_F04, 5...    52   2e-07  2
(DC441305) Gryllus bimaculatus mRNA, clone:GB00364-31_D10, 5...    52   2e-07  2
(DB657319) Saccharomyces cerevisiae mRNA, clone: Y040_H17_F....    42   7e-07  3
(DB656503) Saccharomyces cerevisiae mRNA, clone: Y035_H20_F....    42   7e-07  3
(AY692916) Saccharomyces cerevisiae clone FLH158334.01X YPR0...    42   8e-07  3
(DJ208343) Method for identification of useful proteins deri...    42   8e-07  3
(AX830762) Sequence 1482 from Patent WO03072602.                   42   8e-07  3
(AX819732) Sequence 1482 from Patent EP1338608.                    42   8e-07  3
(AX596144) Sequence 1798 from Patent EP1258494.                    42   8e-07  3
(FE394243) CBTP1715.fwd CBTP_Daphnia_pulex_Chosen_One_Librar...    52   1e-06  2
(FE394242) CBTP1715.rev CBTP_Daphnia_pulex_Chosen_One_Librar...    52   2e-06  2
(EE594153) RM_G_00816 rare minnow gill cDNA Library Gobiocyp...    64   8e-06  1
(CR380957) Candida glabrata strain CBS138 chromosome K compl...    52   1e-05  2
(GE633432) LINN_XX_013_P11_LINN13.CR_P11 R. communis develop...    42   1e-05  3
(GE635334) LINN_XX_014_I11_LINN14.CR_I11 R. communis develop...    42   1e-05  3
(GE634634) LINN_XX_012_B06_LINN12.CR_B06 R. communis develop...    42   1e-05  3
(EH718595) CNML5143.b1_N13.ab1 CNM(LMS) spotted knapweed Cen...    40   5e-05  3
(CA905602) PCS02529 Scarlet Runner Bean Suspensor Region Tri...    50   8e-05  3
(BB917629) Trifolium pratense cDNA clone:RCE23246.                 40   1e-04  3
(AM721584) Cucumis melo subsp. melo EST, clone PSI_26-A07-M13R.    50   1e-04  2
(FD240614) CBZF28376.g1 CBZF: Normalized blue catfish cDNA l...    60   1e-04  1
(FD240613) CBZF28376.b1 CBZF: Normalized blue catfish cDNA l...    60   1e-04  1
(FD107284) CBZB12061.g1 CBZB: Normalized channel catfish cDN...    60   1e-04  1
(FD107283) CBZB12061.b1 CBZB: Normalized channel catfish cDN...    60   1e-04  1
(DB647660) Saccharomyces cerevisiae mRNA, clone: S03052-50_F...    36   1e-04  3
(CF771532) DSBF1_20_F10.g1_A010 Drought-stressed before flow...    48   2e-04  2
(FE683476) Pv006D_M13F_A05.ab1 Phaseolus vulgaris cv Early g...    42   2e-04  3
(FE683475) Pv006D_M13R_A05.ab1 Phaseolus vulgaris cv Early g...    42   2e-04  3
(FE683474) Pv049D_M13R_H01.ab1 Phaseolus vulgaris cv Early g...    42   2e-04  3
(BE023098) sm90g01.y1 Gm-c1015 Glycine max cDNA clone GENOME...    46   2e-04  2
(BI699886) sag49c07.y1 Gm-c1081 Glycine max cDNA clone GENOM...    46   2e-04  2
(AW318336) sg63h06.y1 Gm-c1007 Glycine max cDNA clone GENOME...    46   2e-04  2
(BE657388) GM700001B10A6 Gm-r1070 Glycine max cDNA clone Gm-...    46   3e-04  2
(BM178324) saj71f05.y1 Gm-c1072 Glycine max cDNA clone SOYBE...    46   3e-04  2
(BE348024) sp10d03.y1 Gm-c1042 Glycine max cDNA clone GENOME...    46   3e-04  2
(CX705286) gmrtDrNS01_40-B_M13R_G10_068.s1 Water stressed 5h...    46   4e-04  2
(BW659872) Glycine max cDNA clone: GMFL01-16-F16, 5'end, sim...    46   4e-04  2
(CX705917) gmrtDrNS01_06-C_M13R_B09_077.s1 Water stressed 5h...    46   5e-04  2
(FK881754) EST_crog_evp_897954 crog_evp Caligus rogercressey...    40   5e-04  2
(FK887224) EST_crog_evm_874143 crog_evm Caligus rogercressey...    40   5e-04  2
(FK891460) EST_crog_evm_829773 crog_evm Caligus rogercressey...    40   5e-04  2
(FK891459) EST_crog_evm_813069 crog_evm Caligus rogercressey...    40   5e-04  2
(FK881755) EST_crog_evp_904098 crog_evp Caligus rogercressey...    40   5e-04  2
(AM675465) Entamoeba terrapinae GSS, clone terra112d11.p1k.        58   5e-04  1
(Z49919) S.cerevisiae chromosome XVI cosmid 9531.                  42   7e-04  3
(AM809288) Nicotiana tabacum EST, clone nt002243086.               40   0.001  3
(U31900) Saccharomyces cerevisiae chromosome XVI cosmid 9723...    42   0.001  3
(AM055157) Polyplastron multivesiculatum EST, clone Pm02_F02.      38   0.001  3
(EW749405) sb_006_06D06_m13reverselong Onychiurus arcticus d...    46   0.001  3
(FC808800) CBGC9903.fwd CBGC Lottia gigantea 15h 18h embryos...    50   0.001  2
(FC753484) CBBI7387.fwd CBBI Lottia gigantea 26h,37h,61h Lar...    50   0.001  2
(FC730653) CBBG6127.fwd CBBG Lottia gigantea 12,15,18h embry...    50   0.001  2
(FD649985) MF1_78_D06.b1_F001 Limnanthes alba EST Library MF...    52   0.001  2
(FC803084) CBGC5539.fwd CBGC Lottia gigantea 15h 18h embryos...    50   0.001  2
(DY857083) ApulSEQ8191 Aureobasidium pullulans pBluescript (...    44   0.001  2
(FC721379) CBBG14004.fwd CBBG Lottia gigantea 12,15,18h embr...    50   0.001  2
(EW747849) sb_006_01K20_m13reverselong Onychiurus arcticus d...    46   0.002  3
(EW758171) sb_009_02G22_m13reverselong Onychiurus arcticus d...    46   0.002  3
(FD791433) 07VANA7_T7_041_C06_01MAR2006_044 07VANA7 Phaseolu...    42   0.002  3
(EG537900) RrLXFa56l11f1 CSF Rutilus rutilus cDNA clone 56l1...    56   0.002  1
(EG536027) RrLXMa51h19f1 CSM Rutilus rutilus cDNA clone 51h1...    56   0.002  1
(DT346743) JGI_CAAX10110.fwd CAAX Pimephales promelas testis...    56   0.002  1
(DT346742) JGI_CAAX10110.rev CAAX Pimephales promelas testis...    56   0.002  1
(DT344778) JGI_CAAX8996.fwd CAAX Pimephales promelas testis ...    56   0.002  1
(DT344777) JGI_CAAX8996.rev CAAX Pimephales promelas testis ...    56   0.002  1

>(AC115613) Dictyostelium discoideum chromosome 2 map 209116-215573
            strain AX4, complete sequence.
          Length = 6457

 Score = 1362 bits (687), Expect = 0.0
 Identities = 687/687 (100%)
 Strand = Plus / Minus


Query: 1    ttttaaaattaacaaataaatattgtcttgttggacaatgtggaagtaaacaatttttac 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4736 ttttaaaattaacaaataaatattgtcttgttggacaatgtggaagtaaacaatttttac 4677


Query: 61   atacagtagagaatagattagcagatcatattccagttgtagagacaagtattgcaggta 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4676 atacagtagagaatagattagcagatcatattccagttgtagagacaagtattgcaggta 4617


Query: 121  cacgtattgttggtcgtttatcagcaggaaataagaatggtttattattaccaaatacat 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4616 cacgtattgttggtcgtttatcagcaggaaataagaatggtttattattaccaaatacat 4557


Query: 181  gtaccgatcaagaattacaacaaattagaaactcattaccagatgatgtcgtagtacaaa 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4556 gtaccgatcaagaattacaacaaattagaaactcattaccagatgatgtcgtagtacaaa 4497


Query: 241  gaattgaagagaaattctcagcattgggtaactgtatcgccacaaatgattatgttgcat 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4496 gaattgaagagaaattctcagcattgggtaactgtatcgccacaaatgattatgttgcat 4437


Query: 301  tggtacacccagatatcgatagagagaccgaagagatcattgcagatgttttaggtgttg 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4436 tggtacacccagatatcgatagagagaccgaagagatcattgcagatgttttaggtgttg 4377


Query: 361  aagttttcagacaaaccgtctctggtaatgttttagttggtacctattgtgctctcacaa 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4376 aagttttcagacaaaccgtctctggtaatgttttagttggtacctattgtgctctcacaa 4317


Query: 421  atcaaggtgctctcgttcatccaatgacctcaatcgccgatcaagatgagttatcatcac 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4316 atcaaggtgctctcgttcatccaatgacctcaatcgccgatcaagatgagttatcatcac 4257


Query: 481  tccttcaagttcctttagtcgctggtaccgtcaatcgtggtaatgaatgtgttgccgctg 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4256 tccttcaagttcctttagtcgctggtaccgtcaatcgtggtaatgaatgtgttgccgctg 4197


Query: 541  gttgtgtagttaatgattggactgccatcgttggtgctgataccactgccactgaaatct 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4196 gttgtgtagttaatgattggactgccatcgttggtgctgataccactgccactgaaatct 4137


Query: 601  ctgtcattgaatctatctttgctcttcaaggctctaaaccatcaaacattattaataata 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4136 ctgtcattgaatctatctttgctcttcaaggctctaaaccatcaaacattattaataata 4077


Query: 661  ttagaaattcaattgttgataatgtat 687
            |||||||||||||||||||||||||||
Sbjct: 4076 ttagaaattcaattgttgataatgtat 4050

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 754,969,884
Number of extensions: 42888390
Number of successful extensions: 3381493
Number of sequences better than 10.0: 645
Length of query: 716
Length of database: 98,766,808,389
Length adjustment: 24
Effective length of query: 692
Effective length of database: 100,704,341,533
Effective search space: 69687404340836
Effective search space used: 69687404340836
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.15
Homology vs Protein 
Query= Contig-U15206-1 (Contig-U15206-1Q) /CSM_Contig/Contig-U15206-1Q.Seq.d
         (716 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q551M2) RecName: Full=Probable eukaryotic translation initiatio...   422   e-117
EF144189_1(EF144189|pid:none) Populus trichocarpa clone PX0011_B...   314   2e-84
EF081656_1(EF081656|pid:none) Picea sitchensis clone WS0285_B13 ...   312   7e-84
AK074012_1(AK074012|pid:none) Oryza sativa Japonica Group cDNA c...   310   4e-83
AM468089_2(AM468089|pid:none) Vitis vinifera contig VV78X149635....   310   4e-83
AL161667_3(AL161667|pid:none) Arabidopsis thaliana DNA chromosom...   309   6e-83
BT037573_1(BT037573|pid:none) Zea mays full-length cDNA clone ZM...   308   1e-82
BT051401_1(BT051401|pid:none) Medicago truncatula clone MTYF1_F2...   306   4e-82
EF148493_1(EF148493|pid:none) Populus trichocarpa x Populus delt...   302   8e-81
CR382137_168(CR382137|pid:none) Debaryomyces hansenii strain CBS...   300   2e-80
FN392319_100(FN392319|pid:none) Pichia pastoris GS115 chromosome...   300   2e-80
(Q12522) RecName: Full=Eukaryotic translation initiation factor ...   300   2e-80
CR380957_103(CR380957|pid:none) Candida glabrata strain CBS138 c...   300   4e-80
FM992695_621(FM992695|pid:none) Candida dubliniensis CD36 chromo...   299   7e-80
EU955538_1(EU955538|pid:none) Zea mays clone 1535990 eukaryotic ...   298   1e-79
AK103139_1(AK103139|pid:none) Oryza sativa Japonica Group cDNA c...   296   3e-79
CP000501_117(CP000501|pid:none) Pichia stipitis CBS 6054 chromos...   295   7e-79
CP001574_597(CP001574|pid:none) Micromonas sp. RCC299 chromosome...   295   1e-78
AE017350_61(AE017350|pid:none) Cryptococcus neoformans var. neof...   294   2e-78
AK152215_1(AK152215|pid:none) Mus musculus bone marrow macrophag...   293   5e-78
AK151559_1(AK151559|pid:none) Mus musculus bone marrow macrophag...   293   5e-78
BC105764_1(BC105764|pid:none) Rattus norvegicus eukaryotic trans...   293   5e-78
AF108462_1(AF108462|pid:none) Mus musculus b4 integrin interacto...   291   1e-77
(P56537) RecName: Full=Eukaryotic translation initiation factor ...   291   2e-77
AY890841_1(AY890841|pid:none) Synthetic construct Homo sapiens c...   291   2e-77
BT076778_1(BT076778|pid:none) Caligus rogercresseyi clone crog-e...   289   7e-77
AK152832_1(AK152832|pid:none) Mus musculus bone marrow macrophag...   288   9e-77
(Q9TU47) RecName: Full=Eukaryotic translation initiation factor ...   288   1e-76
BT078180_1(BT078180|pid:none) Lepeophtheirus salmonis Pacific fo...   288   1e-76
AY542967_1(AY542967|pid:none) Bigelowiella natans translation in...   288   1e-76
BC049488_1(BC049488|pid:none) Danio rerio eukaryotic translation...   288   2e-76
AF289541_1(AF289541|pid:none) Homo sapiens p27BBP protein (ITGB4...   287   3e-76
BT078169_1(BT078169|pid:none) Lepeophtheirus salmonis Pacific fo...   287   3e-76
CP000582_331(CP000582|pid:none) Ostreococcus lucimarinus CCE9901...   286   3e-76
BT078548_1(BT078548|pid:none) Lepeophtheirus salmonis Pacific fo...   286   3e-76
BT073291_1(BT073291|pid:none) Oncorhynchus mykiss clone omyk-evn...   286   4e-76
AJ719842_1(AJ719842|pid:none) Gallus gallus mRNA for hypothetica...   285   7e-76
BT081070_1(BT081070|pid:none) Caligus clemensi clone ccle-evs-50...   285   7e-76
AM270390_3(AM270390|pid:none) Aspergillus niger contig An17c0080...   281   2e-74
BT081594_1(BT081594|pid:none) Rana catesbeiana clone rcat-evr-50...   280   3e-74
CU633900_625(CU633900|pid:none) Podospora anserina genomic DNA c...   278   1e-73
AM920435_112(AM920435|pid:none) Penicillium chrysogenum Wisconsi...   275   8e-73
AP002862_13(AP002862|pid:none) Oryza sativa Japonica Group genom...   272   7e-72
FN319769_1(FN319769|pid:none) Schistosoma japonicum isolate Anhu...   265   1e-69
AY223380_1(AY223380|pid:none) Schistosoma japonicum clone ZZZ251...   265   1e-69
AP007150_552(AP007150|pid:none) Aspergillus oryzae RIB40 genomic...   264   2e-69
(O81920) RecName: Full=Eukaryotic translation initiation factor ...   257   3e-67
AM910994_200(AM910994|pid:none) Plasmodium knowlesi strain H chr...   254   2e-66
AL844509_324(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...   253   5e-66
AM494972_101(AM494972|pid:none) Leishmania braziliensis chromoso...   253   5e-66
CT005272_92(CT005272|pid:none) Leishmania major strain Friedlin,...   252   9e-66
AY123141_1(AY123141|pid:none) Griffithsia japonica translation i...   250   3e-65
CR940348_630(CR940348|pid:none) Theileria annulata strain Ankara...   247   3e-64
AF228511_3(AF228511|pid:none) Trypanosoma cruzi putative DEAH-bo...   245   1e-63
(O62106) RecName: Full=Eukaryotic translation initiation factor ...   243   6e-63
AL590444_77(AL590444|pid:none) chromosome IV of strain GB-M1 of ...   222   8e-57
FN357597_6(FN357597|pid:none) Schistosoma mansoni genome sequenc...   206   6e-52
CP000882_6(CP000882|pid:none) Hemiselmis andersenii chromosome 2...   199   7e-50
AY811713_1(AY811713|pid:none) Schistosoma japonicum SJCHGC06053 ...   189   6e-47
FN319768_1(FN319768|pid:none) Schistosoma japonicum isolate Anhu...   177   3e-43
AF179902_1(AF179902|pid:none) Biomphalaria glabrata integrin int...   155   9e-37
AF165818_136(AF165818|pid:none) Guillardia theta nucleomorph chr...   147   3e-34
FN319767_1(FN319767|pid:none) Schistosoma japonicum isolate Anhu...   138   1e-31
(Q2NGQ7) RecName: Full=Translation initiation factor 6;         ...   127   4e-28
(Q8U3S8) RecName: Full=Translation initiation factor 6;         ...   124   3e-27
(Q8PYQ3) RecName: Full=Translation initiation factor 6;         ...   122   8e-27
AJ627421_7(AJ627421|pid:none) Uncultured crenarchaeote genomic f...   122   1e-26
(Q9YD27) RecName: Full=Translation initiation factor 6;         ...   121   2e-26
(O58264) RecName: Full=Translation initiation factor 6;         ...   119   9e-26
(Q9UYI6) RecName: Full=Translation initiation factor 6;         ...   115   1e-24
(Q12ZJ5) RecName: Full=Translation initiation factor 6;         ...   114   4e-24
(Q5JGT4) RecName: Full=Translation initiation factor 6;         ...   112   9e-24
(Q46FA1) RecName: Full=Translation initiation factor 6;         ...   112   9e-24
(Q8TIN4) RecName: Full=Translation initiation factor 6;         ...   112   1e-23
CP001399_1737(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,...   111   3e-23
CP001398_1683(CP001398|pid:none) Thermococcus gammatolerans EJ3,...   110   4e-23
CP001400_1609(CP001400|pid:none) Sulfolobus islandicus M.14.25, ...   110   4e-23
CP000866_233(CP000866|pid:none) Nitrosopumilus maritimus SCM1, c...   109   1e-22
(B6YWY2) RecName: Full=Translation initiation factor 6;         ...   108   2e-22
(Q980G0) RecName: Full=Translation initiation factor 6;         ...   108   2e-22
EF583999_20(EF583999|pid:none) Uncultured haloarchaeon clone fos...   106   6e-22
(O27648) RecName: Full=Translation initiation factor 6;         ...   104   2e-21
(O28214) RecName: Full=Translation initiation factor 6;         ...   103   4e-21
(Q8ZTU1) RecName: Full=Translation initiation factor 6;         ...   103   7e-21
CP001365_819(CP001365|pid:none) Halorubrum lacusprofundi ATCC 49...   103   7e-21
(Q3ITD5) RecName: Full=Translation initiation factor 6;         ...   102   9e-21
(A6UR54) RecName: Full=Translation initiation factor 6;         ...   102   2e-20
(A4WL95) RecName: Full=Translation initiation factor 6;         ...   101   2e-20
(Q6M156) RecName: Full=Translation initiation factor 6;         ...   101   3e-20
CP001338_517(CP001338|pid:none) Candidatus Methanosphaerula palu...   101   3e-20
(A3CWZ4) RecName: Full=Translation initiation factor 6;         ...   100   4e-20
CP000867_878(CP000867|pid:none) Methanococcus maripaludis C6, co...   100   8e-20
CP000816_287(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co...   100   8e-20
CP000852_194(CP000852|pid:none) Caldivirga maquilingensis IC-167...   100   8e-20
EU016647_52(EU016647|pid:none) Uncultured Group I marine crenarc...    99   1e-19
CP000477_1534(CP000477|pid:none) Methanosaeta thermophila PT, co...    99   1e-19
(A6VI48) RecName: Full=Translation initiation factor 6;         ...    99   1e-19
CP001014_1626(CP001014|pid:none) Thermoproteus neutrophilus V24S...    99   2e-19
(A4G0C9) RecName: Full=Translation initiation factor 6;         ...    97   4e-19
EU016599_6(EU016599|pid:none) Uncultured Group I marine crenarch...    97   4e-19
CP000504_452(CP000504|pid:none) Pyrobaculum islandicum DSM 4184,...    97   6e-19
CP000575_1071(CP000575|pid:none) Staphylothermus marinus F1, com...    95   2e-18
(Q97CU0) RecName: Full=Translation initiation factor 6;         ...    95   2e-18
(P38619) RecName: Full=Translation initiation factor 6;         ...    94   3e-18
(Q0W5H2) RecName: Full=Translation initiation factor 6;         ...    93   7e-18
AF268611_4(AF268611|pid:none) Uncultured marine group II euryarc...    92   2e-17
AL445063_54(AL445063|pid:none) Thermoplasma acidophilum complete...    92   2e-17
CP001140_1107(CP001140|pid:none) Desulfurococcus kamchatkensis 1...    90   6e-17
(A5UL31) RecName: Full=Translation initiation factor 6;         ...    84   3e-15
AL929233_6(AL929233|pid:none) Mouse DNA sequence from clone RP23...    84   4e-15
S53700(S53700;S41965) hypothetical protein 1 - Sulfolobus acidoc...    83   1e-14
FN314848_1(FN314848|pid:none) Schistosoma japonicum isolate Anhu...    59   1e-07
BX004872_1(BX004872|pid:none) Mouse DNA sequence from clone RP23...    57   6e-07
AX970956_1(AX970956|pid:none) Sequence 1759 from Patent EP110480...    56   1e-06
BA000012_2953(BA000012|pid:none) Mesorhizobium loti MAFF303099 D...    37   0.46
AY087671_1(AY087671|pid:none) Arabidopsis thaliana clone 37542 m...    34   3.9
AM920436_433(AM920436|pid:none) Penicillium chrysogenum Wisconsi...    34   3.9
CP000509_3171(CP000509|pid:none) Nocardioides sp. JS614, complet...    34   5.1
CP001358_155(CP001358|pid:none) Desulfovibrio desulfuricans subs...    33   6.7
AB182929_1(AB182929|pid:none) Citrullus lanatus mRNA for eukaryo...    33   8.7
CP001628_927(CP001628|pid:none) Micrococcus luteus NCTC 2665, co...    33   8.7

>(Q551M2) RecName: Full=Probable eukaryotic translation initiation
           factor 6;          Short=eIF-6;
          Length = 244

 Score =  422 bits (1086), Expect = e-117
 Identities = 213/213 (100%), Positives = 213/213 (100%)
 Frame = +3

Query: 3   LKLTNKYCLVGQCGSKQFLHTVENRLADHIPVVETSIAGTRIVGRLSAGNKNGLLLPNTC 182
           LKLTNKYCLVGQCGSKQFLHTVENRLADHIPVVETSIAGTRIVGRLSAGNKNGLLLPNTC
Sbjct: 17  LKLTNKYCLVGQCGSKQFLHTVENRLADHIPVVETSIAGTRIVGRLSAGNKNGLLLPNTC 76

Query: 183 TDQELQQIRNSLPDDVVVQRIEEKFSALGNCIATNDYVALVHPDIDRETEEIIADVLGVE 362
           TDQELQQIRNSLPDDVVVQRIEEKFSALGNCIATNDYVALVHPDIDRETEEIIADVLGVE
Sbjct: 77  TDQELQQIRNSLPDDVVVQRIEEKFSALGNCIATNDYVALVHPDIDRETEEIIADVLGVE 136

Query: 363 VFRQTVSGNVLVGTYCALTNQGALVHPMTSIADQDELSSLLQVPLVAGTVNRGNECVAAG 542
           VFRQTVSGNVLVGTYCALTNQGALVHPMTSIADQDELSSLLQVPLVAGTVNRGNECVAAG
Sbjct: 137 VFRQTVSGNVLVGTYCALTNQGALVHPMTSIADQDELSSLLQVPLVAGTVNRGNECVAAG 196

Query: 543 CVVNDWTAIVGADTTATEISVIESIFALQGSKP 641
           CVVNDWTAIVGADTTATEISVIESIFALQGSKP
Sbjct: 197 CVVNDWTAIVGADTTATEISVIESIFALQGSKP 229

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,020,391,336
Number of extensions: 18998312
Number of successful extensions: 52284
Number of sequences better than 10.0: 121
Number of HSP's gapped: 52126
Number of HSP's successfully gapped: 143
Length of query: 238
Length of database: 1,051,180,864
Length adjustment: 125
Effective length of query: 113
Effective length of database: 646,610,989
Effective search space: 73067041757
Effective search space used: 73067041757
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.84  gvh: 0.52  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U15206-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0