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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U15199-1
Contig ID Contig-U15199-1
Contig update 2004. 6.11
Contig sequence 
>Contig-U15199-1 (Contig-U15199-1Q) /CSM_Contig/Contig-U15199-1Q.Seq.d
CAGCTGCAAGAGTATATGATTATCTTTTATCAGCTCATCCAATGGCATCG
ATATATCTCTCTGTTTGTGTTATTACCAGTCAAAGAGAAACTTTATTAAA
TTTGGAATGTTCTTTTGATAGTATTCATGCATTTTTCACTTCAAATTTAC
CTGAATTGGATTTTGATAAAATTATAAAGCAAACAGATTCTCTTTTAGAA
AAAATTACTCCTTCAAAATTACAATCCTCTTCAAAAGTTTATCTTTTACC
AGAGTCTCAATTAAATAGGTACCCATATGATTGGATGATATTTAATAATA
ATAATACCACTACTAATAGCAAATCAAGTAAATTAATAACAAATAACAAA
GGAACAAACCAAAAAAGACGACAAATATATAAATTTATTTTCTTTATTCT
ATTTGGATCAATATCATTGTTTGGGACCTTTGTATTTTTATCAATTAAAT
CTAACAAATACATTTAAACATATAAACTCTTTTCTATCACCACTTTTATT
CAATTTATTTAATAATCGTTTTAATCAAAATAATATCACCAATGGTGAAA
CAGTTTCCAATTTTAATCAATAATAAAATTAAGTTTAAATTTTTATTATG
AAAAAAAAAAAAAAAAAAAAAAAAA
Gap no gap
Contig length 625
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 22453
End point 23053
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U15199
List of clone(s) 

est1=FC-BK02E,1,625
est2=FC-BK20E,1,625
Translated Amino Acid sequence 
AARVYDYLLSAHPMASIYLSVCVITSQRETLLNLECSFDSIHAFFTSNLPELDFDKIIKQ
TDSLLEKITPSKLQSSSKVYLLPESQLNRYPYDWMIFNNNNTTTNSKSSKLITNNKGTNQ
KRRQIYKFIFFILFGSISLFGTFVFLSIKSNKYI*tyklfsittfiqfi**sf*sk*yhq
w*nsfqf*siiklslnfyyekkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
qlqeymiifyqliqwhryislfvllpvkekly*iwnvllivfmhfslqiylnwilikl*s
kqilf*kklllqnynplqkfifyqsln*igthmig*yliiiipllianqvn**qitkeqt
kkddkyinlfslfyldqyhclgplyfyqlnltntfkhinsflspllfnlfnnrfnqnnit
ngetvsnfnq**n*v*ifimkkkkkkkk


Frame B:
scksi*lsfisssngidislclcyyqskrnfikfgmff**yscifhfkft*igf**nyka
nrfsfrknysfkitilfkslsftrvsik*vpi*lddi****yhy**qik*innk*qrnkp
kkttni*iyflysiwiniivwdlcifin*i*qihlni*tlfyhhfysiyliivlikiisp
mvkqfpilinnkikfkfll*kkkkkkkk


Frame C:
AARVYDYLLSAHPMASIYLSVCVITSQRETLLNLECSFDSIHAFFTSNLPELDFDKIIKQ
TDSLLEKITPSKLQSSSKVYLLPESQLNRYPYDWMIFNNNNTTTNSKSSKLITNNKGTNQ
KRRQIYKFIFFILFGSISLFGTFVFLSIKSNKYI*tyklfsittfiqfi**sf*sk*yhq
w*nsfqf*siiklslnfyyekkkkkkk
own update 2004. 6.23
Homology vs CSM-cDNA 
Query= Contig-U15199-1 (Contig-U15199-1Q)
/CSM_Contig/Contig-U15199-1Q.Seq.d
         (625 letters)

Database: CSM
           8402 sequences; 8,075,542 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U15199-1 (Contig-U15199-1Q) /CSM_Contig/Conti...  1189  0.0
Contig-U08537-1 (Contig-U08537-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U01337-1 (Contig-U01337-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U04032-1 (Contig-U04032-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U16588-1 (Contig-U16588-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U15932-1 (Contig-U15932-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U15918-1 (Contig-U15918-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U15906-1 (Contig-U15906-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U15723-1 (Contig-U15723-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U13324-1 (Contig-U13324-1Q) /CSM_Contig/Conti...    38  0.016

>Contig-U15199-1 (Contig-U15199-1Q) /CSM_Contig/Contig-U15199-1Q.Seq.d
          Length = 625

 Score = 1189 bits (600), Expect = 0.0
 Identities = 600/600 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagctgcaagagtatatgattatcttttatcagctcatccaatggcatcgatatatctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cagctgcaagagtatatgattatcttttatcagctcatccaatggcatcgatatatctct 60

                                                                       
Query: 61  ctgtttgtgttattaccagtcaaagagaaactttattaaatttggaatgttcttttgata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctgtttgtgttattaccagtcaaagagaaactttattaaatttggaatgttcttttgata 120

                                                                       
Query: 121 gtattcatgcatttttcacttcaaatttacctgaattggattttgataaaattataaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtattcatgcatttttcacttcaaatttacctgaattggattttgataaaattataaagc 180

                                                                       
Query: 181 aaacagattctcttttagaaaaaattactccttcaaaattacaatcctcttcaaaagttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaacagattctcttttagaaaaaattactccttcaaaattacaatcctcttcaaaagttt 240

                                                                       
Query: 241 atcttttaccagagtctcaattaaataggtacccatatgattggatgatatttaataata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atcttttaccagagtctcaattaaataggtacccatatgattggatgatatttaataata 300

                                                                       
Query: 301 ataataccactactaatagcaaatcaagtaaattaataacaaataacaaaggaacaaacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ataataccactactaatagcaaatcaagtaaattaataacaaataacaaaggaacaaacc 360

                                                                       
Query: 361 aaaaaagacgacaaatatataaatttattttctttattctatttggatcaatatcattgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaaaaagacgacaaatatataaatttattttctttattctatttggatcaatatcattgt 420

                                                                       
Query: 421 ttgggacctttgtatttttatcaattaaatctaacaaatacatttaaacatataaactct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttgggacctttgtatttttatcaattaaatctaacaaatacatttaaacatataaactct 480

                                                                       
Query: 481 tttctatcaccacttttattcaatttatttaataatcgttttaatcaaaataatatcacc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tttctatcaccacttttattcaatttatttaataatcgttttaatcaaaataatatcacc 540

                                                                       
Query: 541 aatggtgaaacagtttccaattttaatcaataataaaattaagtttaaatttttattatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aatggtgaaacagtttccaattttaatcaataataaaattaagtttaaatttttattatg 600


>Contig-U08537-1 (Contig-U08537-1Q) /CSM_Contig/Contig-U08537-1Q.Seq.d
          Length = 383

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 293 taataataataataccactact 314
           ||||||||||||||||||||||
Sbjct: 11  taataataataataccactact 32


>Contig-U01337-1 (Contig-U01337-1Q) /CSM_Contig/Contig-U01337-1Q.Seq.d
          Length = 814

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 292 ttaataataataataccactac 313
           ||||||||||||||||||||||
Sbjct: 21  ttaataataataataccactac 42


 Score = 30.2 bits (15), Expect = 3.8
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 293 taataataataatac 307
           |||||||||||||||
Sbjct: 707 taataataataatac 721


  Database: CSM
    Posted date:  Jun 21, 2004  1:35 PM
  Number of letters in database: 8,075,542
  Number of sequences in database:  8402
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 40,506
Number of Sequences: 8402
Number of extensions: 40506
Number of successful extensions: 14313
Number of sequences better than 10.0: 801
length of query: 625
length of database: 8,075,542
effective HSP length: 16
effective length of query: 609
effective length of database: 7,941,110
effective search space: 4836135990
effective search space used: 4836135990
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.15
Homology vs DNA 
Query= Contig-U15199-1 (Contig-U15199-1Q) /CSM_Contig/Contig-U15199-1Q.Seq.d
         (625 letters)

Database: ddbj_B
           98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU284785) Dictyostelium discoideum gamete cDNA clone:FC-BK2...   632   0.0    3
(AU284764) Dictyostelium discoideum gamete cDNA clone:FC-BK0...   632   0.0    3
(AF200854) Drosophila simulans isolate MDW86 mitochondrion, ...    44   3e-06  6
(AF200853) Drosophila simulans isolate MD221 mitochondrion, ...    44   3e-06  6
(AF200852) Drosophila simulans isolate MD199 mitochondrion, ...    44   3e-06  6
(AF200851) Drosophila simulans isolate MD112 mitochondrion, ...    44   3e-06  6
(AF200850) Drosophila simulans isolate MD111 mitochondrion, ...    44   3e-06  6
(AF200849) Drosophila simulans isolate RU259 mitochondrion, ...    44   3e-06  6
(AF200848) Drosophila simulans isolate RU07 mitochondrion, c...    44   3e-06  6
(AF200847) Drosophila simulans isolate RU01 mitochondrion, c...    44   3e-06  6
(AF200846) Drosophila simulans isolate RU00 mitochondrion, c...    44   3e-06  6
(AF200831) Drosophila mauritiana isolate BG1 mitochondrion, ...    44   3e-06  6
(AF200830) Drosophila mauritiana isolate G52 mitochondrion, ...    44   3e-06  6
(AF200843) Drosophila simulans isolate MD225 mitochondrion, ...    44   4e-05  5
(AF200842) Drosophila simulans isolate MD106 mitochondrion, ...    44   4e-05  5
(AY518674) Drosophila simulans isolate AU023 mitochondrion, ...    44   4e-05  5
(AY518673) Drosophila simulans isolate KY201 mitochondrion, ...    44   4e-05  5
(AY518672) Drosophila simulans isolate KY215 mitochondrion, ...    44   4e-05  5
(AY518671) Drosophila simulans isolate KY045 mitochondrion, ...    44   4e-05  5
(AY518670) Drosophila simulans isolate KY007 mitochondrion, ...    44   4e-05  5
(AF200845) Drosophila simulans isolate RU35 mitochondrion, c...    44   4e-05  5
(AF200844) Drosophila simulans isolate SC00 mitochondrion, c...    44   4e-05  5
(AF200841) Drosophila simulans isolate DSR mitochondrion, co...    44   4e-05  5
(AF200840) Drosophila simulans isolate DSW mitochondrion, co...    44   4e-05  5
(AF200839) Drosophila simulans isolate C167 mitochondrion, c...    44   4e-05  5
(EI781935) CHORI518004J10TF BAC library from the breast cell...    44   3e-04  2
(AF200838) Drosophila simulans isolate NC48 mitochondrion, c...    44   5e-04  5
(AF200837) Drosophila simulans isolate NC37 mitochondrion, c...    44   5e-04  5
(AF200833) Drosophila simulans isolate TT00 mitochondrion, c...    44   5e-04  5
(AF200836) Drosophila simulans isolate HW09 mitochondrion, c...    44   5e-04  5
(AF200835) Drosophila simulans isolate HW00 mitochondrion, c...    44   5e-04  5
(AF200834) Drosophila simulans isolate TT01 mitochondrion, c...    44   5e-04  5
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)...    42   0.001  13
(EU626441) Gossypioides kirkii clone BAC 031A10, complete se...    34   0.002  9
(EA414792) Sequence 16900 from patent US 7319142.                  54   0.007  1
(EA408903) Sequence 4895 from patent US 7319142.                   54   0.007  1
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    32   0.007  17
(AL844509) Plasmodium falciparum chromosome 13.                    38   0.008  10
(AF538053) Monosiga brevicollis mitochondrion, complete genome.    36   0.013  9
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    34   0.013  14
(DC225009) Plasmodium berghei strain ANKA cDNA clone:SG00152...    42   0.015  2
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    36   0.016  2
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    36   0.023  7
(AC105755) Homo sapiens BAC clone RP11-46H14 from 4, complet...    44   0.027  5
(BX950211) Zebrafish DNA sequence from clone DKEY-57M14 in l...    36   0.030  6
(B76875) T27D8TF TAMU Arabidopsis thaliana genomic clone T27...    30   0.030  4
(DB757755) Apis mellifera head cDNA, RIKEN full-length enric...    34   0.036  3
(CP000726) Clostridium botulinum A str. ATCC 19397, complete...    36   0.044  18
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g...    36   0.047  18
(AX344573) Sequence 24 from Patent WO0200932.                      36   0.048  12
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    38   0.057  5
(AF200832) Drosophila sechellia type line mitochondrion, com...    44   0.058  5
(EY325627) CAWY11052.rev CAWY Helobdella robusta Subtracted ...    40   0.058  2
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    36   0.062  10
(AC216669) Oryza punctata clone OP__Ba0034J15, complete sequ...    40   0.064  2
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    34   0.065  2
(CP000963) Clostridium botulinum A3 str. Loch Maree plasmid ...    34   0.067  11
(DD010735) Diagnosis of known genetic Parameters within the ...    40   0.079  13
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   0.080  6
(ER581382) 1093015841088 Global-Ocean-Sampling_GS-36-01-01-2...    34   0.091  3
(AC168631) Strongylocentrotus purpuratus clone R3-3018O21, W...    46   0.091  6
(CP000727) Clostridium botulinum A str. Hall, complete genome.     36   0.10   17
(EJ490978) 1095403538871 Global-Ocean-Sampling_GS-28-01-01-1...    50   0.10   1
(EJ168458) 1092344074274 Global-Ocean-Sampling_GS-27-01-01-1...    50   0.10   1
(EI297192) GM_WBc0021K15.r GM_WBc Glycine max genomic clone ...    50   0.10   1
(CR536612) Zebrafish DNA sequence from clone DKEY-1O1 in lin...    36   0.11   7
(AL844506) Plasmodium falciparum chromosome  7.                    36   0.12   9
(AC161747) Rhinolophus ferrumequinum clone VMRC7-349N22, WOR...    42   0.14   3
(CU459162) Zebrafish DNA sequence from clone CH73-50D8 in li...    44   0.16   5
(AL079306) Human chromosome 14 DNA sequence BAC R-216F9 of l...    42   0.16   3
(U60168) Dictyostelium discoideum PrtC (prtC) gene, complete...    32   0.16   4
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1...    32   0.17   10
(CU915542) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   0.18   4
(CU855850) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   0.18   6
(EC096128) AAE00003456 Acetabularia acetabulum Non-normalize...    38   0.19   3
(BX649386) Zebrafish DNA sequence from clone RP71-18A24 in l...    38   0.19   8
(AL049181) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    34   0.19   9
(AX344569) Sequence 20 from Patent WO0200932.                      38   0.20   10
(EH213027) USDA-FP_175817 WHMH (pink hibiscus mealybug) Maco...    38   0.22   3
(EH216091) USDA-FP_178880 WHMH (pink hibiscus mealybug) Maco...    38   0.22   3
(EH213327) USDA-FP_176117 WHMH (pink hibiscus mealybug) Maco...    38   0.22   3
(AC006280) Plasmodium falciparum chromosome 12 clone PFYAC72...    38   0.23   7
(CT027717) Zebrafish DNA sequence from clone CH211-125I17 in...    36   0.24   4
(EH213697) USDA-FP_176484 WHMH (pink hibiscus mealybug) Maco...    38   0.24   3
(EH212390) USDA-FP_175182 WHMH (pink hibiscus mealybug) Maco...    38   0.24   3
(AL391716) Arabidopsis thaliana DNA chromosome 5, BAC clone ...    44   0.25   5
(AC111580) Rattus norvegicus clone CH230-72O8, WORKING DRAFT...    44   0.25   3
(L06178) Apis mellifera ligustica complete mitochondrial gen...    34   0.25   5
(BX294103) Zebrafish DNA sequence from clone CH211-257A8 in ...    46   0.26   4
(EK548922) 1095516106924 Global-Ocean-Sampling_GS-32-01-01-1...    34   0.26   3
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    38   0.27   6
(EK156034) 1095458006101 Global-Ocean-Sampling_GS-31-01-01-1...    40   0.28   2
(AC214631) Populus trichocarpa clone POP071-C21, complete se...    32   0.28   7
(FG222895) Aats00165 Antheraea assama fifth instar larval te...    34   0.31   2
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    34   0.32   6
(AC093692) Homo sapiens chromosome UNK clone RP11-751O7, ***...    40   0.34   8
(AC099202) Rattus norvegicus clone CH230-125E19, *** SEQUENC...    36   0.35   7
(AC230100) Bos taurus clone CH240-522A14, WORKING DRAFT SEQU...    48   0.37   3
(EU275727) Dictyostelium fasciculatum strain SH3 mitochondri...    48   0.41   1
(ET924147) CHO_OF218xo13r1.ab1 CHO_OF Nicotiana tabacum geno...    48   0.41   1

>(AU284785) Dictyostelium discoideum gamete cDNA clone:FC-BK20,
           single read.
          Length = 624

 Score =  632 bits (319), Expect(3) = 0.0
 Identities = 319/319 (100%)
 Strand = Plus / Plus


Query: 1   cagctgcaagagtatatgattatcttttatcagctcatccaatggcatcgatatatctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cagctgcaagagtatatgattatcttttatcagctcatccaatggcatcgatatatctct 60


Query: 61  ctgtttgtgttattaccagtcaaagagaaactttattaaatttggaatgttcttttgata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctgtttgtgttattaccagtcaaagagaaactttattaaatttggaatgttcttttgata 120


Query: 121 gtattcatgcatttttcacttcaaatttacctgaattggattttgataaaattataaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtattcatgcatttttcacttcaaatttacctgaattggattttgataaaattataaagc 180


Query: 181 aaacagattctcttttagaaaaaattactccttcaaaattacaatcctcttcaaaagttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaacagattctcttttagaaaaaattactccttcaaaattacaatcctcttcaaaagttt 240


Query: 241 atcttttaccagagtctcaattaaataggtacccatatgattggatgatatttaataata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atcttttaccagagtctcaattaaataggtacccatatgattggatgatatttaataata 300


Query: 301 ataataccactactaatag 319
           |||||||||||||||||||
Sbjct: 301 ataataccactactaatag 319

 Score =  289 bits (146), Expect(3) = 0.0
 Identities = 146/146 (100%)
 Strand = Plus / Plus


Query: 455 caaatacatttaaacatataaactcttttctatcaccacttttattcaatttatttaata 514
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 caaatacatttaaacatataaactcttttctatcaccacttttattcaatttatttaata 513


Query: 515 atcgttttaatcaaaataatatcaccaatggtgaaacagtttccaattttaatcaataat 574
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 atcgttttaatcaaaataatatcaccaatggtgaaacagtttccaattttaatcaataat 573


Query: 575 aaaattaagtttaaatttttattatg 600
           ||||||||||||||||||||||||||
Sbjct: 574 aaaattaagtttaaatttttattatg 599

 Score =  137 bits (69), Expect(3) = 0.0
 Identities = 69/69 (100%)
 Strand = Plus / Plus


Query: 384 tttattttctttattctatttggatcaatatcattgtttgggacctttgtatttttatca 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttattttctttattctatttggatcaatatcattgtttgggacctttgtatttttatca 443


Query: 444 attaaatct 452
           |||||||||
Sbjct: 444 attaaatct 452

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 891,519,706
Number of extensions: 67432402
Number of successful extensions: 8818146
Number of sequences better than 10.0: 648
Length of query: 625
Length of database: 98,766,808,389
Length adjustment: 23
Effective length of query: 602
Effective length of database: 100,802,567,956
Effective search space: 60683145909512
Effective search space used: 60683145909512
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.15
Homology vs Protein 
Query= Contig-U15199-1 (Contig-U15199-1Q) /CSM_Contig/Contig-U15199-1Q.Seq.d
         (625 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC041214_1(BC041214|pid:none) Xenopus laevis hypothetical protei...    51   2e-05
BC054561_1(BC054561|pid:none) Danio rerio zgc:63863, mRNA (cDNA ...    49   9e-05
AK127062_1(AK127062|pid:none) Homo sapiens cDNA FLJ45119 fis, cl...    48   3e-04
AK168985_1(AK168985|pid:none) Mus musculus 17 days pregnant adul...    48   3e-04
(Q9D9I4) RecName: Full=TBC1 domain family member 20;  &AK006877_...    48   3e-04
AK172349_1(AK172349|pid:none) Mus musculus activated spleen cDNA...    48   3e-04
AK172372_1(AK172372|pid:none) Mus musculus activated spleen cDNA...    48   3e-04
BC096811_1(BC096811|pid:none) Danio rerio TBC1 domain family, me...    47   3e-04
BX324213_5(BX324213|pid:none) Zebrafish DNA sequence from clone ...    47   3e-04
AE013599_16(AE013599|pid:none) Drosophila melanogaster chromosom...    43   0.006
(P38144) RecName: Full=ISWI chromatin-remodeling complex ATPase ...    36   1.0
S46122(S46122)SNF2 protein homolog YBR245c - yeast (Saccharomyce...    36   1.0
FJ362379_19(FJ362379|pid:none) Caenorhabditis sp. PS1010 contig ...    36   1.0
AE017346_351(AE017346|pid:none) Cryptococcus neoformans var. neo...    36   1.0
AE016819_194(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    35   1.7
AK084542_1(AK084542|pid:none) Mus musculus 13 days embryo heart ...    34   2.9
AB185844_1(AB185844|pid:none) Mus musculus 4-B-3 mRNA for hypoth...    34   2.9
AX961930_1(AX961930|pid:none) Sequence 141 from Patent WO0310427...    34   2.9
AX961928_1(AX961928|pid:none) Sequence 139 from Patent WO03104277.     34   2.9
AP009389_1546(AP009389|pid:none) Pelotomaculum thermopropionicum...    34   3.8
AF081810_111(AF081810|pid:none) Lymantria dispar nucleopolyhedro...    34   3.8
EF174330_1(EF174330|pid:none) Bemisia tabaci ultraspiracle prote...    33   5.1
CR380949_58(CR380949|pid:none) Candida glabrata strain CBS138 ch...    33   8.6
AY157931_1(AY157931|pid:none) Leptopilina heterotoma USP-RXR mRN...    33   8.7

>BC041214_1(BC041214|pid:none) Xenopus laevis hypothetical protein
           MGC52691, mRNA (cDNA clone MGC:52691 IMAGE:4682622),
           complete cds.
          Length = 412

 Score = 51.2 bits (121), Expect = 2e-05
 Identities = 22/79 (27%), Positives = 41/79 (51%)
 Frame = +3

Query: 9   RVYDYLLSAHPMASIYLSVCVITSQRETLLNLECSFDSIHAFFTSNLPELDFDKIIKQTD 188
           R+YD+ L+ HP+  IY +  ++  + E +L  EC   S+H   +    +L ++ +I +
Sbjct: 246 RLYDFFLACHPLMPIYFAAVIVLHREEEVLECECDMASVHHLLSKIPQDLPYEILISRAG 305

Query: 189 SLLEKITPSKLQSSSKVYL 245
            L  +  PS+L   + V L
Sbjct: 306 DLFVQFPPSELSREAVVQL 324

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 800,000,720
Number of extensions: 13274484
Number of successful extensions: 29586
Number of sequences better than 10.0: 24
Number of HSP's gapped: 29579
Number of HSP's successfully gapped: 24
Length of query: 208
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 85
Effective length of database: 653,084,107
Effective search space: 55512149095
Effective search space used: 55512149095
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.92  gvh: 0.63  alm: 0.24  top: 0.33  tms: 0.07  mit: 0.35  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.16  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: nuclear
	 16.0 %: cytoplasmic
	 16.0 %: vesicles of secretory system
	 12.0 %: Golgi
	 12.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum
	  4.0 %: vacuolar

>> prediction for Contig-U15199-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 2
FC-IC (SUB) 0