Contig-U15195-1
Contig ID Contig-U15195-1
Contig update 2004. 6.11
Contig sequence
>Contig-U15195-1 (Contig-U15195-1Q) /CSM_Contig/Contig-U15195-1Q.Seq.d
GGTAATAATAATAATGGTATAAGTGATATTCAACTTAGAACTGATTTTGA
ATTAATGGGTAAAAAATTAGGTGAACTTGGTACAGAAAATTATAAATTAG
ATGAAAGAAATAGAACATTAGAATTAAAGAATAGGCAATTAACAGAAGAT
TTGGAAAAGAAATCAAATGCAGTTAGATTATTAGTTTCAAAAACTCAACT
TGGTAAAGCAACCTCTGAAGAAGAAAAAGCTAAAAAAATTAAAAAGTGGT
GGATTTATGGGAAGTTTTTGGAGAAATAATGATCCAAAGATTGCTGCTGA
AATGGTCGAAAAAATGGAAGTTATGTTACAAGAGAATGTTCTTAAAAATT
TCCAACTTTCAAATGATTTAGAATTATTAGGTACTGAAACTGGAAAATTA
AAATCTCAATTATCAATTTATGAATCAATTTTAAAAGAAAATAATATCGA
AAAACCAACTTTTAAAAATTTACATGAAAATTTAAAACCAAATAATTTTG
CACTACTTCAATTCAAATTGGAAGTGAAGAAAATTATAAAATTTAATTAT
TATTATAATATTTTAAAATAAATTAAAAAAAATAAATAAAAAAAACTATA
TATATTATATATTAAATTAAAAA

Gap no gap
Contig length 623
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 728084
End point 728706
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U15195
List of clone(s)

est1=FC-BI11E,1,623
Translated Amino Acid sequence
viiimv*vifnleliln*wvkn*vnlvqkiin*mkeieh*n*rign*qkiwkrnqmqldy
*FQKLNLVKQPLKKKKLKKLKSGGFMGSFWRNNDPKIAAEMVEKMEVMLQENVLKNFQLS
NDLELLGTETGKLKSQLSIYESILKENNIEKPTFKNLHENLKPNNFALLQFKLEVKKIIK
FNYYYNILK*ikknk*kklyilyiklk


Translated Amino Acid sequence (All Frames)
Frame A:
gnnnngisdiqlrtdfelmgkklgelgtenykldernrtlelknrqltedlekksnavrl
lvsktqlgkatseeekakkikkwwiygkflek**skdcc*ngrkngsyvtrecs*kfptf
k*friiry*nwkikisiinl*infkrk*yrktnf*kft*kfktk*fcttsiqigseenyk
i*lll*yfkin*kk*ikktiyiiy*ik


Frame B:
viiimv*vifnleliln*wvkn*vnlvqkiin*mkeieh*n*rign*qkiwkrnqmqldy
*FQKLNLVKQPLKKKKLKKLKSGGFMGSFWRNNDPKIAAEMVEKMEVMLQENVLKNFQLS
NDLELLGTETGKLKSQLSIYESILKENNIEKPTFKNLHENLKPNNFALLQFKLEVKKIIK
FNYYYNILK*ikknk*kklyilyiklk


Frame C:
****wyk*yst*n*f*ing*kir*twyrkl*ir*kk*nirike*ainrrfgkeikcs*ii
sfknstw*snl*rrks*kn*kvvdlwevfgeimiqrlllkwskkwklcykrmflkisnfq
mi*ny*vlklen*nlnyqfmnqf*kkiisknqllkiymki*nqiilhyfnsnwk*rkl*n
liiiiif*nklkkinkknyiyyiln*k


own update 2004. 6.23
Homology vs CSM-cDNA
Query= Contig-U15195-1 (Contig-U15195-1Q)
/CSM_Contig/Contig-U15195-1Q.Seq.d
(623 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U15195-1 (Contig-U15195-1Q) /CSM_Contig/Conti... 442 e-124
Contig-U09510-1 (Contig-U09510-1Q) /CSM_Contig/Conti... 52 1e-06
Contig-U15939-1 (Contig-U15939-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U15932-1 (Contig-U15932-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U15017-1 (Contig-U15017-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U07093-1 (Contig-U07093-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U00653-1 (Contig-U00653-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U14542-1 (Contig-U14542-1Q) /CSM_Contig/Conti... 38 0.016
Contig-U12013-1 (Contig-U12013-1Q) /CSM_Contig/Conti... 38 0.016
Contig-U03883-1 (Contig-U03883-1Q) /CSM_Contig/Conti... 38 0.016

>Contig-U15195-1 (Contig-U15195-1Q) /CSM_Contig/Contig-U15195-1Q.Seq.d
Length = 623

Score = 442 bits (223), Expect = e-124
Identities = 223/223 (100%)
Strand = Plus / Plus


Query: 1 ggtaataataataatggtataagtgatattcaacttagaactgattttgaattaatgggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtaataataataatggtataagtgatattcaacttagaactgattttgaattaatgggt 60


Query: 61 aaaaaattaggtgaacttggtacagaaaattataaattagatgaaagaaatagaacatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaaaaattaggtgaacttggtacagaaaattataaattagatgaaagaaatagaacatta 120


Query: 121 gaattaaagaataggcaattaacagaagatttggaaaagaaatcaaatgcagttagatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaattaaagaataggcaattaacagaagatttggaaaagaaatcaaatgcagttagatta 180


Query: 181 ttagtttcaaaaactcaacttggtaaagcaacctctgaagaag 223
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttagtttcaaaaactcaacttggtaaagcaacctctgaagaag 223


Score = 379 bits (191), Expect = e-105
Identities = 191/191 (100%)
Strand = Plus / Plus


Query: 246 gtggtggatttatgggaagtttttggagaaataatgatccaaagattgctgctgaaatgg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gtggtggatttatgggaagtttttggagaaataatgatccaaagattgctgctgaaatgg 305


Query: 306 tcgaaaaaatggaagttatgttacaagagaatgttcttaaaaatttccaactttcaaatg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tcgaaaaaatggaagttatgttacaagagaatgttcttaaaaatttccaactttcaaatg 365


Query: 366 atttagaattattaggtactgaaactggaaaattaaaatctcaattatcaatttatgaat 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atttagaattattaggtactgaaactggaaaattaaaatctcaattatcaatttatgaat 425


Query: 426 caattttaaaa 436
|||||||||||
Sbjct: 426 caattttaaaa 436


Score = 129 bits (65), Expect = 6e-30
Identities = 65/65 (100%)
Strand = Plus / Plus


Query: 500 gcactacttcaattcaaattggaagtgaagaaaattataaaatttaattattattataat 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gcactacttcaattcaaattggaagtgaagaaaattataaaatttaattattattataat 559


Query: 560 atttt 564
|||||
Sbjct: 560 atttt 564


>Contig-U09510-1 (Contig-U09510-1Q) /CSM_Contig/Contig-U09510-1Q.Seq.d
Length = 928

Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus


Query: 530 aaaattataaaatttaattattatta 555
||||||||||||||||||||||||||
Sbjct: 863 aaaattataaaatttaattattatta 888


>Contig-U15939-1 (Contig-U15939-1Q) /CSM_Contig/Contig-U15939-1Q.Seq.d
Length = 1357

Score = 40.1 bits (20), Expect = 0.004
Identities = 23/24 (95%)
Strand = Plus / Plus


Query: 541 atttaattattattataatatttt 564
||||||||||||||||| ||||||
Sbjct: 44 atttaattattattatattatttt 67


Score = 32.2 bits (16), Expect = 0.97
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 541 atttaattattattat 556
||||||||||||||||
Sbjct: 80 atttaattattattat 95


Database: CSM
Posted date: Jun 21, 2004 1:35 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 44,799
Number of Sequences: 8402
Number of extensions: 44799
Number of successful extensions: 12268
Number of sequences better than 10.0: 498
length of query: 623
length of database: 8,075,542
effective HSP length: 16
effective length of query: 607
effective length of database: 7,941,110
effective search space: 4820253770
effective search space used: 4820253770
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 1.15
Homology vs DNA
Query= Contig-U15195-1 (Contig-U15195-1Q) /CSM_Contig/Contig-U15195-1Q.Seq.d
(623 letters)

Database: ddbj_B
98,226,423 sequences; 98,766,808,389 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU284719) Dictyostelium discoideum gamete cDNA clone:FC-BI1... 442 0.0 3
(AC149942) Strongylocentrotus purpuratus clone R3-16I1, WORK... 54 0.007 1
(AC181530) Strongylocentrotus purpuratus clone R3-7A5, WORKI... 54 0.007 1
(AC180395) Strongylocentrotus purpuratus clone R3-3106N12, W... 54 0.007 1
(AC177567) Strongylocentrotus purpuratus clone R3-1026E7, WO... 54 0.007 1
(AC168606) Strongylocentrotus purpuratus clone R3-3046L6, WO... 54 0.007 1
(AC168418) Strongylocentrotus purpuratus clone R3-4002B2, WO... 54 0.007 1
(AB017003) Dugesia japonica mRNA for DjVLGB, partial cds. 40 0.069 2
(AL035476) Plasmodium falciparum MAL4P3. 46 1.1 4
(ED165531) AUAC-aai18e04.b1 Ascaris suum whole genome shotgu... 34 4.2 2
(AL590969) Mouse DNA sequence from clone RP23-281C18 on chro... 44 6.4 1
(AC134446) Mus musculus BAC clone RP24-173D10 from chromosom... 44 6.4 1
(AC120779) Mus musculus strain C57BL/6J clone rp23-194d11 ma... 44 6.4 1
(AC118543) Mus musculus strain C57BL/6J clone rp23-254b17 ma... 44 6.4 1
(AC144754) Ornithorhynchus anatinus clone OA_Bb-265C11, comp... 44 6.4 1
(AL096754) Human DNA sequence from clone LL22NC03-2E9 on chr... 44 6.4 1
(AC136924) Mus musculus chromosome 17 clone RP23-219G8 map 1... 44 6.4 1
(AC104559) Mus musculus chromosome 17 clone RP24-160C12 map ... 44 6.4 1
(CT971480) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.4 1
(AC232116) Solanum tuberosum strain Diploid genotype RH89-03... 44 6.4 1
(AC181354) Strongylocentrotus purpuratus clone R3-114I11, WO... 44 6.4 1
(AC179337) Strongylocentrotus purpuratus clone R3-57L15, WOR... 44 6.4 1
(AC168761) Strongylocentrotus purpuratus clone R3-3004F17, W... 44 6.4 1
(AC168045) Mus musculus chromosome 7 clone RP23-68O19 map 7,... 44 6.4 1
(AC020696) Homo sapiens chromosome 11 clone RP11-815K7 map 1... 44 6.4 1
(AZ064499) RPCI-23-386M8.TJ RPCI-23 Mus musculus genomic clo... 44 6.4 1
(FI256374) CccaBb038-N13JR CccABb Cajanus cajan genomic clon... 44 6.4 1
(FI236314) CccaBb030-O20JR CccABb Cajanus cajan genomic clon... 44 6.4 1
(EJ230094) 1092402575041 Global-Ocean-Sampling_GS-27-01-01-1... 44 6.4 1
(DU950179) 215288 Tomato MboI BAC Library Solanum lycopersic... 44 6.4 1
(AL346833) Tetraodon nigroviridis genome survey sequence T7 ... 44 6.4 1
(CB427472) 603052 MARC 6BOV Bos taurus cDNA 5', mRNA sequence. 44 6.4 1
(FK842721) K26041C12 Karenia brevis Multi-strain Library Kar... 44 6.4 1
(FC799859) CBGC3243.fwd CBGC Lottia gigantea 15h 18h embryos... 44 6.4 1
(FC717936) CBBG11807.rev CBBG Lottia gigantea 12,15,18h embr... 44 6.4 1
(EY683494) CS00-C1-650-047-A03-CT.F Sweet orange leaf, young... 44 6.4 1
(EX565234) AIAE-aaa27g10.b1 Ancylostoma_caninum_EST_Female_p... 44 6.4 1
(BJ400228) Dictyostelium discoideum cDNA clone:dds9h08, 3' e... 34 7.4 3
(EC821102) SME00001835 esmbsro2 Sawyeria marylandensis cDNA,... 34 8.1 2
(BJ399936) Dictyostelium discoideum cDNA clone:dds8i03, 3' e... 34 9.2 3
(BJ343781) Dictyostelium discoideum cDNA clone:dda17m03, 3' ... 34 9.4 3
(BJ399575) Dictyostelium discoideum cDNA clone:dds6f15, 3' e... 34 9.7 3
(BX470076) Zebrafish DNA sequence from clone DKEY-103E21 in ... 40 9.7 3

>(AU284719) Dictyostelium discoideum gamete cDNA clone:FC-BI11,
single read.
Length = 623

Score = 442 bits (223), Expect(3) = 0.0
Identities = 223/223 (100%)
Strand = Plus / Plus


Query: 1 ggtaataataataatggtataagtgatattcaacttagaactgattttgaattaatgggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtaataataataatggtataagtgatattcaacttagaactgattttgaattaatgggt 60


Query: 61 aaaaaattaggtgaacttggtacagaaaattataaattagatgaaagaaatagaacatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaaaaattaggtgaacttggtacagaaaattataaattagatgaaagaaatagaacatta 120


Query: 121 gaattaaagaataggcaattaacagaagatttggaaaagaaatcaaatgcagttagatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaattaaagaataggcaattaacagaagatttggaaaagaaatcaaatgcagttagatta 180


Query: 181 ttagtttcaaaaactcaacttggtaaagcaacctctgaagaag 223
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttagtttcaaaaactcaacttggtaaagcaacctctgaagaag 223

Score = 291 bits (147), Expect(3) = 0.0
Identities = 147/147 (100%)
Strand = Plus / Plus


Query: 246 gtggtggatttatgggaagtttttggagaaataatgatccaaagattgctgctgaaatgg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gtggtggatttatgggaagtttttggagaaataatgatccaaagattgctgctgaaatgg 305


Query: 306 tcgaaaaaatggaagttatgttacaagagaatgttcttaaaaatttccaactttcaaatg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tcgaaaaaatggaagttatgttacaagagaatgttcttaaaaatttccaactttcaaatg 365


Query: 366 atttagaattattaggtactgaaactg 392
|||||||||||||||||||||||||||
Sbjct: 366 atttagaattattaggtactgaaactg 392

Score = 60.0 bits (30), Expect(3) = 0.0
Identities = 30/30 (100%)
Strand = Plus / Plus


Query: 500 gcactacttcaattcaaattggaagtgaag 529
||||||||||||||||||||||||||||||
Sbjct: 500 gcactacttcaattcaaattggaagtgaag 529

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 98226423
Number of Hits to DB: 573,597,536
Number of extensions: 39364812
Number of successful extensions: 5675632
Number of sequences better than 10.0: 43
Length of query: 623
Length of database: 98,766,808,389
Length adjustment: 23
Effective length of query: 600
Effective length of database: 100,802,567,956
Effective search space: 60481540773600
Effective search space used: 60481540773600
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.15
Homology vs Protein
Query= Contig-U15195-1 (Contig-U15195-1Q) /CSM_Contig/Contig-U15195-1Q.Seq.d
(623 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

CP001185_773(CP001185|pid:none) Thermosipho africanus TCF52B, co... 36 0.78
AP009247_883(AP009247|pid:none) Candidatus Vesicomyosocius okuta... 35 1.7
AL834368_1(AL834368|pid:none) Homo sapiens mRNA; cDNA DKFZp762M1... 34 2.9
BC103499_1(BC103499|pid:none) Homo sapiens chromosome 10 open re... 34 2.9
(Q7Z3E2) RecName: Full=Uncharacterized protein C10orf118; AltNam... 34 2.9
(Q5R9B3) RecName: Full=Uncharacterized protein C10orf118 homolog... 34 2.9
(Q8C9S4) RecName: Full=Uncharacterized protein C10orf118 homolog... 34 2.9
CR859476_1(CR859476|pid:none) Pongo abelii mRNA; cDNA DKFZp459G1... 34 2.9
CP001287_1449(CP001287|pid:none) Cyanothece sp. PCC 8801, comple... 34 3.8
AF404340_1(AF404340|pid:none) Infectious salmon anemia virus seg... 34 3.8
DQ003606_2(DQ003606|pid:none) Infectious salmon anemia virus iso... 33 5.0
AB244100_1(AB244100|pid:none) Halomonas sp. 40 hopP genes for Pr... 33 5.0
D85197_1(D85197|pid:none) Schizosaccharomyces pombe stil+ gene, ... 33 5.0
(Q4L672) RecName: Full=Prephenate dehydrogenase; Short=... 33 5.0
AF312315_2(AF312315|pid:none) Infectious salmon anemia virus iso... 33 5.0
FN392322_300(FN392322|pid:none) Pichia pastoris GS115 chromosome... 33 6.6
(P40574) RecName: Full=AP-1-like transcription factor YAP5; &AY... 33 6.6
U17015_1(U17015|pid:none) Saccharomyces cerevisiae transcription... 33 6.6
AF262383_1(AF262383|pid:none) Infectious salmon anemia virus iso... 33 6.6
AE016818_123(AE016818|pid:none) Ashbya gossypii (= Eremothecium ... 33 6.6
DQ003605_2(DQ003605|pid:none) Infectious salmon anemia virus iso... 33 8.6

>CP001185_773(CP001185|pid:none) Thermosipho africanus TCF52B,
complete genome.
Length = 818

Score = 36.2 bits (82), Expect = 0.78
Identities = 24/67 (35%), Positives = 37/67 (55%)
Frame = +2

Query: 287 KIAAEMVEKMEVMLQENVLKNFQLSNDLELLGTETGKLKSQLSIYESILKENNIEKPTFK 466
KI +E +EK E +L E + + +S E T KL+ +L+ YE L+E+ + P F
Sbjct: 598 KIDSE-IEKFENILSEEIYPEYIMSKIYE-----TEKLRDELNSYEKDLQEDIEKAPEFS 651

Query: 467 NLHENLK 487
+ ENLK
Sbjct: 652 EILENLK 658

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 598,120,262
Number of extensions: 8926359
Number of successful extensions: 33884
Number of sequences better than 10.0: 21
Number of HSP's gapped: 33821
Number of HSP's successfully gapped: 21
Length of query: 207
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 84
Effective length of database: 653,084,107
Effective search space: 54859064988
Effective search space used: 54859064988
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.40 gvh: 0.14 alm: 0.52 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.06
nuc: 0.10 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: nuclear
32.0 %: cytoplasmic
4.0 %: plasma membrane

>> prediction for Contig-U15195-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 0